Citrus Sinensis ID: 029072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHcccccccccccccHHHHcccccccccccccccccccEEEEEEccccccHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEccccccccccccccccccccccEEEEEccccccHHHccccccccEccccccHHHHccccccccccHHHHHHHccccccccccccccccccccEEEEEcccccccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEcccccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msvststtegnqassgddkypipltsyintissssstssrsgstssiMSEIEeeeeeeenynssrsnsSQLLSeindgngmpmplapikeeiessffsfdvangngtqeeDIIYVAVGKSQSSMDALSWTLrhavnpstLIFLIHVfpqvkfvpsplgklprnqvnpeQLETFMAQETGKRRQLLQKFLDTcsqskvld
Flexible Loop (DISEMBL)
msvststtegnqassgddkypiPLTSYIntissssstssrsgstsSIMSEIEEEEEeeenynssrsnsSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKfldtcsqskvld
Low Complexity Region (SEG)
MSVSTSTTEGNQASSGDDKYPIPLtsyintissssstssrsgstssimseieeeeeeeenynssrsnssQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVLD
Disordered region (IsUnstruct)
**********************************************************************************************SFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPS********************************************
Disordered Region (DISOPRED)
********************PIPLTSYINT**********************************************************************************IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE***********QLLQKFLDTCSQSKVL*
Disordered Region (DISEMBL)
***************GDDKYPIPLTSYINTI***************************************LLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT********
Disordered Region (DISPRO)
*****************DKYPIPLTSYINTIS***********************************SSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9FGD7	765	Putative U-box domain-con	no	no	0.507	0.132	0.298	5e-05

>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 93  ESSFFSFDVANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVK 151
           E+     +V   +G++ E + Y+AVG   Q     + W L+   N    I L+H+    +
Sbjct: 3   ETKTHELEVEAESGSRMEKV-YIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQ 61

Query: 152 -FVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194
            FV +P GKLP + V+ E+L+     E  K  +LL K++  C +
Sbjct: 62  DFVYTPFGKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGK 105

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
224089553	289	predicted protein [Populus trichocarpa]	0.648	0.446	0.541	1e-36
225467979	275	PREDICTED: U-box domain-containing prote	0.587	0.425	0.555	9e-34
255579152	264	ATP binding protein, putative [Ricinus c	0.668	0.503	0.543	9e-34
296083524	223	unnamed protein product [Vitis vinifera]	0.542	0.484	0.584	2e-33
356522087	295	PREDICTED: U-box domain-containing prote	0.633	0.427	0.515	2e-30
356555775	246	PREDICTED: U-box domain-containing prote	0.452	0.365	0.608	2e-28
388491918	254	unknown [Lotus japonicus]	0.427	0.334	0.609	4e-26
351728033	246	uncharacterized protein LOC100527773 [Gl	0.447	0.361	0.623	7e-26
356532376	449	PREDICTED: uncharacterized protein LOC10	0.427	0.189	0.609	1e-25
357118110	278	PREDICTED: U-box domain-containing prote	0.477	0.341	0.526	1e-24

>gi|224089553|ref|XP_002308753.1| predicted protein [Populus trichocarpa] gi|222854729|gb|EEE92276.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 107/144 (74%), Gaps = 15/144 (10%)

Query: 55  EEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIY 114
           E EEE Y+S        L EIN G    +PL  IKE+IE S FSFDV    G  ++D +Y
Sbjct: 44  EIEEEKYSSD-------LFEINHG----VPLESIKEDIEGSVFSFDVY---GEHQKDCVY 89

Query: 115 VAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETF 173
           V VGKS+SSMDALSWTL++A+ + +T++FLIH+FP++ ++PSPLG+LP++QV+ +Q+E +
Sbjct: 90  VGVGKSESSMDALSWTLKNAIIDSNTMVFLIHIFPEIHYIPSPLGRLPKSQVSAQQVENY 149

Query: 174 MAQETGKRRQLLQKFLDTCSQSKV 197
           MAQE  KRR+LLQKF++ CS SKV
Sbjct: 150 MAQERDKRRELLQKFINMCSASKV 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467979|ref|XP_002269050.1| PREDICTED: U-box domain-containing protein 33 [Vitis vinifera]

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 93/126 (73%), Gaps = 9/126 (7%)

Query: 72  LSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTL 131
           L EI+ G    + +A ++E+   S FS DV        ED +YVAVGK +SS DAL+WTL
Sbjct: 44  LFEISHG----VRMASLREDFGESLFSLDVG-----YREDNVYVAVGKCESSTDALAWTL 94

Query: 132 RHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191
           +HAV PST+++L+HVFP+++ V +PLGKLP++Q NP QLE+ MAQE GKRR+LLQKFLD 
Sbjct: 95  KHAVTPSTIVYLVHVFPEIRHVATPLGKLPKSQANPLQLESHMAQERGKRRELLQKFLDM 154

Query: 192 CSQSKV 197
           CS S+V
Sbjct: 155 CSSSQV 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579152|ref|XP_002530423.1| ATP binding protein, putative [Ricinus communis] gi|223530031|gb|EEF31954.1| ATP binding protein, putative [Ricinus communis]

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 18/151 (11%)

Query: 49  SEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIES-SFFSFDVANGNGT 107
           SEIEEE            NSS  L EI+  +G+PM     +E+ E  S FS DV +  G 
Sbjct: 42  SEIEEE------------NSSYELFEISH-DGVPMETIQ-EEQFEGISMFSLDVHSRGGG 87

Query: 108 QEEDIIYVAVGKSQSSMDALSWTLRHAVN-PSTLIFLIHVFPQVKFVPSPLGKLPRNQVN 166
             ED +YVAVGKS+SSMDA+SWTL++ VN  ST+++LIH++P++  +PSPLGKLP+NQV+
Sbjct: 88  --EDCVYVAVGKSESSMDAVSWTLKNLVNNDSTVVYLIHIYPEIHHIPSPLGKLPKNQVS 145

Query: 167 PEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197
           PEQ+E +MAQE GKRR+LLQKF+  CS SKV
Sbjct: 146 PEQVEIYMAQERGKRRELLQKFIRICSASKV 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083524|emb|CBI23514.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 87/113 (76%), Gaps = 5/113 (4%)

Query: 85  LAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144
           +A ++E+   S FS DV        ED +YVAVGK +SS DAL+WTL+HAV PST+++L+
Sbjct: 1   MASLREDFGESLFSLDVG-----YREDNVYVAVGKCESSTDALAWTLKHAVTPSTIVYLV 55

Query: 145 HVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197
           HVFP+++ V +PLGKLP++Q NP QLE+ MAQE GKRR+LLQKFLD CS S+V
Sbjct: 56  HVFPEIRHVATPLGKLPKSQANPLQLESHMAQERGKRRELLQKFLDMCSSSQV 108

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522087|ref|XP_003529681.1| PREDICTED: U-box domain-containing protein 33-like [Glycine max]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 88/130 (67%), Gaps = 4/130 (3%)

Query: 72  LSEINDGNGMPMPLAPIKEEIE-SSFFSFDV--ANGNGTQEEDIIYVAVGK-SQSSMDAL 127
           L EIN     P+ L  I+E+ E S+ FS D+   +G    ++D++YVAVGK   SSM+AL
Sbjct: 43  LFEINLKEKEPLALDAIREDCEISTVFSLDIDIHDGGSGNDDDVVYVAVGKDGDSSMEAL 102

Query: 128 SWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187
           SW L+HAV PS  + ++HVFPQVK +PSPLGK+PR+ VN E +   + QE GKR+ LLQK
Sbjct: 103 SWALKHAVTPSATVCIVHVFPQVKLIPSPLGKIPRSHVNLEYVNMHLTQEKGKRKLLLQK 162

Query: 188 FLDTCSQSKV 197
           F D C  SKV
Sbjct: 163 FTDLCVDSKV 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555775|ref|XP_003546205.1| PREDICTED: U-box domain-containing protein 35-like [Glycine max]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 78/92 (84%), Gaps = 2/92 (2%)

Query: 108 QEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL--GKLPRNQV 165
           ++ED +YVAVGKSQSSM+AL+WTL +   PST+++LIH+FP++K +P+PL  G +P++QV
Sbjct: 46  EDEDTVYVAVGKSQSSMEALAWTLNNLATPSTMLYLIHIFPEIKLLPNPLGVGMIPKDQV 105

Query: 166 NPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197
           +PEQ+E++MAQE GKRR+LL KFL  CS SKV
Sbjct: 106 SPEQVESYMAQERGKRRELLNKFLQLCSASKV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491918|gb|AFK34025.1| unknown [Lotus japonicus]

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 73/87 (83%), Gaps = 2/87 (2%)

Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL--GKLPRNQVNPEQL 170
           +YVAVGKSQ+SM+ALSWTL + V PST ++L+HVFP++K +P+PL  G +P++QV+ EQ+
Sbjct: 67  VYVAVGKSQTSMEALSWTLNNLVTPSTTLYLVHVFPEIKHIPNPLGVGMVPKDQVSTEQV 126

Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKV 197
           E++MAQE GKRR+LL KF+  CS SKV
Sbjct: 127 ESYMAQERGKRRELLHKFIQLCSASKV 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728033|ref|NP_001237181.1| uncharacterized protein LOC100527773 [Glycine max] gi|255633178|gb|ACU16945.1| unknown [Glycine max]

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 75/93 (80%), Gaps = 4/93 (4%)

Query: 109 EEDIIYVAVGKSQSSMDALSWTLRHAV--NPSTLIFLIHVFPQVKFVPSPLG--KLPRNQ 164
           EE  +YVAVGKS +SMDALSW L + V  +PST+I+LIHVFPQ+  +P+PLG   +PRNQ
Sbjct: 36  EEYCVYVAVGKSDTSMDALSWALNNFVAQSPSTIIYLIHVFPQINHIPNPLGIGMIPRNQ 95

Query: 165 VNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197
           V+ EQ+E+++ QE GKRR+LLQKFL +CS SKV
Sbjct: 96  VSAEQVESYIDQERGKRRELLQKFLQSCSTSKV 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532376|ref|XP_003534749.1| PREDICTED: uncharacterized protein LOC100777008 [Glycine max]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL--GKLPRNQVNPEQL 170
           +YVAVGKSQSS +AL+WTL +   PST++F+IHVFP++K +P+PL  G +P++QV+PEQ+
Sbjct: 52  VYVAVGKSQSSTEALAWTLNNLATPSTMLFIIHVFPEIKLLPNPLGVGMIPKDQVSPEQV 111

Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKV 197
           E++MAQE G RR+LL KFL  CS SKV
Sbjct: 112 ESYMAQERGNRRELLNKFLQLCSASKV 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357118110|ref|XP_003560801.1| PREDICTED: U-box domain-containing protein 35-like [Brachypodium distachyon]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 65/95 (68%)

Query: 103 NGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPR 162
           N  G    + +YVAVGK  SSM ALSW LRH   P + ++L+HVFP V  +P+PLG +P+
Sbjct: 52  NPQGAPAAEDVYVAVGKGGSSMAALSWALRHLARPRSFVYLVHVFPVVASIPTPLGMMPK 111

Query: 163 NQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKV 197
            Q  PEQ+ET+M QE  KRR++LQKFLD C   +V
Sbjct: 112 RQATPEQVETYMNQERSKRREMLQKFLDQCRNFQV 146

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060048 hypothetical protein (289 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
cd01989	146	cd01989, STK_N, The N-terminal domain of Eukaryoti	2e-10
cd00293	130	cd00293, USP_Like, Usp: Universal stress protein f	1e-04

>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
            + VAV K + S +AL W L +       I L+HV P +  +PS  GKL       ++ +
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEED 60

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKV 197
                   + ++LL  +   CS+  V
Sbjct: 61  K-------EAKELLLPYRCFCSRKGV 79

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146

>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLET 172
           I VAV  S+ S  AL W  R A      + L+HV        + L +L   +     LE 
Sbjct: 2   ILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEAR-ALLEA 60

Query: 173 FMAQE 177
                
Sbjct: 61  LREAL 65

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	99.1
PRK09982	142	universal stress protein UspD; Provisional	98.25
PRK15456	142	universal stress protein UspG; Provisional	98.21
cd01987	124	USP_OKCHK USP domain is located between the N-term	98.13
PRK15005	144	universal stress protein F; Provisional	98.12
PRK15118	144	universal stress global response regulator UspA; P	98.05
cd00293	130	USP_Like Usp: Universal stress protein family. The	98.05
PF00582	140	Usp: Universal stress protein family; InterPro: IP	97.91
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	97.85
PRK10116	142	universal stress protein UspC; Provisional	97.71
PRK11175	305	universal stress protein UspE; Provisional	97.55
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	97.37
PRK11175	305	universal stress protein UspE; Provisional	96.08
COG0589	154	UspA Universal stress protein UspA and related nuc	95.61
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	88.21
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	82.33
PRK10490	895	sensor protein KdpD; Provisional	82.3

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=99.10  E-value=8.5e-10  Score=84.96  Aligned_cols=79  Identities=30%  Similarity=0.510  Sum_probs=61.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (199)
Q Consensus       112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i  191 (199)
                      +|+||||+|+.|++||+||++.....+..|+||||.++....+...+       .......+..+.+++++++|+++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999988777899999999876533322211       11344556677788899999999999


Q ss_pred             hhhCCC
Q 029072          192 CSQSKV  197 (199)
Q Consensus       192 C~~kkV  197 (199)
                      |.+.++
T Consensus        74 ~~~~~~   79 (146)
T cd01989          74 CSRKGV   79 (146)
T ss_pred             HhhcCC
Confidence            976654

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PRK09982 universal stress protein UspD; Provisional

Probab=98.25  E-value=4.8e-06  Score=65.06  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=36.1

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ++|+||||+|+.|++||+||++-....+.+|+|+||.++.
T Consensus         4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~   43 (142)
T PRK09982          4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGL   43 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCc
Confidence            5899999999999999999998776678899999998764

>PRK15456 universal stress protein UspG; Provisional

Probab=98.21  E-value=8.7e-06  Score=62.91  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CEEEEEeCCC--cchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKS--QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (199)
Q Consensus       111 rkV~VAVD~S--e~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky  188 (199)
                      ++|+||||+|  +.|++||+||++ |.+....|+|+||.++.....  ...  .    ......+.+..++..++.|+++
T Consensus         3 ~~ILv~vD~S~~~~s~~al~~A~~-la~~~~~l~llhv~~~~~~~~--~~~--~----~~~~~~~~~~~~~~~~~~l~~~   73 (142)
T PRK15456          3 KTIIMPVDVFEMELSDKAVRHAEF-LAQDDGVIHLLHVLPGSASLS--LHR--F----AADVRRFEEHLQHEAEERLQTM   73 (142)
T ss_pred             ccEEEeccCCchhHHHHHHHHHHH-HHhcCCeEEEEEEecCccccc--ccc--c----ccchhhHHHHHHHHHHHHHHHH
Confidence            5899999998  489999999996 444356899999997652111  000  0    0122335555666677777777


Q ss_pred             HHHhh
Q 029072          189 LDTCS  193 (199)
Q Consensus       189 ~~iC~  193 (199)
                      ...+.
T Consensus        74 ~~~~~   78 (142)
T PRK15456         74 VSHFT   78 (142)
T ss_pred             HHHhC
Confidence            66553

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=98.13  E-value=5.8e-06  Score=61.90  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=34.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      +|+||||+++.+++||+||++.....+..|.||||.++.
T Consensus         1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~   39 (124)
T cd01987           1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPR   39 (124)
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCc
Confidence            589999999999999999997665667899999998753

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK15005 universal stress protein F; Provisional

Probab=98.12  E-value=2e-05  Score=60.26  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             CEEEEEeCCCcc--hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          111 DIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       111 rkV~VAVD~Se~--Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ++|+||||+|+.  +++||+||++-..+.+..|+|+||.++.
T Consensus         3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~   44 (144)
T PRK15005          3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL   44 (144)
T ss_pred             ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccC
Confidence            589999999998  5899999999776778899999998764

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=98.05  E-value=1.7e-05  Score=61.20  Aligned_cols=40  Identities=25%  Similarity=0.108  Sum_probs=34.7

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ  149 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp  149 (199)
                      .++|+||||+|+.|++||+||++-....+..|.|+||.++
T Consensus         3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~   42 (144)
T PRK15118          3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVN   42 (144)
T ss_pred             ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccC
Confidence            3689999999999999999999976556789999999543

>cd00293 USP_Like Usp: Universal stress protein family

Probab=98.05  E-value=3.9e-05  Score=55.46  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (199)
Q Consensus       112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i  191 (199)
                      +|+||+|.++.++.+++||++-....+..|.++||.++....+            .    .+......+.++.|++|...
T Consensus         1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~------------~----~~~~~~~~~~~~~l~~~~~~   64 (130)
T cd00293           1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA------------A----ELAELLEEEARALLEALREA   64 (130)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc------------h----hHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999887788999999987542111            0    34455667778888888888


Q ss_pred             hhhCCC
Q 029072          192 CSQSKV  197 (199)
Q Consensus       192 C~~kkV  197 (199)
                      |...++
T Consensus        65 ~~~~~~   70 (130)
T cd00293          65 LAEAGV   70 (130)
T ss_pred             HhcCCC
Confidence            865544

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=97.91  E-value=1.1e-05  Score=58.62  Aligned_cols=40  Identities=35%  Similarity=0.429  Sum_probs=36.9

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ++|+||+|+++.++.||+||++.....+..|.++||.++.
T Consensus         3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~   42 (140)
T PF00582_consen    3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPP   42 (140)
T ss_dssp             SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccc
Confidence            6999999999999999999999777778999999999875

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=97.85  E-value=0.00012  Score=54.51  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=48.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (199)
Q Consensus       112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i  191 (199)
                      +|+|+||+++.++.||+||..-....+..|+|+||.++.....       .     .    ......+..+++++.+.+.
T Consensus         1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~-------~-----~----~~~~~~~~~~~~~~~~~~~   64 (132)
T cd01988           1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS-------P-----S----QLEVNVQRARKLLRQAERI   64 (132)
T ss_pred             CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC-------c-----c----hhHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999887766678999999987642111       0     0    1112334556677777666


Q ss_pred             hhhCC
Q 029072          192 CSQSK  196 (199)
Q Consensus       192 C~~kk  196 (199)
                      +++.+
T Consensus        65 ~~~~g   69 (132)
T cd01988          65 AASLG   69 (132)
T ss_pred             hhhcC
Confidence            65544

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK10116 universal stress protein UspC; Provisional

Probab=97.71  E-value=0.00024  Score=54.28  Aligned_cols=71  Identities=20%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL  189 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~  189 (199)
                      .++|+||+|.+..+.+||++|++-..+-+.+|.|+||.++.....   +      ......+.+.+..+++.++.|+++.
T Consensus         3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~l~~~~   73 (142)
T PRK10116          3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN---Q------FAAPMLEDLRSVMQEETQSFLDKLI   73 (142)
T ss_pred             CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch---h------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999886655577999999986542111   1      1122334455555556666666553

>PRK11175 universal stress protein UspE; Provisional

Probab=97.55  E-value=0.00047  Score=59.27  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=50.1

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD  190 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~  190 (199)
                      ++|+|++|+|+.+.+||+||+.-..+.+..|+|+||.++... +.+ +.+     ........+++..++.++.|+++..
T Consensus         4 ~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~   76 (305)
T PRK11175          4 QNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EMT-TLL-----SPDEREAMRQGVISQRTAWIREQAK   76 (305)
T ss_pred             ceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hhh-ccc-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999966556678999999765321 111 111     1122222333334445666777666


Q ss_pred             HhhhCC
Q 029072          191 TCSQSK  196 (199)
Q Consensus       191 iC~~kk  196 (199)
                      .|+..+
T Consensus        77 ~~~~~~   82 (305)
T PRK11175         77 PYLDAG   82 (305)
T ss_pred             HHhhcC
Confidence            665544

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=97.37  E-value=0.00095  Score=61.62  Aligned_cols=41  Identities=12%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCC--CCeEEEEEecCCC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQV  150 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~--gd~LVLVHV~pp~  150 (199)
                      .+||+||||+|+.|++||+.|++-....  +.+|.||||.++.
T Consensus         5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~   47 (357)
T PRK12652          5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGR   47 (357)
T ss_pred             cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCc
Confidence            5799999999999999999999977553  5799999998753

>PRK11175 universal stress protein UspE; Provisional

Probab=96.08  E-value=0.035  Score=47.71  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             CCCEEEEEeCCCcch-------HHHHHHHHHhccCC-CCeEEEEEecCCC
Q 029072          109 EEDIIYVAVGKSQSS-------MDALSWTLRHAVNP-STLIFLIHVFPQV  150 (199)
Q Consensus       109 ~erkV~VAVD~Se~S-------k~ALkWALdNLv~~-gd~LVLVHV~pp~  150 (199)
                      ..++|+||+|+++.+       ..||++|++-...- +..|.|+||.+..
T Consensus       151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~  200 (305)
T PRK11175        151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVT  200 (305)
T ss_pred             CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCc
Confidence            357999999997653       68999998755433 6789999998654

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=95.61  E-value=0.18  Score=37.71  Aligned_cols=41  Identities=24%  Similarity=0.213  Sum_probs=36.3

Q ss_pred             CCEEEEEeC-CCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          110 EDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       110 erkV~VAVD-~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      .++|++++| +++.++.|+.||++.....+..+.++||.+..
T Consensus         5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~   46 (154)
T COG0589           5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPL   46 (154)
T ss_pred             cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccc
Confidence            469999999 99999999999999887777788899998765

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=88.21  E-value=0.76  Score=32.55  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=27.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072          113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF  147 (199)
Q Consensus       113 V~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~  147 (199)
                      |+|+++++..|..+|.||.+.- +.+..++++|+.
T Consensus         1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~   34 (86)
T cd01984           1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV   34 (86)
T ss_pred             CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence            5799999999999999998864 345577777775

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=82.33  E-value=2.9  Score=34.09  Aligned_cols=38  Identities=29%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhcc-CCCCeEEEEEecCCC
Q 029072          112 IIYVAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQV  150 (199)
Q Consensus       112 kV~VAVD~Se~Sk~ALkWALdNLv-~~gd~LVLVHV~pp~  150 (199)
                      ||+|||-|++.|+ ||.+.|..+. ..+..|.++||....
T Consensus         1 ki~va~SGG~DS~-~Ll~~l~~~~~~~~~~~~~~~vdh~~   39 (182)
T PF01171_consen    1 KILVAVSGGKDSM-ALLHLLKELRRRNGIKLIAVHVDHGL   39 (182)
T ss_dssp             EEEEE--SSHHHH-HHHHHHHHHHTTTTTEEEEEEEE-ST
T ss_pred             CEEEEEcCCHHHH-HHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            6999999999998 5556666665 345699999998654

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>PRK10490 sensor protein KdpD; Provisional

Probab=82.30  E-value=2.3  Score=43.47  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ  149 (199)
Q Consensus       109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp  149 (199)
                      ...+|+|||++++++.+++++|.+--.+-+..+++|||..+
T Consensus       249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~  289 (895)
T PRK10490        249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETP  289 (895)
T ss_pred             cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence            45789999999999999999998876666779999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 52/186 (27%)

Query: 47  IMSEIEEE----EEEEENYNSSRS---NSSQLLSEINDGNGMPMPLAPIKEEIESSFFSF 99
           +MS I+ E          Y   R    N +Q+ ++ N      +       ++  +    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRLQPYLKLRQALLEL 147

Query: 100 DVANGNGTQEEDIIYVAV------GKS------------QSSMD-ALSW-TLRHAVNPST 139
             A            V +      GK+            Q  MD  + W  L++  +P T
Sbjct: 148 RPAK----------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 140 LI-----FLIHVFPQVKFVPSPLGKLPRNQVN-PEQLETFMAQETGKRRQLLQKFLDTCS 193
           ++      L  + P           +     +   +L   +  +  +   LL   L    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLL--VLLNVQ 254

Query: 194 QSKVLD 199
            +K  +
Sbjct: 255 NAKAWN 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 54/195 (27%)

Query: 10  GNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSS 69
            N  S   +     L   +  I  + +  SRS  +S+I   I   + E      S+   +
Sbjct: 190 KNCNS--PETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 70  QL--LSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNG------TQEEDIIYVAVGKSQ 121
            L  L  + +            +       +F++           T+ + +       + 
Sbjct: 246 CLLVLLNVQN-----------AKAWN----AFNL----SCKILLTTRFKQVTDFLSAATT 286

Query: 122 S--SMDALSWTLRHAVNPSTL-IFLIHVFPQVKFVPSPLGKLPR--NQVNPEQLETFMAQ 176
           +  S+D  S TL          + L       K++      LPR     NP +L      
Sbjct: 287 THISLDHHSMTLTP---DEVKSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAE- 335

Query: 177 ETGKRRQLLQKFLDT 191
                   ++  L T
Sbjct: 336 -------SIRDGLAT 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	98.65
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	98.62
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	98.6
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	98.58
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	98.42
3fg9_A	156	Protein of universal stress protein USPA family; A	98.41
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	98.36
3fdx_A	143	Putative filament protein / universal stress PROT;	98.31
3tnj_A	150	Universal stress protein (USP); structural genomic	98.3
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.19
3dlo_A	155	Universal stress protein; unknown function, struct	98.11
3loq_A	294	Universal stress protein; structural genomics, PSI	98.1
3olq_A	319	Universal stress protein E; structural genomics, P	98.04
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	97.99
2z08_A	137	Universal stress protein family; uncharacterized c	97.98
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	97.97
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	97.93
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	97.74
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	97.4
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	97.27
3olq_A	319	Universal stress protein E; structural genomics, P	97.19
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	97.17
3loq_A	294	Universal stress protein; structural genomics, PSI	96.98
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	96.9

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=98.65  E-value=7.2e-08  Score=71.80  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=61.4

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL  189 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~  189 (199)
                      .++|+||||+|+.|.+||+||++-..+.+..|.|+||.++......  +       .......+.++.++.+++.|+++.
T Consensus         5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~~   75 (146)
T 3s3t_A            5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQRQ   75 (146)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999877666889999999876522110  0       011444566778888999999999


Q ss_pred             HHhhhCCC
Q 029072          190 DTCSQSKV  197 (199)
Q Consensus       190 ~iC~~kkV  197 (199)
                      ..|.+.++
T Consensus        76 ~~~~~~g~   83 (146)
T 3s3t_A           76 QFVATTSA   83 (146)
T ss_dssp             HHHTTSSC
T ss_pred             HHHHhcCC
Confidence            99987765

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=98.62  E-value=1.5e-07  Score=69.62  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhc-cCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHA-VNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQET-GKRRQLLQKF  188 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNL-v~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer-~eakeLLdky  188 (199)
                      ++|+||+|+|+.|.+||+||++.. .+.+..|.|+||.++......          .......+.+..+ +++++.|+++
T Consensus         2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~   71 (138)
T 3idf_A            2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE----------AVLAAYDEIEMKEEEKAKLLTQKF   71 (138)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc----------cccCcHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999998 778899999999876521110          0011223445555 8888999999


Q ss_pred             HHHhhhCCC
Q 029072          189 LDTCSQSKV  197 (199)
Q Consensus       189 ~~iC~~kkV  197 (199)
                      ...|.+.++
T Consensus        72 ~~~~~~~g~   80 (138)
T 3idf_A           72 STFFTEKGI   80 (138)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHCCC
Confidence            999987665

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=98.60  E-value=2.5e-07  Score=70.30  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=58.8

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC-----CccCCCCCC--C-CCCCCChHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV-----KFVPSPLGK--L-PRNQVNPEQLETFMAQETGKR  181 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~-----~~Iptp~G~--i-P~s~~~~e~vea~~~qer~ea  181 (199)
                      .++|+||||+|+.|.+||+||++...+.+..|.|+||.++.     .........  + |.   ..+.+..+..+.++++
T Consensus         5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   81 (162)
T 1mjh_A            5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEEA   81 (162)
T ss_dssp             CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHHH
Confidence            46999999999999999999998776678899999998753     111100000  1 11   1112445667777888


Q ss_pred             HHHHHHHHHHhhhCCC
Q 029072          182 RQLLQKFLDTCSQSKV  197 (199)
Q Consensus       182 keLLdky~~iC~~kkV  197 (199)
                      ++.|+++.+.|...++
T Consensus        82 ~~~l~~~~~~~~~~g~   97 (162)
T 1mjh_A           82 KNKMENIKKELEDVGF   97 (162)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999998877664

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=98.58  E-value=1.5e-08  Score=75.36  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=57.4

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD  190 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~  190 (199)
                      ++|+||||+|+.|.+||+||++...+.+..|.|+||.++........+..+.     .....+.+..++.+++.|+++.+
T Consensus         3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~   77 (147)
T 3hgm_A            3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARP-----EQLDIPDDALKDYATEIAVQAKT   77 (147)
T ss_dssp             SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCC-----GGGCCCTTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccCh-----hhhhhHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999776668899999999865311111111111     11112344566778888888888


Q ss_pred             HhhhCCC
Q 029072          191 TCSQSKV  197 (199)
Q Consensus       191 iC~~kkV  197 (199)
                      .|.+.++
T Consensus        78 ~~~~~g~   84 (147)
T 3hgm_A           78 RATELGV   84 (147)
T ss_dssp             HHHHTTC
T ss_pred             HHHhcCC
Confidence            8887765

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=98.42  E-value=6.6e-07  Score=69.17  Aligned_cols=85  Identities=26%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             CCEEEEEeCCCc---------chHHHHHHHHHhccC---CCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQ---------SSMDALSWTLRHAVN---PSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQE  177 (199)
Q Consensus       110 erkV~VAVD~Se---------~Sk~ALkWALdNLv~---~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qe  177 (199)
                      .++|+||||+|+         .|++||+||++.+.+   .+..|+||||.++........+.  . ...++.+..+.++.
T Consensus         5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~   81 (175)
T 2gm3_A            5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDS--I-YASPEDFRDMRQSN   81 (175)
T ss_dssp             CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------C--C-CCSHHHHHHHTTSH
T ss_pred             ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccccccc--c-cCCHHHHHHHHHHH
Confidence            479999999999         999999999998854   36799999998643110000000  0 11234444555556


Q ss_pred             HHHHHHHHHHHHHHhhhCCC
Q 029072          178 TGKRRQLLQKFLDTCSQSKV  197 (199)
Q Consensus       178 r~eakeLLdky~~iC~~kkV  197 (199)
                      +++.+++|+++...|...++
T Consensus        82 ~~~~~~~l~~~~~~~~~~g~  101 (175)
T 2gm3_A           82 KAKGLHLLEFFVNKCHEIGV  101 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHCCC
Confidence            66778888888888766554

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=98.41  E-value=6.7e-07  Score=67.72  Aligned_cols=77  Identities=12%  Similarity=0.113  Sum_probs=57.2

Q ss_pred             CCEEEEEeC--CCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVG--KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK  187 (199)
Q Consensus       110 erkV~VAVD--~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdk  187 (199)
                      -++|+||||  +|+.|.+||+||++-..+.+..|.|+||.++.... .. +.     . .   ..+..+.++++++.|++
T Consensus        15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~-~~-----~-~---~~~~~~~~~~~~~~l~~   83 (156)
T 3fg9_A           15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDIN-IF-DS-----L-T---PSKIQAKRKHVEDVVAE   83 (156)
T ss_dssp             CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTT-CC-CS-----S-H---HHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcc-cc-cc-----C-C---HHHHHHHHHHHHHHHHH
Confidence            479999999  99999999999998776567899999998765321 11 11     1 1   23556677788889999


Q ss_pred             HHHHhhhCCC
Q 029072          188 FLDTCSQSKV  197 (199)
Q Consensus       188 y~~iC~~kkV  197 (199)
                      +.+.+.+.++
T Consensus        84 ~~~~~~~~g~   93 (156)
T 3fg9_A           84 YVQLAEQRGV   93 (156)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHcCC
Confidence            9888877665

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=98.36  E-value=1.6e-06  Score=66.57  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=54.6

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNP-EQLETFMAQETGKRRQLLQKF  188 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~-e~vea~~~qer~eakeLLdky  188 (199)
                      -++|+||||+++.|.+||+||++-..+.+..|+||||.++...... ...++.....+ .....+.++.++++++.|+++
T Consensus         5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   83 (170)
T 2dum_A            5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEEL-MDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK   83 (170)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCC-C------------CCTTSHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-ccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999888777889999999875421111 00111000000 000123345566677788888


Q ss_pred             HHHhhhCCC
Q 029072          189 LDTCSQSKV  197 (199)
Q Consensus       189 ~~iC~~kkV  197 (199)
                      .+.|...++
T Consensus        84 ~~~~~~~g~   92 (170)
T 2dum_A           84 AEEVKRAFR   92 (170)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHcCC
Confidence            877765543

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=98.31  E-value=6.7e-07  Score=66.23  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=35.4

Q ss_pred             CEEEEEeCCCcc--hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          111 DIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       111 rkV~VAVD~Se~--Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ++|+||||+|+.  |.+||+||++-..+.+..|.|+||.++.
T Consensus         2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~   43 (143)
T 3fdx_A            2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSL   43 (143)
T ss_dssp             CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-
T ss_pred             CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCC
Confidence            689999999999  9999999988766567899999999875

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=98.30  E-value=1.9e-06  Score=64.40  Aligned_cols=41  Identities=22%  Similarity=0.182  Sum_probs=35.7

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      .++|+||||+|+.|.+||+||++-..+.+..|.|+||.++.
T Consensus         6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~   46 (150)
T 3tnj_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNI   46 (150)
T ss_dssp             CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCc
Confidence            47999999999999999999999776668899999998765

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=98.19  E-value=1.8e-06  Score=67.07  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEE--EecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI--HVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK  187 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLV--HV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdk  187 (199)
                      .++|+||||+|+.|.+||+||++... .+..|.||  ||.++....   .+ .+.   .   ...+.++.++.+++.|++
T Consensus        17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~---~~-~~~---~---~~~~~~~~~~~~~~~l~~   85 (163)
T 1tq8_A           17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR---AA-DIL---K---DESYKVTGTAPIYEILHD   85 (163)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------CCTHHHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccc---cc-ccc---c---cHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999887 78899999  776544210   01 000   0   112334455667788888


Q ss_pred             HHHHhhhCCC
Q 029072          188 FLDTCSQSKV  197 (199)
Q Consensus       188 y~~iC~~kkV  197 (199)
                      +.+.|...++
T Consensus        86 ~~~~~~~~gv   95 (163)
T 1tq8_A           86 AKERAHNAGA   95 (163)
T ss_dssp             HHHHHHTTTC
T ss_pred             HHHHHHHcCC
Confidence            8888876655

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=98.11  E-value=6.2e-06  Score=63.49  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             CCEEEEEeCC-CcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGK-SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (199)
Q Consensus       110 erkV~VAVD~-Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky  188 (199)
                      .++|+||||+ |+.+.+||+||++-....+..|.||||.++..         +.   .        ...++++++.|+++
T Consensus        24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~---------~~---~--------~~~~~~~~~~l~~~   83 (155)
T 3dlo_A           24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGG---------RT---K--------DEDIIEAKETLSWA   83 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCST---------TS---C--------HHHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC---------cc---c--------HHHHHHHHHHHHHH
Confidence            4799999999 99999999999987765678999999987531         01   1        23445567777777


Q ss_pred             HHHhhhCCC
Q 029072          189 LDTCSQSKV  197 (199)
Q Consensus       189 ~~iC~~kkV  197 (199)
                      .+.+.+.++
T Consensus        84 ~~~~~~~g~   92 (155)
T 3dlo_A           84 VSIIRKEGA   92 (155)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHhcCC
Confidence            777766554

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=98.10  E-value=4.4e-06  Score=69.54  Aligned_cols=79  Identities=11%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL  189 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~  189 (199)
                      .++|+||||+|+.+..||+||++-..+.+..|+|+||.++........+.         ....+....++.+++.|+++.
T Consensus        22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~   92 (294)
T 3loq_A           22 SNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGI---------DIDHYIDEMSEKAEEVLPEVA   92 (294)
T ss_dssp             TCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CC---------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             hccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccc---------cHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999776778899999998765322111111         111234556677888889998


Q ss_pred             HHhhhCCC
Q 029072          190 DTCSQSKV  197 (199)
Q Consensus       190 ~iC~~kkV  197 (199)
                      +.|.+.++
T Consensus        93 ~~~~~~g~  100 (294)
T 3loq_A           93 QKIEAAGI  100 (294)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            88887664

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=98.04  E-value=1.6e-05  Score=66.44  Aligned_cols=81  Identities=7%  Similarity=0.055  Sum_probs=59.4

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL  189 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~  189 (199)
                      .++|+|++|+|+.+..||+||+.-..+.+..|+|+||.++.....  .+.     +.......+.+...+++++.|+++.
T Consensus         7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~   79 (319)
T 3olq_A            7 YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM--TTL-----LSPDERNAMRKGVINQKTAWIKQQA   79 (319)
T ss_dssp             SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC--TTT-----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh--ccc-----cChhhHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999987665678999999976532211  111     2244555566667777888888888


Q ss_pred             HHhhhCCC
Q 029072          190 DTCSQSKV  197 (199)
Q Consensus       190 ~iC~~kkV  197 (199)
                      ..|...+|
T Consensus        80 ~~~~~~~v   87 (319)
T 3olq_A           80 RYYLEAGI   87 (319)
T ss_dssp             HHHHHTTC
T ss_pred             HHHhhcCC
Confidence            88876654

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=97.99  E-value=1.6e-05  Score=66.78  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL  189 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~  189 (199)
                      .++|+||+|+|+.+..||+||++-..+.+..|+|+||.++. ....+.+.     ...+    +....++.++++|+++.
T Consensus        19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~-~~~~~~~~-----~~~~----~~~~~~~~~~~~l~~~~   88 (309)
T 3cis_A           19 SLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPE-VATWLEVP-----LPPG----VLRWQQDHGRHLIDDAL   88 (309)
T ss_dssp             TTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCC-CCCTTCCC-----CCHH----HHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCc-ccccccCC-----CCch----hhHHHHHHHHHHHHHHH
Confidence            47999999999999999999998876667899999998743 22111111     1122    33445566677788877


Q ss_pred             HHhhhC
Q 029072          190 DTCSQS  195 (199)
Q Consensus       190 ~iC~~k  195 (199)
                      +.|.+.
T Consensus        89 ~~~~~~   94 (309)
T 3cis_A           89 KVVEQA   94 (309)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777653

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=97.98  E-value=1.1e-05  Score=59.68  Aligned_cols=40  Identities=18%  Similarity=0.222  Sum_probs=35.2

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ++|+||+|+|+.|.+||+||++...+.+..|.|+||.++.
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~   42 (137)
T 2z08_A            3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPV   42 (137)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCC
Confidence            5899999999999999999998776567899999998753

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=97.97  E-value=5.1e-06  Score=67.92  Aligned_cols=86  Identities=15%  Similarity=0.053  Sum_probs=55.7

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCcc-CCCCCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFV-PSPLGKLPRNQVNPEQL-ETFMAQETGKRRQLLQKF  188 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~I-ptp~G~iP~s~~~~e~v-ea~~~qer~eakeLLdky  188 (199)
                      ++|+||+|+|+.|.+||+||++-..+.+..|+|+||.++.... ....+ .+.....-..+ +.+.+..++.++++|+++
T Consensus         1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (268)
T 3ab8_A            1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLD-FGALTVPVPVLRTELERALALRGEAVLERV   79 (268)
T ss_dssp             CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998776567899999998653210 00011 11000000011 112455667788899999


Q ss_pred             HHHhhhCCC
Q 029072          189 LDTCSQSKV  197 (199)
Q Consensus       189 ~~iC~~kkV  197 (199)
                      ...|.+.++
T Consensus        80 ~~~~~~~g~   88 (268)
T 3ab8_A           80 RQSALAAGV   88 (268)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHhCCC
Confidence            999887664

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=97.93  E-value=6.7e-06  Score=60.81  Aligned_cols=39  Identities=28%  Similarity=0.153  Sum_probs=34.9

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ  149 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp  149 (199)
                      ++|+||+|+|+.+.+||+||++-..+.+..|.|+||.++
T Consensus         3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~   41 (141)
T 1jmv_A            3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVN   41 (141)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred             ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence            589999999999999999999877666789999999854

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=97.74  E-value=3.6e-05  Score=56.76  Aligned_cols=39  Identities=8%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEec-C
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF-P  148 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~-p  148 (199)
                      -++|+||+|+|+.|.+||+||++...+.+..|.|+||. +
T Consensus         4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~   43 (138)
T 1q77_A            4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED   43 (138)
T ss_dssp             CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred             ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence            46999999999999999999998887678899999998 5

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=97.40  E-value=0.00049  Score=57.13  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             CCCEEEEEeCCCcc-------hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          109 EEDIIYVAVGKSQS-------SMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       109 ~erkV~VAVD~Se~-------Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ..++|+||+|+|+.       |.+||+||++-....+..|.|+||.++.
T Consensus       133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~  181 (290)
T 3mt0_A          133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSP  181 (290)
T ss_dssp             TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--
T ss_pred             CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCc
Confidence            45899999999998       9999999998876668899999998764

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=97.27  E-value=0.00016  Score=60.14  Aligned_cols=39  Identities=18%  Similarity=-0.019  Sum_probs=35.1

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP  148 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p  148 (199)
                      .++|+|++|+|+.+..||+||+.-..+.+..|+|+||.+
T Consensus         7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~   45 (290)
T 3mt0_A            7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEK   45 (290)
T ss_dssp             CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECS
T ss_pred             hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeC
Confidence            479999999999999999999997766677999999986

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=97.19  E-value=0.00097  Score=55.52  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             CCCEEEEEeCCCc-------chHHHHHHHHHhccCC--CCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 029072          109 EEDIIYVAVGKSQ-------SSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETG  179 (199)
Q Consensus       109 ~erkV~VAVD~Se-------~Sk~ALkWALdNLv~~--gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~  179 (199)
                      ..++|+||+|++.       .|.+||+||++-....  +..|.||||.++.....  ...+|.     .....+.++.++
T Consensus       155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~~-----~~~~~~~~~~~~  227 (319)
T 3olq_A          155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELPD-----FDPNLYNNALRG  227 (319)
T ss_dssp             TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCTT-----CCHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCCc-----ccHHHHHHHHHH
Confidence            4589999999988       5799999998866433  88999999987652211  111121     123344555566


Q ss_pred             HHHHHHHHHHHH
Q 029072          180 KRRQLLQKFLDT  191 (199)
Q Consensus       180 eakeLLdky~~i  191 (199)
                      +.++.|..+.+.
T Consensus       228 ~~~~~l~~~~~~  239 (319)
T 3olq_A          228 QHLIAMKELRQK  239 (319)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665543

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=97.17  E-value=0.00054  Score=57.35  Aligned_cols=41  Identities=20%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      .++|+||+|+++.+.+||+||++-....+..|.||||.++.
T Consensus       171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~  211 (309)
T 3cis_A          171 QAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDV  211 (309)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSS
T ss_pred             CCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecc
Confidence            57899999999999999999998776567899999998754

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=96.98  E-value=0.001  Score=55.21  Aligned_cols=42  Identities=21%  Similarity=0.093  Sum_probs=36.7

Q ss_pred             CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      ..++|+||+|+++.+.+||+||++-....+..|.|+||.++.
T Consensus       169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~  210 (294)
T 3loq_A          169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG  210 (294)
T ss_dssp             TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCc
Confidence            458999999999999999999998765567899999998754

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=96.90  E-value=0.0014  Score=53.40  Aligned_cols=41  Identities=17%  Similarity=0.049  Sum_probs=34.1

Q ss_pred             CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ  149 (199)
Q Consensus       109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp  149 (199)
                      ..++|+||+|+++.+.+||+||.+-....+..|.|+||.++
T Consensus       153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~  193 (268)
T 3ab8_A          153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHED  193 (268)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSS
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCc
Confidence            35799999999999999999998755445667999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d2gm3a1	171	c.26.2.4 (A:5-175) Putative ethylene-responsive pr	1e-04

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 113 IYVAV---------GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRN 163
           + VAV           S S   A  WTL   V  +T  F I +             +   
Sbjct: 4   VMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI 63

Query: 164 QVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194
             +PE           K   LL+ F++ C +
Sbjct: 64  YASPEDFRDMRQSNKAKGLHLLEFFVNKCHE 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.3
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.98
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.71
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.62
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.46
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.43
d1wy5a1	216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	83.89
d1j20a1	165	Argininosuccinate synthetase, N-terminal domain {T	83.82
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	81.04

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=2.9e-12  Score=98.75  Aligned_cols=84  Identities=27%  Similarity=0.366  Sum_probs=62.2

Q ss_pred             CEEEEEeCCCc---------chHHHHHHHHHhccCCCC---eEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQ---------SSMDALSWTLRHAVNPST---LIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQET  178 (199)
Q Consensus       111 rkV~VAVD~Se---------~Sk~ALkWALdNLv~~gd---~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer  178 (199)
                      +||+||||+|.         .|++||+||++++.+.++   .|+++||.++........   +......+....++.+.+
T Consensus         2 ~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   78 (171)
T d2gm3a1           2 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDV---DSIYASPEDFRDMRQSNK   78 (171)
T ss_dssp             EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CCCCSHHHHHHHTTSHH
T ss_pred             CEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccc---cccccCHHHHHHHHHHHH
Confidence            59999999986         899999999999998777   599999987652221111   122234677777888888


Q ss_pred             HHHHHHHHHHHHHhhhCCC
Q 029072          179 GKRRQLLQKFLDTCSQSKV  197 (199)
Q Consensus       179 ~eakeLLdky~~iC~~kkV  197 (199)
                      +.++++|+++...|...++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~   97 (171)
T d2gm3a1          79 AKGLHLLEFFVNKCHEIGV   97 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            8999999999999987664

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=1.2e-09  Score=81.95  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=62.6

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCC-----CCCCCCCChHHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLG-----KLPRNQVNPEQLETFMAQETGKRRQLL  185 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G-----~iP~s~~~~e~vea~~~qer~eakeLL  185 (199)
                      ++|+||||+|+.|++||+||++...+.+.+|.|+||.++......+..     ........++....++++..+++++.|
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   83 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKM   83 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999977777889999999876533222111     111112234455557788888999999


Q ss_pred             HHHHHHhhhCCC
Q 029072          186 QKFLDTCSQSKV  197 (199)
Q Consensus       186 dky~~iC~~kkV  197 (199)
                      +++.+.|...+|
T Consensus        84 ~~~~~~~~~~gv   95 (160)
T d1mjha_          84 ENIKKELEDVGF   95 (160)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCC
Confidence            999999987765

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=2.2e-08  Score=72.81  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD  190 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~  190 (199)
                      ++|+||||+|+.|++||+||++...+.+..|+|+||.++....   .        .........++..+++++.|+++.+
T Consensus         2 k~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~l~~~~~   70 (135)
T d2z3va1           2 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY---L--------GEPFFEEALRRRLERAEGVLEEARA   70 (135)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTT---C--------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccc---c--------ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999887788999999999754211   1        1123344445566677777777765


Q ss_pred             Hh
Q 029072          191 TC  192 (199)
Q Consensus       191 iC  192 (199)
                      ..
T Consensus        71 ~~   72 (135)
T d2z3va1          71 LT   72 (135)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.62  E-value=1.3e-08  Score=73.69  Aligned_cols=42  Identities=10%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV  150 (199)
Q Consensus       109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~  150 (199)
                      .-++|+||+|+|+.|++||+||++...+.+..|+|+||.++.
T Consensus         3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~~   44 (138)
T d1q77a_           3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDV   44 (138)
T ss_dssp             CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHH
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEccCc
Confidence            358999999999999999999999988788999999998753

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=1e-07  Score=69.76  Aligned_cols=78  Identities=13%  Similarity=0.095  Sum_probs=46.4

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC-CccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV-KFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~-~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky  188 (199)
                      .++|+||||+|+.|++||+||++... ..+.++++|+..+. ...+...         ......+....++.++++++++
T Consensus         5 yk~ILv~vD~s~~s~~al~~A~~la~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~   74 (147)
T d1tq8a_           5 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAAD---------ILKDESYKVTGTAPIYEILHDA   74 (147)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------------CCTHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHh-cCCCEEEEEEEecccccccccc---------cchhhhHHHHHHHHHHHHHHHH
Confidence            47999999999999999999998654 55555555554332 1111110         1122234556677778888889


Q ss_pred             HHHhhhCCC
Q 029072          189 LDTCSQSKV  197 (199)
Q Consensus       189 ~~iC~~kkV  197 (199)
                      .+.|.+.++
T Consensus        75 ~~~~~~~~~   83 (147)
T d1tq8a_          75 KERAHNAGA   83 (147)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHcCC
Confidence            888887665

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=7.4e-08  Score=70.00  Aligned_cols=41  Identities=27%  Similarity=0.148  Sum_probs=37.2

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVK  151 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~  151 (199)
                      ++|+||||+++.|+.||+||+....+.+..|.++||.++..
T Consensus         3 k~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~   43 (140)
T d1jmva_           3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFS   43 (140)
T ss_dssp             SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCG
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecc
Confidence            69999999999999999999998877788999999987653

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.89  E-value=0.82  Score=35.25  Aligned_cols=38  Identities=18%  Similarity=0.058  Sum_probs=28.2

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhccC--CCCeEEEEEecC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAVN--PSTLIFLIHVFP  148 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv~--~gd~LVLVHV~p  148 (199)
                      .++|+|||-|+..|+..| |.|..+..  +...|.++||..
T Consensus        24 ~~kv~Va~SGG~DS~~Ll-~lL~~~~~~~~~~~i~~~~vdh   63 (216)
T d1wy5a1          24 ERRVLIAFSGGVDSVVLT-DVLLKLKNYFSLKEVALAHFNH   63 (216)
T ss_dssp             CCEEEEECCSSHHHHHHH-HHHHHSTTTTTCSEEEEEEEEC
T ss_pred             CCeEEEEeCCcHHHHHHH-HHHHHHHHhcCCCcEEEEEeec
Confidence            469999999999998554 55555542  345799999964

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.82  E-value=0.91  Score=30.69  Aligned_cols=36  Identities=11%  Similarity=0.012  Sum_probs=29.0

Q ss_pred             CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072          111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ  149 (199)
Q Consensus       111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp  149 (199)
                      .||+||+-|...|.-+|.|..+.+   +..++.+|++..
T Consensus         1 mKvlvA~SGG~DS~vll~lL~e~~---~~~vi~~~~~~~   36 (165)
T d1j20a1           1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTADIG   36 (165)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEESS
T ss_pred             CEEEEEEeCHHHHHHHHHHHHHcC---CCEEEEEEeccC
Confidence            489999999999999999865433   568888888754

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.04  E-value=1.2  Score=34.25  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CCEEEEEeCCCcchHHHHHHHHHhcc-CCCCeEEEEEecCC
Q 029072          110 EDIIYVAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQ  149 (199)
Q Consensus       110 erkV~VAVD~Se~Sk~ALkWALdNLv-~~gd~LVLVHV~pp  149 (199)
                      .++|+|||-|+..|+.+|....+-.. ..+..|+++||...
T Consensus        13 ~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~   53 (227)
T d1ni5a1          13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG   53 (227)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred             CCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCC
Confidence            46999999999999976655544332 25678999999653