Citrus Sinensis ID: 029058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccEEEEcccccEEcccccccEEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEcEEEEccccEEEEEEEcccccEEccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccccccccccEEccccccEEccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHccccccEEEEccccEEEEcccccEEEEEccccEEEEcccccccEEEEEEEccccccHHHcccHHHHHHHHHHHHHcccccccEEEEccEEEEEEccccccHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
MAVSSLSLNWVSTTLSKklnvaypneltrsatafscqnfftcpedissdeeNKSKRRLLLMGAGLltanllpanslfaqeipknydafvdridgysyvypsdwtefeftghdsgfkDRYLQLQNVRVrfiptdkkdvhdlgpmEEVVSNLARHvyaapnqvadILDMQEVCIFYPGFGYDMAASLLLqlptgkvklrki
Flexible Loop (DISEMBL)
mavsslslnwVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIptdkkdvhdlGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLllqlptgkvklrki
Low Complexity Region (SEG)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Disordered region (IsUnstruct)
*******LNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPE************RLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPT********
Disordered Region (DISOPRED)
****S***NW*************************************************LMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Disordered Region (DISEMBL)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Disordered Region (DISPRO)
*AVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPE******ENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGFGYDMAASLLLQLPTGKVKLRKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
O80634	238	PsbP-like protein 2, chlo	yes	no	0.849	0.710	0.546	1e-45
P82538	230	PsbP-like protein 1, chlo	no	no	0.597	0.517	0.330	2e-12
P11594	260	Oxygen-evolving enhancer	N/A	no	0.547	0.419	0.286	6e-06
O49080	264	Oxygen-evolving enhancer	N/A	no	0.547	0.412	0.304	6e-06
Q42029	263	Oxygen-evolving enhancer	no	no	0.547	0.414	0.303	6e-06
P93566	260	Oxygen-evolving enhancer	N/A	no	0.537	0.411	0.294	9e-06
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.688	0.515	0.269	2e-05
P18212	265	Oxygen-evolving enhancer	N/A	no	0.587	0.441	0.285	4e-05
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.477	0.361	0.327	4e-05
Q96334	217	Oxygen-evolving enhancer	N/A	no	0.512	0.470	0.298	4e-05

>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 112/172 (65%), Gaps = 3/172 (1%)

Query: 1   MAVSSLSL--NWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
           MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR
Sbjct: 1   MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query: 58  LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
             L+G G L A  +PA  L A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKD
Sbjct: 61  QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query: 118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQE 169
           RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E
Sbjct: 121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 172

Required for accumulation of the chloroplast NAD(P)H dehydrogenase (NDH) complex. May be a subunit of this complex.
Arabidopsis thaliana (taxid: 3702)

>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)

Query: 51  ENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEF 108
           ++K +RRL++  G      +LL    L FA E  K + A  D  D Y+++YP  W E   
Sbjct: 45  QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVI 104

Query: 109 TGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ 168
            G D  +KD    L++V V  +PT K+ + + GP +++   L + V A PNQ   ++D  
Sbjct: 105 EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDAS 164

Query: 169 E 169
           E
Sbjct: 165 E 165

Required for efficient repair of photodamaged PSII, but not tightly associated with the complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 42  CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI------PKNYDAFVDR 91
           C    + +E+N +  RRL   LL+GA  + + + PA++ + +         KN D     
Sbjct: 37  CKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYS 96

Query: 92  IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
            DG+    P+ W    E E+ G    ++D +    N+ V   PTDKK + D G  EE +S
Sbjct: 97  GDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 156

Query: 149 NL 150
            +
Sbjct: 157 QV 158

May be involved in the regulation of photosystem II.

Sinapis alba (taxid: 3728)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 42  CPEDISSD-EENKS---KRRL---LLMGAGLLTANLLPANSLFAQ------EIPKNYDAF 88
           C    SSD +EN S    RRL   +L+G+  +   + PAN+ + +      +   N D  
Sbjct: 38  CRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFL 97

Query: 89  VDRIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE 145
               DG++ + P+ W    E EF G    ++D +    NV V   PT KK + D G  EE
Sbjct: 98  PYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157

Query: 146 VVSNL 150
            +S +
Sbjct: 158 FLSTV 162

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 42  CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
           C    S +++N +  RRL   LL+GA  + + + PA++ + +       PK N D     
Sbjct: 40  CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99

Query: 92  IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
            DG+    P+ W    E E+ G    F+D +    N+ V   PTDKK + D G  EE +S
Sbjct: 100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159

Query: 149 NL 150
            +
Sbjct: 160 QV 161

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)

Query: 44  EDISSDEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDG 94
           +D +++  N   RRL   LL+G   + + + PA++ + +       PK N D      DG
Sbjct: 40  QDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDG 99

Query: 95  YSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
           +    P+ W    E EF G    ++D +    N+ V   PTDKK + D G  EE +S +
Sbjct: 100 FKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKV 158

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 15/152 (9%)

Query: 36  CQNFFTCPEDISSDEENKSKRR--LLLMGAGLLTANLLPANSLFAQEI-----PKNYDAF 88
            QN  + P+  + +  + S+R    LL+GA  + + + PA++ + +       PK    F
Sbjct: 39  AQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDF 98

Query: 89  VD-RIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPME 144
                DG+    PS W    E E+ G    F+D +    NV V   PTDKK + D G  E
Sbjct: 99  QTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPE 158

Query: 145 EVVSN----LARHVYAAPNQVADILDMQEVCI 172
           + +S     L R  Y+         +   V I
Sbjct: 159 QFLSQVDYLLGRQAYSGKTDSEGGFESDAVAI 190

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 16/133 (12%)

Query: 56  RRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVD-RIDGYSYVYPSDWT-- 104
           RRL   +L+GA  + + + PA++ + +       PK    F     DG+    PS W   
Sbjct: 57  RRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPN 116

Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LARHVYAAPN 159
            E E+ G    F+D +    NV V   PTDKK + D G  E+ +S     L R  Y+   
Sbjct: 117 KEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT 176

Query: 160 QVADILDMQEVCI 172
                 +   V I
Sbjct: 177 DSEGGFESDAVAI 189

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 56  RRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVYPSDWT-- 104
           RRL   +L+GA  L + + PA++ + +       PK N D      DG+    PS W   
Sbjct: 55  RRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPS 114

Query: 105 -EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
            E EF G    ++D +    N+ V   PTDKK + D G  EE +S +
Sbjct: 115 KEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKV 161

May be involved in the regulation of photosystem II.

Cucumis sativus (taxid: 3659)

>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 49  DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDRIDGYSYVY 99
           D+ +   RRL   LL+GA  + + + PA++ + +       PK N D      DG+    
Sbjct: 2   DDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQV 61

Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL 150
           P+ W    E E+ G    ++D +    N+ V   PTDKK + D G  EE +S +
Sbjct: 62  PAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQV 115

May be involved in the regulation of photosystem II.

Brassica juncea (taxid: 3707)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
224109586	235	predicted protein [Populus trichocarpa]	0.919	0.778	0.586	3e-56
217072084	234	unknown [Medicago truncatula]	0.859	0.730	0.616	8e-55
388494952	234	unknown [Medicago truncatula]	0.859	0.730	0.604	3e-54
225449629	235	PREDICTED: psbP-like protein 2, chloropl	0.864	0.731	0.645	6e-54
388504902	234	unknown [Lotus japonicus]	0.859	0.730	0.598	1e-53
358248758	234	uncharacterized protein LOC100813624 [Gl	0.859	0.730	0.598	2e-50
356536494	234	PREDICTED: psbP-like protein 2, chloropl	0.859	0.730	0.610	1e-49
255637163	205	unknown [Glycine max]	0.859	0.834	0.604	4e-49
449524958	202	PREDICTED: psbP-like protein 2, chloropl	0.919	0.905	0.529	4e-44
356576841	231	PREDICTED: psbP-like protein 2, chloropl	0.839	0.722	0.541	5e-44

>gi|224109586|ref|XP_002315245.1| predicted protein [Populus trichocarpa] gi|222864285|gb|EEF01416.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 135/186 (72%), Gaps = 3/186 (1%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MA+SSLSL+W STTLS+KL+V   NE+     AFS  N  TC  + + +EE+  KRRLLL
Sbjct: 1   MAISSLSLSWASTTLSQKLSVPGSNEILPRVAAFSGNNSVTCTAEATFNEESNCKRRLLL 60

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LT +L+PAN LFA+EIPKNY +FVD  DGYSY YPSDW +F+F GHDS FKDR  
Sbjct: 61  LGVGALTTSLVPANFLFAEEIPKNYTSFVDFEDGYSYYYPSDWIDFDFRGHDSAFKDRTK 120

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI---FYPGF 177
           QLQNVRVRFIPT+KKD+H+LGPMEE +  L +H YAAPNQ+  I  MQE  +    Y  F
Sbjct: 121 QLQNVRVRFIPTEKKDIHELGPMEEAIYFLVKHRYAAPNQMPTIYSMQEKTVEGKNYYTF 180

Query: 178 GYDMAA 183
            Y++ +
Sbjct: 181 EYELTS 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072084|gb|ACJ84402.1| unknown [Medicago truncatula]

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL W S+ LS KLN+ + N L R+ T  S  N  +C  + +S  E   +RR LL
Sbjct: 1   MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNV-SCAMETTSSTERHCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANLLPANSL A+EIP  Y +FVD  DGYSY+YPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRFIPT+KKDV DLGPMEEV+++L +H Y APNQ   I DMQE  I
Sbjct: 120 QLQNVRVRFIPTEKKDVRDLGPMEEVITDLVKHRYTAPNQRPTIYDMQERTI 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494952|gb|AFK35542.1| unknown [Medicago truncatula]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL W S+ LS KLN+ + N L R+ T  S  N  +C  + +S  E   +RR LL
Sbjct: 1   MVVSSCSLTWTSSYLSHKLNLPHSNHLLRNTTTSSSNNV-SCAMETTSSTERHCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANLLPANSL A+EIP  Y +FVD  DGYSY+YPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLLPANSLLAEEIPDRYRSFVDYEDGYSYIYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRFIPT+KKD+ DLGPMEEV+++L +H Y APN+   I DMQE  I
Sbjct: 120 QLQNVRVRFIPTEKKDIRDLGPMEEVITDLVKHRYTAPNRRPTIYDMQERTI 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449629|ref|XP_002279556.1| PREDICTED: psbP-like protein 2, chloroplastic [Vitis vinifera] gi|296086288|emb|CBI31729.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 132/172 (76%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MA+SSLSL WVSTT+S KL++ +  ++ R A   SC +   C  + + DEE+  +RR LL
Sbjct: 1   MALSSLSLGWVSTTISNKLDLPHSIDVPRFAAFTSCNSISACSRETAFDEESHLERRSLL 60

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G GLL ANL PA+SL A+EIP NY AFVD  DGYSY YP DW EFEF GHDS FKDRYL
Sbjct: 61  LGVGLLAANLFPASSLHAEEIPANYKAFVDLSDGYSYYYPLDWREFEFRGHDSAFKDRYL 120

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRV FIPTDK+D+HDLGPMEEVV NL ++VYAAPNQ+A ILDMQE  +
Sbjct: 121 QLQNVRVSFIPTDKRDIHDLGPMEEVVPNLVKNVYAAPNQIATILDMQEKVV 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504902|gb|AFK40517.1| unknown [Lotus japonicus]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 126/172 (73%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MAVSS SL+W S  +S KLN+ + N L R  T+ S  N  +C  + +S EE+ S+RRLLL
Sbjct: 1   MAVSSCSLSWTSPCVSHKLNLPHSNHLPR-ITSTSHSNNVSCATETTSSEESHSQRRLLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G +TANL P   LFA+EIP  Y AFVD  DGYSYVYPSDW EF+F  HDS FKDRYL
Sbjct: 60  LGIGAITANLQPTRLLFAEEIPDRYRAFVDYSDGYSYVYPSDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRF+PT+KKD+ D+GP+EEVV NL +H Y+ P Q++ I DMQE  I
Sbjct: 120 QLQNVRVRFLPTEKKDIRDMGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNI 171

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248758|ref|NP_001239935.1| uncharacterized protein LOC100813624 [Glycine max] gi|255647240|gb|ACU24088.1| unknown [Glycine max]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 119/172 (69%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           M VSS SL+W+S  LS KLN+ + N L R+    S    F C  D +   E+  +RR LL
Sbjct: 1   MVVSSCSLSWISPCLSHKLNLPHTNCLPRNIATSSSNTVF-CELDTTPSGESHCRRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANL P N +FAQE P  Y AFVD  DGYSYVYP DW EF+F  HDS FKDRYL
Sbjct: 60  LGIGALTANLQPTNLVFAQEKPDRYRAFVDYEDGYSYVYPIDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRFIPT+KKD+ DLGPMEEV+ +L +H YAAPNQ   I DMQE  I
Sbjct: 120 QLQNVRVRFIPTEKKDIRDLGPMEEVIYDLVKHRYAAPNQRPTINDMQEKTI 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536494|ref|XP_003536772.1| PREDICTED: psbP-like protein 2, chloroplastic-like [Glycine max]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 121/172 (70%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MAVSS SL+W+S  LS KLN+ + N L R+ TA S  N   C  + +   E   +RR LL
Sbjct: 1   MAVSSCSLSWISPCLSHKLNLPHTNCLPRN-TATSSSNTVFCALETNPRGEIFCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G LTANL P N +FAQE P  Y AFVD  DGYSYVYP DW EF+F  HDS FKDRYL
Sbjct: 60  LGVGALTANLQPINLVFAQEKPDRYRAFVDYEDGYSYVYPIDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRFIPT+KKD+ +LGPMEEVV +L +H YAAPNQ   I DMQE  I
Sbjct: 120 QLQNVRVRFIPTEKKDIRELGPMEEVVYDLVKHRYAAPNQRPTINDMQEKTI 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637163|gb|ACU18912.1| unknown [Glycine max]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 120/172 (69%), Gaps = 1/172 (0%)

Query: 1   MAVSSLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLL 60
           MAVSS SL+W+S  LS KLN+ + N L R+ TA S  N   C  + +   E   +RR LL
Sbjct: 1   MAVSSCSLSWISPCLSHKLNLPHTNCLPRN-TATSSSNTVFCALETNPRGEIFCQRRPLL 59

Query: 61  MGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYL 120
           +G G L ANL P N +FAQE P  Y AFVD  DGYSYVYP DW EF+F  HDS FKDRYL
Sbjct: 60  LGVGALAANLQPINLVFAQEKPDRYRAFVDYEDGYSYVYPIDWKEFDFRAHDSAFKDRYL 119

Query: 121 QLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           QLQNVRVRFIPT+KKD+ +LGPMEEVV +L +H YAAPNQ   I DMQE  I
Sbjct: 120 QLQNVRVRFIPTEKKDIRELGPMEEVVYDLVKHRYAAPNQRPTINDMQEKTI 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524958|ref|XP_004169488.1| PREDICTED: psbP-like protein 2, chloroplastic-like, partial [Cucumis sativus]

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 126/187 (67%), Gaps = 4/187 (2%)

Query: 1   MAVSSLSLNWVSTTLSK-KLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLL 59
           MAVS+  L+WV  T S  KL +   NE + + ++FS  +   C  +  S +E    RR L
Sbjct: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60

Query: 60  LMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRY 119
           L+G G L  +LL A+ LFA+EIPKNY AFVD  DGYSY YPSDW EF+F  HDS FKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 120 LQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI---FYPG 176
           LQLQNVRV+FIPT+KKD+H+ GP++EVV+ L +H YAAPNQ   I DM+E  I    Y  
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKIYYT 180

Query: 177 FGYDMAA 183
           F Y +++
Sbjct: 181 FEYKLSS 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576841|ref|XP_003556538.1| PREDICTED: psbP-like protein 2, chloroplastic-like [Glycine max]

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 113/168 (67%), Gaps = 1/168 (0%)

Query: 5   SLSLNWVSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDISSDEENKSKRRLLLMGAG 64
           ++SL+W+S  LS KLN+ + N L R+    S    F C  + +   E+  +RR LL+G G
Sbjct: 2   AISLSWISPCLSHKLNLPHSNCLPRNTATSSTSTVF-CALETTPGGESHCQRRPLLLGIG 60

Query: 65  LLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQN 124
            LTANL P N +FAQE       F+D  DGYSY+YP DW EF+F   DS FKDRYLQLQN
Sbjct: 61  ALTANLQPTNLVFAQEKSDRCRVFLDYEDGYSYIYPIDWKEFDFRALDSAFKDRYLQLQN 120

Query: 125 VRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQEVCI 172
           VRV+ IPT+KKD+ DLGPMEEV+ NL +H+YAAPNQ   I DMQE  I
Sbjct: 121 VRVKSIPTEKKDIRDLGPMEEVIYNLVKHIYAAPNQRPTIKDMQEKTI 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2039727	238	PnsL1 "Photosynthetic NDH subc	0.849	0.710	0.546	4.5e-43
TAIR|locus:2100681	230	PPL1 "PsbP-like protein 1" [Ar	0.618	0.534	0.336	3e-14
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.547	0.414	0.303	2.5e-06
TAIR|locus:2130295	287	PPD1 "PsbP-Domain Protein1" [A	0.552	0.383	0.310	0.00014

TAIR|locus:2039727 PnsL1 "Photosynthetic NDH subcomplex L 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 94/172 (54%), Positives = 112/172 (65%)

Query:     1 MAVSSLSLNW--VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPEDI-SSDEENKSKRR 57
             MAVSSLS+     S T+S K  +  PN   ++    S        E        N  KRR
Sbjct:     1 MAVSSLSIRCGGFSPTISHKTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRR 60

Query:    58 LLLMGAGLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKD 117
               L+G G L A  +PA  L A+EIPK+Y  FVDR DGYSY YPSDW EF+F  HDS FKD
Sbjct:    61 QALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKD 120

Query:   118 RYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQE 169
             RYLQLQNVRVRFIPT+K D+H++GPMEEVV +L +H +AAPNQVA I DM+E
Sbjct:   121 RYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 172

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2100681 PPL1 "PsbP-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/125 (33%), Positives = 65/125 (52%)

Query:    47 SSDEENKSKRRLLL-MGAGLLTANLLPANSL-FAQEIPKNYDAFVDRIDGYSYVYPSDWT 104
             SS  ++K +RRL++  G      +LL    L FA E  K + A  D  D Y+++YP  W 
Sbjct:    41 SSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQ 100

Query:   105 EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADI 164
             E    G D  +KD    L++V V  +PT K+ + + GP +++   L + V A PNQ   +
Sbjct:   101 EVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTL 160

Query:   165 LDMQE 169
             +D  E
Sbjct:   161 IDASE 165

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 37/122 (30%), Positives = 58/122 (47%)

Query:    42 CPEDISSDEENKS-KRRL---LLMGAGLLTANLLPANSLFAQEI-----PK-NYDAFVDR 91
             C    S +++N +  RRL   LL+GA  + + + PA++ + +       PK N D     
Sbjct:    40 CKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYN 99

Query:    92 IDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVS 148
              DG+    P+ W    E E+ G    F+D +    N+ V   PTDKK + D G  EE +S
Sbjct:   100 GDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLS 159

Query:   149 NL 150
              +
Sbjct:   160 QV 161

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2130295 PPD1 "PsbP-Domain Protein1" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00014, P = 0.00014
 Identities = 37/119 (31%), Positives = 57/119 (47%)

Query:    38 NFFTCPEDISSDEENKSKRRLLLMGAGLLTANL-LPANSLFAQEIPKNYDAFVDRIDGYS 96
             N  T  + + +    KS    LLM +GL+ +   LP  + FA   P  +  ++D  DGYS
Sbjct:    66 NCLTDAKQVCAVGRRKSMMMGLLM-SGLIVSQANLP--TAFAST-PV-FREYIDTFDGYS 120

Query:    97 YVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFI-PTDKK--DVHDLGPMEEVVSNLAR 152
             + YP +W +    G D  F+D  +  +N+ V F  P+      + DLG  EEV   + R
Sbjct:   121 FKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLR 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       199   0.00085  111 3  11 22  0.46    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.39u 0.09s 18.48t   Elapsed:  00:00:01
  Total cpu time:  18.39u 0.09s 18.48t   Elapsed:  00:00:01
  Start:  Fri May 10 04:20:32 2013   End:  Fri May 10 04:20:33 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048564 "photosystem I assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80634	PPL2_ARATH	No assigned EC number	0.5465	0.8492	0.7100	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.355.1	hypothetical protein (158 aa)			•	•			•		0.692
	estExt_Genewise1_v1.C_LG_X6026	hypothetical protein (200 aa)			•	•					0.620
	eugene3.00160848	hypothetical protein (215 aa)			•	•					0.615
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.597
	fgenesh4_pm.C_LG_II001205	RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)			•	•					0.588
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)			•	•					0.586
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•			•		0.570
	gw1.152.106.1	hypothetical protein (199 aa)			•	•			•		0.568
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•			•		0.561
	estExt_Genewise1_v1.C_LG_V0051	hypothetical protein (130 aa)			•				•		0.559

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam01789	163	pfam01789, PsbP, PsbP	4e-11
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	1e-08
PLN00059	286	PLN00059, PLN00059, PsbP domain-containing protein	8e-06

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 58.5 bits (142), Expect = 4e-11
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 77  FAQEIPKNYDAFVDRIDGYSYVYPSDWT-EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKK 135
              +    + A+VD  DGY ++YP+ W  E    G D  F D     +NV V   P DKK
Sbjct: 2   CKAKTNAGFQAYVDTDDGYEFLYPTGWWREVVSDGPDVVFHDLIESDENVSVVISPVDKK 61

Query: 136 -DVHDLGPMEEVVSNLARHVYAAPN--QVADILDMQE 169
             + DLG  EEV   L R V A     + A++L+  E
Sbjct: 62  KSLEDLGSPEEVGERLLRGVLAPEGSGREAELLEASE 98

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 49  DEENKSKRRL---LLMGAGLLTANLLPANSLFAQEI-----PKNYDAFVDRI-DGYSYVY 99
           ++ +   RR    LL GA    A + PAN+ + +       PK    F+    DG+  + 
Sbjct: 45  EDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLV 104

Query: 100 PSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN----LAR 152
           PS W    E EF G    F+D +    N+ V   PTDKK + D G  EE +S     L +
Sbjct: 105 PSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGK 164

Query: 153 HVYA---------APNQV--ADILD 166
             Y+           N V  A +L+
Sbjct: 165 QAYSGETASEGGFDANAVATAAVLE 189

Length = 260

>gnl|CDD|177690 PLN00059, PLN00059, PsbP domain-containing protein 1; Provisional

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 55  KRRLLLMGAGLLTANLL--PANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHD 112
           +R+ ++MG  LL + L+   AN   A      +  ++D  DGYS+ YP +W +    G D
Sbjct: 79  RRKSMMMG--LLMSGLIVSEANLPTAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGAD 136

Query: 113 SGFKDRYLQLQNVRVRF-IPTDKK--DVHDLGPMEEVVSNLARH 153
             F+D  +  +N+ V F  P+  K   + DLG  EEV   + R 
Sbjct: 137 IFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQ 180

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.94
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.92
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.91
PLN03152	241	hypothetical protein; Provisional	99.26
PF12712	153	DUF3805: Domain of unknown function (DUF3805); Int	90.26

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=1.4e-38  Score=278.22  Aligned_cols=164  Identities=27%  Similarity=0.416  Sum_probs=138.3

Q ss_pred             ccccCCccceeeccCCCCcccccchhhHHHHH---HHHHHhhccCCCccccccc-----ccccccceeec-CCCeEEeec
Q 029058           30 SATAFSCQNFFTCPEDISSDEENKSKRRLLLM---GAGLLTANLLPANSLFAQE-----IPKNYDAFVDR-IDGYSYVYP  100 (199)
Q Consensus        30 ~~~~~~~~~~~~c~~~~~~~~~~~~~RR~aL~---g~aal~a~v~pa~aA~ae~-----~~~g~~~y~d~-~dGYsf~yP  100 (199)
                      .....++++ ++|++|.+  +...++||.+|+   |++++++.+.|+++||||+     +|+..+.|+++ +|||+|+||
T Consensus        29 ~~~~~~~~~-~~~~~~~~--~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~dgY~FlyP  105 (260)
T PLN00042         29 AVSASRPSQ-VVCRAQEE--DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVP  105 (260)
T ss_pred             ccCCCCCcc-eeeecccc--ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeCCCeEEecC
Confidence            344555555 69999876  345688998877   4445668899999999998     77777777776 599999999


Q ss_pred             CCce---EeeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHH----HHHHHHHHHhcCCC-----------Ccc
Q 029058          101 SDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE----VVSNLARHVYAAPN-----------QVA  162 (199)
Q Consensus       101 ~~W~---ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPee----vae~L~k~~~~~p~-----------~~a  162 (199)
                      ++|+   |++++|+|++|+|++++++||||+|+|+++++|+|||+|||    |+++|+++++++++           .++
T Consensus       106 ~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata  185 (260)
T PLN00042        106 SKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATA  185 (260)
T ss_pred             CCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccce
Confidence            9996   77789999999999999999999999999999999999999    67788999998772           278


Q ss_pred             eEEeeeeEeecCCcceeehhh------------hhhhhcccCceeee
Q 029058          163 DILDMQEVCIFYPGFGYDMAA------------SLLLQLPTGKVKLR  197 (199)
Q Consensus       163 ~Lida~er~~~y~~~~yd~~~------------~~~~~~~~~~~~~~  197 (199)
                      +||++++|+. .|+.||+++.            |.|+-.++..+||-
T Consensus       186 ~Lleas~re~-dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLY  231 (260)
T PLN00042        186 AVLESSTQEV-GGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLY  231 (260)
T ss_pred             eEEEeeeEEe-CCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEE
Confidence            9999999987 6889999984            89999999988873

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=4.1e-33  Score=244.44  Aligned_cols=139  Identities=25%  Similarity=0.383  Sum_probs=116.0

Q ss_pred             eeccCCCCcccccchhhHHHHH-HH--HHHhhccCCCcccccccccccccceeecCCCeEEeecCCceEeeecCCceeee
Q 029058           40 FTCPEDISSDEENKSKRRLLLM-GA--GLLTANLLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFK  116 (199)
Q Consensus        40 ~~c~~~~~~~~~~~~~RR~aL~-g~--aal~a~v~pa~aA~ae~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~  116 (199)
                      +.|..+..  ..-++.||++|+ +.  +.+.........|+|.  |+||+.|+|+.|||+|+||.||++|.+.|+|++|+
T Consensus        65 ~~~~~~~~--~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~--~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFr  140 (286)
T PLN00059         65 INCLTDAK--QVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS--IPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFR  140 (286)
T ss_pred             eecccchh--hhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC--CcccceeEcCCCCeEEeCCCCCeEeccCCCceEEe
Confidence            45665432  244789999975 22  1122222323356664  56899999999999999999999999999999999


Q ss_pred             CcccCCcceEEEEecCC---CCCcccCCCHHHHHHHHHHHHhcCC-----C--CcceEEeeeeEeecCCcceeehh
Q 029058          117 DRYLQLQNVRVRFIPTD---KKDVHDLGPMEEVVSNLARHVYAAP-----N--QVADILDMQEVCIFYPGFGYDMA  182 (199)
Q Consensus       117 D~~~~~eNVsV~Ispv~---~~sI~dfGsPeevae~L~k~~~~~p-----~--~~a~Lida~er~~~y~~~~yd~~  182 (199)
                      |+++.+|||||+|+|++   +++|+|||+|+|||++|+++++++|     |  ++++||+|++|++..|..|||++
T Consensus       141 D~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lE  216 (286)
T PLN00059        141 DPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVE  216 (286)
T ss_pred             ccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEE
Confidence            99999999999999875   8999999999999999999999985     3  99999999999998999999998

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.94  E-value=2.8e-27  Score=194.48  Aligned_cols=126  Identities=31%  Similarity=0.451  Sum_probs=103.4

Q ss_pred             cCCCcccccccccccccceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEecCCCC-CcccCCCHHHHHH
Q 029058           70 LLPANSLFAQEIPKNYDAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKK-DVHDLGPMEEVVS  148 (199)
Q Consensus        70 v~pa~aA~ae~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~-sI~dfGsPeevae  148 (199)
                      +.++..+.++..+.||+.|.|+++||+|+||++|+++++.|++++|+|+++.++||+|+|+|+... +|+|||+|+||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~   87 (175)
T PF01789_consen    8 LSSANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEEVAE   87 (175)
T ss_dssp             --------STT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHHHHH
T ss_pred             eccchhhhcccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHHHHH
Confidence            344444555567899999999999999999999999999999999999999999999999999855 9999999999999


Q ss_pred             HHHHHHhcCCC--CcceEEeeeeEeecCCcceeehhh----------hhhhhcccCceee
Q 029058          149 NLARHVYAAPN--QVADILDMQEVCIFYPGFGYDMAA----------SLLLQLPTGKVKL  196 (199)
Q Consensus       149 ~L~k~~~~~p~--~~a~Lida~er~~~y~~~~yd~~~----------~~~~~~~~~~~~~  196 (199)
                      +|++..+++++  +.++||++.+|+.. |..||+++-          |.|.-..+.++||
T Consensus        88 ~l~~~~~~~~~~~~~a~li~a~~~~~~-g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~l  146 (175)
T PF01789_consen   88 RLLNGELASPGSGREAELISASEREVD-GKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKL  146 (175)
T ss_dssp             HHHHHCCCHCTSSEEEEEEEEEEEEET-TEEEEEEEEEEEETTEEEEEEEEEEEEETTEE
T ss_pred             HHhhhhcccccCCcceEEEEeeeeecC-CccEEEEEEEeccCCCcccEEEEEEEEECCEE
Confidence            99999999888  99999999999998 777898872          6676666666665

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.92  E-value=3.8e-25  Score=193.67  Aligned_cols=143  Identities=20%  Similarity=0.304  Sum_probs=109.2

Q ss_pred             ccchhhHHHHHHHHHHhhc-cCCCccccccc---------cc--ccccceeec-C----------CCeEEeecCCceEee
Q 029058           51 ENKSKRRLLLMGAGLLTAN-LLPANSLFAQE---------IP--KNYDAFVDR-I----------DGYSYVYPSDWTEFE  107 (199)
Q Consensus        51 ~~~~~RR~aL~g~aal~a~-v~pa~aA~ae~---------~~--~g~~~y~d~-~----------dGYsf~yP~~W~ev~  107 (199)
                      ...+.||+.|.|+++...- .....++.|-+         .|  .||-.|... .          .||+|+||.||+|+.
T Consensus        40 ~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~  119 (263)
T PLN00067         40 AVVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTR  119 (263)
T ss_pred             cchhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCcc
Confidence            3457899999877653222 12222333322         22  256666543 1          489999999999988


Q ss_pred             ec----C-----------CceeeeCcccCCcceEEEEecC------CCCCcccCCCHHHHHHHHHHHHhcCCCCcceEEe
Q 029058          108 FT----G-----------HDSGFKDRYLQLQNVRVRFIPT------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADILD  166 (199)
Q Consensus       108 ~~----G-----------~dv~F~D~~~~~eNVsV~Ispv------~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Lid  166 (199)
                      ++    |           +|++|+|++  ++||+|+|+|+      ++++|+|||+||||+++|++.+.++++++.+||+
T Consensus       120 Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g~~~~~~eLLe  197 (263)
T PLN00067        120 VANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTGNSYDPDELLE  197 (263)
T ss_pred             ccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhcCCCCCcceEE
Confidence            86    4           899999965  58999999998      4789999999999999999999998889999999


Q ss_pred             eeeEeecCCcceeehhh---------hhhhhcccCceee
Q 029058          167 MQEVCIFYPGFGYDMAA---------SLLLQLPTGKVKL  196 (199)
Q Consensus       167 a~er~~~y~~~~yd~~~---------~~~~~~~~~~~~~  196 (199)
                      +++|+. .|+.||+++.         |.|+--++-.+||
T Consensus       198 As~re~-dGktYY~~E~~tp~a~~gRHnLataTV~~GkL  235 (263)
T PLN00067        198 TSVEKI-GDQTYYKYVLETPFALTGSHNLAKATAKGNTV  235 (263)
T ss_pred             eeeEee-CCeEEEEEEEEecCCCCCceEEEEEEEECCEE
Confidence            999988 6899999883         7777666655555

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.91  E-value=7.4e-24  Score=186.24  Aligned_cols=145  Identities=16%  Similarity=0.297  Sum_probs=113.4

Q ss_pred             ccchhhHHHHHHHHHHh---hccCCCcc--c-c----------cccccccccceeecC-------------CCeEEeecC
Q 029058           51 ENKSKRRLLLMGAGLLT---ANLLPANS--L-F----------AQEIPKNYDAFVDRI-------------DGYSYVYPS  101 (199)
Q Consensus        51 ~~~~~RR~aL~g~aal~---a~v~pa~a--A-~----------ae~~~~g~~~y~d~~-------------dGYsf~yP~  101 (199)
                      ...++||.+|+..++++   +...|+.+  + +          .++...||+.|..++             ..|+|+||.
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~  121 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQ  121 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCC
Confidence            45789999998433331   12234222  1 2          233458899999885             349999999


Q ss_pred             CceEeeec-----CCceeeeCcccCCcceEEEEecC--------CCCCcccCCCHHHHHHHHHHHHhcCCCCcceEEeee
Q 029058          102 DWTEFEFT-----GHDSGFKDRYLQLQNVRVRFIPT--------DKKDVHDLGPMEEVVSNLARHVYAAPNQVADILDMQ  168 (199)
Q Consensus       102 ~W~ev~~~-----G~dv~F~D~~~~~eNVsV~Ispv--------~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Lida~  168 (199)
                      +|+|+.++     |+++.|++..+.++||+|+|+|+        ++++|+|||+||+|++.|++++++++.++++||+++
T Consensus       122 GW~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~~e~eLl~a~  201 (262)
T PLN00066        122 GWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEPVEEGKVLSME  201 (262)
T ss_pred             CCeEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCCccccceeEee
Confidence            99999887     54455555446889999999998        689999999999999999999999988999999999


Q ss_pred             eEeecCCcceeehh--hhhhhhcccCceee
Q 029058          169 EVCIFYPGFGYDMA--ASLLLQLPTGKVKL  196 (199)
Q Consensus       169 er~~~y~~~~yd~~--~~~~~~~~~~~~~~  196 (199)
                      +|+. .|+.||+++  -|.|+-.++.++||
T Consensus       202 ~re~-dGktYY~~E~~rH~LasaTV~~GrL  230 (262)
T PLN00066        202 VAEH-SGRTYYQFELPPHTLVTATAAGNRV  230 (262)
T ss_pred             eeec-CCcEEEEEEEeCceEEEEEEECCEE
Confidence            9866 688899998  68888877777776

>PLN03152 hypothetical protein; Provisional

Probab=99.26  E-value=1.1e-11  Score=107.39  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             cCCCeEEeecCCceEee----ec------C-------CceeeeCcccCCcceEEEEecC--------CCCCcccCCCHHH
Q 029058           91 RIDGYSYVYPSDWTEFE----FT------G-------HDSGFKDRYLQLQNVRVRFIPT--------DKKDVHDLGPMEE  145 (199)
Q Consensus        91 ~~dGYsf~yP~~W~ev~----~~------G-------~dv~F~D~~~~~eNVsV~Ispv--------~~~sI~dfGsPee  145 (199)
                      +++||++.||-+++.+-    +.      |       -.+||..+ |.+|||||+|+|+        +.++|+|||+|+|
T Consensus        82 ~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~E  160 (241)
T PLN03152         82 YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKE  160 (241)
T ss_pred             hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHH
Confidence            48999999999996431    11      1       24567665 8899999999997        5899999999999


Q ss_pred             HHHHHHHHHhcCCC---CcceEEeeeeEeecCCcceeehh-----hhhhhhcccCceee
Q 029058          146 VVSNLARHVYAAPN---QVADILDMQEVCIFYPGFGYDMA-----ASLLLQLPTGKVKL  196 (199)
Q Consensus       146 vae~L~k~~~~~p~---~~a~Lida~er~~~y~~~~yd~~-----~~~~~~~~~~~~~~  196 (199)
                      |++.|+     |++   +.++.++.++  ...+..||+++     -|.|+-.-+-.|||
T Consensus       161 Vgkv~v-----P~g~~~~saR~iel~~--E~dGKtYY~lEy~v~~RH~LaTVaVsrGKL  212 (241)
T PLN03152        161 AAKIFV-----PGGATLYSARTIKVKE--EEGIRTYYFYEFGRDEQHVALVATVNSGKA  212 (241)
T ss_pred             HHHhhC-----CCcccccccceeeeee--ecCCceeEEEEEEeCCcEEEEEEEEcCCeE
Confidence            996664     554   2677777743  66678889988     45555555544444

>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown

Probab=90.26  E-value=0.44  Score=39.37  Aligned_cols=46  Identities=26%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             cceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEec
Q 029058           86 DAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIP  131 (199)
Q Consensus        86 ~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Isp  131 (199)
                      +-|++|+.=|++.||.+|.|.+-..-...|.|+..=+.|..+..-.
T Consensus         2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk   47 (153)
T PF12712_consen    2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYK   47 (153)
T ss_dssp             EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE
T ss_pred             CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEe
Confidence            4688888899999999999998333455688888889998765443

In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		1e-04

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSN 149
           DG+    PS W    E E+ G    F+D +    NV V   PTDKK + D G  E+ +S 
Sbjct: 15  DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 74
Query: 150 ----LARHVYAAPNQVADILDMQEVCI 172
               L R  Y+         +   V I
Sbjct: 75  VDYLLGRQAYSGKTDSEGGFESDAVAI 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	3e-19
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	4e-13
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	9e-13
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 63.7 bits (154), Expect = 4e-13
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 82  PKNYDAFVD-RIDGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDV 137
           PK    F     DG+    PS W    E E+ G    F+D +    NV V   PTDKK +
Sbjct: 3   PKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSI 62

Query: 138 HDLGPMEEVVSNLAR 152
            D G  E+ +S +  
Sbjct: 63  TDFGSPEQFLSQVDY 77

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 62.6 bits (151), Expect = 9e-13
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 82  PKNYDAFVDRIDGYSYVYPSDWTEFEFTGH-DSGFKDRYLQLQNVRVRFIP-TDKKDVHD 139
                A+VD  DGY ++YP  W + +     D  F D     +NV V        K + +
Sbjct: 5   TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEE 64

Query: 140 LGPMEEVVSNLARHVYAAPN--QVADILDMQE 169
           LG  EEV   L R++ A     + + ++    
Sbjct: 65  LGSPEEVGDRLLRNIIAPSESGRSSALIAATS 96

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 82  PKNYDAFVDRIDGYSYVYPSDWTEF----EFTGHDSGFKDRYLQLQNVRVRFIPTD-KKD 136
             +   + D  DGY ++YP+ W          G D  F+D   + +N+ V        K 
Sbjct: 11  IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT 70

Query: 137 VHDLGPMEEVVSNLARHVYAAP--NQVADILDMQE 169
           + DLG   +V     + V  A   ++ A++++ + 
Sbjct: 71  LTDLGTATDVGYRFMKTVNDASQGDRQAELINAEA 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 39/215 (18%), Positives = 61/215 (28%), Gaps = 73/215 (33%)

Query: 9   NW-------VSTTLSKKLNVAYPNELTRSATAFSCQNFFTCPED---------------I 46
           NW       ++T +   LNV  P E  +     S    F  P                 I
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VF--PPSAHIPTILLSLIWFDVI 400

Query: 47  SSDEE---NKSKRRLLLMGA---------GLLTANLLPANSLFAQ--------EIPKNY- 85
            SD     NK  +  L+             +     +   + +A          IPK + 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 86  --DAFVDRIDGYSYVYPSD-WTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGP 142
             D     +D Y Y +        E     + F+  +L       RF+  ++K       
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----RFL--EQK------- 506

Query: 143 MEEVVSNLARHVYAAPNQVADILDMQEVCIFYPGF 177
                    RH   A N    IL+  +   FY  +
Sbjct: 507 --------IRHDSTAWNASGSILNTLQQLKFYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.86
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.91
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.9
3hlz_A	269	Uncharacterized protein BT_1490; NP_810393.1, stru	85.59

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.86  E-value=1.4e-26  Score=188.63  Aligned_cols=116  Identities=22%  Similarity=0.346  Sum_probs=102.0

Q ss_pred             cccccccceeecCCCeEEeecCCceEeeec----CCceeeeCcccCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHH
Q 029058           80 EIPKNYDAFVDRIDGYSYVYPSDWTEFEFT----GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHV  154 (199)
Q Consensus        80 ~~~~g~~~y~d~~dGYsf~yP~~W~ev~~~----G~dv~F~D~~~~~eNVsV~Ispv~~-~sI~dfGsPeevae~L~k~~  154 (199)
                      +.|+||+.|.|+.|||+|+||++|++++++    |+|++|+|+++.++||+|+|+|+++ ++|+|||+||||+++|++++
T Consensus         9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~   88 (170)
T 2lnj_A            9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV   88 (170)
Confidence            367899999999999999999999999988    9999999999999999999999986 99999999999999999999


Q ss_pred             hcCC--CCcceEEeeeeEeecCCcceeehh----------hhhhhhcccCceee
Q 029058          155 YAAP--NQVADILDMQEVCIFYPGFGYDMA----------ASLLLQLPTGKVKL  196 (199)
Q Consensus       155 ~~~p--~~~a~Lida~er~~~y~~~~yd~~----------~~~~~~~~~~~~~~  196 (199)
                      +++|  +++++||++.+|+ ..+..||+++          -|.|..+.+..+||
T Consensus        89 ~~~~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gkl  141 (170)
T 2lnj_A           89 NDASQGDRQAELINAEARD-EDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKL  141 (170)
Confidence            9998  4999999999995 4567778887          35555555555554

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.91  E-value=7.5e-25  Score=176.53  Aligned_cols=101  Identities=25%  Similarity=0.400  Sum_probs=92.5

Q ss_pred             ccccccceeecCCCeEEeecCCceEeeec-CCceeeeCcccCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHHhcCC
Q 029058           81 IPKNYDAFVDRIDGYSYVYPSDWTEFEFT-GHDSGFKDRYLQLQNVRVRFIPTDK-KDVHDLGPMEEVVSNLARHVYAAP  158 (199)
Q Consensus        81 ~~~g~~~y~d~~dGYsf~yP~~W~ev~~~-G~dv~F~D~~~~~eNVsV~Ispv~~-~sI~dfGsPeevae~L~k~~~~~p  158 (199)
                      .|+||+.|.|+.+||+|+||.+|++++++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+||+|+++|+++++++|
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~   83 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS   83 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence            57899999999999999999999999998 9999999999999999999999985 999999999999999999999988


Q ss_pred             --CCcceEEeeeeEeecCCcceeehh
Q 029058          159 --NQVADILDMQEVCIFYPGFGYDMA  182 (199)
Q Consensus       159 --~~~a~Lida~er~~~y~~~~yd~~  182 (199)
                        ++.++||++.+|+. .|+.||+++
T Consensus        84 ~~~~~~~l~~a~~r~~-~G~~yY~~E  108 (165)
T 2xb3_A           84 ESGRSSALIAATSQKA-DDKTYYILE  108 (165)
T ss_dssp             TSSCEEEEEEEEEEEE-TTEEEEEEE
T ss_pred             CCCcceEEEEeeeeec-CCceEEEEE
Confidence              49999999999955 567788876

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.90  E-value=4.7e-25  Score=182.16  Aligned_cols=113  Identities=26%  Similarity=0.447  Sum_probs=89.3

Q ss_pred             ccccccceeecCCCeEEeecCCceE---eeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHH----HHHHHHH
Q 029058           81 IPKNYDAFVDRIDGYSYVYPSDWTE---FEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEV----VSNLARH  153 (199)
Q Consensus        81 ~~~g~~~y~d~~dGYsf~yP~~W~e---v~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeev----ae~L~k~  153 (199)
                      .++||+.|.  .|||+|+||++|++   ++++|+|++|+|+++.++||+|+|+|+++++|+|||+|++|    +++|+++
T Consensus         5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~   82 (177)
T 1v2b_A            5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQ   82 (177)
T ss_dssp             --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---
T ss_pred             CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHH
Confidence            468899998  99999999999984   45679999999999999999999999999999999999994    6688899


Q ss_pred             HhcCC---------C--CcceEEeeeeEeecCCcceeehh------------hhhhhhcccCceee
Q 029058          154 VYAAP---------N--QVADILDMQEVCIFYPGFGYDMA------------ASLLLQLPTGKVKL  196 (199)
Q Consensus       154 ~~~~p---------~--~~a~Lida~er~~~y~~~~yd~~------------~~~~~~~~~~~~~~  196 (199)
                      +++++         +  ++++||++.+|+. .|..||+.+            -|.|+-.++..+||
T Consensus        83 ~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~-~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkL  147 (177)
T 1v2b_A           83 AYSGKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKL  147 (177)
T ss_dssp             ---------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEE
T ss_pred             hhcccccccCCcccCcccceEEEEeEEEEe-CCeEEEEEEEEEecCCCCccccEEEEEEEEECCEE
Confidence            88762         2  7899999999998 778889887            25566666666665

>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.59  E-value=0.91  Score=39.32  Aligned_cols=69  Identities=25%  Similarity=0.328  Sum_probs=46.8

Q ss_pred             cceeecCCCeEEeecCCceEeeecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCCCcceEE
Q 029058           86 DAFVDRIDGYSYVYPSDWTEFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNLARHVYAAPNQVADIL  165 (199)
Q Consensus        86 ~~y~d~~dGYsf~yP~~W~ev~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeevae~L~k~~~~~p~~~a~Li  165 (199)
                      +-|++|+.=|++.||++|.|++-..-.-.|.+|..=+.|..+.--.         | -...+.-.+++.+.. +..++++
T Consensus         5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~e-n~sa~~v   73 (269)
T 3hlz_A            5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELKE-NDSASLV   73 (269)
T ss_dssp             EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHHH-CTTCEEE
T ss_pred             ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHhc-CCCceEE
Confidence            5799999999999999999998654455688888888888755443         2 223445555555543 3444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-11

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 93  DGYSYVYPSDWT---EFEFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEE---- 145
           DG+    PS W    E E+ G    F+D +    NV V   PTDKK + D G  E+    
Sbjct: 9   DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 68

Query: 146 VVSNLARHVYAAPNQVADILDMQEV 170
           V   L R  Y+         +   V
Sbjct: 69  VDYLLGRQAYSGKTDSEGGFESDAV 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.86

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.86  E-value=5.6e-23  Score=165.35  Aligned_cols=110  Identities=26%  Similarity=0.484  Sum_probs=88.2

Q ss_pred             cccceeecCCCeEEeecCCceEe---eecCCceeeeCcccCCcceEEEEecCCCCCcccCCCHHHHHHHH----HHHHhc
Q 029058           84 NYDAFVDRIDGYSYVYPSDWTEF---EFTGHDSGFKDRYLQLQNVRVRFIPTDKKDVHDLGPMEEVVSNL----ARHVYA  156 (199)
Q Consensus        84 g~~~y~d~~dGYsf~yP~~W~ev---~~~G~dv~F~D~~~~~eNVsV~Ispv~~~sI~dfGsPeevae~L----~k~~~~  156 (199)
                      +|+.|.|  |||+|+||++|.++   +..|+|++|+|+++.++||+|+|+|+++++|++||+|+++++.+    +++++.
T Consensus         2 ~~~~y~~--dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~   79 (171)
T d1v2ba_           2 DFQTYNG--DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYS   79 (171)
T ss_dssp             CEEEEEC--SSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC------
T ss_pred             CcccccC--CCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhc
Confidence            4777776  89999999999744   46689999999999999999999999999999999999988865    455554


Q ss_pred             CC-----------CCcceEEeeeeEeecCCcceeehhh------------hhhhhcccCceee
Q 029058          157 AP-----------NQVADILDMQEVCIFYPGFGYDMAA------------SLLLQLPTGKVKL  196 (199)
Q Consensus       157 ~p-----------~~~a~Lida~er~~~y~~~~yd~~~------------~~~~~~~~~~~~~  196 (199)
                      ++           .++++|+++.+|+. .|..||+++-            |.|.-+++.++||
T Consensus        80 ~~~~~~~~~~~~~~~~a~v~~a~~~~~-~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grL  141 (171)
T d1v2ba_          80 GKTDSEGGFESDAVAIANVLETSTAEV-GGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKL  141 (171)
T ss_dssp             ------------CCCEEEEEEEEEEEE-TTEEEEEEEEEEEC-----CCEEEEEEEEEETTEE
T ss_pred             ccccccccccccccceeEEEEeeeeec-CCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEE
Confidence            33           38899999999986 6788898873            7777777777776