Citrus Sinensis ID: 029055

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MAASANPVGNNNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHcccccccccccHHcccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maasanpvgnnnnqegssaaqkstangvsvnssnnggnspavidtsqtasalrhnsgistewtpeEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTkkengkrrkedhnsarknkdrkekatdssakssshlaarpngpsyappmipmdtddgisyraiggitGDILEQNAQMFNQISANFGTFQLE
Flexible Loop (DISEMBL)
maasanpvgnnnnqegssaAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNsgistewtpEEQSILEDLLAKYASDSAVNRYAKiakqlkdktvrdvalrcrwmtkkengkrrkedhnsarknkdrkekatdssakssshlaarpngpsyappMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE
Low Complexity Region (SEG)
MAASANPVGNNNNQEGSSAAQKSTAngvsvnssnnggnsPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE
Disordered region (IsUnstruct)
********************************************************************ILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM*********************************************************GISYRAIGGITGDILEQNAQMFNQISANFG*****
Disordered Region (DISOPRED)
********************************************************GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW*****************************************************************GGITGDILEQNAQMFNQISANFGTFQ**
Disordered Region (DISEMBL)
********************************SNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK*************************************PNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE
Disordered Region (DISPRO)
**************************************************ALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN**************************************PSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASANPVGNNNNQEGSSAAQKSTANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
15229471	258	uncharacterized protein [Arabidopsis tha	0.985	0.763	0.708	1e-77
6041852	204	unknown protein, 3' partial [Arabidopsis	0.98	0.960	0.707	2e-77
79313157	259	uncharacterized protein [Arabidopsis tha	0.985	0.760	0.705	2e-76
297829308	251	hypothetical protein ARALYDRAFT_478080 [	0.945	0.752	0.705	5e-76
334185162	268	uncharacterized protein [Arabidopsis tha	0.98	0.731	0.703	6e-76
255567192	221	conserved hypothetical protein [Ricinus	0.92	0.832	0.728	8e-74
6466939	197	unknown protein, 5' partial [Arabidopsis	0.705	0.715	0.795	1e-63
79313155	192	uncharacterized protein [Arabidopsis tha	0.87	0.906	0.688	3e-63
224131978	198	predicted protein [Populus trichocarpa]	0.75	0.757	0.75	3e-62
225434010	254	PREDICTED: uncharacterized protein LOC10	0.945	0.744	0.599	4e-58

>gi|15229471|ref|NP_187413.1| uncharacterized protein [Arabidopsis thaliana] gi|27754217|gb|AAO22562.1| unknown protein [Arabidopsis thaliana] gi|332641041|gb|AEE74562.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/206 (70%), Positives = 170/206 (82%), Gaps = 9/206 (4%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGG 174
           KRRKEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIGG
Sbjct: 119 KRRKEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGG 177

Query: 175 ITGDILEQNAQMFNQISANFGTFQLE 200
           ++GD+LEQNAQMFNQ+S NF  FQL 
Sbjct: 178 VSGDLLEQNAQMFNQLSTNFSAFQLH 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6041852|gb|AAF02161.1|AC009853_21 unknown protein, 3' partial [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 170/205 (82%), Gaps = 9/205 (4%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGG 174
           KRRKEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIGG
Sbjct: 119 KRRKEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGG 177

Query: 175 ITGDILEQNAQMFNQISANFGTFQL 199
           ++GD+LEQNAQMFNQ+S NF  FQ+
Sbjct: 178 VSGDLLEQNAQMFNQLSTNFSAFQV 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313157|ref|NP_001030658.1| uncharacterized protein [Arabidopsis thaliana] gi|332641043|gb|AEE74564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/207 (70%), Positives = 170/207 (82%), Gaps = 10/207 (4%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 119 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 177

Query: 174 GITGDILEQNAQMFNQISANFGTFQLE 200
           G++GD+LEQNAQMFNQ+S NF  FQL 
Sbjct: 178 GVSGDLLEQNAQMFNQLSTNFSAFQLH 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829308|ref|XP_002882536.1| hypothetical protein ARALYDRAFT_478080 [Arabidopsis lyrata subsp. lyrata] gi|297328376|gb|EFH58795.1| hypothetical protein ARALYDRAFT_478080 [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (739), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 146/207 (70%), Positives = 169/207 (81%), Gaps = 18/207 (8%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTA------NGVSVNSSNNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK ++      NG +VNS +NGGN+           ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAATNGAAVNSVDNGGNA--------GVGALRH 50

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 51  NPGISTDWTHEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 110

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 111 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 169

Query: 174 GITGDILEQNAQMFNQISANFGTFQLE 200
           G++GD+LEQNAQMFNQ+S+NF  FQL 
Sbjct: 170 GVSGDLLEQNAQMFNQVSSNFSAFQLH 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185162|ref|NP_001189835.1| uncharacterized protein [Arabidopsis thaliana] gi|332641044|gb|AEE74565.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%), Gaps = 10/206 (4%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRK-EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIG 173
           KRRKEDH S+RK+KD+K EKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIG
Sbjct: 119 KRRKEDH-SSRKSKDKKQEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIG 177

Query: 174 GITGDILEQNAQMFNQISANFGTFQL 199
           G++GD+LEQNAQMFNQ+S NF  FQ+
Sbjct: 178 GVSGDLLEQNAQMFNQLSTNFSAFQV 203

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567192|ref|XP_002524577.1| conserved hypothetical protein [Ricinus communis] gi|223536130|gb|EEF37785.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 161/188 (85%), Gaps = 4/188 (2%)

Query: 14  QEGSSAAQK--STANGVSVNSSNNGGNSPAVIDTSQTASALRHNSGISTEWTPEEQSILE 71
           +EG ++AQK  S+ANG  VN+  NGG++    + SQT +ALRH+ GIS EWTP+EQS+LE
Sbjct: 15  EEGGASAQKVASSANGGGVNAVKNGGSNSGA-ENSQTEAALRHSPGISVEWTPDEQSLLE 73

Query: 72  DLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDHNSARKNKDRK 131
           +LL+KYAS+S V RYAKIA QLKDKTVRDVALRCRWMTKKENGKRRKEDH SARKNKDRK
Sbjct: 74  ELLSKYASESIVQRYAKIALQLKDKTVRDVALRCRWMTKKENGKRRKEDH-SARKNKDRK 132

Query: 132 EKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGDILEQNAQMFNQIS 191
           EKA D S KSSSHL  RPNGPSYAPPMIP+D+DDGISY+AIGG TG++LEQNAQ+ +QIS
Sbjct: 133 EKAADPSVKSSSHLTPRPNGPSYAPPMIPVDSDDGISYKAIGGATGELLEQNAQILSQIS 192

Query: 192 ANFGTFQL 199
           ANF +FQ+
Sbjct: 193 ANFASFQI 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6466939|gb|AAF13074.1|AC009176_1 unknown protein, 5' partial [Arabidopsis thaliana]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/142 (79%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 58  ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR 117
           IST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENGKRR
Sbjct: 1   ISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENGKRR 60

Query: 118 KEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITG 177
           KEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+AIGG++G
Sbjct: 61  KEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKAIGGVSG 119

Query: 178 DILEQNAQMFNQISANFGTFQL 199
           D+LEQNAQMFNQ+S NF  FQL
Sbjct: 120 DLLEQNAQMFNQLSTNFSAFQL 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313155|ref|NP_001030657.1| uncharacterized protein [Arabidopsis thaliana] gi|332641042|gb|AEE74563.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 147/183 (80%), Gaps = 9/183 (4%)

Query: 1   MAASANPVGNNNNQEGSSAAQKSTANGVSVNSS------NNGGNSPAVIDTSQTASALRH 54
           MAASANP GNN  QEGSSA QK +++  +  +       +NGGN+ A  D SQT  ALRH
Sbjct: 1   MAASANPSGNN--QEGSSATQKVSSSSAAAANGAAVNSVDNGGNTGAAADNSQTIGALRH 58

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENG 114
           N GIST+WT EEQS+LEDLL KYA++ +V RYAKIA ++KDKTVRDVALRCRWMTKKENG
Sbjct: 59  NPGISTDWTLEEQSLLEDLLVKYATEPSVFRYAKIAMKMKDKTVRDVALRCRWMTKKENG 118

Query: 115 KRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGG 174
           KRRKEDH S+RK+KD+KEKATDSSAKSSSHL   PNGPSYAPPM+P+DTDDGISY+ +  
Sbjct: 119 KRRKEDH-SSRKSKDKKEKATDSSAKSSSHLNVHPNGPSYAPPMMPIDTDDGISYKGLSK 177

Query: 175 ITG 177
           I G
Sbjct: 178 ILG 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131978|ref|XP_002321225.1| predicted protein [Populus trichocarpa] gi|222861998|gb|EEE99540.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 135/152 (88%), Gaps = 2/152 (1%)

Query: 48  TASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW 107
           T S+LRH+ GIS EW+P+EQSIL+DLL+KYAS+S + RYAKIA +LKDKTVRDVALRCRW
Sbjct: 1   TLSSLRHDPGISVEWSPDEQSILDDLLSKYASESNLVRYAKIAMKLKDKTVRDVALRCRW 60

Query: 108 MTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGI 167
           MTKKENGKRRKEDH SARKNKDRKEKATDSS KSSSHL  RPNGPSYA P+IP+D DDG+
Sbjct: 61  MTKKENGKRRKEDH-SARKNKDRKEKATDSSTKSSSHLTTRPNGPSYA-PVIPIDIDDGV 118

Query: 168 SYRAIGGITGDILEQNAQMFNQISANFGTFQL 199
           SY+ IGG TG++LE+NAQ+ +QIS+NF + Q+
Sbjct: 119 SYKDIGGATGELLEKNAQILSQISSNFSSIQV 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434010|ref|XP_002272798.1| PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 148/202 (73%), Gaps = 13/202 (6%)

Query: 5   ANPVGNNNNQEGSSAAQKSTANG------VSVNSSNNGGNSPAVIDTSQTASALRHNSGI 58
           ANP G +  QE   A+      G      V+  S N+G  + AV     TA+A++HN GI
Sbjct: 2   ANPSGTH--QEPGHASSSFNGGGNPSNGSVAPASENSGPPAGAV----ATATAMKHNPGI 55

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRK 118
           + +WTPEEQS+LE+ L  Y+SDS + RYAKIA QL++KTVRDVALRCRWM+KKEN KRRK
Sbjct: 56  AMDWTPEEQSVLEEGLNAYSSDSNIIRYAKIAMQLQNKTVRDVALRCRWMSKKENSKRRK 115

Query: 119 EDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDDGISYRAIGGITGD 178
           EDHN +RK+KD+KEK T+ SAK SSHLA+R N P YA PMIPMD DDGISY+AIGG TG 
Sbjct: 116 EDHNLSRKSKDKKEKVTEPSAK-SSHLASRTNVPPYAMPMIPMDNDDGISYKAIGGSTGQ 174

Query: 179 ILEQNAQMFNQISANFGTFQLE 200
           +LEQNAQ FNQISAN  + Q++
Sbjct: 175 LLEQNAQAFNQISANLASLQIQ 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2196480	258	AT1G10820 "AT1G10820" [Arabido	0.77	0.596	0.354	8e-21
TAIR|locus:2058188	210	AT2G43470 "AT2G43470" [Arabido	0.45	0.428	0.451	3.9e-19
TAIR|locus:2199302	273	AT1G68160 [Arabidopsis thalian	0.75	0.549	0.333	4e-19
TAIR|locus:2036556	254	AT1G60670 [Arabidopsis thalian	0.72	0.566	0.344	6.5e-19
DICTYBASE|DDB_G0286135	412	DDB_G0286135 "ZZ-type zinc fin	0.425	0.206	0.301	0.00017

TAIR|locus:2196480 AT1G10820 "AT1G10820" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 57/161 (35%), Positives = 89/161 (55%)

Query:    40 PAVIDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVR 99
             PAV  +   A+ ++  + +  +W+ EEQ +LE+ LAK   +  +++Y KIA  L DKTVR
Sbjct:    36 PAVDASGSVAAGVKQEAALVMDWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVR 95

Query:   100 DVALRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMI 159
             DVALRCRWMT+K   +R++ED+N+A+    RK   T       S++  +     Y   + 
Sbjct:    96 DVALRCRWMTRK---RRKREDNNAAKNISTRKVVDTSPELNMLSNVPQQ--NALYV--LN 148

Query:   160 PMDTDDGISYRAIGGITGDILEQNAQMFNQISANFGTFQLE 200
              M       +  +     D+L+QNAQ F+QIS N    +L+
Sbjct:   149 NMCHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNLSACKLQ 189

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2058188 AT2G43470 "AT2G43470" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 42/93 (45%), Positives = 56/93 (60%)

Query:    43 IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDS--AVNRYAKIAKQLKDKTVRD 100
             + T   +S L   SGI+  WT  E  IL  LL  Y+SDS  AV RY +I + L+DKT+RD
Sbjct:    11 LTTPSESSLLISRSGIALNWTTAEDDILIQLLDSYSSDSRSAVTRYLQILEFLQDKTIRD 70

Query:   101 VALRCRWMTKKENGKRRKEDHNSARKNK-DRKE 132
             VA R RW+  K+  K++KEDHN     + D +E
Sbjct:    71 VAARSRWIYNKKIAKKKKEDHNGLGTTRVDNEE 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2199302 AT1G68160 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 51/153 (33%), Positives = 84/153 (54%)

Query:    46 SQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC 105
             S + S L+ ++ + +EW+ EEQ IL+  L KY    +++ Y +I   L DK++RD+ALRC
Sbjct:    64 SDSGSGLKLDTSMVSEWSNEEQYILDAGLEKYKDMPSIDMYIQIGNTLPDKSIRDIALRC 123

Query:   106 RWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMDTDD 165
             RW+ +K   +R+ E+ N  R+    K K  +SS+KSS       N  SY        T  
Sbjct:   124 RWLRRK---RRKSEELNCGRRASSSKGKQVESSSKSSIPSVLPHNMASYPFSGPSTSTSK 180

Query:   166 GISYRAIGGITGDILEQNAQMFNQISANFGTFQ 198
              I+   +     +++EQN + F+QI AN  +++
Sbjct:   181 QITSEDLSSYATNLIEQNVRAFSQIRANLSSYK 213

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036556 AT1G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 52/151 (34%), Positives = 84/151 (55%)

Query:    43 IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
             +++  + + L+H + ++ +W+ EEQ ILE  L+K+  +  V +Y KIA  L DK+VRDVA
Sbjct:    35 VNSPTSVTGLKHEASLAVDWSVEEQYILEKGLSKFKDEPQVTKYVKIAATLPDKSVRDVA 94

Query:   103 LRCRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSSHLAARPNGPSYAPPMIPMD 162
             +RC+WMT+K   +R+ E+H++  K   RK    D   K +          +YA  M  M 
Sbjct:    95 MRCKWMTQK---RRKGEEHSTGTKVSYRK--VVDLPPKLNMFSTEPQQNATYA--MNHMC 147

Query:   163 TDDGISYRAIGGITGDILEQNAQMFNQISAN 193
                 + +  +     + L QNAQ F+QIS+N
Sbjct:   148 QSARMPFEGLSDAVMERLRQNAQAFSQISSN 178

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0286135 DDB_G0286135 "ZZ-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 28/93 (30%), Positives = 52/93 (55%)

Query:    60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK-EN---- 113
             T WT EEQ +LE LL KY  +  A +R+ KIA  +K +T + VA R +   KK E     
Sbjct:   197 TYWTEEEQKLLEQLLVKYPEEEVASHRWTKIATHIKGRTPQQVASRTQKFFKKLEKAGLR 256

Query:   114 --GKRRKEDHNSARKNKDRKEKATDSSAKSSSH 144
               G R+K+     ++ + ++++  +++  ++++
Sbjct:   257 IPGSRKKKQSQQQQQQQQQQQQQNNNNNNNNNN 289

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G07565	DNA binding; DNA binding; FUNCTIONS IN- DNA binding; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SANT, DNA-binding (InterPro-IPR001005); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10820.2); Has 92 Blast hits to 92 proteins in 12 species- Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (259 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G21940	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (264 aa)				•					0.411

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	7e-07
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-07
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-04

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106
            WT EE  +L + + KY      N + KIAK+L  +T +    R R
Sbjct: 1   PWTEEEDELLLEAVKKY----GKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR 106
            EWT EE  +L +L+ KY      N + KIAK+L  +T      R R
Sbjct: 2   GEWTEEEDELLIELVKKY----GKNNWEKIAKELPGRTAEQCRERWR 44

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
            WTPEE  +L + + K+ +      ++KIAK L  +T        RW  
Sbjct: 3   PWTPEEDELLIEAVKKHGN----GNWSKIAKHLPGRTDNQCKN--RWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.55
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.39
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.28
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.91
PLN03212	249	Transcription repressor MYB5; Provisional	96.68
PLN03091	459	hypothetical protein; Provisional	96.08
PLN03212	249	Transcription repressor MYB5; Provisional	96.08
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	95.9
PLN03091	459	hypothetical protein; Provisional	95.83
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.38
KOG4167	907	consensus Predicted DNA-binding protein, contains	95.07
KOG0048	238	consensus Transcription factor, Myb superfamily [T	94.9
KOG0048	238	consensus Transcription factor, Myb superfamily [T	94.29
KOG1279	506	consensus Chromatin remodeling factor subunit and	92.24
KOG0724	335	consensus Zuotin and related molecular chaperones	87.01
PF00046	57	Homeobox: Homeobox domain not present here.; Inter	80.15

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.55  E-value=2.2e-07  Score=61.68  Aligned_cols=45  Identities=31%  Similarity=0.541  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|.+++.+|+.+    +|.+||..+| +||..+|-.|.+-+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~----~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD----NWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT----HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc----HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            469999999999999999987    9999999999 99999999887643

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.39  E-value=9.2e-07  Score=55.66  Aligned_cols=45  Identities=38%  Similarity=0.618  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.+|..+|..++..|..    .+|.+||..||+||..||..|++-+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK----NNWEKIAKELPGRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            47999999999999999986    5699999999999999998887654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.28  E-value=2.2e-06  Score=53.33  Aligned_cols=42  Identities=38%  Similarity=0.641  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      .||.||...|..++..|..    .+|.+||..+|+||..||..|+.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~----~~w~~Ia~~~~~rs~~~~~~~~~   42 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK----NNWEKIAKELPGRTPKQCRERWR   42 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc----CCHHHHHhHcCCCCHHHHHHHHH
Confidence            4999999999999999985    57999999999999999988864

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.91  E-value=3.2e-05  Score=52.77  Aligned_cols=43  Identities=35%  Similarity=0.622  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh-hh
Q 029055           62 WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW-MT  109 (200)
Q Consensus        62 WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw-m~  109 (200)
                      ||.||..+|.++...|..     .|.+||..||+||..+|-.|++. +.
T Consensus         1 WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-----DWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS------HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCc-----CHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            999999999999999964     69999999988999999999998 54

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.68  E-value=0.0091  Score=53.44  Aligned_cols=48  Identities=23%  Similarity=0.412  Sum_probs=38.1

Q ss_pred             CCCCC-CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055           55 NSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (200)
Q Consensus        55 ~~~~~-~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~  109 (200)
                      ++.+. ..||.||..+|.+.-..|.     .||.+||..||++|  |++.|=||..
T Consensus        73 ~P~I~kgpWT~EED~lLlel~~~~G-----nKWs~IAk~LpGRT--DnqIKNRWns  121 (249)
T PLN03212         73 RPSVKRGGITSDEEDLILRLHRLLG-----NRWSLIAGRIPGRT--DNEIKNYWNT  121 (249)
T ss_pred             chhcccCCCChHHHHHHHHHHHhcc-----ccHHHHHhhcCCCC--HHHHHHHHHH
Confidence            34444 3799999999988877776     48999999999999  5566777765

>PLN03091 hypothetical protein; Provisional

Probab=96.08  E-value=0.011  Score=56.69  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|-+.-.+|.     .||.+||..||++|--+|--|...+-+|
T Consensus        68 gpWT~EED~lLLeL~k~~G-----nKWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         68 GTFSQQEENLIIELHAVLG-----NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             CCCCHHHHHHHHHHHHHhC-----cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            4699999999999999987     4899999999999976665554444444

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.08  E-value=0.0073  Score=54.04  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-CCcCHHHHHHHh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRC  105 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-P~KTvrDVAlR~  105 (200)
                      ..||+||..+|-++..+|..    .+|.+||..+ +++|.++|-.|.
T Consensus        26 g~WT~EEDe~L~~lV~kyG~----~nW~~IAk~~g~gRT~KQCReRW   68 (249)
T PLN03212         26 GPWTVEEDEILVSFIKKEGE----GRWRSLPKRAGLLRCGKSCRLRW   68 (249)
T ss_pred             CCCCHHHHHHHHHHHHHhCc----ccHHHHHHhhhcCCCcchHHHHH
Confidence            46999999999999999974    4799999988 699999996663

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=95.90  E-value=0.031  Score=39.40  Aligned_cols=48  Identities=17%  Similarity=0.214  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHH---HHHHHHcC-Cc-CHHHHHHHhHhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRY---AKIAKQLK-DK-TVRDVALRCRWMTK  110 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry---~KIAa~LP-~K-TvrDVAlR~rwm~~  110 (200)
                      ...||.||...|.++|..|....    |   .+|+.++. .+ |..+|+.+.+.+-.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~----~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD----WATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc----ccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            35799999999999999998732    4   67877653 55 99999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PLN03091 hypothetical protein; Provisional

Probab=95.83  E-value=0.0092  Score=57.27  Aligned_cols=44  Identities=27%  Similarity=0.585  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-CCcCHHHHHHHhHhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-KDKTVRDVALRCRWMT  109 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-P~KTvrDVAlR~rwm~  109 (200)
                      ..||.||.++|.+++.+|..    ..|.+||..+ ++||.++|-.|  |..
T Consensus        15 g~WTpEEDe~L~~~V~kyG~----~nWs~IAk~~g~gRT~KQCRER--W~N   59 (459)
T PLN03091         15 GLWSPEEDEKLLRHITKYGH----GCWSSVPKQAGLQRCGKSCRLR--WIN   59 (459)
T ss_pred             CCCCHHHHHHHHHHHHHhCc----CCHHHHhhhhccCcCcchHhHH--HHh
Confidence            46999999999999999975    4799999887 49999999555  553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.38  E-value=0.021  Score=55.35  Aligned_cols=55  Identities=24%  Similarity=0.391  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhhhccccccc
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKED  120 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke~~kRRKed  120 (200)
                      -.||.+|.-.|-+|+..|.+|     |.|||..+.+||+.||++|.-.+---++. ++|.|
T Consensus       280 k~WS~qE~~LLLEGIe~ygDd-----W~kVA~HVgtKt~EqCIl~FL~LPieD~~-l~k~~  334 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDD-----WDKVARHVGTKTKEQCILHFLQLPIEDNY-LSKGD  334 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhh-----HHHHHHHhCCCCHHHHHHHHHcCCcchhh-hhccc
Confidence            379999999999999999865     99999999999999999999988765553 44444

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=95.07  E-value=0.036  Score=56.28  Aligned_cols=41  Identities=32%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHH
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL  103 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAl  103 (200)
                      -+..||+.|.+.|.++|-.|.+|     |++|+.||+.|||.+|.-
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~KD-----F~~v~km~~~KtVaqCVe  658 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSKD-----FIFVQKMVKSKTVAQCVE  658 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhccc-----HHHHHHHhccccHHHHHH
Confidence            35689999999999999998876     889999999999999753

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=94.90  E-value=0.04  Score=47.69  Aligned_cols=42  Identities=29%  Similarity=0.525  Sum_probs=36.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw  107 (200)
                      .-.||.||..++-++=++|.     .||.+||..||++|--+|  +=.|
T Consensus        62 rg~fT~eEe~~Ii~lH~~~G-----NrWs~IA~~LPGRTDNeI--KN~W  103 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALLG-----NRWSLIAGRLPGRTDNEV--KNHW  103 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHHC-----cHHHHHHhhCCCcCHHHH--HHHH
Confidence            35799999999999988886     589999999999999988  4446

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=94.29  E-value=0.046  Score=47.30  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHhhhh-hhhccccc
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRWMTK-KENGKRRK  118 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rwm~~-ke~~kRRK  118 (200)
                      .-.||.||..+|-+...+|...    +|.-||..++ +++=+.|  |.||+.. +-+-||..
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~----~W~~i~k~~gl~R~GKSC--RlRW~NyLrP~ikrg~   64 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH----NGTALPKLAGLRRCGKSC--RLRWTNYLRPDLKRGN   64 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC----CcchhhhhcCCCccchHH--HHHhhcccCCCccCCC
Confidence            3579999999999999999987    8999999999 7776665  8899975 44445554

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=92.24  E-value=0.27  Score=47.94  Aligned_cols=58  Identities=17%  Similarity=0.354  Sum_probs=50.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhhhcccc
Q 029055           55 NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR  117 (200)
Q Consensus        55 ~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke~~kRR  117 (200)
                      .....-.||.+|--.|.+++.+|.++     |.|||..+..||..||.+++..+--++.-...
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~dd-----W~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~  306 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGDD-----WNKVADHVGTKSQEQCILKFLRLPIEDPYLAK  306 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhccc-----HHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence            45566789999999999999999865     88999999999999999999988777665544

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=87.01  E-value=0.83  Score=40.82  Aligned_cols=53  Identities=25%  Similarity=0.257  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCC-c--hhhHHHHHHHHcCC-cCHHHHHHHhHhhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASD-S--AVNRYAKIAKQLKD-KTVRDVALRCRWMTKKE  112 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e-~--~v~Ry~KIAa~LP~-KTvrDVAlR~rwm~~ke  112 (200)
                      ..|+.++.+.++.+|..|..+ +  ..++|.+++++||. +++.|+.-++.-...--
T Consensus        32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v   88 (335)
T KOG0724|consen   32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDV   88 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHH
Confidence            459999999999999999974 2  66999999999999 99999998887775443

>PF00046 Homeobox: Homeobox domain not present here

Probab=80.15  E-value=7.2  Score=25.74  Aligned_cols=47  Identities=26%  Similarity=0.461  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..+|.++..+||+.... ...+.......||..| +-|..+|   -.|...+
T Consensus         5 ~~~t~~q~~~L~~~f~~-~~~p~~~~~~~la~~l-~l~~~~V---~~WF~nr   51 (57)
T PF00046_consen    5 TRFTKEQLKVLEEYFQE-NPYPSKEEREELAKEL-GLTERQV---KNWFQNR   51 (57)
T ss_dssp             SSSSHHHHHHHHHHHHH-SSSCHHHHHHHHHHHH-TSSHHHH---HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-hccccccccccccccc-ccccccc---ccCHHHh
Confidence            56899999999999997 6667778999999999 8888888   4677654

; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	7e-11
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	7e-09
2cjj_A	93	Radialis; plant development, DNA-binding protein,	3e-07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	4e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	3e-04
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	5e-04
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	5e-04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	9e-04

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.0 bits (132), Expect = 7e-11
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 62  WTPEEQSILEDLLAKY-ASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK 111
           WT EEQ  LE LL KY   +    R+ KIA +L ++T + VA + +    K
Sbjct: 11  WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 44  DTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL 103
             S  +            WT  +Q +LE  L +Y   S+ + + KIA+ +  K+  D   
Sbjct: 3   SGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIA 61

Query: 104 RCRWMTK 110
           R + +  
Sbjct: 62  RYKLLVS 68

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 55  NSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM----TK 110
             G    W+ +E    E  LA Y  D+  +R+A +A+ ++ +T  +V      +      
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKDTP-DRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 111 KENGK 115
            E+GK
Sbjct: 63  IESGK 67

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 44  DTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDV 101
           D     S +    G    W   E    E  L+    D+  +R+ K+A+ +K +T  +V
Sbjct: 5   DDDDKGSHMASTRGSGRPWKFSENIAFEIALSFTNKDTP-DRWKKVAQYVKGRTPEEV 61

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 8e-06
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 8/31 (25%)

Query: 65 EEQSI--LEDLLAKYASDS----AVNRYAKI 89
          E+Q++  L+  L  YA DS    A+   A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK--ATM 46

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 43  IDTSQTASALRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA 102
           +      S+ R N      WT EE    +  L ++  +     ++ IA+ +  KTV    
Sbjct: 1   MHHHHHHSSGRENLY-FQGWTEEEMGTAKKGLLEHGRN-----WSAIARMVGSKTVSQCK 54

Query: 103 LRCRWMTKKENGKRRKEDHNSARKNKDRKEKATD 136
                  K++N     + H    + +    +   
Sbjct: 55  NFYFNYKKRQNLDEILQQHKLKMEKERNARRKKK 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 41/175 (23%)

Query: 52  LRHNSGISTE-----WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVR--DVALR 104
              ++ I T      W    +S +  ++ K    S V       KQ K+ T+    + L 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE------KQPKESTISIPSIYLE 434

Query: 105 CRWMTKKENGKRRKEDHNSARKNKDRKEKATDSSAKSSS------------HLAARPNGP 152
            +   K EN       H S   +     K  DS                  HL    +  
Sbjct: 435 LK--VKLEN---EYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 153 SYAP-PMIPMDTD--------DGISYRAIGGITGDILEQNAQMFNQISANFGTFQ 198
                 M+ +D          D  ++ A G I  + L+Q       I  N   ++
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYE 542

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKEN 113
            WT  E+ I +D   ++  +     +  IA  L+ K+V D  L      K EN
Sbjct: 14  VWTDHEKEIFKDKFIQHPKN-----FGLIASYLERKSVPDCVLYYYLTKKNEN 61

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 56  SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ-LKDKTVRDVALRCRWMTKKENG 114
           SGI   WT +E       L +Y  +     + +I K+ L +K   ++ +   +  KK +G
Sbjct: 6   SGIEKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGEL-ITFYYYWKKTSG 59

Query: 115 K 115
            
Sbjct: 60  P 60

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT--KKENGKRR 117
           T WT EE ++L   + +Y       ++A IAK    +T  D+ ++ RW+T   K    + 
Sbjct: 63  TPWTAEEDALLVQKIQEYG-----RQWAIIAKFFPGRT--DIHIKNRWVTISNKLGIPQT 115

Query: 118 KEDHNSARKN 127
           ++       +
Sbjct: 116 QQMLEHHHHH 125

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKE 119
            W+PEE  +L+   A+Y       ++ KI+K LK+++  D  +R RWM    +  + ++
Sbjct: 55  PWSPEEDMLLDQKYAEYG-----PKWNKISKFLKNRS--DNNIRNRWMMIARHRAKHQK 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.36
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.31
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.2
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.19
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.16
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.97
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.71
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.64
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.55
2crg_A	70	Metastasis associated protein MTA3; transcription	98.49
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.49
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.38
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.2
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.17
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.11
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.1
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.0
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.97
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.93
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.15
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.85
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.83
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.82
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.78
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.77
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.74
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.68
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.62
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.6
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.51
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.33
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.32
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.18
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.17
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.14
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.06
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.82
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.5
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.47
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	96.25
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.91
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	95.85
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.42
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.17
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	90.94
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	90.67
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.15

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=1.1e-12  Score=95.65  Aligned_cols=51  Identities=12%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||+++||++|+.|+.+.+ +||.+||+++|+||+.||..|+..+...
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp-~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKP-GFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSS-SHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCc-cHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            46999999999999999999988 8999999999999999999999988443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.31  E-value=1.4e-13  Score=100.97  Aligned_cols=48  Identities=23%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      .+..||.||+++||.+|++||.+++ +||.|||++||+||+.||..+++
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tp-dRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTP-DRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCC-SSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCC-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            3567999999999999999999998 99999999999999999987764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.20  E-value=3.3e-11  Score=87.09  Aligned_cols=51  Identities=29%  Similarity=0.576  Sum_probs=46.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ...||.||+++||.+|++|+.+++ +||.+||+.| +||+.||..|++-|.+.
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~-~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTP-GRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCC-cHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            457999999999999999999987 8999999998 89999999998888543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.19  E-value=3.3e-11  Score=91.03  Aligned_cols=52  Identities=23%  Similarity=0.509  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ...||.||+++|+++|.+|+.+.+ .||.+||..||+||+.||..|++-+.++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~-~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTP-DRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCC-chHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999876 8999999999999999999999888644

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=8e-11  Score=85.33  Aligned_cols=52  Identities=27%  Similarity=0.470  Sum_probs=47.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      ....||.||+++|+++|.+|+.+.+ .||.+||.+||+||..||-.|+.-|.+
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~-~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSH-HHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCC-chHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3457999999999999999998866 899999999999999999999887754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1.3e-09  Score=77.46  Aligned_cols=52  Identities=38%  Similarity=0.551  Sum_probs=46.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDS-AVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~-~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||+.+|+++|.+|..+. ...+|.+||..||+||.+||..|++++-.+
T Consensus         9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999865 458999999999999999999999666544

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1.5e-08  Score=70.10  Aligned_cols=43  Identities=28%  Similarity=0.449  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC  105 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~  105 (200)
                      ....||+||.++|+++|.+|+.     +|.+||..||+||+.||..+.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Y   53 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYY   53 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHH
Confidence            3467999999999999999974     699999999999999987653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=5.8e-08  Score=67.86  Aligned_cols=46  Identities=24%  Similarity=0.388  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH-HcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||+||.++||++|.+|.++     |.+||. +||+||+.||. +.=+|-+|
T Consensus        10 ~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v-~fYY~wKk   56 (63)
T 2yqk_A           10 KCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELI-TFYYYWKK   56 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHH-HHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHH-HHHhcccC
Confidence            579999999999999999997     899998 69999999995 34445444

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.55  E-value=9e-08  Score=69.85  Aligned_cols=51  Identities=20%  Similarity=0.426  Sum_probs=43.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           53 RHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        53 K~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      |........||.||..+|.+++.+|.     .+|.+||..||+||.++|..|..-+
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            33444567899999999999999999     5899999999999999998876544

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.49  E-value=2.3e-07  Score=66.16  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH-HcCCcCHHHHHHHhHhhhhhhhc
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKENG  114 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~~ke~~  114 (200)
                      ...||+||.++||++|.+|.++     |.+|+. +||+||+.||..=+=--++.++.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y   59 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTDRY   59 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCCSS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHHhhcCCchH
Confidence            4579999999999999999997     899999 79999999998655432334433

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.49  E-value=1.7e-07  Score=66.27  Aligned_cols=47  Identities=36%  Similarity=0.540  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.+++.+|..     +|.+||..||+||..+|-.|.+.+-++
T Consensus        10 ~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A           10 VKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999987     899999999999999999998887655

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.38  E-value=5.2e-07  Score=61.84  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ...||.||..+|.+++.+|..    .+|.+||..||+||.++|..|...+
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~   53 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKY   53 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            357999999999999999985    4799999999999999998887654

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.27  E-value=1.6e-06  Score=59.25  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-CcCHHHHHHHhHh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-DKTVRDVALRCRW  107 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-~KTvrDVAlR~rw  107 (200)
                      ...||.||..+|.+++.+|..    .+|.+||..|| +||.++|..|...
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~   54 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL----GNWADIADYVGNARTKEECRDHYLK   54 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT----TCHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CCHHHHHHHHCCCCCHHHHHHHHHH
Confidence            457999999999999999974    58999999999 9999999877654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.20  E-value=2e-06  Score=56.81  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..+|-.|.+.+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            47999999999999999975    4799999999999999998776543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.17  E-value=3e-06  Score=57.57  Aligned_cols=45  Identities=20%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..+|-.|.+.+
T Consensus         9 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            9 VKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRV   53 (60)
T ss_dssp             SCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHH
Confidence            47999999999999999974    4799999999999999997776654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=3e-06  Score=58.69  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke  112 (200)
                      ..||.||..+|.++...|..     +|.+||. ||+||.++|-.|.+.+-.+.
T Consensus        10 ~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A           10 TEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             CCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence            47999999999999998874     8999999 99999999988888776553

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.10  E-value=3.6e-06  Score=55.69  Aligned_cols=43  Identities=35%  Similarity=0.544  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..+|-.|..
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~   46 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWH   46 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHH
Confidence            47999999999999999974    46999999999999999876654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=7.9e-06  Score=57.13  Aligned_cols=46  Identities=26%  Similarity=0.433  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~  109 (200)
                      -.||.||..+|.+++.+|..    .+|.+||..||++|.++|-.|.+.+-
T Consensus        10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A           10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWL   55 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence            37999999999999999974    47999999999999999977765543

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.00  E-value=1.1e-05  Score=53.67  Aligned_cols=47  Identities=30%  Similarity=0.372  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTK  110 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~~  110 (200)
                      ..||+||..+|.++..+|..    .+|.+||..+|  ++|..||-.|.+-+.+
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            46999999999999999973    47999999999  9999999877666544

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.98  E-value=1.1e-05  Score=69.97  Aligned_cols=47  Identities=26%  Similarity=0.374  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~  109 (200)
                      ....||.||..+|+++|.+|..+     |.+||..||+||+.+|-..+.+..
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~k  178 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYR  178 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999876     999999999999999977655443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.97  E-value=1.1e-05  Score=60.40  Aligned_cols=48  Identities=27%  Similarity=0.598  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKE  112 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~ke  112 (200)
                      ..||.||..+|.+++..|..     +|.+||..||++|-.+|-.|.+-+.++.
T Consensus        54 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           54 DPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence            47999999999999999984     7999999999999999988888776653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.93  E-value=9.7e-06  Score=60.05  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ...||.||..+|.+++.+|..     +|.+||..||++|..+|--|.+-+-++
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            357999999999999999974     799999999999999988887655443

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.15  E-value=1.4e-06  Score=64.33  Aligned_cols=47  Identities=23%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.+++..|..     +|.+||..||++|..+|-.|...+-++
T Consensus        17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            36999999999999999964     699999999999999998887655444

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.85  E-value=2.2e-05  Score=58.83  Aligned_cols=43  Identities=21%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC  105 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~  105 (200)
                      ....||+||..+|+++|..|+++     |-+||..||+||+.||..=+
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY   84 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence            45679999999999999999864     78999999999999998543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.83  E-value=1.9e-05  Score=60.75  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.+++.+|..     +|.+||..||++|-.+|--|...+.+|
T Consensus        63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            36999999999999999984     699999999999999998887776655

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.82  E-value=1.7e-05  Score=60.86  Aligned_cols=47  Identities=30%  Similarity=0.422  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.+++.+|..     +|.+||..||++|..+|-.|.+-+.+|
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            57999999999999999984     799999999999999998887766543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.78  E-value=2.3e-05  Score=57.99  Aligned_cols=45  Identities=31%  Similarity=0.468  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..+|-.|.+-+
T Consensus         5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNH   49 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence            47999999999999999975    4699999999999999998776544

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.77  E-value=2.8e-05  Score=58.17  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw  107 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|.++|-.|..-
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNN   45 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHH
Confidence            36999999999999999985    479999999999999999877554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.74  E-value=9.4e-05  Score=51.67  Aligned_cols=47  Identities=28%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMT  109 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~  109 (200)
                      ...||+||..+|.++..+|..    ..|.+||..+|  ++|..||--|.+=|.
T Consensus        11 k~~WT~eED~~L~~~V~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~   59 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMK   59 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCC----CchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence            357999999999999999964    36999999977  999988877766554

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.68  E-value=0.00014  Score=50.68  Aligned_cols=50  Identities=28%  Similarity=0.320  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMTKK  111 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~~k  111 (200)
                      ....||.||..+|.++..+|..    .+|.+||..||  ++|..||-.|.+-+-..
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            4467999999999999999963    47999999999  99999997776665443

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.67  E-value=6.3e-05  Score=54.27  Aligned_cols=51  Identities=29%  Similarity=0.459  Sum_probs=41.5

Q ss_pred             cCCCCC-CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           54 HNSGIS-TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        54 ~~~~~~-~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      +++.+. ..||+||..+|.++..+|..     +|.+||..| ++|..+|--|.+.|.+
T Consensus        17 ldP~i~k~~wT~EED~~L~~l~~~~G~-----kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           17 QGDRNHVGKYTPEEIEKLKELRIKHGN-----DWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             --CCCCCCSSCHHHHHHHHHHHHHHSS-----CHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            344444 47999999999999999985     499999999 9999998888776643

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.66  E-value=4.7e-05  Score=58.56  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ...||.||..+|.++..+|..     +|.+||..||++|.++|..|.+-.
T Consensus        11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~   55 (126)
T 3osg_A           11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNY   55 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhh
Confidence            357999999999999999964     699999999999999998776654

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.62  E-value=4.9e-05  Score=60.15  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ...||.||..+|.+++..|..     +|.+||..||++|--+|--|...+.++
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            357999999999999999984     899999999999999988887766543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.60  E-value=7.3e-05  Score=57.30  Aligned_cols=45  Identities=29%  Similarity=0.457  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..+|-.|..-+
T Consensus        28 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~   72 (128)
T 1h8a_C           28 GPWTKEEDQRVIEHVQKYGP----KRWSDIAKHLKGRIGKQCRERWHNH   72 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHTCS----CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence            57999999999999999985    3699999999999999998776544

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.51  E-value=0.00011  Score=56.84  Aligned_cols=47  Identities=28%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.++...|..     +|.+||..||++|-.+|--|..-+-++
T Consensus        55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~  101 (131)
T 3zqc_A           55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISK  101 (131)
T ss_dssp             SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred             CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            46999999999999999984     699999999999999987776655554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.33  E-value=7.9e-05  Score=57.55  Aligned_cols=45  Identities=11%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      -.||.||..+|.+++.+|..    ..|.+||..||++|.++|-.|++-.
T Consensus         3 g~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~   47 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGP----QNWPRITSFLPNRSPKQCRERWFNH   47 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS----CCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCc----CCHHHHHHHHCCCCHHHHHHHHhhc
Confidence            36999999999999999974    3699999999999999997776433

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.32  E-value=0.00032  Score=49.72  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH---HcCCcCHHHHHHHhHhhhhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAK---QLKDKTVRDVALRCRWMTKKEN  113 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa---~LP~KTvrDVAlR~rwm~~ke~  113 (200)
                      ....||.||...|.++..+|..     .|.+|+.   .++++|-=|+.-|+|-|.+++.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~   60 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS   60 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence            4568999999999999999974     6999994   6889999999999999987753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.18  E-value=0.00039  Score=54.94  Aligned_cols=48  Identities=29%  Similarity=0.436  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      ...||.||..+|.++..+|..    .+|.+||..||++|..+|-.|.+-+-.
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~  105 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLN  105 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred             CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            357999999999999999975    479999999999999999877665433

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.17  E-value=0.00059  Score=64.27  Aligned_cols=46  Identities=26%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHh
Q 029055           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRW  107 (200)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rw  107 (200)
                      .+...||.||..+|.++|.+|..+     |.+||..|++||+.+|-.-+.|
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~  423 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVN  423 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHH
Confidence            346789999999999999999875     9999999999999999886654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.14  E-value=0.0036  Score=47.74  Aligned_cols=57  Identities=19%  Similarity=0.318  Sum_probs=45.9

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      ++......+.||.||.+++-....+-.  +..++|..||..|.||+.-+|-.|++-|-+
T Consensus        26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G--~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           26 VSSTGEKVVLWTREADRVILTMCQEQG--AQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTT--SCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             ecCCCCEEEEeccccCHHHHHHHHhcC--CChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            566677788999999988766655533  233689999999999999999999998754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.06  E-value=0.001  Score=48.95  Aligned_cols=47  Identities=11%  Similarity=0.230  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH----cCCcCHHHHHHHhHhhhhh
Q 029055           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~----LP~KTvrDVAlR~rwm~~k  111 (200)
                      .||.||..+|-++..+|...    +|.+|+..    ||++|-.||-.|.+=|.++
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g----~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC----CcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            59999999999999999853    89999997    9999988887777766554

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.82  E-value=0.00018  Score=67.71  Aligned_cols=48  Identities=23%  Similarity=0.471  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ....||.+|.++|+++|.+|+++     |.+|+..||+||+.||. ++-+|-+|
T Consensus       188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V-~yYY~WKK  235 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLV-KFYYSWKK  235 (482)
T ss_dssp             ------------------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHH-HHhccccc
Confidence            44589999999999999999987     68899999999999997 33334333

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.68  E-value=0.0026  Score=48.06  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc-----CCcCHHHHHHHhHhhhhhhhccccc
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL-----KDKTVRDVALRCRWMTKKENGKRRK  118 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L-----P~KTvrDVAlR~rwm~~ke~~kRRK  118 (200)
                      ..||.||-..|-++..+|+     .||+.|+..+     +++|+.||--|+--+.++-...|.+
T Consensus        31 ~~WTkEETd~Lf~L~~~fd-----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~   89 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV   89 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHHhC-----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999998     6999999999     6899999999988887766555655

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.50  E-value=0.01  Score=46.66  Aligned_cols=51  Identities=14%  Similarity=0.249  Sum_probs=42.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhhh
Q 029055           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~k  111 (200)
                      -....||.||..+|-++..+|..    -+|.+||..+    +++|-.||--|.|=|.++
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34568999999999999999975    3899999985    899988887776666543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.47  E-value=0.0049  Score=47.26  Aligned_cols=52  Identities=13%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhhh
Q 029055           56 SGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        56 ~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~k  111 (200)
                      .-....||.||..+|-++..+|...    +|.+|+..+    +++|-.||--|.|=|.++
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~g----~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGTG----RWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCSS----SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC----ChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            3445689999999999999999763    899999976    899988777776666554

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=96.25  E-value=0.0043  Score=54.14  Aligned_cols=52  Identities=21%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhH-HHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNR-YAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~R-y~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|-+...+|+..-.-.+ |.+||.+||++|.++|=-|.+..-++
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            47999999999999999987521223 99999999999999998888875544

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.91  E-value=0.0013  Score=47.77  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           52 LRHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        52 lK~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      +++...+..-||.||.+++-....+-.  +.-..|..||..| |||..+|-.|++-|-+
T Consensus         7 ~~~~ge~vvlWTReeDR~IL~~cq~~G--~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A            7 IKKKGEIIILWTRNDDRVILLECQKRG--PSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            566777888999999998755544322  3338999999999 9999999999998754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=95.85  E-value=0.0087  Score=46.99  Aligned_cols=49  Identities=12%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHc----CCcCHHHHHHHhHhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQL----KDKTVRDVALRCRWMTK  110 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~L----P~KTvrDVAlR~rwm~~  110 (200)
                      ....||.||..+|-++..+|..    -+|.+||..+    +++|-.||--|.|=|.+
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHGG----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            3457999999999999999974    4899999995    99998888777766655

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.42  E-value=0.19  Score=35.48  Aligned_cols=53  Identities=15%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchh-hHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAV-NRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v-~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ....||+|....|.+++..+..|..+ .+..+ .+.+++.|...|+.+.|.+.-+
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHH
Confidence            34689999999999999999866321 22222 2457899999999999987643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.17  E-value=0.072  Score=47.46  Aligned_cols=39  Identities=31%  Similarity=0.449  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHH
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVA  102 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVA  102 (200)
                      .+||..|-..|..++.+|..+    .|.+||+.+++||+.+|.
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~----~~~~IA~ev~~Kt~eEV~  149 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVI  149 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHH----HHHHHHHHhcCCCHHHHH
Confidence            479999999999999999985    488999999999999995

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=90.94  E-value=0.44  Score=32.54  Aligned_cols=49  Identities=12%  Similarity=0.264  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCC----chhhHHHHHHH-HcCCcCHHHHHHHhHhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASD----SAVNRYAKIAK-QLKDKTVRDVALRCRWMT  109 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e----~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~  109 (200)
                      .+.+|.||..+|-+-+..|...    ..-.=|..||. .+|+.|-.-  .|.||++
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqS--wRdRy~k   55 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQS--LKDRYLK   55 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHH--HHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHH--HHHHHHH
Confidence            3679999999999999999654    24478999999 899999874  6777765

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=90.67  E-value=0.44  Score=35.98  Aligned_cols=47  Identities=26%  Similarity=0.432  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC-----CcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK-----DKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP-----~KTvrDVAlR~rwm~~k  111 (200)
                      .+||.||-.-|=++..+|+     .||+-|++...     ++||.|+--|.--+.+|
T Consensus        31 ~~WT~eETd~LfdLc~~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~   82 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            4799999999999999998     79999999984     78999999886655544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.15  E-value=0.32  Score=39.29  Aligned_cols=43  Identities=21%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH--HcCCcCHHHHHH
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAK--QLKDKTVRDVAL  103 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa--~LP~KTvrDVAl  103 (200)
                      ...||..|...|..++.+|..-  -.||..|+.  .|++||..||--
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~--~~r~~~I~~da~L~~Ks~~~v~~   51 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGP--LERLDAIARDAELVDKSETDLRR   51 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSG--GGCHHHHHHHTTCTTSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCc--hhHHHHHHHHhccCCCCHHHHHH
Confidence            3679999999999999999742  368999985  499999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-08
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	1e-07
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	7e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	6e-06
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-05
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	6e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-05
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-04
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-04
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.001
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	0.001
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	0.004

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRKEDH 121
           W+ +E    E  LA Y  D+  +R+A +A+ ++ +T  +V  +  +    E+ K  +   
Sbjct: 4   WSAKENKAFERALAVYDKDT-PDRWANVARAVEGRTPEEV--KKHYEILVEDIKYIESGK 60

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108
           + EWT E+ S L   + K+   +   R+ KIA +L  ++V DV  + + +
Sbjct: 1   APEWTEEDLSQLTRSMVKFPGGT-PGRWEKIAHELG-RSVTDVTTKAKQL 48

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 7e-07
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 58  ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRR 117
            +  WT EEQ +    + KY  D     +  I+  + +K+V  V        ++ N    
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58

Query: 118 KEDH 121
            ++ 
Sbjct: 59  LQEW 62

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGK 115
           W+ +E+    +   ++  +     +  IA  L+ KTV +  L      K EN K
Sbjct: 20  WSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM 108
           WT  +Q +LE  L +Y   S  + + KIA+ +  K+  D   R + +
Sbjct: 15  WTQNQQKLLELALQQYPRGS-SDCWDKIARCVPSKSKEDCIARYKLL 60

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (87), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKENGKRRK 118
           EW+  E  + E+ L KY  D     +  I +  L  K++  +     +M K  +   ++
Sbjct: 3   EWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSII-EYYYMWKTTDRYVQQ 55

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 8e-05
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 59  STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKKENGKRRK 118
           S +WT EE+ + E  LAK+       R+ KI+K +  +TV  V  +       +N  +  
Sbjct: 2   SVKWTIEEKELFEQGLAKF-----GRRWTKISKLIGSRTVLQV--KSYARQYFKNKVKCG 54

Query: 119 EDHNSARK 126
            D  +  +
Sbjct: 55  LDKETPNQ 62

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           T WT EE  I+     +       NR+A+IAK L  +T  D A++  W +
Sbjct: 2   TSWTEEEDRIIYQAHKRL-----GNRWAEIAKLLPGRT--DNAIKNHWNS 44

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 6e-04
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           WT EE   L  L+ KY       R++ IAK LK +  +    R RW  
Sbjct: 6   WTKEEDQRLIKLVQKY----GPKRWSVIAKHLKGRIGKQC--RERWHN 47

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (76), Expect = 0.001
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 60  TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           T WT EE   L+ L+ +       + +  IA  L ++T  DV  + RW  
Sbjct: 2   TRWTREEDEKLKKLVEQN----GTDDWKVIANYLPNRT--DVQCQHRWQK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 61  EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALR 104
            WT +E+  L + +           +  +A Q+  KT  +    
Sbjct: 3   SWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKH 42

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 0.004
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 62  WTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT 109
           W  EE   L   + KY        ++KI    K      V L+ RW T
Sbjct: 5   WLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRT 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.45
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.2
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.07
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.55
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.46
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.46
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.32
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.27
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.06
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.02
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.97
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.94
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.74
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.58
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.45
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.85
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.57
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.05
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.5

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.5e-14  Score=97.26  Aligned_cols=51  Identities=29%  Similarity=0.576  Sum_probs=47.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      +.+||.|||+.||.+|.+||.+++ +||.+||..| +||+.||..|++-|...
T Consensus         1 a~eWT~ee~~~le~Al~~~P~gt~-~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGGTP-GRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            468999999999999999999988 9999999999 89999999999988753

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-11  Score=83.15  Aligned_cols=49  Identities=29%  Similarity=0.503  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ...||.||+.+|.+++.+|+.+.+ .||.+||..||+||..||..|+++|
T Consensus        12 ~~~WT~eEd~~L~~~v~~~~~~~~-~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          12 EEPWTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             SCCCCHHHHHHHHHHHHHSCSSSH-HHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCCccc-hHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            357999999999999999999876 7999999999999999999999986

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.07  E-value=1.4e-10  Score=79.18  Aligned_cols=50  Identities=24%  Similarity=0.523  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      ..||.||+++|++++.+|+.+.+ .||.+||..||+||..||..|++.|..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~-~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTP-DRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCc-hHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            46999999999999999998876 799999999999999999999888754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.6e-08  Score=65.33  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhh
Q 029055           58 ISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMT  109 (200)
Q Consensus        58 ~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~  109 (200)
                      ....||+||..+|.++|.+|..     +|.+||..||+||+.||-.|+..+.
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~-----~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGR-----DFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-----CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-----hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3467999999999999999995     4999999999999999999987554

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.5e-07  Score=63.52  Aligned_cols=47  Identities=38%  Similarity=0.550  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      ++.||.||..+|.+++.+|..     .|.+||..||+||..+|-.|+.-+-+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~ry~~~~~   48 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFK   48 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-----hHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            578999999999999999984     59999999999999999999875543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.7e-07  Score=62.90  Aligned_cols=53  Identities=21%  Similarity=0.379  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHH-HcCCcCHHHHHHHhHhhhhhhhcccc
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAK-QLKDKTVRDVALRCRWMTKKENGKRR  117 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa-~LP~KTvrDVAlR~rwm~~ke~~kRR  117 (200)
                      ..||.||..+|+++|..|..+     |.+|+. +||+||+.||..-.=...+.++-+|+
T Consensus         2 d~WT~eE~~~F~~~~~~yGKd-----f~~I~~~~v~~Ks~~~~v~fYY~~Kkt~~y~~~   55 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQ   55 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred             CCCCHHHHHHHHHHHHHHccc-----HHHHHHHHcCCCCHHHHHHHHHHHhCCchHhhc
Confidence            369999999999999999986     778996 68999999999876544444443333

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.9e-07  Score=58.87  Aligned_cols=43  Identities=19%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      .+||.||..+|.+++.+|..    ..|.+||..||+||.++|-.|..
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~----~nW~~Ia~~~~~Rt~~Qcr~r~~   44 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYM   44 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCC----ccHHHHHHHcCCCCHHHHHHHHH
Confidence            36999999999999999963    36999999999999999988764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.8e-07  Score=64.09  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           57 GISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        57 ~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      .....||.||..+|.+++..|..+     |.+||..||+||+.||..|..
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~-----w~~Ia~~~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSC-----SSSHHHHTTTSCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCc-----HHHHHHHcCCCCHHHHHHHHH
Confidence            344579999999999999999854     899999999999999999864

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3e-06  Score=55.61  Aligned_cols=43  Identities=35%  Similarity=0.544  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      -.||.||..+|.++..+|..    .+|..||..||+||..+|-.|.+
T Consensus         4 g~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qc~~Rw~   46 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWH   46 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHCCCCHHHHHHHHH
Confidence            46999999999999999974    35999999999999999988865

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=5.1e-06  Score=53.78  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhH
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCR  106 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~r  106 (200)
                      ..||.||..+|.++..+|...    .|.+||..||+||..+|-.|.+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~----~W~~Ia~~~~~Rt~~qcr~Rw~   44 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD----DWKVIANYLPNRTDVQCQHRWQ   44 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS----CHHHHHHTSTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHCCCCHHHHHHHHH
Confidence            469999999999999999753    4999999999999999988754

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=4.8e-06  Score=53.70  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWM  108 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm  108 (200)
                      ..||.||..+|-++..+|..     +|.+||..||++|..+|-.|..-+
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh-----HHHHHHhHcCCCCHHHHHHHHHHH
Confidence            47999999999999999984     799999999999999988876543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=2.4e-05  Score=57.89  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=46.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhh
Q 029055           53 RHNSGISTEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        53 K~~~~~~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~  110 (200)
                      +....+...||.||.++|-+...++..-  ..-|.+||..|++||.-+|-.|++-|-+
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~--~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQ--PHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSC--TTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCc--HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3344567889999999999999988842  2569999999999999999999998864

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=1.1e-05  Score=58.03  Aligned_cols=52  Identities=21%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCC-chhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASD-SAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e-~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ..||.||..+|.+...+|+.. .....|.+||..||++|.++|--|.+-.-..
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p   54 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   54 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            469999999999999999864 3446899999999999999998887744333

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.3e-05  Score=48.94  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcC--CcCHHHHHHHhHhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLK--DKTVRDVALRCRWMT  109 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP--~KTvrDVAlR~rwm~  109 (200)
                      ..||.||...|-+++.+|...    .|.+||..+|  ++|-.||.-|.+=|.
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~----~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEG----NWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT----CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            469999999999999999653    7999999866  899888877766553

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00011  Score=48.25  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH--cCCcCHHHHHHHhHhhhh
Q 029055           60 TEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ--LKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        60 ~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~--LP~KTvrDVAlR~rwm~~  110 (200)
                      ..||.||...|.++..+|..    ..|.+||..  |+++|..||--|.+=|.+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~----~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----ChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            47999999999999999953    369999998  569999998888876654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.85  E-value=0.00086  Score=47.01  Aligned_cols=46  Identities=11%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHH----cCCcCHHHHHHHhHhhhh
Q 029055           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQ----LKDKTVRDVALRCRWMTK  110 (200)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~----LP~KTvrDVAlR~rwm~~  110 (200)
                      .||.||..+|.++..+|...    +|.+||..    |+++|..||--|.+=|-+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~----~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc----cHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            59999999999999999753    69999875    899999999888877653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.57  E-value=0.002  Score=43.99  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHhHhhhhh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRCRWMTKK  111 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~rwm~~k  111 (200)
                      ...||+||...|.++|..|..+...-+=+.-.+.+|+.|..+|+.+.|.+.-+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999998764211222223458999999999999988543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0074  Score=42.25  Aligned_cols=46  Identities=13%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHHHh
Q 029055           59 STEWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVALRC  105 (200)
Q Consensus        59 ~~~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAlR~  105 (200)
                      ..+|+.+|...|+.+|..+|+..+ -=|.++|+.+..+|..+|-..+
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~-gfW~~VA~~VGtRSaeECQ~ky   53 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKP-GFWSEVAAAVGSRSPEECQRKY   53 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSS-SHHHHHHHHTTTSCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCC-ccHHHHHHHHccCCHHHHHHHH
Confidence            357999999999999999999987 6799999999999999986543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.50  E-value=0.048  Score=35.64  Aligned_cols=39  Identities=28%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHHhhcCCchhhHHHHHHHHcCCcCHHHHHH
Q 029055           61 EWTPEEQSILEDLLAKYASDSAVNRYAKIAKQLKDKTVRDVAL  103 (200)
Q Consensus        61 ~WT~eEq~~LE~~L~ky~~e~~v~Ry~KIAa~LP~KTvrDVAl  103 (200)
                      .|+.-|-..|-.++.+|..+    -|.+||..+.+||..||..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~----d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh----hHHHHHHHhcCCCHHHHHH
Confidence            49999999999999999986    3589999999999999864