Citrus Sinensis ID: 029091


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MAPTNVTSATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
cccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHcccHHcccccccEEEccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHcccc
cccHHcccccccccccccccccHHHEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHcHHHHHHHHHccccEEEEcccccEEEEEccccccHHHEEEEEEEHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccHEEEEEcc
maptnvtsataadidgdelspvEEVRLTvlnsddpslpvwTFRMWFLGLLSCALLSFLNQFfayrtepliITQITVQVATLPIGRFLaatlpetrfripgcgsrlfslnsgpfnvkEHVLISIFAnagsafgagsTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVvepahmwwpstlvqvslfr
maptnvtsataadidgdelsPVEEVRLtvlnsddpslPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWwpstlvqvslfr
MAPTNVTSATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWflgllscallsflNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLIsifanagsafgagstfaVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
************************VRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSL**
*****************ELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
***********ADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
******************LSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
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MAPTNVTSATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
Q9FME8 729 Oligopeptide transporter yes no 0.959 0.262 0.811 6e-89
O04514 734 Oligopeptide transporter no no 0.924 0.250 0.718 5e-76
O23482 737 Oligopeptide transporter no no 0.984 0.265 0.545 2e-59
O82485 766 Oligopeptide transporter no no 0.869 0.225 0.618 2e-58
Q9SUA4 753 Oligopeptide transporter no no 0.879 0.232 0.588 3e-58
Q9FG72 755 Oligopeptide transporter no no 0.879 0.231 0.561 7e-54
Q9FJD1 733 Oligopeptide transporter no no 0.934 0.253 0.532 2e-53
Q9FJD2 741 Oligopeptide transporter no no 0.929 0.249 0.558 1e-52
Q9T095 736 Oligopeptide transporter no no 0.889 0.240 0.567 1e-52
O14031 851 Glutathione transporter 1 yes no 0.874 0.204 0.401 5e-26
>sp|Q9FME8|OPT4_ARATH Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1 Back     alignment and function desciption
 Score =  326 bits (836), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 155/191 (81%), Positives = 172/191 (90%)

Query: 9   ATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEP 68
           ATA +   ++ SP+EEVRLTV N+DDP+LPVWTFRMWFLGL+SC+LLSFLNQFF+YRTEP
Sbjct: 2   ATADEFSDEDTSPIEEVRLTVTNTDDPTLPVWTFRMWFLGLISCSLLSFLNQFFSYRTEP 61

Query: 69  LIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAG 128
           L+ITQITVQVATLPIG FLA  LP+TRF +PGCGS  FSLN GPFN+KEHVLISIFANAG
Sbjct: 62  LVITQITVQVATLPIGHFLAKVLPKTRFGLPGCGSARFSLNPGPFNMKEHVLISIFANAG 121

Query: 129 SAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 188
           SAFG+GS +AV I+ IIKAFY R ISF+A WLLIITTQVLGYGWAGLLRKYVVEPAHMWW
Sbjct: 122 SAFGSGSAYAVGIITIIKAFYGRSISFIAGWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 181

Query: 189 PSTLVQVSLFR 199
           PSTLVQVSLFR
Sbjct: 182 PSTLVQVSLFR 192




Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.
Arabidopsis thaliana (taxid: 3702)
>sp|O04514|OPT2_ARATH Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2 Back     alignment and function description
>sp|O23482|OPT3_ARATH Oligopeptide transporter 3 OS=Arabidopsis thaliana GN=OPT3 PE=2 SV=3 Back     alignment and function description
>sp|O82485|OPT7_ARATH Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 OS=Arabidopsis thaliana GN=OPT5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJD1|OPT8_ARATH Oligopeptide transporter 8 OS=Arabidopsis thaliana GN=OPT8 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJD2|OPT9_ARATH Oligopeptide transporter 9 OS=Arabidopsis thaliana GN=OPT9 PE=2 SV=1 Back     alignment and function description
>sp|Q9T095|OPT6_ARATH Oligopeptide transporter 6 OS=Arabidopsis thaliana GN=OPT6 PE=2 SV=1 Back     alignment and function description
>sp|O14031|PGT1_SCHPO Glutathione transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pgt1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
225429224 744 PREDICTED: oligopeptide transporter 4 is 0.964 0.258 0.854 1e-90
359475580 751 PREDICTED: oligopeptide transporter 4 is 0.964 0.255 0.824 1e-88
297797459 729 hypothetical protein ARALYDRAFT_496649 [ 0.959 0.262 0.811 3e-87
15237689 729 oligopeptide transporter 4 [Arabidopsis 0.959 0.262 0.811 3e-87
255572830 744 Oligopeptide transporter, putative [Rici 1.0 0.267 0.778 3e-87
449459618 738 PREDICTED: oligopeptide transporter 4-li 0.989 0.266 0.802 4e-87
21592665 729 Isp4-like protein [Arabidopsis thaliana] 0.959 0.262 0.811 4e-87
224103837 752 oligopeptide transporter OPT family [Pop 0.984 0.260 0.775 3e-86
224081897 747 oligopeptide transporter OPT family [Pop 0.939 0.250 0.830 5e-86
225459018 757 PREDICTED: oligopeptide transporter 4 [V 0.974 0.256 0.770 1e-83
>gi|225429224|ref|XP_002263530.1| PREDICTED: oligopeptide transporter 4 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/192 (85%), Positives = 175/192 (91%)

Query: 8   SATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTE 67
           S +A D D DELSP+EEVRLTV N+DDPSLPVWTFRMWF+GL SCALLSFL+QFFAYRTE
Sbjct: 16  SISATDGDEDELSPIEEVRLTVTNTDDPSLPVWTFRMWFMGLFSCALLSFLDQFFAYRTE 75

Query: 68  PLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANA 127
           PLIITQITVQVATLPIG F+AA LP TRFRIPG GSR FSLN GPFN+KEHVLISIFANA
Sbjct: 76  PLIITQITVQVATLPIGHFMAAVLPTTRFRIPGFGSRSFSLNPGPFNMKEHVLISIFANA 135

Query: 128 GSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMW 187
           GSAFG+GS +AV IV IIKAFY RKISFL+ WLLIITTQVLGYGWAGLLRKYVVEPAHMW
Sbjct: 136 GSAFGSGSAYAVGIVTIIKAFYQRKISFLSGWLLIITTQVLGYGWAGLLRKYVVEPAHMW 195

Query: 188 WPSTLVQVSLFR 199
           WPS+LVQVSLFR
Sbjct: 196 WPSSLVQVSLFR 207




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475580|ref|XP_003631708.1| PREDICTED: oligopeptide transporter 4 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797459|ref|XP_002866614.1| hypothetical protein ARALYDRAFT_496649 [Arabidopsis lyrata subsp. lyrata] gi|297312449|gb|EFH42873.1| hypothetical protein ARALYDRAFT_496649 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237689|ref|NP_201246.1| oligopeptide transporter 4 [Arabidopsis thaliana] gi|67460974|sp|Q9FME8.1|OPT4_ARATH RecName: Full=Oligopeptide transporter 4; Short=AtOPT4 gi|9759417|dbj|BAB09872.1| Isp4-like protein [Arabidopsis thaliana] gi|20466754|gb|AAM20694.1| Isp4-like protein [Arabidopsis thaliana] gi|23198262|gb|AAN15658.1| Isp4-like protein [Arabidopsis thaliana] gi|110742320|dbj|BAE99084.1| Isp4-like protein [Arabidopsis thaliana] gi|332010507|gb|AED97890.1| oligopeptide transporter 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255572830|ref|XP_002527347.1| Oligopeptide transporter, putative [Ricinus communis] gi|223533266|gb|EEF35019.1| Oligopeptide transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459618|ref|XP_004147543.1| PREDICTED: oligopeptide transporter 4-like [Cucumis sativus] gi|449527976|ref|XP_004170983.1| PREDICTED: oligopeptide transporter 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21592665|gb|AAM64614.1| Isp4-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224103837|ref|XP_002313213.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222849621|gb|EEE87168.1| oligopeptide transporter OPT family [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081897|ref|XP_002306519.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222855968|gb|EEE93515.1| oligopeptide transporter OPT family [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459018|ref|XP_002283680.1| PREDICTED: oligopeptide transporter 4 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2173408 729 OPT4 "AT5G64410" [Arabidopsis 0.959 0.262 0.680 1.2e-67
TAIR|locus:2024372 734 OPT2 "oligopeptide transporter 0.924 0.250 0.601 1.6e-56
TAIR|locus:2133882 753 OPT5 "oligopeptide transporter 0.879 0.232 0.505 4e-44
TAIR|locus:2132736 766 OPT7 "AT4G10770" [Arabidopsis 0.884 0.229 0.505 9.5e-44
TAIR|locus:2178398 755 OPT1 "AT5G55930" [Arabidopsis 0.879 0.231 0.472 1.4e-40
TAIR|locus:2168616 741 OPT9 "oligopeptide transporter 0.929 0.249 0.482 9.5e-40
TAIR|locus:2168626 733 OPT8 "oligopeptide transporter 0.934 0.253 0.456 3.2e-39
TAIR|locus:2137727 736 OPT6 "oligopeptide transporter 0.929 0.251 0.476 4.2e-39
POMBASE|SPAC29B12.10c 851 pgt1 "glutathione transporter 0.899 0.210 0.368 8.3e-24
SGD|S000003748 799 OPT1 "Proton-coupled oligopept 0.849 0.211 0.366 2.3e-22
TAIR|locus:2173408 OPT4 "AT5G64410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 130/191 (68%), Positives = 143/191 (74%)

Query:     9 ATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWXXXXXXXXXXXXXNQFFAYRTEP 68
             ATA +   ++ SP+EEVRLTV N+DDP+LPVWTFRMW             NQFF+YRTEP
Sbjct:     2 ATADEFSDEDTSPIEEVRLTVTNTDDPTLPVWTFRMWFLGLISCSLLSFLNQFFSYRTEP 61

Query:    69 LIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLIXXXXXXX 128
             L+ITQITVQVATLPIG FLA  LP+TRF +PGCGS  FSLN GPFN+KEHVLI       
Sbjct:    62 LVITQITVQVATLPIGHFLAKVLPKTRFGLPGCGSARFSLNPGPFNMKEHVLISIFANAG 121

Query:   129 XXXXXXXXXXVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 188
                       V I+ IIKAFY R ISF+A WLLIITTQVLGYGWAGLLRKYVVEPAHMWW
Sbjct:   122 SAFGSGSAYAVGIITIIKAFYGRSISFIAGWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 181

Query:   189 PSTLVQVSLFR 199
             PSTLVQVSLFR
Sbjct:   182 PSTLVQVSLFR 192




GO:0015198 "oligopeptide transporter activity" evidence=IGI;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006857 "oligopeptide transport" evidence=IGI;RCA
GO:0016020 "membrane" evidence=ISS
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2024372 OPT2 "oligopeptide transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133882 OPT5 "oligopeptide transporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132736 OPT7 "AT4G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178398 OPT1 "AT5G55930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168616 OPT9 "oligopeptide transporter 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168626 OPT8 "oligopeptide transporter 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137727 OPT6 "oligopeptide transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC29B12.10c pgt1 "glutathione transporter Pgt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000003748 OPT1 "Proton-coupled oligopeptide transporter of the plasma membrane" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FME8OPT4_ARATHNo assigned EC number0.81150.95970.2620yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00005733001
SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (744 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
TIGR00728 606 TIGR00728, OPT_sfam, oligopeptide transporter, OPT 3e-45
TIGR00727 681 TIGR00727, ISP4_OPT, small oligopeptide transporte 1e-35
pfam03169 619 pfam03169, OPT, OPT oligopeptide transporter prote 1e-33
>gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily Back     alignment and domain information
 Score =  157 bits (399), Expect = 3e-45
 Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 14/179 (7%)

Query: 23  EEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLP 82
           +EVR  V  +DDPSLP  TFR WFLG+L   + + +NQFF  RT  + I+ I   +   P
Sbjct: 1   QEVRA-VPPTDDPSLPELTFRAWFLGILIGVVFAAVNQFFGLRTGSVSISSIVAALLAYP 59

Query: 83  IGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIV 142
           +G+  A  +P+            FSLN GPFNVKE+ LI   A+A      G  +A+ I+
Sbjct: 60  LGKLWALIIPDWE-------GWKFSLNPGPFNVKENNLIQTAASACG----GLAYAIFIL 108

Query: 143 NIIKAFYHRKISFLASWLLIITTQV--LGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR 199
              K FY    S+    LL+ +TQ+  LG+G+AGLLR+ +V PA + WPS L    LF+
Sbjct: 109 PAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFK 167


This superfamily has two main branches. One branch contains a tetrapeptide transporter demonstrated experimentally in three different species of yeast. The other family contains EspB of Myxococcus xanthus, a protein required for normal rather than delayed sporulation after cellular aggregation; its role is unknown but is compatible with transport of a signalling molecule. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches. Length = 606

>gnl|CDD|129810 TIGR00727, ISP4_OPT, small oligopeptide transporter, OPT family Back     alignment and domain information
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
KOG2262 761 consensus Sexual differentiation process protein I 100.0
TIGR00727 681 ISP4_OPT small oligopeptide transporter, OPT famil 100.0
TIGR00728 654 OPT_sfam oligopeptide transporters, OPT superfamil 100.0
PF03169 624 OPT: OPT oligopeptide transporter protein; InterPr 100.0
TIGR00733 591 putative oligopeptide transporter, OPT family. Thi 98.57
COG1297 624 Predicted membrane protein [Function unknown] 97.42
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms] Back     alignment and domain information
Probab=100.00  E-value=4.1e-66  Score=491.35  Aligned_cols=180  Identities=62%  Similarity=1.116  Sum_probs=174.9

Q ss_pred             CCCCCCChHHHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCC
Q 029091           14 IDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPE   93 (199)
Q Consensus        14 ~~~~~~sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~   93 (199)
                      .+++|||||||||++||++|||++|++|||||+||+++|+++|++||||++|+|+++|+.+++|+++||+||+|||+||+
T Consensus        45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~  124 (761)
T KOG2262|consen   45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT  124 (761)
T ss_pred             ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCCCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHh
Q 029091           94 TRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWA  173 (199)
Q Consensus        94 ~~~~~~~~~g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~~~~~~g~~il~~lstQllG~G~A  173 (199)
                      |++++.  ++|+++|||||||.|||++|||+||++    +|.+|++.+|.+||+||+++.++++++|++++||++|||+|
T Consensus       125 ~~~~~~--~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwA  198 (761)
T KOG2262|consen  125 WKFGLG--GRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWA  198 (761)
T ss_pred             eeeecC--cceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHh
Confidence            999863  488999999999999999999999998    89999999999999999999999999999999999999999


Q ss_pred             hhccceeeecCCcccCchhhhcccCC
Q 029091          174 GLLRKYVVEPAHMWWPSTLVQVSLFR  199 (199)
Q Consensus       174 Gl~R~~lV~P~~miwP~~L~~~aLf~  199 (199)
                      ||+||+||||++|+||++|++|+||+
T Consensus       199 Gl~Rk~lV~Pa~m~WPsnLvqvsLFr  224 (761)
T KOG2262|consen  199 GLFRKYLVYPASMWWPSNLVQVSLFR  224 (761)
T ss_pred             hhhHhhccCcHhhcCcchhHHHHHHH
Confidence            99999999999999999999999985



>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family Back     alignment and domain information
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily Back     alignment and domain information
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast Back     alignment and domain information
>TIGR00733 putative oligopeptide transporter, OPT family Back     alignment and domain information
>COG1297 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00