Citrus Sinensis ID: 029067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVCIASPLS
Secondary Structure (PSIPRED)
cccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEcccccEEEEEEEEcccccEEEcccccccccccEEEEEEEEEEccccccccccccccccEEEEEEEEEccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEccEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHcccccEcEcccccccEcccccccEEEEEEEEEEccccEEEEEEEEcccccEEEcccccEEccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mavdekksgaegkvwglckmpfwqssngsssssssmqnnnnynssnnnnsssHVYQQnqsqqvmgrssvvnssnvssmaksllptrrrlrldpstklffpyepgkqvrsaisikntskshvafkfqttapkscymrppggilapgesLIATVFKfveppennerptdqksKVKFKIMSLKvkgemdyvpelvciaspls
Flexible Loop (DISEMBL)
mavdekksgaegkvwgLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVssmaksllptrrrlrldpstklffpyepgkqvrSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVeppennerptdqkskvkFKIMSlkvkgemdyvpELVCIASPLS
Low Complexity Region (SEG)
MAVDEKKSGAEGKVWGLCKMPFWqssngsssssssmqnnnnynssnnnnssshvyqqnqsqqVMGRssvvnssnvssMAKSllptrrrlrlDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVCIASPLS
Disordered region (IsUnstruct)
************KVWGLCKMPFW*************************************************************************LFFPYE********ISI*****SHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFV*****************FKIMSLKVKGEMDYVPELVCIA****
Disordered Region (DISOPRED)
****************LCK*********************************************************************LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFV****************KFKIMSLKVKGEMDYVPELVCIASPL*
Disordered Region (DISEMBL)
**********EGKVWGLCKMPFWQ**************NNNYNSSNNN*********************************LLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPP*********KSKVKFKIMSLKVKGEMDYVPELVCIASPLS
Disordered Region (DISPRO)
***********GKVWGLCKMPFWQ*********************************************************LLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVCIAS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVCIASPLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q8VYN2	295	Vesicle-associated protei	no	no	0.894	0.603	0.556	4e-58
Q8LPQ7	287	Vesicle-associated protei	no	no	0.959	0.665	0.569	5e-55
Q1ECE0	266	Vesicle-associated protei	no	no	0.814	0.609	0.638	4e-44
Q84WW5	239	Vesicle-associated protei	no	no	0.417	0.347	0.352	2e-05
B9DHD7	386	Vesicle-associated protei	no	no	0.447	0.230	0.367	2e-05
Q9LVU1	220	Vesicle-associated protei	no	no	0.457	0.413	0.319	2e-05
Q9SHC8	239	Vesicle-associated protei	no	no	0.432	0.359	0.329	0.0001
Q0VCY1	249	Vesicle-associated membra	yes	no	0.432	0.345	0.351	0.0001
Q5R601	249	Vesicle-associated membra	yes	no	0.432	0.345	0.329	0.0002
Q9P0L0	249	Vesicle-associated membra	no	no	0.432	0.345	0.329	0.0002

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  224 bits (570), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/223 (55%), Positives = 147/223 (65%), Gaps = 45/223 (20%)

Query: 1   MAVDEKKSGAEGKV-WGLCKMPFWQSS---NGSSSSSSS--------------------- 35
           M + E+K  ++GK  WG  K+PF  SS   N +SS+++S                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 36  -------MQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRR 88
                    +   YN  + + S      QNQ            S +VSS+AKS LPT+RR
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSG-----QNQHP--------TPSPSVSSVAKSFLPTKRR 107

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L+LDPS KL+FPYEPGKQVRSAI IKNTSKSHVAFKFQTTAPKSC+MRPPG ILAPGE++
Sbjct: 108 LKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETI 167

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
           IATVFKFVEPPENNE+P DQ+S+VKFKIMSLKVKG MDYVPEL
Sbjct: 168 IATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 210

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 146/202 (72%), Gaps = 11/202 (5%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MA+ E KS ++G+ WG  K+PF  S++ + S+SSS     + +S  +++ + +   Q++ 
Sbjct: 1   MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60

Query: 61  QQVMG-----------RSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRS 109
            Q  G             S     ++SS+A+SLLPT+RRL+LDPS KL+FPYEPGKQVRS
Sbjct: 61  FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120

Query: 110 AISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQK 169
           AI IKNTSKSHVAFKFQTT PKSC+MRP G ILAPGE +IATVFKFVEPPENNE+P +QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180

Query: 170 SKVKFKIMSLKVKGEMDYVPEL 191
           S VKFKIMSLK+K   DY+PEL
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPEL 202

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/180 (63%), Positives = 136/180 (75%), Gaps = 18/180 (10%)

Query: 14  VWGLCKMPFWQSSNGSSSSSSSMQN-NNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNS 72
           ++ LC  PFWQ    S++SSSS QN N NY S + N        +N     + +  +   
Sbjct: 17  LFRLC--PFWQRR--STTSSSSTQNPNQNYRSRHGN--------RNTDISAVSKPPL--- 61

Query: 73  SNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKS 132
             +SS+A+SLLP RRRLRLDPS+ L+FPYEPGKQVRSAI +KNTSKSH AFKFQTTAPKS
Sbjct: 62  -TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKS 120

Query: 133 CYMRPPGGILAPGESLIATVFKFVEPPENNER-PTDQKSKVKFKIMSLKVKGEMDYVPEL 191
           CYMRPPGG+LAPGES+ ATVFKFVE PENNE+ P +QKSKVKFKIMSLKVK  ++YVPEL
Sbjct: 121 CYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPEL 180

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 95  TKLFFPYEPGKQVRSAISIKN-TSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVF 153
           T+L FP+E  KQ   ++ + N T+   VAFK +TT P+   +RP  G++ PG+S   TV 
Sbjct: 12  TELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT 71

Query: 154 KFVEPPENNERPTDQKSKVKFKIMSLKV 181
              +     E P D + K KF + ++ V
Sbjct: 72  MQAQ----KEAPLDMQCKDKFLVQTVVV 95

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L + P T L F  +  KQ    + + NT+  +VAFK +TT+PK   +RP  G++AP  + 
Sbjct: 6   LDIQPRT-LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64

Query: 149 IATVF--KFVEPPENNERPTDQKSKVKFKIMSLKVKGE 184
             TV    F EP      P D   K KF I S  V  E
Sbjct: 65  EFTVIMQAFKEP------PPDMVCKDKFLIQSTAVSAE 96

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 96  KLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKF 155
           +L F +E  KQ    + + N ++++VAFK +TT+PK  ++RP  G++ P +S I  V   
Sbjct: 16  ELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQ 75

Query: 156 VEPPENNERPTDQKSKVKFKIMSLKV--KGEMDYVPE 190
            +     E P D + K KF + S  V    ++D +P+
Sbjct: 76  AQ----REYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L +DP   L FP+E  KQ+  ++ + N + ++VAFK +TT PK   +RP  G++ P  S 
Sbjct: 6   LTIDP-VDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
              V    +     E P D + K KF +  +
Sbjct: 65  EVLVTMQAQ----KEAPADLQCKDKFLLQCV 91

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos taurus GN=VAPA PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L LDP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG  L
Sbjct: 15  LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPG--L 72

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
             TV   ++P + +    ++KSK KF + ++
Sbjct: 73  TVTVSVMLQPFDYD---PNEKSKHKFMVQTI 100

May play a role in vesicle trafficking.

Bos taurus (taxid: 9913)

>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L LDP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG ++
Sbjct: 15  LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
             +V   ++P + +    ++KSK KF + ++
Sbjct: 75  TVSV--MLQPFDYD---PNEKSKHKFMVQTI 100

May play a role in vesicle trafficking.

Pongo abelii (taxid: 9601)

>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L LDP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG ++
Sbjct: 15  LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
             +V   ++P + +    ++KSK KF + ++
Sbjct: 75  TVSV--MLQPFDYD---PNEKSKHKFMVQTI 100

May play a role in vesicle trafficking.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
356543790	263	PREDICTED: vesicle-associated protein 4-	0.894	0.676	0.696	8e-67
388521835	270	unknown [Lotus japonicus]	0.894	0.659	0.670	1e-64
225447643	259	PREDICTED: vesicle-associated protein 4-	0.869	0.667	0.723	5e-64
363807736	265	uncharacterized protein LOC100794120 [Gl	0.904	0.679	0.691	1e-63
356517568	271	PREDICTED: vesicle-associated protein 4-	0.934	0.686	0.712	2e-61
217074058	271	unknown [Medicago truncatula]	0.924	0.678	0.706	5e-61
388504416	271	unknown [Medicago truncatula]	0.924	0.678	0.701	2e-60
255646547	265	unknown [Glycine max]	0.904	0.679	0.691	8e-60
449475725	276	PREDICTED: vesicle-associated protein 4-	0.919	0.663	0.638	5e-58
42572975	212	vesicle-associated membrane family prote	0.904	0.849	0.56	8e-58

>gi|356543790|ref|XP_003540343.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 154/191 (80%), Gaps = 13/191 (6%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           M V+ +KSG++GK W  C+MPFWQ+++  SSSS S  +N +  S NN  S          
Sbjct: 1   MEVETEKSGSDGKGWSFCRMPFWQTTHTPSSSSMSYMHNVHQQSQNNAQS---------- 50

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
              + RSS  +S+ VSS+AKSLLPT+RRLRLDPS KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 51  ---VDRSSHHSSTTVSSVAKSLLPTKRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKSH 107

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAPGES+IATVFKFVEPPENNE+  D+KSKVKFKIMSLK
Sbjct: 108 VAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKSIDKKSKVKFKIMSLK 167

Query: 181 VKGEMDYVPEL 191
           V+GEMDYVPEL
Sbjct: 168 VQGEMDYVPEL 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521835|gb|AFK48979.1| unknown [Lotus japonicus]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 152/191 (79%), Gaps = 13/191 (6%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MAV  +K+G++ KV  LC MPFWQ++  SSSS++    ++             V+QQNQ 
Sbjct: 1   MAVVGEKTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHS-------------VHQQNQV 47

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
            Q + RS+   SS VSS+AKSLLP  +RLRLDP  KL+FPYEPGKQVRSA++IKNT KSH
Sbjct: 48  VQSLDRSNHQPSSTVSSLAKSLLPIWKRLRLDPPNKLYFPYEPGKQVRSAVAIKNTCKSH 107

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSC+MRPPGGILAPGES+IATVFKFVEPP+NNE+P D+KS+VKFKIMSLK
Sbjct: 108 VAFKFQTTAPKSCFMRPPGGILAPGESIIATVFKFVEPPDNNEKPVDKKSRVKFKIMSLK 167

Query: 181 VKGEMDYVPEL 191
           VKGEMDYVPEL
Sbjct: 168 VKGEMDYVPEL 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447643|ref|XP_002274772.1| PREDICTED: vesicle-associated protein 4-2-like [Vitis vinifera]

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/192 (72%), Positives = 154/192 (80%), Gaps = 19/192 (9%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MAVD +KS +E KVW LCKMPFWQS+N SSSSS+S             +S   V+QQ+QS
Sbjct: 1   MAVDSEKSFSEEKVWSLCKMPFWQSNNASSSSSTS-------------SSLQSVHQQSQS 47

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
            QV+      +S+ VS + KSLLPTRRRL LDP  KL+FPYEPGKQVRSAISIKN S+SH
Sbjct: 48  HQVLQ-----SSNAVSFVTKSLLPTRRRLHLDPPNKLYFPYEPGKQVRSAISIKNISRSH 102

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERP-TDQKSKVKFKIMSL 179
           +AFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVE PENNE+P  DQKSKVKFKIMSL
Sbjct: 103 LAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEHPENNEKPAVDQKSKVKFKIMSL 162

Query: 180 KVKGEMDYVPEL 191
           KVKGEMDYVPEL
Sbjct: 163 KVKGEMDYVPEL 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807736|ref|NP_001241916.1| uncharacterized protein LOC100794120 [Glycine max] gi|255637375|gb|ACU19016.1| unknown [Glycine max]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 153/191 (80%), Gaps = 11/191 (5%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           M V+ +KSG++GK W  C+MPFWQ+++  SSS++SM   +N +  N NN  S        
Sbjct: 1   MEVETEKSGSDGKGWSFCRMPFWQTTHTPSSSTTSMSYMHNVHPQNQNNFQS-------- 52

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
              + RSS  +S+ VSSMAKSLLPT+RRL LDPS KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 53  ---VDRSSHHSSTTVSSMAKSLLPTKRRLHLDPSNKLYFPYEPGKQVRSAIAIKNTCKSH 109

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPP GILAPGES+IATVFKFVEPPENNE+P DQKSKVKF IMSLK
Sbjct: 110 VAFKFQTTAPKSCYMRPPAGILAPGESIIATVFKFVEPPENNEKPIDQKSKVKFNIMSLK 169

Query: 181 VKGEMDYVPEL 191
           V+ EMDYVPEL
Sbjct: 170 VQSEMDYVPEL 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517568|ref|XP_003527459.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 158/191 (82%), Gaps = 5/191 (2%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MAV+  K G++GKVW  C MPFWQ+++ SSSSSS+       +S +++     V+ Q+Q 
Sbjct: 1   MAVESDKVGSDGKVWSFCSMPFWQTTHASSSSSSTTTTIPTTSSMHHS-----VHHQSQI 55

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
            Q + RS+   S+ VSS+AKSLLPTRRRLRLDP  KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 56  LQSLDRSTHQPSTTVSSVAKSLLPTRRRLRLDPPNKLYFPYEPGKQVRSAIAIKNTCKSH 115

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAPGES+IATVFKFVEPPENNE+P DQKS+VKFKIMSLK
Sbjct: 116 VAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKPIDQKSRVKFKIMSLK 175

Query: 181 VKGEMDYVPEL 191
           VKGEMDYVPEL
Sbjct: 176 VKGEMDYVPEL 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074058|gb|ACJ85389.1| unknown [Medicago truncatula]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 158/191 (82%), Gaps = 7/191 (3%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           M V+ +K G++GKVW  C+MPFWQ+SN  SSSS++  +++     N       V+ Q+QS
Sbjct: 1   MEVESEKPGSDGKVWNFCRMPFWQTSNNPSSSSTTTSSSSTSYMHN-------VHHQSQS 53

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
              + RS   +S+ VSS+AKSLLPTRRRLRLDP  KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 54  IHSVDRSVPQSSATVSSVAKSLLPTRRRLRLDPPNKLYFPYEPGKQVRSAITIKNTCKSH 113

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAPGES+IATVFKFVEPPENNE+PTDQKS+VKFKIMSLK
Sbjct: 114 VAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKPTDQKSRVKFKIMSLK 173

Query: 181 VKGEMDYVPEL 191
           V+GEMDYVPEL
Sbjct: 174 VQGEMDYVPEL 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504416|gb|AFK40274.1| unknown [Medicago truncatula]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/191 (70%), Positives = 157/191 (82%), Gaps = 7/191 (3%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           M V+ +K G++GKVW  C+MPFWQ+SN  SSSS++  +++     N       V+ Q+QS
Sbjct: 1   MEVESEKPGSDGKVWNFCRMPFWQTSNNPSSSSTTTSSSSTSYMHN-------VHHQSQS 53

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
              + RS   +S+ VSS+AKSLLPTRRRLRLDP  KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 54  IHSVDRSVPQSSATVSSVAKSLLPTRRRLRLDPPNKLYFPYEPGKQVRSAITIKNTCKSH 113

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAPGES+IATVFKFVEPPENNE+PTDQ S+VKFKIMSLK
Sbjct: 114 VAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKPTDQNSRVKFKIMSLK 173

Query: 181 VKGEMDYVPEL 191
           V+GEMDYVPEL
Sbjct: 174 VQGEMDYVPEL 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646547|gb|ACU23748.1| unknown [Glycine max]

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 155/191 (81%), Gaps = 11/191 (5%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MAV+  K+G+ GK W  C MPFWQ+++ SS+SS++  + ++            V+ Q+Q 
Sbjct: 1   MAVESDKTGSVGKGWSFCSMPFWQTTHASSTSSTTTFSMHH-----------SVHHQSQI 49

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
            Q + RS+   S+ VSS+AKSLLPTRRRLRLDP  KL+FPYEPGKQVRSAI+IKNT KSH
Sbjct: 50  LQSLDRSTHQPSTTVSSVAKSLLPTRRRLRLDPPNKLYFPYEPGKQVRSAIAIKNTCKSH 109

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAPGES+IATVFKFVEPPENNE+P DQKS+VKFKIMSLK
Sbjct: 110 VAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKPIDQKSRVKFKIMSLK 169

Query: 181 VKGEMDYVPEL 191
           VKGEMDYVPEL
Sbjct: 170 VKGEMDYVPEL 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475725|ref|XP_004154534.1| PREDICTED: vesicle-associated protein 4-2-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 150/191 (78%), Gaps = 8/191 (4%)

Query: 1   MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
           MAV ++KSG +GKVW LC +PFWQ+SN  SSSSSS        SS++++    V+ Q+  
Sbjct: 1   MAVADEKSGPDGKVWSLCSIPFWQNSNAPSSSSSSS-------SSSSSSVIHRVHLQSNG 53

Query: 61  QQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH 120
            +    SS  +   VS++AKSL PT+RRLRLDPS KL+FP+EPGKQV+SAI IKNTSK+H
Sbjct: 54  HKPAEHSSS-HPGVVSAIAKSLCPTKRRLRLDPSNKLYFPFEPGKQVKSAIEIKNTSKNH 112

Query: 121 VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLK 180
           VAFKFQTTAPKSCYMRPPGGILAP ES+IATVFKFVEP +NN++  D K +VKFKI+SLK
Sbjct: 113 VAFKFQTTAPKSCYMRPPGGILAPDESIIATVFKFVEPLDNNDKHVDHKRRVKFKIVSLK 172

Query: 181 VKGEMDYVPEL 191
           VK ++DYVPEL
Sbjct: 173 VKSDLDYVPEL 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572975|ref|NP_974584.1| vesicle-associated membrane family protein [Arabidopsis thaliana] gi|332659053|gb|AEE84453.1| vesicle-associated membrane family protein [Arabidopsis thaliana]

 Score =  228 bits (582), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 149/225 (66%), Gaps = 45/225 (20%)

Query: 1   MAVDEKKSGAEGKV-WGLCKMPFWQSS---NGSSSSSSS--------------------- 35
           M + E+K  ++GK  WG  K+PF  SS   N +SS+++S                     
Sbjct: 1   MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60

Query: 36  -------MQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRR 88
                    +   YN  + + S      QNQ            S +VSS+AKS LPT+RR
Sbjct: 61  HHQHHHQHHHQLGYNGPHGDGSG-----QNQHP--------TPSPSVSSVAKSFLPTKRR 107

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L+LDPS KL+FPYEPGKQVRSAI IKNTSKSHVAFKFQTTAPKSC+MRPPG ILAPGE++
Sbjct: 108 LKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETI 167

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVC 193
           IATVFKFVEPPENNE+P DQ+S+VKFKIMSLKVKG MDYVPELVC
Sbjct: 168 IATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPELVC 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.572	0.397	0.736	7.6e-46
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.502	0.429	0.86	1.7e-43
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.572	0.428	0.739	4.6e-41
FB|FBgn0028379	218	fan "farinelli" [Drosophila me	0.502	0.458	0.308	1.8e-07
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.457	0.413	0.343	2.4e-07
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.417	0.549	0.352	2.9e-07
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.417	0.347	0.352	3.2e-07
UNIPROTKB|F1P206	250	VAPA "Uncharacterized protein"	0.417	0.332	0.352	8e-07
CGD|CAL0002790	411	orf19.1212 [Candida albicans (	0.427	0.206	0.333	1.1e-06
WB|WBGene00018008	245	vpr-1 [Caenorhabditis elegans	0.462	0.375	0.363	1.3e-06

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 84/114 (73%), Positives = 93/114 (81%)

Query:    78 MAKSXXXXXXXXXXDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRP 137
             +A+S          DPS KL+FPYEPGKQVRSAI IKNTSKSHVAFKFQTT PKSC+MRP
Sbjct:    89 VARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRP 148

Query:   138 PGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
              G ILAPGE +IATVFKFVEPPENNE+P +QKS VKFKIMSLK+K   DY+PEL
Sbjct:   149 AGAILAPGEEIIATVFKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPTDYMPEL 202

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 86/100 (86%), Positives = 93/100 (93%)

Query:    92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
             DP +KLFFPYEPGKQVRSA+ IKN SKSHVAFKFQTTAPKSC+MRPPGGILAPGES+IAT
Sbjct:    49 DPPSKLFFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIAT 108

Query:   152 VFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
             VFKFVE PENNE+P DQK KVKFKI+SLKVKG M+YVPEL
Sbjct:   109 VFKFVEHPENNEKPLDQKCKVKFKIVSLKVKGPMEYVPEL 148

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 85/115 (73%), Positives = 96/115 (83%)

Query:    78 MAKSXXXXXXXXXXDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRP 137
             +A+S          DPS+ L+FPYEPGKQVRSAI +KNTSKSH AFKFQTTAPKSCYMRP
Sbjct:    66 VARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRP 125

Query:   138 PGGILAPGESLIATVFKFVEPPENNER-PTDQKSKVKFKIMSLKVKGEMDYVPEL 191
             PGG+LAPGES+ ATVFKFVE PENNE+ P +QKSKVKFKIMSLKVK  ++YVPEL
Sbjct:   126 PGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPEL 180

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

FB|FBgn0028379 fan "farinelli" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/107 (30%), Positives = 56/107 (52%)

Query:    92 DPSTKLFFPYEPGKQVRSAISIKNTSKSH-VAFKFQTTAPKSCYMRPPGGILAPGESLIA 150
             DP   + F     + V   + IKNTSK+  +AFK +TT PK  Y+RP  G+L P + +  
Sbjct:    12 DPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTTPKLFYVRPNIGVLGPEQKVSV 71

Query:   151 TVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELVCIASP 197
              +F  ++P    +     K + KF +++ +V G++  V E   + +P
Sbjct:    72 DIF--MQPILQEQI----KKRHKFLLLAAEVTGDISDVQEFWKMQNP 112

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0007291 "sperm individualization" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 33/96 (34%), Positives = 51/96 (53%)

Query:    96 KLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKF 155
             +L F +E  KQ    + + N ++++VAFK +TT+PK  ++RP  G++ P +S I  V   
Sbjct:    16 ELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQ 75

Query:   156 VEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
              +     E P D + K KF + S  V    D V EL
Sbjct:    76 AQ----REYPPDMQCKDKFLLQSTIVPPHTD-VDEL 106

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query:    92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
             DP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG S+I +
Sbjct:    17 DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVS 76

Query:   152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
             V   ++P + +  P ++KSK KF + ++
Sbjct:    77 VM--LQPFDYD--P-NEKSKHKFMVQTI 99

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 31/88 (35%), Positives = 48/88 (54%)

Query:    95 TKLFFPYEPGKQVRSAISIKN-TSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVF 153
             T+L FP+E  KQ   ++ + N T+   VAFK +TT P+   +RP  G++ PG+S   TV 
Sbjct:    12 TELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT 71

Query:   154 KFVEPPENNERPTDQKSKVKFKIMSLKV 181
                +     E P D + K KF + ++ V
Sbjct:    72 MQAQ----KEAPLDMQCKDKFLVQTVVV 95

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1P206 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 31/88 (35%), Positives = 50/88 (56%)

Query:    92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
             DP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG S+I +
Sbjct:    18 DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVS 77

Query:   152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
             V   ++P + +  P ++KSK KF + ++
Sbjct:    78 VM--LQPFDYD--P-NEKSKHKFMVQTI 100

GO:0005198 "structural molecule activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0070972 "protein localization to endoplasmic reticulum" evidence=IEA

CGD|CAL0002790 orf19.1212 [Candida albicans (taxid:5476)]

 Score = 120 (47.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%)

Query:    98 FFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL-IATVFKFV 156
             FF     KQ+   +++ N + + +AFK +TTAPK   +RP   I+ PG+SL I+ + +  
Sbjct:    51 FFSGSFTKQITEYLTLSNPTNTPLAFKVKTTAPKLYCVRPNASIVQPGDSLQISIILQGF 110

Query:   157 EPPENNERPTDQKSKVKFKIMSLKVKGEMD 186
               P     P D K K KF ++S+     +D
Sbjct:   111 SQP----LPNDYKCKDKFLLVSVPAPNSID 136

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IEA

GO:0048309 "endoplasmic reticulum inheritance" evidence=IEA

GO:0006348 "chromatin silencing at telomere" evidence=IEA

GO:0032377 "regulation of intracellular lipid transport" evidence=IEA

GO:0033149 "FFAT motif binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

WB|WBGene00018008 vpr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 36/99 (36%), Positives = 53/99 (53%)

Query:    93 PSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATV 152
             P+ +L F       V S +++KNTS + V FK +TTAPK   +RP  G+L  G+S   TV
Sbjct:    12 PNRELVFTGPFSDVVTSHMTLKNTSTNPVCFKVKTTAPKQYCVRPNSGLLKSGDSKQITV 71

Query:   153 FKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
                ++P E    P+D   + KF + S     E D +P+L
Sbjct:    72 M--LQPLEGI--PSDA-GRHKFMVQSCVAPSE-D-LPDL 103

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G21450	vesicle-associated membrane family protein / VAMP family protein; vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN- structural molecule activity; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- PapD-like (InterPro-IPR008962), Major sperm protein (InterPro-IPR000535); BEST Arabidopsis thaliana protein match is- vesicle-associated membrane family protein / VAMP family protein (TAIR-AT4G05060.1); Has 2198 Blast hits to 1828 proteins in 219 [...] (295 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G22520	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (179 aa)							•		0.780
	IQD27	IQD27 (IQ-domain 27); calmodulin binding; IQ-domain 27 (IQD27); FUNCTIONS IN- calmodulin bindin [...] (351 aa)							•		0.679
	XYLT	XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE); xylosyltransferase; Encodes a beta-1,2 [...] (534 aa)							•		0.621
	WRKY22	WRKY22; transcription factor; member of WRKY Transcription Factor; Group II-e ; Transcription f [...] (298 aa)							•		0.534
	KING1	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1); SNF1-RELATED PROTEIN KINASE REG [...] (424 aa)				•					0.505
	HGO	HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygena [...] (461 aa)				•					0.483
	F2G19.22	SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding; s-ribonuclease bin [...] (325 aa)				•					0.480
	AT4G26060	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (133 aa)				•					0.479
	ACLA-3	ACLA-3; ATP citrate synthase; Encodes subunit A of the heteromeric enzyme ATP citrate lyase (AC [...] (424 aa)				•					0.475
	AT4G35750	Rho-GTPase-activating protein-related; Rho-GTPase-activating protein-related; FUNCTIONS IN- mol [...] (202 aa)				•					0.465

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	5e-25
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	3e-05

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 93.6 bits (233), Expect = 5e-25
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L +DP   LFF     KQ  S +++ N S   VAFK +TT PK   +RP  GIL PGES+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPELV 192
             T+    +P +          K KF I   +   +     E  
Sbjct: 62  TITI--TRQPFDKEPGD---PKKDKFVIQYTEAPDDAKDAKEAF 100

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 94  STKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVF 153
           S +  F      + +   S++N S   V FK +TTAPK   +RP  G++ P  ++   V 
Sbjct: 6   SPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV- 64

Query: 154 KFVEPPENNERPTDQKSKVKFKIMSLKVK 182
             +      E   D K + KF I S +  
Sbjct: 65  --ILQGLTEEPAPDFKCRDKFLIQSYRFD 91

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG0439	218	consensus VAMP-associated protein involved in inos	99.91
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.91
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.91
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.49
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	96.49
PRK09918	230	putative fimbrial chaperone protein; Provisional	93.14
PF14646	426	MYCBPAP: MYCBP-associated protein family	92.74
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.62
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	90.94
PRK09926	246	putative chaperone protein EcpD; Provisional	88.06
PRK15249	253	fimbrial chaperone protein StbB; Provisional	86.04
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	85.5
PRK15211	229	fimbrial chaperone protein PefD; Provisional	85.3
PRK15299	227	fimbrial chaperone protein StiB; Provisional	84.55
PRK11385	236	putativi pili assembly chaperone; Provisional	83.15
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	81.5
PRK15208	228	long polar fimbrial chaperone LpfB; Provisional	81.06

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.3e-24  Score=180.19  Aligned_cols=110  Identities=38%  Similarity=0.577  Sum_probs=98.9

Q ss_pred             CCCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCC
Q 029067           83 LPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENN  162 (199)
Q Consensus        83 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~  162 (199)
                      ...+.+|.|+|..+|+|.+++.+++.+.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|.+   +| ..
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~---q~-~~   78 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTH---QP-FE   78 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEe---cc-Cc
Confidence            356788999998899999999999999999999999999999999999999999999999999999999988   66 44


Q ss_pred             CCCCCCCCCceEEEEEEEeCCC-CCchhhhhcccC
Q 029067          163 ERPTDQKSKVKFKIMSLKVKGE-MDYVPELVCIAS  196 (199)
Q Consensus       163 e~p~~~k~kDKFLVqSv~v~~~-~d~~~elFk~a~  196 (199)
                      ..|.+.+|+|||+||++.++.+ ...+.++|+..+
T Consensus        79 ~~P~d~~~r~kF~v~~~~~~~~~~~~~~~~~~~~k  113 (218)
T KOG0439|consen   79 KSPPDFKSRHKFLIQSLKAPPPTTRDVVDLWKFQK  113 (218)
T ss_pred             cCchhhcccceEEEEEEecCCccccchhhhccccc
Confidence            5577888999999999999986 566678887654

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.91  E-value=4e-24  Score=182.80  Aligned_cols=104  Identities=25%  Similarity=0.342  Sum_probs=93.3

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCC
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTD  167 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~  167 (199)
                      .|.|+|  ++.|..++..+.++.+.|.|++.++|+||||||+|+.||||||.|+|+|++.+.|.|+|   |+...|+.++
T Consensus         2 aveisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVil---q~l~eEpapd   76 (242)
T COG5066           2 AVEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVIL---QGLTEEPAPD   76 (242)
T ss_pred             ceEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEe---eccccCCCCC
Confidence            377888  67788789999999999999999999999999999999999999999999999999999   7888888889


Q ss_pred             CCCCceEEEEEEEeCCCC--CchhhhhcccC
Q 029067          168 QKSKVKFKIMSLKVKGEM--DYVPELVCIAS  196 (199)
Q Consensus       168 ~k~kDKFLVqSv~v~~~~--d~~~elFk~a~  196 (199)
                      .+||||||||++..+.+.  .+.+++|...+
T Consensus        77 fKCrdKFLiqs~~~~~~l~g~d~ad~wt~~s  107 (242)
T COG5066          77 FKCRDKFLIQSYRFDWRLSGSDFADHWTSSS  107 (242)
T ss_pred             ccccceeEEEEeccChhhccchHHHHHHhhc
Confidence            999999999999998753  33489997654

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.91  E-value=1.4e-23  Score=157.24  Aligned_cols=102  Identities=31%  Similarity=0.429  Sum_probs=81.7

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCCC
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQ  168 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~~  168 (199)
                      |.|+|.+.|.|.+++++...+.|+|+|+++.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|......  .
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~---~~~~~~~~--~   76 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITF---QPFDFEPS--N   76 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE----SSSTTTT--S
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEE---EecccCCC--C
Confidence            789999999999999999999999999999999999999999999999999999999999999999   56543321  2


Q ss_pred             CCCceEEEEEEEeCCCCCch----hhhhccc
Q 029067          169 KSKVKFKIMSLKVKGEMDYV----PELVCIA  195 (199)
Q Consensus       169 k~kDKFLVqSv~v~~~~d~~----~elFk~a  195 (199)
                      ..+|||+|+++.++++....    ..+|+++
T Consensus        77 ~~~dkf~I~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
T PF00635_consen   77 KKKDKFLIQSIVVPDNATDPKKDFKQIWKNG  107 (109)
T ss_dssp             TSSEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred             CCCCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence            34999999999998776433    4455544

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.49  E-value=1.8e-06  Score=64.18  Aligned_cols=66  Identities=29%  Similarity=0.449  Sum_probs=58.2

Q ss_pred             cEEecCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEccCC--CCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYE-PGKQVRSAISIKNTSKSHVAFKFQTTA--PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e-~~k~v~s~L~LtN~S~~~VAFKVKTTa--P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      .|.++|. +|.|-.- .+......|+|+|.+..++.|+|+.-.  ...|.|.|..|+|+||+++.|.|.+
T Consensus         3 ~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~   71 (102)
T PF14874_consen    3 TLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTF   71 (102)
T ss_pred             EEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEE
Confidence            5899996 9999763 477888999999999999999997433  5689999999999999999999999

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=96.49  E-value=0.036  Score=42.44  Aligned_cols=62  Identities=23%  Similarity=0.403  Sum_probs=50.9

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCC----C-----CceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTA----P-----KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa----P-----~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      |.|+|. .+.|..   ++....++|+|.++.++.+.+....    +     ..+.|-|+.-.|+||++..|.|..
T Consensus         2 i~i~~t-rii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv~~   72 (122)
T PF00345_consen    2 IQISPT-RIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRVYR   72 (122)
T ss_dssp             EEESSS-EEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEEEE
T ss_pred             EEEccE-EEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEEEe
Confidence            678896 888875   2236899999999999999986543    1     268999999999999999999944

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=93.14  E-value=1.2  Score=38.48  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCC-----CceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAP-----KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP-----~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.++|. .+.|...   +-...++|+|.++.++...+.....     .-|.|-|+.-.|+||++..|.|.+
T Consensus        25 ~v~l~~t-Rvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~   92 (230)
T PRK09918         25 GMVPETS-VVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFIL   92 (230)
T ss_pred             eEEEccE-EEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            5888885 7888753   3357999999999876655533211     359999999999999999999987

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=92.74  E-value=0.54  Score=43.97  Aligned_cols=66  Identities=18%  Similarity=0.431  Sum_probs=54.6

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEE-EEcCCCCeEEEEEcc------------CCCCceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAIS-IKNTSKSHVAFKFQT------------TAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~-LtN~S~~~VAFKVKT------------TaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      ..+.+.-.|.|...++..+...|. |.|.+..-|-|.-+-            .....|......|+|.||++..|.|+.
T Consensus       231 ~~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F  309 (426)
T PF14646_consen  231 PEVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMF  309 (426)
T ss_pred             CccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEE
Confidence            445555689999999887777777 999999999998432            225678999999999999999999998

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.62  E-value=0.5  Score=30.87  Aligned_cols=43  Identities=28%  Similarity=0.166  Sum_probs=35.4

Q ss_pred             EEEEcCCCCe-EEEEEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067          111 ISIKNTSKSH-VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus       111 L~LtN~S~~~-VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      ++|+|.++++ +..+|+|+ =+...+......|.||++..|.|+.
T Consensus         2 F~~~N~g~~~L~I~~v~ts-CgCt~~~~~~~~i~PGes~~i~v~y   45 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQTS-CGCTTAEYSKKPIAPGESGKIKVTY   45 (45)
T ss_pred             EEEEECCCCcEEEEEeeEc-cCCEEeeCCcceECCCCEEEEEEEC
Confidence            6899999986 45677765 5677888888999999999999863

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=90.94  E-value=1  Score=34.40  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=34.2

Q ss_pred             EEEEEEEcCCCCeEEEEEccCCCCceEe-cCCcce-eCCCCeEEEEEEee
Q 029067          108 RSAISIKNTSKSHVAFKFQTTAPKSCYM-RPPGGI-LAPGESLIATVFKF  155 (199)
Q Consensus       108 ~s~L~LtN~S~~~VAFKVKTTaP~~Y~V-RPn~Gi-L~Pgesi~I~Vtl~  155 (199)
                      ..+|+|.|.+.++..|.|+...+..+.+ .|...+ |+||+...+.|++.
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~   83 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVT   83 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEE
Confidence            4899999999999999999888778888 665554 99999998888873

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=88.06  E-value=6.5  Score=34.36  Aligned_cols=65  Identities=8%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCC----------ceEecCCcceeCCCCeEEEEEEee
Q 029067           87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPK----------SCYMRPPGGILAPGESLIATVFKF  155 (199)
Q Consensus        87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~----------~Y~VRPn~GiL~Pgesi~I~Vtl~  155 (199)
                      --|.|+|. .+.|...   +-...|.|.|.++.++.--.-....+          -|.|-|+.--|+||+...|.|.+.
T Consensus        25 A~i~l~~T-RvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~   99 (246)
T PRK09926         25 ADIVISGT-RIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT   99 (246)
T ss_pred             eeEEeCce-EEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence            45899995 8888752   23579999999998766554332211          399999999999999999999983

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=86.04  E-value=9.2  Score=33.64  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCC------C-----CceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P-----~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|+|. .+.|....   -...|+|.|.++.++....-+.+      |     .-|.|-|+.--|+||+...|.|.+
T Consensus        29 ~l~l~~T-Rviy~~~~---~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~  102 (253)
T PRK15249         29 SVTILGS-RIIYPSTA---SSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY  102 (253)
T ss_pred             EEEeCce-EEEEeCCC---cceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE
Confidence            5889995 88886432   35799999999886554432211      1     139999999999999999999998

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=85.50  E-value=12  Score=32.30  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=46.5

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc----CC-----CCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT----TA-----PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT----Ta-----P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|++. .+.|...   +-...|+|.|.++.++.  |++    ..     ..-|.|-|+.--|+||+...|.|..
T Consensus        20 ~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~   89 (226)
T PRK15295         20 SIVVGGT-RLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIR   89 (226)
T ss_pred             cEEeCce-EEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEE
Confidence            5888885 7888753   23579999999987533  442    11     2249999999999999999999988

>PRK15211 fimbrial chaperone protein PefD; Provisional

Probab=85.30  E-value=11  Score=32.79  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccC--C----CCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTT--A----PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT--a----P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      .|.+++. .+.|+..   .-..+|+|+|.++.++.-.....  .    ..-|.|-|+.--|+||+...|.|.+
T Consensus        23 ~v~l~~T-RvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~   91 (229)
T PRK15211         23 AFVLNGT-RFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMK   91 (229)
T ss_pred             EEEECce-EEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            4788885 7888742   23579999999988644333221  1    1249999999999999999999998

>PRK15299 fimbrial chaperone protein StiB; Provisional

Probab=84.55  E-value=13  Score=32.02  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCC--------CCceEecCCcceeCCCCeEEEEEEee
Q 029067           87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTA--------PKSCYMRPPGGILAPGESLIATVFKF  155 (199)
Q Consensus        87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa--------P~~Y~VRPn~GiL~Pgesi~I~Vtl~  155 (199)
                      --|.|+|. .+.|...   +-..+|+|+|.++.++.-..-+..        ..-|.|-|+.--|+||+...|.|...
T Consensus        22 a~i~l~~T-Rvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   94 (227)
T PRK15299         22 AGINIGTT-RVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT   94 (227)
T ss_pred             eeEEECce-EEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence            35889995 7888653   235799999998876544432111        12499999999999999999999983

>PRK11385 putativi pili assembly chaperone; Provisional

Probab=83.15  E-value=17  Score=31.75  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccC------------CCCceEecCCcceeCCCCeEEEEEEe
Q 029067           87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTT------------APKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT------------aP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      --|.+++. .+.|..   ++-...|+|.|.++.++.=.....            ...-|.|-|+.--|+||+...|.|.+
T Consensus        26 A~v~l~~T-RvIy~~---~~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~  101 (236)
T PRK11385         26 AGVVVGGT-RFIFPA---DRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR  101 (236)
T ss_pred             eeEEeCce-EEEEcC---CCceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence            35888885 888874   233579999999998644333211            11249999999999999999999998

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.50  E-value=3.9  Score=30.93  Aligned_cols=51  Identities=18%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCeeEEEEEEEcCCCCeEEEEEccC-----C---CCceE--ec-----------CCcceeCCCCeEEEEEEe
Q 029067          104 GKQVRSAISIKNTSKSHVAFKFQTT-----A---PKSCY--MR-----------PPGGILAPGESLIATVFK  154 (199)
Q Consensus       104 ~k~v~s~L~LtN~S~~~VAFKVKTT-----a---P~~Y~--VR-----------Pn~GiL~Pgesi~I~Vtl  154 (199)
                      +...+.+|+|+|.+++.+.|+|.-.     .   .+.|.  ..           |..=.|+||++..|.|++
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti   78 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTI   78 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEE
Confidence            3446789999999999999997644     1   12222  11           112248999999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PRK15208 long polar fimbrial chaperone LpfB; Provisional

Probab=81.06  E-value=21  Score=30.79  Aligned_cols=64  Identities=13%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEE-EE-EccCCC---CceEecCCcceeCCCCeEEEEEEe
Q 029067           87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVA-FK-FQTTAP---KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VA-FK-VKTTaP---~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      --|.++|. .+.|...   +-...|+|+|.+++ ++. +. |.....   .-|.|-|+.--|+||+...|.|..
T Consensus        21 agv~l~~T-RvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~   90 (228)
T PRK15208         21 GGVALSST-RVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVN   90 (228)
T ss_pred             ccEEeCce-EEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEE
Confidence            35889995 8888753   23579999999864 333 22 211111   139999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
2rr3_A	130	Solution Structure Of The Complex Between Human Vap		8e-05
2cri_A	147	Solution Structure Of The Msp Domain Of Mouse Vamp-		2e-04
1z9o_A	128	1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp		3e-04
1z9l_A	128	1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp		4e-04

>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 92  DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
           DP T L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG ++  +
Sbjct: 13  DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVS 72
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
           V   ++P + +    ++KSK KF + ++
Sbjct: 73  V--MLQPFDYDP---NEKSKHKFMVQTI 95

>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92  DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
           DP + L F       V + + ++N S   V FK +TTAP+   +RP  GI+ PG   I T
Sbjct: 18  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGS--IVT 75
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
           V   ++P + +    ++KSK KF + ++
Sbjct: 76  VSVMLQPFDYD---PNEKSKHKFMVQTI 100

>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92  DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
           DP + L F       V + + ++N S   V FK +TTAP+   +RP  G++ PG   I T
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
           V   ++P + +    ++KSK KF + ++
Sbjct: 72  VSVMLQPFDYD---PNEKSKHKFMVQTI 96

>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92  DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
           DP + L F       V + + ++N S   V FK +TTAP+   +RP  G++ PG   I T
Sbjct: 14  DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
           V   ++P + +    ++KSK KF + ++
Sbjct: 72  VSVXLQPFDYD---PNEKSKHKFXVQTI 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
2cri_A	147	Vesicle-associated membrane protein-associated pro	1e-23
1z9l_A	128	Vesicle-associated membrane protein-associated pro	5e-23
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	4e-21
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	7e-18
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-09
1row_A	109	SSP-19, MSP-domain protein like family member; bet	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	9e-05

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 90.5 bits (224), Expect = 1e-23
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 76  SSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM 135
           SS +  +    + L LDP + L F       V + + ++N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 136 RPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
           RP  GI+ PG  +  +V       + NE+        KF + ++     +  +  +
Sbjct: 62  RPNSGIIDPGSIVTVSVMLQPFDYDPNEKSKH-----KFMVQTIFAPPNISDMEAV 112

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 88.5 bits (219), Expect = 5e-23
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 76  SSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM 135
           S MAK      + L LDP + L F       V + + ++N S   V FK +TTAP+   +
Sbjct: 2   SHMAKH----EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 57

Query: 136 RPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
           RP  G++ PG  +  +V       + NE+        KF + ++     +  +  +
Sbjct: 58  RPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKH-----KFMVQTIFAPPNISDMEAV 108

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 84.4 bits (208), Expect = 4e-21
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 13/124 (10%)

Query: 67  SSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQ 126
           SS  +     S+ K  L     L + P+ +L+F      + ++ I + N +K+ VAFK +
Sbjct: 2   SSGSSGKKPLSVFKGPL-----LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVR 56

Query: 127 TTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMD 186
           TTAP+   ++P      PG S+   V                 ++ +F IM+ +++    
Sbjct: 57  TTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL--------TVSAQDRFLIMAAEMEQSSG 108

Query: 187 YVPE 190
             P 
Sbjct: 109 TGPA 112

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 74.9 bits (184), Expect = 7e-18
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           +   PS K+ F      +    I I N     + +  +TT  +   + PP G+L P E +
Sbjct: 9   INTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKV 68

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKV 181
           +  V          +   D     +  I     
Sbjct: 69  LMAVSCDTFNAATEDLNND-----RITIEWTNT 96

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           + +DP T   +P   G       +I + S S +AFK +++  +   +RP  G +      
Sbjct: 11  INVDPPT-GNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGE 184
              + +   PP+ +          K  I   +V  E
Sbjct: 67  KLDINRLPGPPKED----------KIVIQYAEVPAE 92

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 14/96 (14%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L  DP         P   V S   + N     + FK +++      + P  G + P  S 
Sbjct: 3   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGE 184
              +           R      + K  +       +
Sbjct: 59  DVVIT----------RTAGAPKEDKLVVHFASAPAD 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 77/223 (34%)

Query: 1   MAVDEKKSGAEGKVWGL-----------CKMP---FWQSSNGSSSSSSSMQNNNNYNSSN 46
           +       G+ GK W +           CKM    FW +    +S  + ++         
Sbjct: 158 VL------GS-GKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---- 205

Query: 47  NNNSSSHVYQQNQSQQVMGRSSV-VNSSNVSSMAKSLLPTRRRLR----LDPSTKLFFPY 101
                 +    N + +    S++ +   ++ +  + LL ++        L          
Sbjct: 206 -----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--------- 251

Query: 102 EPGKQVRSAISIKNTSKSHVAFKFQ-----TTAPKSCYMRPPGGILAPGESLIATVFKFV 156
                V++A +         AF        TT  K          +   + L A     +
Sbjct: 252 ----NVQNAKAWN-------AFNLSCKILLTTRFKQ---------VT--DFLSAATTTHI 289

Query: 157 EPPENNERPTDQKSKVKF-KIMSLKVKGEMDYVPELVCIASPL 198
               ++   T  + K    K +  + +     +P  V   +P 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPR 328

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 88  RLRLDPSTKLFFPYEPGKQVRSA-ISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGE 146
           R  LD   KL F   P K      + ++N    +  F  +T  P    + P  G L  GE
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--FSIEPAIGTLNVGE 80

Query: 147 SLIATV 152
           S+   V
Sbjct: 81  SMQLEV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.97
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.97
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.97
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.96
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.96
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.95
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.21
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.82
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.8
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.36
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.15
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.59
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	89.38
2co7_B	221	SAFB chaperone, putative fimbriae assembly chapero	85.82
2xg5_A	218	PAPD, chaperone protein PAPD; chaperone, chaperone	83.78
4djm_A	239	DRAB; chaperone, PILI; 2.52A {Escherichia coli}	82.3
1l4i_A	206	SFAE protein; periplasmic chaperone, immunoglobuli	80.91
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	80.01

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.97  E-value=1.9e-31  Score=208.31  Aligned_cols=108  Identities=28%  Similarity=0.448  Sum_probs=98.2

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067           85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER  164 (199)
Q Consensus        85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~  164 (199)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|++   +|...+ 
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~-   82 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD-   82 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence            4568999998899999999999999999999999999999999999999999999999999999999999   675433 


Q ss_pred             CCCCCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067          165 PTDQKSKVKFKIMSLKVKGEMDYVPELVCIASP  197 (199)
Q Consensus       165 p~~~k~kDKFLVqSv~v~~~~d~~~elFk~a~P  197 (199)
                       ++.+|+|||+||++.++++.+++.++|+++++
T Consensus        83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~  114 (128)
T 1z9l_A           83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKP  114 (128)
T ss_dssp             -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCG
T ss_pred             -cccccCCEEEEEEEECCCCcchHHHHhhcCCC
Confidence             34689999999999999988667999998764

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.97  E-value=1.9e-31  Score=213.65  Aligned_cols=108  Identities=29%  Similarity=0.450  Sum_probs=98.5

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067           85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER  164 (199)
Q Consensus        85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~  164 (199)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+|   +|...+ 
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~-   86 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD-   86 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999999   675433 


Q ss_pred             CCCCCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067          165 PTDQKSKVKFKIMSLKVKGEMDYVPELVCIASP  197 (199)
Q Consensus       165 p~~~k~kDKFLVqSv~v~~~~d~~~elFk~a~P  197 (199)
                       ++++|+|||+||++.++++.++..++|++.++
T Consensus        87 -p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~  118 (147)
T 2cri_A           87 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKP  118 (147)
T ss_dssp             -TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCT
T ss_pred             -ccccCCCEEEEEEEEcCCCcccHHHHhhcCCC
Confidence             34789999999999999887667999998765

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.97  E-value=3.6e-30  Score=207.95  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=94.1

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067           85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER  164 (199)
Q Consensus        85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~  164 (199)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+|   ++.. + 
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~-   89 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T-   89 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence            4678999998899999999999999999999999999999999999999999999999999999999999   6642 2 


Q ss_pred             CCCCCCCceEEEEEEEeC--CCC--CchhhhhcccCC
Q 029067          165 PTDQKSKVKFKIMSLKVK--GEM--DYVPELVCIASP  197 (199)
Q Consensus       165 p~~~k~kDKFLVqSv~v~--~~~--d~~~elFk~a~P  197 (199)
                         .+++|||+||++.++  ++.  +++.++|++..+
T Consensus        90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~  123 (152)
T 1wic_A           90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPR  123 (152)
T ss_dssp             ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCT
T ss_pred             ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCC
Confidence               379999999999998  443  356899998754

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.96  E-value=1.3e-29  Score=198.60  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=91.5

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCC
Q 029067           86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERP  165 (199)
Q Consensus        86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p  165 (199)
                      ...|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|+|   ++...++ 
T Consensus         6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~-   81 (126)
T 1msp_A            6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT-   81 (126)
T ss_dssp             CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-
T ss_pred             CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-
Confidence            347999999999999999999999999999999999999999999999999999999999999999999   6754432 


Q ss_pred             CCCCCCceEEEEEEEeCCCC--Cchhhhhcc
Q 029067          166 TDQKSKVKFKIMSLKVKGEM--DYVPELVCI  194 (199)
Q Consensus       166 ~~~k~kDKFLVqSv~v~~~~--d~~~elFk~  194 (199)
                      . ...+|||+||++.++++.  |+..++|.+
T Consensus        82 ~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~  111 (126)
T 1msp_A           82 E-DLNNDRITIEWTNTPDGAAKQFRREWFQG  111 (126)
T ss_dssp             S-CCSSCEEEEEEEECCTTCCSSCCTHHHHS
T ss_pred             C-ccCCCEEEEEEEECCCCcchhhhHHhhcC
Confidence            2 345999999999999886  666565544

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.96  E-value=4.5e-29  Score=192.34  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCCC
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQ  168 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~~  168 (199)
                      |.|+|. +|.|.++.+   .+.|+|+|+++++||||||||+|++|||||+.|+|+||+++.|.|++   |++       .
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~   68 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   68 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence            899997 699998743   69999999999999999999999999999999999999999999999   553       2


Q ss_pred             CCCceEEEEEEEeCCCCCchhhhhcccCCC
Q 029067          169 KSKVKFKIMSLKVKGEMDYVPELVCIASPL  198 (199)
Q Consensus       169 k~kDKFLVqSv~v~~~~d~~~elFk~a~P~  198 (199)
                      .++|||+||++.++++..++.++|++..|.
T Consensus        69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~~   98 (109)
T 1row_A           69 PKEDKLVVHFASAPADATDAQAAFVAVAPA   98 (109)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCCC
T ss_pred             CCCCEEEEEEEECCCCCCCHHHHhhcCCCC
Confidence            589999999999998876679999998773

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.95  E-value=9.3e-28  Score=187.37  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCC
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTD  167 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~  167 (199)
                      ++.++|. +|.|+++.   ..+.|+|+|+++++||||||||+|++|||||+.|+|+||+++.|.|++   |++       
T Consensus        10 ~~~~~p~-~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~-------   75 (116)
T 1m1s_A           10 MINVDPP-TGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG-------   75 (116)
T ss_dssp             SEEEESS-EEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred             eeecCCC-eEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence            6899996 99999874   389999999999999999999999999999999999999999999999   554       


Q ss_pred             CCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067          168 QKSKVKFKIMSLKVKGEMDYVPELVCIASP  197 (199)
Q Consensus       168 ~k~kDKFLVqSv~v~~~~d~~~elFk~a~P  197 (199)
                      ..++|||+||++.++++..+++++|++..|
T Consensus        76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~  105 (116)
T 1m1s_A           76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ  105 (116)
T ss_dssp             CSCEEEEEEEEEEECTTCCCTTHHHHTTCC
T ss_pred             CCCCCEEEEEEEECCCCCCCHHHHHhcCCC
Confidence            157999999999999877667999999876

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=6.7e-06  Score=62.39  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=61.9

Q ss_pred             cEEecCCCceEeeCCC-CCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCC
Q 029067           88 RLRLDPSTKLFFPYEP-GKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPT  166 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~-~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~  166 (199)
                      .|.+ | +.|.|..-. +...+..|.|+|.++.++.|++++.  .-|.|.|..|.|+||+++.|+|+.   .|...    
T Consensus        25 ~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~----   93 (122)
T 2ys4_A           25 ILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV----   93 (122)
T ss_dssp             CCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS----
T ss_pred             EECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC----
Confidence            4555 5 588886543 6677899999999999999999975  469999999999999999999999   56522    


Q ss_pred             CCCCCceEEEEE
Q 029067          167 DQKSKVKFKIMS  178 (199)
Q Consensus       167 ~~k~kDKFLVqS  178 (199)
                       ......+.|..
T Consensus        94 -g~~~~~l~v~~  104 (122)
T 2ys4_A           94 -GDHSGRLIVCY  104 (122)
T ss_dssp             -BCCCCBCEEEE
T ss_pred             -ccEEEEEEEEE
Confidence             23555555553

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=5.8e-05  Score=55.47  Aligned_cols=68  Identities=12%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             CCcEEecCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEccCCC---CceEecCCcceeCCCCeEEEEEEe
Q 029067           86 RRRLRLDPSTKLFFPYE-PGKQVRSAISIKNTSKSHVAFKFQTTAP---KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        86 ~~~L~IdP~~eL~F~~e-~~k~v~s~L~LtN~S~~~VAFKVKTTaP---~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      ...+.+++. .|.|-.- .+...+..++|+|+++.++.|++.....   ..|.+.|..|.|+||++..|.|++
T Consensus         7 ~P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A            7 GPKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             CCSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred             CCEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence            356889995 8998653 3667889999999999999999964221   469999999999999999999999

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.80  E-value=0.00014  Score=57.06  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             CCcEEecCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEccC------CCCceEecCCcceeCCCCeEEEEEEee
Q 029067           86 RRRLRLDPSTKLFFPY-EPGKQVRSAISIKNTSKSHVAFKFQTT------APKSCYMRPPGGILAPGESLIATVFKF  155 (199)
Q Consensus        86 ~~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTT------aP~~Y~VRPn~GiL~Pgesi~I~Vtl~  155 (199)
                      ...+.|++. +|.|-. .++...+..|+|+|++.-++-|++.-.      .+.-+.|.|..|.|.||+++.|.|+++
T Consensus        24 ~P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~   99 (140)
T 3qbt_B           24 LPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY   99 (140)
T ss_dssp             SCCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred             CCceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence            456888885 999974 357788999999999999999998742      234588999999999999999999995

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.36  E-value=0.00082  Score=60.09  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             CCCcEEecCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEccCC------CCceEecCCcceeCCCCeEEEEEEeecC
Q 029067           85 TRRRLRLDPSTKLFFPY-EPGKQVRSAISIKNTSKSHVAFKFQTTA------PKSCYMRPPGGILAPGESLIATVFKFVE  157 (199)
Q Consensus        85 ~~~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P~~Y~VRPn~GiL~Pgesi~I~Vtl~~~  157 (199)
                      ....+.|++. +|.|-. .++...+.+|+|+|++.-++.|++.-..      +.-+.|.|..|.|.||+++.|.|++++.
T Consensus        26 ~~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~  104 (366)
T 3qis_A           26 FLPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS  104 (366)
T ss_dssp             --CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred             cCCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence            3457889995 999953 4678899999999999999999987432      2226799999999999999999999643

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.15  E-value=0.021  Score=47.18  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             cEEecCCCceEeeCCC-CCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEP-GKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~-~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      .|++++. .+.|.--. ++.....+.++|+++.++-++.-.. |....+++..+.|+||++..|.|++
T Consensus         2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~   67 (220)
T 2qsv_A            2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL   67 (220)
T ss_dssp             CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred             ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence            3899995 99997633 5566779999999999999987543 8888889999999999999999999

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.59  E-value=0.064  Score=44.17  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEE-EEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067           86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAF-KFQTTAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAF-KVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      ...|.++ . .+.|-.-.++..+..++|+|+++.++.+ +|+++. +...+.+..+.|.||++..|.|++
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence            4568898 5 8998743377888999999999999887 888764 688999999999999999999999

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=89.38  E-value=2.5  Score=36.03  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=46.6

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCC----------CCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTA----------PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa----------P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|+|. .+.|+.. .+  ..+|+|+|.++.++.-.+-..+          ..-|.|-|+.-.|+||+...|.|.+
T Consensus        29 ~v~i~~T-RvIy~~~-~k--~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~  101 (257)
T 3q48_A           29 GLIAQGT-RVVFPAS-ER--EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY  101 (257)
T ss_dssp             --CCSCS-EEEEETT-CS--EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             eEEEcce-EEEEeCC-Cc--EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE
Confidence            5888885 8888753 22  4799999999887655533211          1239999999999999999999988

>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B

Probab=85.82  E-value=6.6  Score=32.50  Aligned_cols=63  Identities=11%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccC-----CCCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTT-----APKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-----aP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|++. .+.|+... +  ..+|+|+|.++.++.--+..-     ...-|.|-|+.-.|+||+...|.|.+
T Consensus        13 ~v~i~~T-RvIy~~~~-k--~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   80 (221)
T 2co7_B           13 SVKLGAT-RVIYHAGT-A--GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   80 (221)
T ss_dssp             ECEESCS-EEEEETTS-S--CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEEEcce-EEEEcCCC-C--EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence            3678885 88887542 3  469999999988765544221     12359999999999999999999998

>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A

Probab=83.78  E-value=13  Score=30.66  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEccCC-------CCceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKTTa-------P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      |.|++. .+.|+... +  ..+|+|+|.++. ++.--+...+       ..-|.|-|+.-.|+||+...|.|.+
T Consensus         2 v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~   71 (218)
T 2xg5_A            2 VSLDRT-RAVFDGSE-K--SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (218)
T ss_dssp             EEESCS-EEEEETTS-S--EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             cEeCce-EEEEeCCC-C--EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence            567885 88887542 2  569999999987 7655543211       2249999999999999999999988

>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}

Probab=82.30  E-value=8.9  Score=32.28  Aligned_cols=63  Identities=13%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc-----CCCCceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT-----TAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT-----TaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|++. .+.|+... +  ..+|+|+|.++.++.--+-.     ....-|.|-|+.--|+||+...|.|.+
T Consensus        23 ~v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~   90 (239)
T 4djm_A           23 SLHLGAT-RVVYNPAS-S--GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR   90 (239)
T ss_dssp             CCEESCS-EEEECTTS-S--CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred             eEEEcce-EEEEeCCC-C--EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence            4778885 78887532 3  46999999988775443321     112249999999999999999999987

>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1

Probab=80.91  E-value=17  Score=29.61  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEccC-----CCCceEecCCcceeCCCCeEEEEEE-e
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSK-SHVAFKFQTT-----APKSCYMRPPGGILAPGESLIATVF-K  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~-~~VAFKVKTT-----aP~~Y~VRPn~GiL~Pgesi~I~Vt-l  154 (199)
                      |.|++. .+.|+... +  ..+|+|+|.++ .++.--+-..     ...-|.|-|+.-.|+||+...|.|. +
T Consensus         2 v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~   70 (206)
T 1l4i_A            2 VALGAT-RVIYPEGQ-K--QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA   70 (206)
T ss_dssp             EEESCS-EEEEETTC-S--EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred             eEeCce-EEEEeCCC-c--EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec
Confidence            567785 78887542 2  56999999986 6655544221     1234999999999999999999998 6

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=80.01  E-value=11  Score=34.33  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             CCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEe---------cCC-----cc-------ee
Q 029067           84 PTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM---------RPP-----GG-------IL  142 (199)
Q Consensus        84 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~V---------RPn-----~G-------iL  142 (199)
                      +....+.++-. .-.|.- +++..+-+|+++|.++++|-..==+|+.-+|.-         .|.     .|       =|
T Consensus       245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI  322 (382)
T 1yew_A          245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL  322 (382)
T ss_dssp             CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred             CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence            44667788775 677775 588999999999999999988855666666633         221     12       28


Q ss_pred             CCCCeEEEEEEee
Q 029067          143 APGESLIATVFKF  155 (199)
Q Consensus       143 ~Pgesi~I~Vtl~  155 (199)
                      .|||+.+|.|..+
T Consensus       323 ~PGETr~~~v~a~  335 (382)
T 1yew_A          323 APGETRTVDVTAS  335 (382)
T ss_dssp             CTTCEEEEEEEEE
T ss_pred             CCCceeEEEEEee
Confidence            9999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	9e-21
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	3e-17
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	1e-16
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	9e-16

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.9 bits (202), Expect = 9e-21
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 72  SSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPK 131
           SS  S      +     L + P+ +L+F      + ++ I + N +K+ VAFK +TTAP+
Sbjct: 2   SSGSSGKKPLSVFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPE 61

Query: 132 SCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPE 190
              ++P      PG S+   V                 ++ +F IM+ +++      P 
Sbjct: 62  KYRVKPSNSSCDPGASIDIIVSPHGGL--------TVSAQDRFLIMAAEMEQSSGTGPA 112

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.8 bits (176), Expect = 3e-17
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           + +DP T   +P   G    S  +I + S S +AFK +++  +   +RP  G +      
Sbjct: 4   INVDPPT-GNYPATGGN---STHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
              + +   PP+ +          K  I   +V  E       
Sbjct: 60  KLDINRLPGPPKED----------KIVIQYAEVPAEETDPMAP 92

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.2 bits (172), Expect = 1e-16
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           L  DP         P   V S   + N     + FK +++      + P  G + P  S 
Sbjct: 1   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
              + +    P+ +          K  +       +       
Sbjct: 57  DVVITRTAGAPKED----------KLVVHFASAPADATDAQAA 89

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.0 bits (166), Expect = 9e-16
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 89  LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
           ++  P TK+ F      +    I + N+S   + +  +TT  K   + PP G+L P E++
Sbjct: 7   IQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAV 66

Query: 149 IATVF--KFVEPPENNERPTDQKSKVKFKIMSLKVKGE 184
           +  V    F    E+        +  +  +        
Sbjct: 67  LLAVSCDAFAFGQED-------TNNDRITVEWTNTPDG 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.95
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.95
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.93
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.93
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	93.81
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	93.54
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	91.46
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	89.13
d3bwuc1	121	Periplasmic chaperone FimC {Escherichia coli [TaxI	88.31

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1e-27  Score=186.23  Aligned_cols=108  Identities=17%  Similarity=0.220  Sum_probs=93.0

Q ss_pred             CCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCC
Q 029067           84 PTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNE  163 (199)
Q Consensus        84 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e  163 (199)
                      |.+ .|.++|.++|+|.+++++.+++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+|   ++....
T Consensus         3 p~~-~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V~~---~~~~~~   78 (124)
T d1grwa_           3 PPG-DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSC---DAFAFG   78 (124)
T ss_dssp             CCC-CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CCCCGG
T ss_pred             CCC-ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEEEE---ecCCCC
Confidence            444 5999999999999999999999999999999999999999999999999999999999999999999   665333


Q ss_pred             CCCCCCCCceEEEEEEEeCCCC-CchhhhhcccCC
Q 029067          164 RPTDQKSKVKFKIMSLKVKGEM-DYVPELVCIASP  197 (199)
Q Consensus       164 ~p~~~k~kDKFLVqSv~v~~~~-d~~~elFk~a~P  197 (199)
                        ...+++|||+||++.++++. +...+.|+..+.
T Consensus        79 --~~~~~~dkF~v~~~~~p~~~~~~~~~~w~~~~~  111 (124)
T d1grwa_          79 --QEDTNNDRITVEWTNTPDGAAKQFRREWFQGDG  111 (124)
T ss_dssp             --GSCCTTCEEEEEEEECCSSCCSSCCGGGGTSSS
T ss_pred             --CcccCCceEEEEEEECCCccHHHHHHHHhccCC
Confidence              34689999999999998654 333566666543

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.7e-28  Score=192.21  Aligned_cols=104  Identities=22%  Similarity=0.320  Sum_probs=92.3

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCC
Q 029067           86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERP  165 (199)
Q Consensus        86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p  165 (199)
                      +.+|.|+|.++|+|.+++++++++.|+|+|.++++||||||||+|++|+|||+.|+|+||+++.|.|++   ++.     
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~---~~~-----   87 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGG-----   87 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSS-----
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEE---CCC-----
Confidence            668999999899999999999999999999999999999999999999999999999999999999999   443     


Q ss_pred             CCCCCCceEEEEEEEeCCCCC----chhhhhcccCC
Q 029067          166 TDQKSKVKFKIMSLKVKGEMD----YVPELVCIASP  197 (199)
Q Consensus       166 ~~~k~kDKFLVqSv~v~~~~d----~~~elFk~a~P  197 (199)
                      ....++|||+|+++.+++..+    .+.++|+...+
T Consensus        88 ~~~~~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~  123 (152)
T d1wica_          88 LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPR  123 (152)
T ss_dssp             SCCCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCT
T ss_pred             CcccCCCcEEEEEEEeCCCCCCCccCHHHHhhcCCc
Confidence            235789999999999976552    34789987654

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=3.7e-26  Score=173.97  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCC
Q 029067           87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPT  166 (199)
Q Consensus        87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~  166 (199)
                      .+|.|+|. +|.|+++++   .++++|+|.++.+||||||||+|++|+|+|++|+|+||+++.|.|++   +++      
T Consensus         2 ~~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I~~---~~~------   68 (109)
T d1m1sa_           2 SMINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG------   68 (109)
T ss_dssp             CSEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC------
T ss_pred             ceEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEEEe---CCC------
Confidence            37999996 999997754   57999999999999999999999999999999999999999999999   553      


Q ss_pred             CCCCCceEEEEEEEeCCCCCchhhhhcccCCC
Q 029067          167 DQKSKVKFKIMSLKVKGEMDYVPELVCIASPL  198 (199)
Q Consensus       167 ~~k~kDKFLVqSv~v~~~~d~~~elFk~a~P~  198 (199)
                       ..++|||+|+++.++++.++++++||...|.
T Consensus        69 -~~~~DKf~I~~~~~~~~~~d~~~~fk~~~~~   99 (109)
T d1m1sa_          69 -PPKEDKIVIQYAEVPAEETDPMAPFKAGAQQ   99 (109)
T ss_dssp             -CSCEEEEEEEEEEECTTCCCTTHHHHTTCCC
T ss_pred             -CCCCCEEEEEEEECCCCCcCHHHHHhcCCCC
Confidence             2479999999999999987789999988764

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=4.6e-26  Score=173.34  Aligned_cols=95  Identities=16%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCCC
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQ  168 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~~  168 (199)
                      |.+||. +|.|+...   ..+.|+|+|.++.+||||||||+|.+|+|+|+.|+|+||+++.|.|++   +|.       .
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I~~---~~~-------~   66 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A   66 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEEEe---CCC-------C
Confidence            689997 89998664   478999999999999999999999999999999999999999999999   553       2


Q ss_pred             CCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067          169 KSKVKFKIMSLKVKGEMDYVPELVCIASP  197 (199)
Q Consensus       169 k~kDKFLVqSv~v~~~~d~~~elFk~a~P  197 (199)
                      ..+|||+||++.++++.+++.++|+...|
T Consensus        67 ~~~DKf~I~~~~~~~~~~d~~~~fk~~~~   95 (107)
T d1rowa_          67 PKEDKLVVHFASAPADATDAQAAFVAVAP   95 (107)
T ss_dssp             CEEEEEEEEEEECCTTCSCHHHHHTTCCC
T ss_pred             CCCCEEEEEEEECCCCCcCHHHHhhcCCC
Confidence            47999999999999998888999998766

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.81  E-value=0.32  Score=35.29  Aligned_cols=62  Identities=11%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccC-----CCCceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTT-----APKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-----aP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      |.|+.. .+.|... .  -...|+|+|.++.++-..+...     ...-|.|-|+.-.|+||+...|.|..
T Consensus         7 v~l~~T-Rvi~~~~-~--~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI~~   73 (128)
T d2co7b1           7 VKLGAT-RVIYHAG-T--AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR   73 (128)
T ss_dssp             CEESCS-EEEEETT-S--SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred             EEECCe-EEEEcCC-C--CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEEEe
Confidence            677885 8888642 2  3578999999998776665322     23359999999999999999999997

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=93.54  E-value=0.48  Score=35.02  Aligned_cols=63  Identities=16%  Similarity=0.238  Sum_probs=49.2

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCC-------CceEecCCcceeCCCCeEEEEEEe
Q 029067           88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAP-------KSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP-------~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      -|.|+.. .+.|... .+  ...|+|+|.++.++...+.....       .-|.|-|+...|+||+...|.|..
T Consensus         7 Gv~l~~T-RvIy~~~-~~--~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI~~   76 (141)
T d1p5va1           7 GVTIGES-RIIYPLD-AA--GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ   76 (141)
T ss_dssp             EEEESCS-EEEEETT-CS--CEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEEEE
T ss_pred             eeEeCcc-EEEEcCC-Cc--EEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEEEe
Confidence            3678885 7888753 22  46899999999988888755432       239999999999999999999987

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=1.3  Score=31.80  Aligned_cols=62  Identities=18%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEccC--C-----CCceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFKFQTT--A-----PKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKTT--a-----P~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      +.|+.. .+.|... .  -...++|+|.+++ ++--.....  .     ..-|.|-|+.-.|+||+...|.|.+
T Consensus         2 i~l~~T-RvI~~~~-~--~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI~~   71 (124)
T d2j2za1           2 VSLDRT-RAVFDGS-E--KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST   71 (124)
T ss_dssp             EEESCS-EEEEETT-S--SEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred             eEeCCc-EEEEeCC-C--CEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEEEE
Confidence            566774 7778742 2  3578999998875 443332221  1     2239999999999999999999998

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=89.13  E-value=0.52  Score=33.09  Aligned_cols=55  Identities=25%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             CCCCCeeEEEEEEEcCCCCeEE-EEEccCCCCceEecCCcceeCCCCeEEEEEEee
Q 029067          101 YEPGKQVRSAISIKNTSKSHVA-FKFQTTAPKSCYMRPPGGILAPGESLIATVFKF  155 (199)
Q Consensus       101 ~e~~k~v~s~L~LtN~S~~~VA-FKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~  155 (199)
                      .++|+.+...++|+|.....+. .++--..|.-+.+.|..--|+||++..+++.+.
T Consensus        13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~~Vt   68 (103)
T d1w8oa1          13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQVTIT   68 (103)
T ss_dssp             ECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEEEEE
T ss_pred             eCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEEEEE
Confidence            3468888999999999887543 456667899999999888899999999999883

>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone FimC
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=3.1  Score=29.45  Aligned_cols=62  Identities=10%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEE-----ccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067           89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFKF-----QTTAPKSCYMRPPGGILAPGESLIATVFK  154 (199)
Q Consensus        89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKV-----KTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl  154 (199)
                      +.|+.. .+.|...   +-...++|+|.+++ ++.-..     ..+....|.|-|+.--|+||+...|.|.+
T Consensus         2 i~l~~T-RvI~~~~---~~~~~~~i~N~~~~~~~lvq~wv~~~d~~~~~~fivtPPl~rl~p~~~q~vRI~~   69 (121)
T d3bwuc1           2 VALGAT-RVIYPAG---QKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD   69 (121)
T ss_dssp             EEESCS-EEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCCCSSEEEESSEEEEESSEEEEEEEEE
T ss_pred             eeECce-EEEEcCC---CceEEEEEEECCCCccEEEEEEEEcCCCCcCCCeeECCCcEEeCCCCeeEEEEEe
Confidence            456664 7777642   23579999998765 433221     22444569999999999999999999987