Citrus Sinensis ID: 029054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mhsyrklvsskgstkvdaaENDLESGIDWLLKQLQQVNIQMQdwvssggsemvsHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRtrldledgvgspeqALLKEHASinrstgqmDSVISQAQATLGALVFQrstfgginsklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Flexible Loop (DISEMBL)
mhsyrklvsskgstkvdaaENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSklsnvssrlpsVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Low Complexity Region (SEG)
MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered region (IsUnstruct)
************************SGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLR*********************************************************AQATLGALVFQRSTFGGINSK***********NQILSSIKRKKSMDTIILALVASVCTFLIFIYWV**
Disordered Region (DISOPRED)
*HSYR************************LLKQLQQV***********************QEILQDLTQEFYRLRS***************************************************SVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISEMBL)
******************AENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Disordered Region (DISPRO)
****************DAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREF**********VGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9LMP7	223	Golgi SNAP receptor compl	yes	no	0.995	0.892	0.835	4e-94
O22151	257	Golgi SNAP receptor compl	no	no	0.91	0.708	0.361	2e-27
Q2TBU3	250	Golgi SNAP receptor compl	yes	no	0.82	0.656	0.333	1e-19
O95249	250	Golgi SNAP receptor compl	no	no	0.82	0.656	0.327	2e-19
O08522	250	Golgi SNAP receptor compl	yes	no	0.82	0.656	0.327	2e-19
O88630	250	Golgi SNAP receptor compl	yes	no	0.82	0.656	0.327	2e-19
Q62931	250	Golgi SNAP receptor compl	yes	no	0.82	0.656	0.327	3e-19
Q5RBL6	248	Golgi SNAP receptor compl	yes	no	0.82	0.661	0.322	4e-19
Q95ZW1	234	Golgi SNAP receptor compl	yes	no	0.84	0.717	0.307	8e-14
Q9VE50	232	Golgi SNAP receptor compl	yes	no	0.83	0.715	0.289	2e-13

>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1

 Score =  343 bits (880), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 183/200 (91%), Gaps = 1/200 (0%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           MHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 25  MHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  IN
Sbjct: 85  QEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGIN 143

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+T QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTI
Sbjct: 144 RNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTI 203

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVA+VCTFLIFIYW+TK
Sbjct: 204 ILSLVAAVCTFLIFIYWITK 223

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
Arabidopsis thaliana (taxid: 3702)

>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 109/202 (53%), Gaps = 20/202 (9%)

Query: 13  STKVDAAENDLESGIDW---------LLKQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQE 62
           S  VD     + SG  W         LL++L  +N  M    +S   +  V+  L RH++
Sbjct: 62  SGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRD 121

Query: 63  ILQDLTQEFYRLRSSLKAKQEHASLL----EDFREFDRTRLDLEDGVGSPEQALLKEHAS 118
           IL + TQEF R++ ++ + +EHA LL    +D  E+  +      G  SP   +L+E AS
Sbjct: 122 ILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKAS------GSMSPGVQVLRERAS 175

Query: 119 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD 178
           I+ S   +D VI QAQAT   L  QRS F  +  K+ N+  + P +  +L SIKRK+S D
Sbjct: 176 IHGSISHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRD 235

Query: 179 TIILALVASVCTFLIFIYWVTK 200
           T+IL+ V + CT  + IYW++K
Sbjct: 236 TLILSAVIAACTLFLIIYWLSK 257

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct: 74  IEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIR 133

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 134 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct: 188 KENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Bos taurus (taxid: 9913)

>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct: 74  IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 134 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct: 188 KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Homo sapiens (taxid: 9606)

>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct: 74  IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 134 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct: 188 KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Cricetulus griseus (taxid: 10029)

>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct: 74  IEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIR 133

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 134 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct: 188 KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Mus musculus (taxid: 10090)

>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct: 74  IEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 134 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 187

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct: 188 KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 99/180 (55%), Gaps = 16/180 (8%)

Query: 27  IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
           I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  + +
Sbjct: 72  IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIR 131

Query: 83  EHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHASINRSTGQMDSVISQAQAT 136
           E  +L+   R+      D+E      GV +    L LKEH  +  S   ++  IS A AT
Sbjct: 132 ERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMAT 185

Query: 137 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              +  QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct: 186 KENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Pongo abelii (taxid: 9601)

>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 27  IDWLLKQLQQVNIQMQDWVSS------GGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 80
           I+ L++QL  +N  M D   +        +  + HTL RH+EIL+D   E+ R R ++  
Sbjct: 58  IEGLIEQLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQ 117

Query: 81  KQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGAL 140
             +   LL    E +R    L +     +   LKE+  IN     +D  +  A +T   +
Sbjct: 118 VLQRELLLSSSNE-NRNNPILNNRARGYDM-YLKENDHINACDRLLDEQLEMAMSTKENM 175

Query: 141 VFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIF-IYWV 198
             Q     GI+++L ++S + P++N ++  IK KK  +T+ILA V S C  LIF I+W+
Sbjct: 176 ARQGINLRGISTRLHHISKKYPAINNLMQKIKTKKQKNTLILAAVISSC--LIFTIFWI 232

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster GN=Gos28 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 21  NDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKA 80
           + L   I+ +L++L  +N  M D  +SG + M  HTL RH+EILQ   QEF ++ ++   
Sbjct: 57  DSLSEEIEQMLEKLSSLNESMSDLPASGAAAM--HTLQRHREILQGYRQEFNKICANHTM 114

Query: 81  KQEHASLLEDFREFDRTRLDLEDGVGSP-------EQALLKEHASINRSTGQMDSVISQA 133
           + E   LL            L    GSP        +  LKE   +N ++  ++  I+ A
Sbjct: 115 RIEREELLRGS--------GLATSSGSPSISGLNRREMYLKESGHLNSASHLVNDQINIA 166

Query: 134 QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI 193
             T   L  QR  F  + ++ +++S+R P ++ ++  I  KK  D++IL  V   C  L+
Sbjct: 167 IETRDHLHAQRQAFKRLQTRFNDISNRFPLISSLIQRINIKKRRDSLILGAVIGFCVILL 226

Query: 194 FIY 196
            +Y
Sbjct: 227 LLY 229

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
255572761	253	golgi snare 11 protein, putative [Ricinu	1.0	0.790	0.9	1e-100
224057553	226	predicted protein [Populus trichocarpa]	1.0	0.884	0.875	1e-97
224072701	228	predicted protein [Populus trichocarpa]	1.0	0.877	0.865	6e-96
449468924	228	PREDICTED: Golgi SNAP receptor complex m	1.0	0.877	0.85	1e-95
18394296	223	Golgi SNARE 11 protein [Arabidopsis thal	0.995	0.892	0.835	2e-92
297850012	223	hypothetical protein ARALYDRAFT_471787 [	0.995	0.892	0.83	4e-92
356526250	223	PREDICTED: Golgi SNARE 11 protein-like [	0.995	0.892	0.84	8e-90
388514625	224	unknown [Lotus japonicus]	1.0	0.892	0.81	2e-88
388508504	216	unknown [Lotus japonicus]	1.0	0.925	0.81	2e-88
388497022	241	unknown [Medicago truncatula]	0.98	0.813	0.831	5e-88

>gi|255572761|ref|XP_002527313.1| golgi snare 11 protein, putative [Ricinus communis] gi|223533313|gb|EEF35065.1| golgi snare 11 protein, putative [Ricinus communis]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/200 (90%), Positives = 192/200 (96%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M+SYRKLVSSKGS KVDAAENDLESG+D LLKQLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 25  MNSYRKLVSSKGSIKVDAAENDLESGVDRLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEF+RLRSSL+AKQEHASLLEDFREFDRTRLDLEDGVGS EQALL+EHASI 
Sbjct: 85  QEILQDLTQEFHRLRSSLRAKQEHASLLEDFREFDRTRLDLEDGVGSTEQALLREHASIG 144

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TGQMD+VISQAQATLGALV QRSTFGGINSKLSNVSSRLP+VN IL++IKRKKSMDTI
Sbjct: 145 RNTGQMDNVISQAQATLGALVLQRSTFGGINSKLSNVSSRLPTVNHILTAIKRKKSMDTI 204

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVASVCTFLIFIYW+TK
Sbjct: 205 ILSLVASVCTFLIFIYWLTK 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057553|ref|XP_002299264.1| predicted protein [Populus trichocarpa] gi|222846522|gb|EEE84069.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 175/200 (87%), Positives = 191/200 (95%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M+SYRKL SSKGSTKVD+AEND ESGID LLKQLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 27  MNSYRKLASSKGSTKVDSAENDPESGIDRLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRH 86

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEF+RLRS ++AKQEHA LLEDFREFDRTRLDLEDGVGS +QALL+EHASI+
Sbjct: 87  QEILQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLDLEDGVGSADQALLREHASIS 146

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TGQMD+VISQAQATLG+LV QRSTFGGINSKLSNVSSRLP+VNQILS+IKR+KSMD+I
Sbjct: 147 RNTGQMDNVISQAQATLGSLVLQRSTFGGINSKLSNVSSRLPTVNQILSAIKRRKSMDSI 206

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVASVCTFLIFIYWVTK
Sbjct: 207 ILSLVASVCTFLIFIYWVTK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072701|ref|XP_002303840.1| predicted protein [Populus trichocarpa] gi|222841272|gb|EEE78819.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 173/200 (86%), Positives = 188/200 (94%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M ++RKL SSKGSTKVD  ENDLESGID LLKQLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 29  MSTFRKLASSKGSTKVDFPENDLESGIDRLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRH 88

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEF+RLRS ++AKQEHA LLEDFREFDRTRLDLEDGVGS +QALL+EHASI+
Sbjct: 89  QEILQDLTQEFHRLRSGMRAKQEHALLLEDFREFDRTRLDLEDGVGSADQALLREHASIS 148

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TGQMD+VISQAQ+TLGALV QRSTFGGINSKLSNVSSRLP+VNQILS+IKRKKSMD I
Sbjct: 149 RNTGQMDNVISQAQSTLGALVLQRSTFGGINSKLSNVSSRLPTVNQILSAIKRKKSMDAI 208

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVASVCTFLIFIYW+TK
Sbjct: 209 ILSLVASVCTFLIFIYWLTK 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468924|ref|XP_004152171.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus] gi|449484796|ref|XP_004156982.1| PREDICTED: Golgi SNAP receptor complex member 1-1-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/200 (85%), Positives = 191/200 (95%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M+S+RKLVS+KGST V+ A++D+ESGI+ LLKQLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 29  MNSFRKLVSTKGSTNVETADSDIESGIERLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRH 88

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEFYRLRSSL+AKQEHASLL+DFREFDR+RL+LEDG+G+ EQ LLKEHA+I 
Sbjct: 89  QEILQDLTQEFYRLRSSLRAKQEHASLLDDFREFDRSRLELEDGLGTAEQTLLKEHATIG 148

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           RSTGQMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVN IL++IKRKKSMDTI
Sbjct: 149 RSTGQMDNVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNHILAAIKRKKSMDTI 208

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVAS+CTFLIFIYW+TK
Sbjct: 209 ILSLVASICTFLIFIYWLTK 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394296|ref|NP_563985.1| Golgi SNARE 11 protein [Arabidopsis thaliana] gi|27805476|sp|Q9LMP7.1|GOS11_ARATH RecName: Full=Golgi SNAP receptor complex member 1-1; AltName: Full=Golgi SNARE 11 protein; Short=AtGOS11 gi|8927666|gb|AAF82157.1|AC034256_21 Contains similarity to GOS28/P28 protein from Homo sapiens gb|AF047438. ESTs gb|F14225, gb|AA395297, gb|BE038320 come from this gene [Arabidopsis thaliana] gi|12083260|gb|AAG48789.1|AF332426_1 unknown protein [Arabidopsis thaliana] gi|13898893|gb|AAK48904.1|AF357528_1 Golgi SNARE 11 protein [Arabidopsis thaliana] gi|15294144|gb|AAK95249.1|AF410263_1 At1g15880/F7H2_20 [Arabidopsis thaliana] gi|20147267|gb|AAM10347.1| At1g15880/F7H2_20 [Arabidopsis thaliana] gi|332191257|gb|AEE29378.1| Golgi SNARE 11 protein [Arabidopsis thaliana]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/200 (83%), Positives = 183/200 (91%), Gaps = 1/200 (0%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           MHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 25  MHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  IN
Sbjct: 85  QEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGIN 143

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+T QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTI
Sbjct: 144 RNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTI 203

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVA+VCTFLIFIYW+TK
Sbjct: 204 ILSLVAAVCTFLIFIYWITK 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850012|ref|XP_002892887.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata] gi|297338729|gb|EFH69146.1| hypothetical protein ARALYDRAFT_471787 [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 166/200 (83%), Positives = 183/200 (91%), Gaps = 1/200 (0%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           MHSYR+LVS+K  +K D +E DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 25  MHSYRRLVSTKALSKSDGSETDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQ+L+KEH  IN
Sbjct: 85  QEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQSLIKEHMGIN 143

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+T QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTI
Sbjct: 144 RNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTI 203

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVA+VCTFLIFIYW+TK
Sbjct: 204 ILSLVAAVCTFLIFIYWITK 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526250|ref|XP_003531731.1| PREDICTED: Golgi SNARE 11 protein-like [Glycine max]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/200 (84%), Positives = 183/200 (91%), Gaps = 1/200 (0%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M+SYRKLVS+  STK DAAE+DLES I+ LLKQLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct: 25  MNSYRKLVSNNVSTKADAAESDLESWIERLLKQLQQVNTQMQAWVSSGGSEMVSHTLTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQDLTQEFYRLRSSLKAKQEHASLLEDF+EFDRTRLDLE  V S + ALLKE  SI+
Sbjct: 85  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFKEFDRTRLDLEQ-VDSEQHALLKERTSIS 143

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TG MD+VISQAQATLGALVFQRSTFGGINSKL NVSSRLP+VN ILS+IKRKKSMDTI
Sbjct: 144 RNTGHMDNVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNSILSAIKRKKSMDTI 203

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVA+VCTFLIFIYW++K
Sbjct: 204 ILSLVAAVCTFLIFIYWLSK 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514625|gb|AFK45374.1| unknown [Lotus japonicus]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 162/200 (81%), Positives = 180/200 (90%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M S+RKLVS+  S K DAAENDLES I+ LLKQLQQVN QMQ WVSSGG++MVSHT TRH
Sbjct: 25  MSSFRKLVSASVSAKTDAAENDLESWIEQLLKQLQQVNSQMQAWVSSGGTDMVSHTSTRH 84

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQD+TQEFYRLRSSL+AKQEHASLLEDF+EFDRTRLDLE G GS + ALLKE ASI+
Sbjct: 85  QEILQDITQEFYRLRSSLRAKQEHASLLEDFKEFDRTRLDLETGAGSEQHALLKERASIS 144

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TG +D+VISQAQATLGALVFQRSTFGGINSK+SNVS RLP+VN IL +IKRKKSMDTI
Sbjct: 145 RNTGHVDTVISQAQATLGALVFQRSTFGGINSKISNVSGRLPTVNSILGAIKRKKSMDTI 204

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVASVC FLIFIYW+TK
Sbjct: 205 ILSLVASVCIFLIFIYWLTK 224

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508504|gb|AFK42318.1| unknown [Lotus japonicus]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 162/200 (81%), Positives = 180/200 (90%)

Query: 1   MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
           M S+RKLVS+  S K DAAEN LES I+ LLKQLQQVN QMQ WVSSGG++MVSHTLTRH
Sbjct: 17  MSSFRKLVSASVSAKTDAAENVLESWIEQLLKQLQQVNSQMQAWVSSGGTDMVSHTLTRH 76

Query: 61  QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
           QEILQD+TQEFYRLRSSL+AKQEHASLLEDF+EFDRTRLDLE G GS + ALLKE ASI+
Sbjct: 77  QEILQDITQEFYRLRSSLRAKQEHASLLEDFKEFDRTRLDLETGAGSEQHALLKERASIS 136

Query: 121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
           R+TG +D+VISQAQATLGALVFQRSTFGGINSK+SNVS RLP+VN IL +IKRKKSMDTI
Sbjct: 137 RNTGHVDTVISQAQATLGALVFQRSTFGGINSKISNVSGRLPTVNSILGAIKRKKSMDTI 196

Query: 181 ILALVASVCTFLIFIYWVTK 200
           IL+LVASVC FLIFIYW+TK
Sbjct: 197 ILSLVASVCIFLIFIYWLTK 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497022|gb|AFK36577.1| unknown [Medicago truncatula]

 Score =  329 bits (843), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 163/196 (83%), Positives = 179/196 (91%)

Query: 4   YRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEI 63
           YRKLVS+K STK +A E+DLES I+ LL QL+QVN QMQ WVSSGGSEMVSHTLTRHQEI
Sbjct: 27  YRKLVSTKASTKGEATESDLESWIERLLNQLKQVNSQMQAWVSSGGSEMVSHTLTRHQEI 86

Query: 64  LQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 123
            QDLTQEFYRLRS+L+AKQEHASLL+DF+E DRTRLDLE+G GS +Q LLKE ASI+RST
Sbjct: 87  YQDLTQEFYRLRSNLRAKQEHASLLDDFKELDRTRLDLEEGGGSEQQNLLKERASISRST 146

Query: 124 GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 183
           GQMD+VISQAQATLGALVFQRSTFGGINSKLSNVSSRLP+VN ILS+IKRKKSMDTIILA
Sbjct: 147 GQMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNTILSAIKRKKSMDTIILA 206

Query: 184 LVASVCTFLIFIYWVT 199
           LV SVC FLIFIYW+T
Sbjct: 207 LVGSVCVFLIFIYWLT 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2036194	223	GOS11 "AT1G15880" [Arabidopsis	0.995	0.892	0.835	2.4e-83
UNIPROTKB|G5E571	244	GOSR1 "Golgi SNAP receptor com	0.845	0.692	0.337	1e-20
UNIPROTKB|Q2TBU3	250	GOSR1 "Golgi SNAP receptor com	0.845	0.676	0.337	1e-20
ZFIN|ZDB-GENE-050417-133	250	gosr1 "golgi SNAP receptor com	0.845	0.676	0.337	1e-20
UNIPROTKB|E2R812	250	GOSR1 "Golgi SNAP receptor com	0.845	0.676	0.337	1.3e-20
UNIPROTKB|E9PCW1	248	GOSR1 "Golgi SNAP receptor com	0.845	0.681	0.331	1.3e-20
UNIPROTKB|G5E9T8	255	GOSR1 "Golgi SNAP receptor com	0.845	0.662	0.331	1.3e-20
UNIPROTKB|J3KST5	185	GOSR1 "Golgi SNAP receptor com	0.845	0.913	0.331	1.3e-20
UNIPROTKB|O95249	250	GOSR1 "Golgi SNAP receptor com	0.845	0.676	0.331	1.3e-20
UNIPROTKB|O08522	250	GOSR1 "Golgi SNAP receptor com	0.845	0.676	0.331	1.3e-20

TAIR|locus:2036194 GOS11 "AT1G15880" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 167/200 (83%), Positives = 183/200 (91%)

Query:     1 MHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRH 60
             MHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRH
Sbjct:    25 MHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRH 84

Query:    61 QEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASIN 120
             QEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  IN
Sbjct:    85 QEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGIN 143

Query:   121 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 180
             R+T QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTI
Sbjct:   144 RNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTI 203

Query:   181 ILALVASVCTFLIFIYWVTK 200
             IL+LVA+VCTFLIFIYW+TK
Sbjct:   204 ILSLVAAVCTFLIFIYWITK 223

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;IPI

GO:0016021 "integral to membrane" evidence=TAS

GO:0000149 "SNARE binding" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|G5E571 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    68 IEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIR 127

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   128 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 186

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   187 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 241

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|Q2TBU3 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIR 133

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   193 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-050417-133 gosr1 "golgi SNAP receptor complex member 1" [Danio rerio (taxid:7955)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 59/175 (33%), Positives = 95/175 (54%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ S+ G    +  + HTL RH++ILQD T EF++ +S+  A +
Sbjct:    74 IEQLLAKLTGVNDKMAEYTSTPGVTSLNAALMHTLQRHRDILQDYTHEFHKTKSNFMAIR 133

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E   LL   R+ D        GV +    L LKEH  +  S   +D  IS A AT   + 
Sbjct:   134 EREDLLGSVRK-DIETYKSGSGVNNRRTELFLKEHEHLRNSDRLIDDTISIAMATKENMT 192

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I S+++ +++R P++N ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   193 SQRGLLKSIQSRVNTLANRFPAINNLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2R812 GOSR1 "Golgi SNAP receptor complex member 1" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/175 (33%), Positives = 96/175 (54%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I SK++ +++R P+VN ++  I  +K  D++IL  V  VCT L+ +Y
Sbjct:   193 SQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLY 247

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

UNIPROTKB|E9PCW1 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    72 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 131

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   132 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 190

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   191 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|G5E9T8 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    79 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 138

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   139 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 197

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   198 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 252

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J3KST5 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:     9 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 68

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:    69 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 127

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   128 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 182

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O95249 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   193 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|O08522 GOSR1 "Golgi SNAP receptor complex member 1" [Cricetulus griseus (taxid:10029)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 58/175 (33%), Positives = 97/175 (55%)

Query:    27 IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQ 82
             I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +
Sbjct:    74 IEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIR 133

Query:    83 EHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHASINRSTGQMDSVISQAQATLGALV 141
             E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A AT   + 
Sbjct:   134 ERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMT 192

Query:   142 FQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY 196
              QR     I+SK++ +++R P+VN ++  I  +K  D++IL  V  +CT L+ +Y
Sbjct:   193 SQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LMP7	GOS11_ARATH	No assigned EC number	0.835	0.995	0.8923	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I7426 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
pfam12352	66	pfam12352, V-SNARE_C, Snare region anchored in the	1e-15

>gnl|CDD|152787 pfam12352, V-SNARE_C, Snare region anchored in the vesicle membrane C-terminus

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 24/66 (36%), Positives = 31/66 (46%)

Query: 110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 169
           + LL+EH  +  S    D  IS  QA L  L  QR T     +KL N  +RL   N  L 
Sbjct: 1   ERLLREHDRLKNSHRIADETISIGQAILEDLHSQRETLKRARNKLHNTDNRLGKSNSTLR 60

Query: 170 SIKRKK 175
            I R++
Sbjct: 61  LINRRR 66

Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	100.0
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	100.0
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	99.96
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	99.66
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	99.12
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	98.57
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	97.95
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	97.4
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	97.11
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.9
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	96.86
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	96.77
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	96.09
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	94.76
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	92.6
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	92.52
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	92.3
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	92.16
PRK09546	324	zntB zinc transporter; Reviewed	91.41
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.45
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	90.17
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	89.89
KOG2678	244	consensus Predicted membrane protein [Function unk	89.56
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	88.11
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	87.06
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	86.24
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	85.66
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	84.17
PRK10884	206	SH3 domain-containing protein; Provisional	83.76
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	83.58
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	83.26
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	81.83
PF12911	56	OppC_N: N-terminal TM domain of oligopeptide trans	81.02
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	80.94
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	80.9

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-43  Score=280.70  Aligned_cols=196  Identities=47%  Similarity=0.640  Sum_probs=170.8

Q ss_pred             Cchhhhhhhc---------cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHHHHHHH
Q 029054            1 MHSYRKLVSS---------KGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGG--SEMVSHTLTRHQEILQDLTQ   69 (200)
Q Consensus         1 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~--~~~~~~~l~r~r~~L~~~~~   69 (200)
                      |++|++++++         .+-...+...++++.+||.+|+++.+++|+|..+. ..|  .++.+|+++|||++|++|.+
T Consensus        25 L~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~-~s~a~~aa~~htL~RHrEILqdy~q  103 (231)
T KOG3208|consen   25 LVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCA-SSPANSAAVMHTLQRHREILQDYTQ  103 (231)
T ss_pred             HHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            5799999777         12233455899999999999999999999999943 334  46677999999999999999


Q ss_pred             HHHHHHhhHHhHHHHHHhhccccccccccCcccCCCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 029054           70 EFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGG  149 (200)
Q Consensus        70 e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~  149 (200)
                      ||++++.++.+.++|+.|+++++.+. ..++..++ ....+.+++|+++|++|.+.+|++|++|++|+++|+.||.+|++
T Consensus       104 ef~rir~n~~a~~e~~~Ll~s~~~~~-~~~~~~~~-~~~~e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~  181 (231)
T KOG3208|consen  104 EFRRIRSNIDAKRERESLLESVRADI-SSYPSASG-FNRGEMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGG  181 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCccCC-CchHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999976322 11222222 23348999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054          150 INSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT  199 (200)
Q Consensus       150 ~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~  199 (200)
                      ++.|++++++++|.+|++|.+|++|++||.+|+++||++|++|++||||.
T Consensus       182 i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~  231 (231)
T KOG3208|consen  182 INNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN  231 (231)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999984

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-31  Score=213.84  Aligned_cols=185  Identities=17%  Similarity=0.172  Sum_probs=151.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch---hhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccc
Q 029054           15 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSE---MVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDF   91 (200)
Q Consensus        15 ~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~---~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~   91 (200)
                      .|+++++.+..+|+..++|++++++||+.+|++.||+   .+..+++.|+..|.+++.|+++....--...+|+++++..
T Consensus        29 ~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~  108 (220)
T KOG1666|consen   29 LPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEAL  108 (220)
T ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhh
Confidence            3578999999999999999999999999999999974   4456888888888888888888774323345788888764


Q ss_pred             cccccccCcccC--CCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHH
Q 029054           92 REFDRTRLDLED--GVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS  169 (200)
Q Consensus        92 ~~~~~~~~d~~~--~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~  169 (200)
                      .. ++...+.++  .+.++++.|-+.+++|..|+|.+.|++++|++|+++|+.||++|.+++.+|++++.++|+|+++++
T Consensus       109 ~a-dd~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~  187 (220)
T KOG1666|consen  109 EA-DDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILT  187 (220)
T ss_pred             hc-cccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence            21 110001111  123444566677778888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhchHHHHHHHHHHHHHHHHHHHhC
Q 029054          170 SIKRKKSMDTIILALVASVCTFLIFIYWVTK  200 (200)
Q Consensus       170 ~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~K  200 (200)
                      .|.||..+++|++++||++++++++++.|+|
T Consensus       188 tM~RR~~~nk~~~~aii~~l~~~il~ilY~k  218 (220)
T KOG1666|consen  188 TMTRRLIRNKFTLTAIIALLVLAILLILYSK  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988888887776

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.7e-28  Score=194.64  Aligned_cols=171  Identities=22%  Similarity=0.264  Sum_probs=137.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-----------HHhHHHHHH
Q 029054           18 AAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSS-----------LKAKQEHAS   86 (200)
Q Consensus        18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~-----------~~~~~~R~~   86 (200)
                      .+-..++.+|+..++++...|..|+..+.+.||+.+.  -.+.+  ..+++.++..++..           .++.++|++
T Consensus        29 ~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq--~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~  104 (213)
T KOG3251|consen   29 QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQ--AARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVE  104 (213)
T ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5677899999999999999999999999999976442  22222  33344444333333           345677999


Q ss_pred             hhccccccccccCcccCCCCCHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHH
Q 029054           87 LLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ  166 (200)
Q Consensus        87 Ll~~~~~~~~~~~d~~~~~~~~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~  166 (200)
                      ||++..  ..  ++..  ...+.|.++++++.+.+||+++|+++.+|++|+++|..||-+|+++++|++++.+++|.||.
T Consensus       105 lL~~~~--~~--~~~~--~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~  178 (213)
T KOG3251|consen  105 LLDRRF--TN--GATG--TSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQ  178 (213)
T ss_pred             HhcCCC--CC--CCcc--CCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            998742  21  1111  12346899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhchHHH-HHHHHHHHHHHHHHHH
Q 029054          167 ILSSIKRKKSMDTIIL-ALVASVCTFLIFIYWV  198 (200)
Q Consensus       167 ~l~~I~rR~~~d~~Il-~~vi~~~i~~~~~~~~  198 (200)
                      ||+.|+||.+.||+|| +|||+||++|+++|+|
T Consensus       179 ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w  211 (213)
T KOG3251|consen  179 TIRLIERRVREDKIIFYGGVILTLVIMYLFYRW  211 (213)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997 5888888888877765

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=99.66  E-value=3.9e-16  Score=105.62  Aligned_cols=66  Identities=35%  Similarity=0.481  Sum_probs=63.9

Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhh
Q 029054          110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  175 (200)
Q Consensus       110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~  175 (200)
                      |+|++|+++|++|++++++++++|.+|+.+|..||++|+++++|+.++++++|.++++|+.|.||+
T Consensus         1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~   66 (66)
T PF12352_consen    1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK   66 (66)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence            579999999999999999999999999999999999999999999999999999999999999985

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=99.12  E-value=9.7e-10  Score=79.09  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=67.3

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVA  186 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi  186 (200)
                      +++|.++++++.+.++++..+++.|.+|.++|+.+++...++...+..+.++++.|.|+...|++|+++.+
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~   77 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAF   77 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999987443

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=98.57  E-value=5.2e-07  Score=62.76  Aligned_cols=59  Identities=19%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054           16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL   78 (200)
Q Consensus        16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~   78 (200)
                      ++++++....+|+..|+++.+++++|+.|+++.|++    ....|...+.+|+.++.+++..+
T Consensus        19 ~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s----~r~~~~~kl~~yr~~l~~lk~~l   77 (79)
T PF05008_consen   19 SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPS----ERNQYKSKLRSYRSELKKLKKEL   77 (79)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            458999999999999999999999999999999864    24556666666666666666544

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0051  Score=52.52  Aligned_cols=68  Identities=9%  Similarity=0.137  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054          131 SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV  198 (200)
Q Consensus       131 ~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~  198 (200)
                      ++=.+.-.-..+|.|+++++-+-+.+++-.++++.+.|-+-=.|...++|++.=|++++++|+++||+
T Consensus       241 ~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl  308 (311)
T KOG0812|consen  241 GIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL  308 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            44445555668999999999999999999999999999999999999999998777777777766654

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.016  Score=47.60  Aligned_cols=112  Identities=19%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccccccccccCccc--C--CCCCHHHHHHHHhHHHHhHHHHHHHHH
Q 029054           55 HTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLE--D--GVGSPEQALLKEHASINRSTGQMDSVI  130 (200)
Q Consensus        55 ~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~d~~--~--~~~~~~~~ll~e~~~L~~S~~~~d~~l  130 (200)
                      ....-|...|++|+.++++++..++....+.-..+.... -  ..+..  +  ...+++++|++.+++|++|.+.+.+-.
T Consensus        65 ~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde-~--~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~  141 (220)
T KOG1666|consen   65 NFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDE-L--LEALEADDQNISADQRARLLQNTERLERSTDRLKDSQ  141 (220)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH-H--HhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHH
Confidence            457789999999999999999998776533333332100 0  01111  1  124667899999999999999999999


Q ss_pred             HHHHHHHHHHHHh-HHHhhhHHHHHHHhhccCChHHHHHHH
Q 029054          131 SQAQATLGALVFQ-RSTFGGINSKLSNVSSRLPSVNQILSS  170 (200)
Q Consensus       131 ~~g~~~l~~L~~Q-r~~l~~~~~rl~~~~~~l~~s~~~l~~  170 (200)
                      -+|.+| +.++.+ =+-|.+-+..|...-.+|..++.-+.+
T Consensus       142 Ria~ET-EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgk  181 (220)
T KOG1666|consen  142 RIALET-EQIGSEILEDLHGQREQLERARERLRETDANLGK  181 (220)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence            999996 344443 355777788888888888887776654

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.07  Score=44.70  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhccccccccccC
Q 029054           25 SGIDWLLKQLQQVNIQMQDWVSSGGS-----EMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRL   99 (200)
Q Consensus        25 ~~Ie~~l~e~~~~~~~m~~~v~~~~~-----~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~~~R~~Ll~~~~~~~~~~~   99 (200)
                      +.|+..++.+++.+.=+..-..+...     +.+...+.+.+..+++.+-.|...  .+.....|..|++.-..  ++ .
T Consensus        49 ~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~~~r~~l~~~~~~--~~-~  123 (235)
T KOG3202|consen   49 RSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFANSNIRDILLGPEKS--PN-L  123 (235)
T ss_pred             HHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhhhcCCCCC--Cc-h
Confidence            36777777776666655544333321     223344444444554444444331  11111236666654110  00 0


Q ss_pred             ccc----CCCC------CHHHHHHHHhH-HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054          100 DLE----DGVG------SPEQALLKEHA-SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  168 (200)
Q Consensus       100 d~~----~~~~------~~~~~ll~e~~-~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l  168 (200)
                      +..    .+..      .....+++|++ .|+.=+..+-.+-++|..+-++|..|...|..-..=|-.+.+.|....+-+
T Consensus       124 ~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l  203 (235)
T KOG3202|consen  124 DEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRL  203 (235)
T ss_pred             hhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000    0101      11245666665 777777777888899999999999999999999888888999999999999


Q ss_pred             HHHHHhhhhch
Q 029054          169 SSIKRKKSMDT  179 (200)
Q Consensus       169 ~~I~rR~~~d~  179 (200)
                      ..+.+......
T Consensus       204 ~~v~~~~s~~~  214 (235)
T KOG3202|consen  204 AKVNRMASQCS  214 (235)
T ss_pred             HHHHHHhcccc
Confidence            99998444333

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.016  Score=43.25  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhh---ccCChH-HHHHHHHHHhhhhchHHHHHHHHHHHH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS---SRLPSV-NQILSSIKRKKSMDTIILALVASVCTF  191 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~---~~l~~s-~~~l~~I~rR~~~d~~Il~~vi~~~i~  191 (200)
                      ++++++....+||+.++=..=.+..-+--+.|....+|-....   +.|-.. .++=+++-.+..+-++|++.|++++++
T Consensus        28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~  107 (116)
T KOG0860|consen   28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV  107 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999999998877777777777777777666654444   344333 344555666677888888888777777


Q ss_pred             HHHHHHHh
Q 029054          192 LIFIYWVT  199 (200)
Q Consensus       192 ~~~~~~~~  199 (200)
                      ++++|+|.
T Consensus       108 iiii~~~~  115 (116)
T KOG0860|consen  108 VIIIYIFL  115 (116)
T ss_pred             HHHHHHhc
Confidence            77777764

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=96.86  E-value=0.23  Score=41.84  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             HHHHHHhHHHHhHHHHHHHHH-------HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHH
Q 029054          110 QALLKEHASINRSTGQMDSVI-------SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL  182 (200)
Q Consensus       110 ~~ll~e~~~L~~S~~~~d~~l-------~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il  182 (200)
                      +..++.+..++..  ..++++       +.+...-..|.....+|..+...+..-...++..+.=|+.+.++... .|.+
T Consensus       155 e~~l~~~~~~QE~--L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~-~~~~  231 (251)
T PF09753_consen  155 EKILQHHRNLQED--LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG-CWTW  231 (251)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHH
Confidence            5556556655543  344444       45556667788888888888888888777888888777777655444 5555


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 029054          183 ALVASVCTFLIFIYWVTK  200 (200)
Q Consensus       183 ~~vi~~~i~~~~~~~~~K  200 (200)
                      .+++++|++||++|+|-|
T Consensus       232 ~~i~~v~~~Fi~mvl~ir  249 (251)
T PF09753_consen  232 LMIFVVIIVFIMMVLFIR  249 (251)
T ss_pred             HHHHHHHHHHHHHHHHhe
Confidence            566666777777776654

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=96.77  E-value=0.024  Score=40.07  Aligned_cols=65  Identities=12%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI  180 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~  180 (200)
                      .+.+..-...++++-++-.+-.+.+-+..+.|.....|-.++...-..-.+.-+.+.++..-..+
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~   66 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY   66 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            35667777788888888888888888888888888777766666555555555555555554443

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.029  Score=41.75  Aligned_cols=88  Identities=13%  Similarity=0.148  Sum_probs=51.7

Q ss_pred             HHHHHHhHHHHhH-HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHH
Q 029054          110 QALLKEHASINRS-TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASV  188 (200)
Q Consensus       110 ~~ll~e~~~L~~S-~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~  188 (200)
                      +.+-+|+++.-.+ ...+--+-.....|..+...|+..|.+..+-+..+..-|++.=.=++.+.|+ -.-++..|.++++
T Consensus        28 ~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~  106 (118)
T KOG3385|consen   28 ASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFS  106 (118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHH
Confidence            3444666644433 3445555567778888889999999999887766655554444444444444 2234445555555


Q ss_pred             HHHHHHHHHH
Q 029054          189 CTFLIFIYWV  198 (200)
Q Consensus       189 ~i~~~~~~~~  198 (200)
                      ++.|+++|||
T Consensus       107 lV~~fi~~~~  116 (118)
T KOG3385|consen  107 LVAFFILWVW  116 (118)
T ss_pred             HHHHHHhhee
Confidence            5555544444

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=94.76  E-value=0.11  Score=35.17  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             HhhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Q 029054          146 TFGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYWVT  199 (200)
Q Consensus       146 ~l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~~  199 (200)
                      -+..+.+||..+...+...+ .+.+++.++.-||-=|++|+++.+++++++..++
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~   67 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS   67 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888888887777 5778899999999999987766666665555443

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=6.3  Score=34.09  Aligned_cols=57  Identities=12%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             HHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHH-HHHHHHHHHHHHHHH
Q 029054          140 LVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII-LALVASVCTFLIFIY  196 (200)
Q Consensus       140 L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~I-l~~vi~~~i~~~~~~  196 (200)
                      ..+|.-++.++-=-+.++.-++....+=+.++++-.++++-. +++|.++|+|++++.
T Consensus       241 VvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvl  298 (305)
T KOG0809|consen  241 VVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVL  298 (305)
T ss_pred             HHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHH
Confidence            467888888888888888888888999999999998888643 344444555444443

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=92.52  E-value=0.49  Score=32.01  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=34.4

Q ss_pred             hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054          147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI  193 (200)
Q Consensus       147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~  193 (200)
                      ++.+.+||..+...+...| .+-+++.++.-||-=|++|++..+++++
T Consensus        14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~   61 (70)
T TIGR01149        14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFL   61 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence            5567778888888777777 5778899999999988875544444443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=92.30  E-value=0.46  Score=32.16  Aligned_cols=47  Identities=28%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHH-HHHHHHHHHH
Q 029054          147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILA-LVASVCTFLI  193 (200)
Q Consensus       147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~-~vi~~~i~~~  193 (200)
                      +..++.||.++...+...| .+-++|..+.-||--|++ .||++.++++
T Consensus        17 fne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i   65 (75)
T COG4064          17 FNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMI   65 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3455666666666666665 567889999999998885 5555544444

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=92.16  E-value=0.55  Score=32.45  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHhhccCChHH-HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054          147 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI  193 (200)
Q Consensus       147 l~~~~~rl~~~~~~l~~s~-~~l~~I~rR~~~d~~Il~~vi~~~i~~~  193 (200)
                      ++.+++||.++...+...| .+-+++..+.-||-=|++|++..+++++
T Consensus        17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~   64 (77)
T PRK01026         17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVL   64 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHH
Confidence            5667778888888777777 5778889999999988875544444433

>PRK09546 zntB zinc transporter; Reviewed

Probab=91.41  E-value=8.9  Score=33.26  Aligned_cols=17  Identities=18%  Similarity=0.221  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHhhHH
Q 029054           63 ILQDLTQEFYRLRSSLK   79 (200)
Q Consensus        63 ~L~~~~~e~~rl~~~~~   79 (200)
                      .+..++++.-+++..+.
T Consensus       183 ~l~~lrr~l~~lrr~l~  199 (324)
T PRK09546        183 ELALLRKQLIVMRRYMA  199 (324)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            46666666666665553

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.45  E-value=9.8  Score=32.08  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhHHHHHHHHHHHHHHH-HHHHHHHhhHHh-HHHHHHhhcccc
Q 029054           18 AAENDLESGIDWLLKQLQQVNIQMQDWVS---SGGSEMVSHTLTRHQEILQDLT-QEFYRLRSSLKA-KQEHASLLEDFR   92 (200)
Q Consensus        18 ~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~---~~~~~~~~~~l~r~r~~L~~~~-~e~~rl~~~~~~-~~~R~~Ll~~~~   92 (200)
                      .....+...|+.....+.++++++..+-.   ..|+..+...++.-+..|.+.+ ++|...+..... ..+=..||..+.
T Consensus        87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~  166 (264)
T PF06008_consen   87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQ  166 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888889999999987665   3344455445555555666663 234444443322 223345666553


Q ss_pred             c-cccccCcccCCCCC-HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054           93 E-FDRTRLDLEDGVGS-PEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  168 (200)
Q Consensus        93 ~-~~~~~~d~~~~~~~-~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l  168 (200)
                      . |..+. ....+... -.+.|-+....|......+++..+...++-.-...-+..|.....+...+.+.-..++.+|
T Consensus       167 ~~~~~~~-~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L  243 (264)
T PF06008_consen  167 KWFQKPQ-QENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETL  243 (264)
T ss_pred             HHHhhHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 11111 11101001 1134445555566555555555555555544445555555555555554444433333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>smart00397 t_SNARE Helical region found in SNAREs

Probab=90.17  E-value=2.2  Score=27.33  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=48.1

Q ss_pred             HHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHH
Q 029054          112 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL  168 (200)
Q Consensus       112 ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l  168 (200)
                      +..-...|.+.+..+-++.+++..+-..+..|++.|.++...+..+...+.....-+
T Consensus         7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l   63 (66)
T smart00397        7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL   63 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344556889999999999999999999999999999999999988888776665444

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=89.89  E-value=8.2  Score=32.15  Aligned_cols=49  Identities=14%  Similarity=0.085  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH
Q 029054           24 ESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFY   72 (200)
Q Consensus        24 ~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~   72 (200)
                      .......++++.+-+++++..+.+.+.......+...+..+..+++-+.
T Consensus       120 ~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~  168 (292)
T PF01544_consen  120 VDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLS  168 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhh
Confidence            3444455555566666666666444433222334444444444443333

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=89.56  E-value=11  Score=31.39  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             HHHHHHHhHHHHh----HHHHHHH-HHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHH
Q 029054          109 EQALLKEHASINR----STGQMDS-VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA  183 (200)
Q Consensus       109 ~~~ll~e~~~L~~----S~~~~d~-~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~  183 (200)
                      .|+.+..++.++.    |-..+-. +-..+.+.-+.|..-++++..+..-+..-...|+-.+.=+.+=...+.-+++-++
T Consensus       142 ~dq~l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~  221 (244)
T KOG2678|consen  142 VDQQLEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYIT  221 (244)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence            4566655554443    3222222 2244555566777888888888766666556666666666666555666677777


Q ss_pred             HHHHHHHHHHHHHHH
Q 029054          184 LVASVCTFLIFIYWV  198 (200)
Q Consensus       184 ~vi~~~i~~~~~~~~  198 (200)
                      .+|++|+.|++.+++
T Consensus       222 miI~v~~sFVsMili  236 (244)
T KOG2678|consen  222 MIIFVILSFVSMILI  236 (244)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            778788877755543

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.11  E-value=1.6  Score=37.41  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH
Q 029054          118 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  172 (200)
Q Consensus       118 ~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~  172 (200)
                      +-.++..++.+....|..|+..|..|++.|.++...+-.+...+-.+.+.|..++
T Consensus        80 St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~  134 (273)
T KOG3065|consen   80 STRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK  134 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            5556667788888999999999999999999999999998888888777776554

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=87.06  E-value=5.4  Score=25.68  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhh
Q 029054          117 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK  175 (200)
Q Consensus       117 ~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~  175 (200)
                      +.|..=+..+.++-+++..+-..+..|.+.|.++...+..+...+...+.=|....++.
T Consensus         4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35666667778888999999999999999999999999999999988887777766554

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.24  E-value=22  Score=30.95  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             HHHhHHHHHHHHH-HHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHH-HHHHh
Q 029054          118 SINRSTGQMDSVI-SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS-SIKRK  174 (200)
Q Consensus       118 ~L~~S~~~~d~~l-~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~-~I~rR  174 (200)
                      .|+.|.+.+.++. +++.-    -..|.+++..+-.-+..+...+.....=++ .+...
T Consensus       210 ~LEksi~ELhqlFlDMa~L----Ve~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~q  264 (297)
T KOG0810|consen  210 KLEKSIRELHQLFLDMAVL----VESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQ  264 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445544444442 34333    367999999999999999988888554444 44433

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.66  E-value=8.5  Score=33.58  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             HHHHHHhHHHHhHHHH-HHHHHHH----------HHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhc
Q 029054          110 QALLKEHASINRSTGQ-MDSVISQ----------AQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD  178 (200)
Q Consensus       110 ~~ll~e~~~L~~S~~~-~d~~l~~----------g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d  178 (200)
                      +.+-.|+.+|.+--.- +|++..+          =--.-+-+-.|-..|..+.+=..++..++..+|.=|+++.+...+.
T Consensus       214 Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~  293 (316)
T KOG3894|consen  214 QLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGL  293 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccc
Confidence            3455788888776653 3333322          1222345667888899999988899999999999999998887666


Q ss_pred             h-HHHHHHH
Q 029054          179 T-IILALVA  186 (200)
Q Consensus       179 ~-~Il~~vi  186 (200)
                      + |++++++
T Consensus       294 r~~~lf~ll  302 (316)
T KOG3894|consen  294 RVFLLFFLL  302 (316)
T ss_pred             hhHHHHHHH
Confidence            5 5655443

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=84.17  E-value=10  Score=25.48  Aligned_cols=33  Identities=12%  Similarity=0.119  Sum_probs=20.7

Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 029054          166 QILSSIKRKKSMDTIILALVASVCTFLIFIYWV  198 (200)
Q Consensus       166 ~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~~~  198 (200)
                      ++-..|+.=..-.+|+++.+++.++.+++.+++
T Consensus        38 ~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i~   70 (71)
T PF10779_consen   38 NLNKQLEKIKSNTKWIWRTIIGAIITAIIYLII   70 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444455688888888777777665554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.76  E-value=19  Score=29.53  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHH
Q 029054          164 VNQILSSIKRKKSMDTIILALVASV  188 (200)
Q Consensus       164 s~~~l~~I~rR~~~d~~Il~~vi~~  188 (200)
                      ...-+....+....+.|+.||.+++
T Consensus       158 l~~~~~~~~~~~~~~wf~~Gg~v~~  182 (206)
T PRK10884        158 ANLQLDDKQRTIIMQWFMYGGGVAG  182 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHchHHHH
Confidence            3444455566667777777644444

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=83.58  E-value=12  Score=25.93  Aligned_cols=63  Identities=11%  Similarity=0.231  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 029054          127 DSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIY  196 (200)
Q Consensus       127 d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~~  196 (200)
                      |.+++.|. -+++|..+=+.|...-..+..      .+..+=+.+-.+..+=.+|+++++++++++++++
T Consensus        24 ~~ll~Rge-~L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~   86 (89)
T PF00957_consen   24 DKLLERGE-KLEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIV   86 (89)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCc-hHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHH
Confidence            44444443 355555555555554444442      3445556777888888888887765555555544

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=83.26  E-value=17  Score=31.28  Aligned_cols=76  Identities=13%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH-HhhhhchHHHHHHHHHHHHHHHHHH
Q 029054          122 STGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK-RKKSMDTIILALVASVCTFLIFIYW  197 (200)
Q Consensus       122 S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~-rR~~~d~~Il~~vi~~~i~~~~~~~  197 (200)
                      =++.+.|+-++=...-.-..+|.+...++---+.++..++-..++=|.+.. -++++.++-+++++.+||+.+++..
T Consensus       200 l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l  276 (283)
T COG5325         200 LARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSL  276 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence            333333333333333333467888888888888888877777666555554 4466667777666666665555443

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=81.83  E-value=4.8  Score=26.46  Aligned_cols=25  Identities=4%  Similarity=-0.081  Sum_probs=13.9

Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHH
Q 029054          167 ILSSIKRKKSMDTIILALVASVCTF  191 (200)
Q Consensus       167 ~l~~I~rR~~~d~~Il~~vi~~~i~  191 (200)
                      ...+-.+|.++-++|+.++++++++
T Consensus        27 ~~~k~qk~~~~~~~i~~~~~i~~l~   51 (59)
T PF09889_consen   27 EYRKRQKRMRKTQYIFFGIFILFLA   51 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666667777655544333

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C

Probab=81.02  E-value=2.6  Score=26.66  Aligned_cols=28  Identities=4%  Similarity=0.024  Sum_probs=18.2

Q ss_pred             HHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 029054          166 QILSSIKRKKSMDTIILALVASVCTFLI  193 (200)
Q Consensus       166 ~~l~~I~rR~~~d~~Il~~vi~~~i~~~  193 (200)
                      +..+.+-+|-++|++-+.|++.++++++
T Consensus         3 s~~~~~~~~f~~nk~a~~gl~il~~~vl   30 (56)
T PF12911_consen    3 SPWKDAWRRFRRNKLAVIGLIILLILVL   30 (56)
T ss_pred             CHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            3456788899999987755544444333

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=80.94  E-value=35  Score=29.22  Aligned_cols=42  Identities=26%  Similarity=0.397  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054           30 LLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL   78 (200)
Q Consensus        30 ~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~   78 (200)
                      .++++++-+++++..+...+....       -..+..++++.-+++..+
T Consensus       150 ~l~~l~~~~~~le~~l~~~~~~~~-------l~~l~~l~~~l~~l~~~l  191 (318)
T TIGR00383       150 LLENIEDELEELEDEIISGPTSTL-------MDEILSLRTELLALRRSL  191 (318)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHHHHHHHHH
Confidence            334444444555554544333222       223444555555555443

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=80.90  E-value=13  Score=31.38  Aligned_cols=72  Identities=10%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCC----hHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Q 029054          123 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLP----SVNQILSSIKRKKSMDTIILALVASVCTFLIFI  195 (200)
Q Consensus       123 ~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~----~s~~~l~~I~rR~~~d~~Il~~vi~~~i~~~~~  195 (200)
                      .+++.|+-+.=..+-+....|-+...-+.+-+-+.-...+    -..+-++. .|..++++|+.+|+.++.++++++
T Consensus       191 Ekt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~viv~  266 (280)
T COG5074         191 EKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVIVV  266 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHHHH
Confidence            3444444444444445556788887777777766555444    34455666 566777888876544333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2nps_C	81	Vesicle transport through interaction with T- snar	99.41
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	99.2
1vcs_A	102	Vesicle transport through interaction with T- snar	98.8
2qyw_A	102	Vesicle transport through interaction with T-SNAR	98.69
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	98.68
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	98.64
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	98.27
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	97.11
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	96.67
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	95.96
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	93.32
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	93.31
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	91.56
2iub_A	363	CORA, divalent cation transport-related protein; m	87.07
4ev6_A	339	Magnesium transport protein CORA; membrane protein	86.39

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.41  E-value=6.1e-13  Score=92.62  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHhhhhch
Q 029054          108 PEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT  179 (200)
Q Consensus       108 ~~~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR~~~d~  179 (200)
                      +.+.|.+..++|++|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..++.+.++|+.|.||+.+||
T Consensus        10 ~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK   81 (81)
T 2nps_C           10 NTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR   81 (81)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence            446888999999999999999999999999999999999999999999999999999999999999998876

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.20  E-value=1.4e-11  Score=82.20  Aligned_cols=63  Identities=24%  Similarity=0.259  Sum_probs=57.1

Q ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH
Q 029054          111 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  173 (200)
Q Consensus       111 ~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r  173 (200)
                      .|.+..++|++|.+.+.|++++|.+|+.+|+.||++|.++++++.+++..+..+.++|+.|.|
T Consensus         3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R   65 (65)
T 1gl2_C            3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR   65 (65)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence            456778999999999999999999999999999999999999999999999999999999865

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=98.80  E-value=2.1e-08  Score=72.52  Aligned_cols=61  Identities=15%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh---hHHHHHHHHHHHHHHHHHHHHHH
Q 029054           15 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEM---VSHTLTRHQEILQDLTQEFYRLR   75 (200)
Q Consensus        15 ~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~---~~~~l~r~r~~L~~~~~e~~rl~   75 (200)
                      ..+++++....+|+..|+++.++|+||+.|+++.|++.   +..++..|+..|..++++|++++
T Consensus        31 ~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~   94 (102)
T 1vcs_A           31 LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR   94 (102)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999998653   23455555555555555554443

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=98.69  E-value=7.2e-08  Score=69.66  Aligned_cols=59  Identities=8%  Similarity=0.101  Sum_probs=48.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054           16 VDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL   78 (200)
Q Consensus        16 ~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~   78 (200)
                      .+++++....+|+..|+|+.++++||+.|+++.|++.    ...|...|.+|+.++.+++.++
T Consensus        43 ~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~----R~~~~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           43 GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTF----RNPMMSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhhc
Confidence            5689999999999999999999999999999998753    4566667777777777766543

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=98.68  E-value=5.2e-08  Score=69.77  Aligned_cols=62  Identities=11%  Similarity=0.092  Sum_probs=47.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHHHHHHHHHH-HHhhHH
Q 029054           14 TKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSG--GSEMVSHTLTRHQEILQDLTQEFYR-LRSSLK   79 (200)
Q Consensus        14 ~~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~--~~~~~~~~l~r~r~~L~~~~~e~~r-l~~~~~   79 (200)
                      ..+|++++....+|+..++++.++++||++|+++.  ||+.    ...|...|.+|+.++.+ ++..++
T Consensus        26 ~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~----R~~~~~klr~Yk~dl~~~lk~~lk   90 (97)
T 3onj_A           26 SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASE----RATYKAKLREWKKTIQSDIKRPLQ   90 (97)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999  8643    34555555555555555 555443

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=98.64  E-value=1.1e-07  Score=65.64  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHH
Q 029054          110 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK  172 (200)
Q Consensus       110 ~~ll~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~  172 (200)
                      +.+-+..+++++|.+++.++.++|.+|+.+|+.||++|.+++++|.++++.+..+.++|+.|.
T Consensus        16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            345577789999999999999999999999999999999999999999999999999999886

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=98.27  E-value=1e-06  Score=56.26  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054          120 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  171 (200)
Q Consensus       120 ~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I  171 (200)
                      ++|.+.+.++.+.|..|+..|..||++|.++.+.|.++++.+..+.++|+.|
T Consensus         3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m   54 (54)
T 1nhl_A            3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999988753

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.11  E-value=0.0018  Score=43.29  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR  173 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~r  173 (200)
                      -++-+++.+++.+..+.|..|+..|..|++.|.++...|..++..+..+..-+..|+.
T Consensus        11 l~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C           11 VASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3566788899999999999999999999999999999999999999999888887764

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=96.67  E-value=0.00098  Score=46.00  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=47.9

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI  171 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I  171 (200)
                      -++-+++.+++.+..+.|..|+..|..|++.|.++...|-.+++.+..+.+.|+.|
T Consensus        26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L   81 (83)
T 1l4a_C           26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35777888889999999999999999999999999999999998887776665544

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=95.96  E-value=0.059  Score=37.51  Aligned_cols=71  Identities=10%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCCh----HHHHHHHHHHhhhhchHHHHHHH
Q 029054          116 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPS----VNQILSSIKRKKSMDTIILALVA  186 (200)
Q Consensus       116 ~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~----s~~~l~~I~rR~~~d~~Il~~vi  186 (200)
                      +++|...+..+||+-++-..-.+.+-+..+.|....+|-.+....-..    +.++=+.|-.+..+=++|+++++
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv   78 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVIC   78 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777777777666665554443222    22333444444555455555544

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=93.32  E-value=1.4  Score=31.39  Aligned_cols=56  Identities=5%  Similarity=-0.060  Sum_probs=40.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHh
Q 029054          119 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK  174 (200)
Q Consensus       119 L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR  174 (200)
                      +.+=.+.+.++-++-...-.-..+|.+.+.++..-+.++..++...+.=+.+-.+.
T Consensus        23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y   78 (109)
T 3hd7_B           23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   78 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444455555555678999999999999999999999998777655433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=93.31  E-value=0.041  Score=40.28  Aligned_cols=61  Identities=10%  Similarity=0.272  Sum_probs=43.4

Q ss_pred             HHhHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhccCChHHHHHHHHHHh
Q 029054          114 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK  174 (200)
Q Consensus       114 ~e~~~L~~S~~~~d~~l~~g~~~l~~L~~Qr~~l~~~~~rl~~~~~~l~~s~~~l~~I~rR  174 (200)
                      .+.++|...+..+||+-++-..-.+.+-+..+.|....+|=.++...-..-.+.-+.+.++
T Consensus        30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk   90 (119)
T 2kog_A           30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK   90 (119)
T ss_dssp             SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888888999999999899899999888888887776655554444444444444444

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=91.56  E-value=0.22  Score=28.10  Aligned_cols=21  Identities=10%  Similarity=0.352  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 029054          180 IILALVASVCTFLIFIYWVTK  200 (200)
Q Consensus       180 ~Il~~vi~~~i~~~~~~~~~K  200 (200)
                      ++++.++++.++.+++|||+|
T Consensus        12 IVvgdi~~t~~i~~~vy~~~r   32 (33)
T 2l34_A           12 IVVGDLVLTVLIALAVYFLGR   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             EeHHHHHHHHHHHHHHhheec
Confidence            466777778888888999886

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=87.07  E-value=13  Score=31.48  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029054           27 IDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLK   79 (200)
Q Consensus        27 Ie~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~   79 (200)
                      .-..++++++-++.++..+...|....       -..+..++++.-.++..+.
T Consensus       193 y~~~l~~l~~~id~lE~~v~~~~~~~~-------l~~l~~lrr~l~~lrr~l~  238 (363)
T 2iub_A          193 YFVLLEKIDDEIDVLEEEVLERPEKET-------VQRTHQLKRNLVELRKTIW  238 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCCHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHHHHHHHHHH
Confidence            334466666667777777665543322       2235555555555555443

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=86.39  E-value=14  Score=31.01  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029054           28 DWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSL   78 (200)
Q Consensus        28 e~~l~e~~~~~~~m~~~v~~~~~~~~~~~l~r~r~~L~~~~~e~~rl~~~~   78 (200)
                      ...++++++-++.++..+...+.......       +..++++.-.++..+
T Consensus       170 ~~~l~~l~~~i~~lE~~l~~~~~~~~l~~-------l~~lrr~l~~lrr~l  213 (339)
T 4ev6_A          170 SRILMNLEDELEELEDKLLAGYDREVMEK-------ILGLRKTLVYFHKSL  213 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTCCCHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHHHHHHHHHHHHHh
Confidence            44455555666666666655444332233       444455555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	98.94
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	81.29

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.8e-09  Score=74.59  Aligned_cols=61  Identities=15%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh---HHHHHHHHHHHHHHHHHHHHHH
Q 029054           15 KVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMV---SHTLTRHQEILQDLTQEFYRLR   75 (200)
Q Consensus        15 ~~~~~~~~~~~~Ie~~l~e~~~~~~~m~~~v~~~~~~~~---~~~l~r~r~~L~~~~~e~~rl~   75 (200)
                      .+|++++....+|+..|+++.++++||++||++.||+.+   ..++..|+..|..++++|++.+
T Consensus        24 ~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a~   87 (89)
T d1vcsa1          24 LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR   87 (89)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            467899999999999999999999999999999997533   3455555555555555555443

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.29  E-value=1.5  Score=28.52  Aligned_cols=52  Identities=10%  Similarity=0.177  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCC---chhhHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Q 029054           30 LLKQLQQVNIQMQDWVSSGG---SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAK   81 (200)
Q Consensus        30 ~l~e~~~~~~~m~~~v~~~~---~~~~~~~l~r~r~~L~~~~~e~~rl~~~~~~~   81 (200)
                      .+.+++.-++..+..+....   .+-.......|...|.+|+.|+.+++..++.+
T Consensus        32 ~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~a   86 (89)
T d1vcsa1          32 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44445555555555554443   11222578899999999999999999988654