Citrus Sinensis ID: 029091
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 199 | ||||||
| 225429224 | 744 | PREDICTED: oligopeptide transporter 4 is | 0.964 | 0.258 | 0.854 | 1e-90 | |
| 359475580 | 751 | PREDICTED: oligopeptide transporter 4 is | 0.964 | 0.255 | 0.824 | 1e-88 | |
| 297797459 | 729 | hypothetical protein ARALYDRAFT_496649 [ | 0.959 | 0.262 | 0.811 | 3e-87 | |
| 15237689 | 729 | oligopeptide transporter 4 [Arabidopsis | 0.959 | 0.262 | 0.811 | 3e-87 | |
| 255572830 | 744 | Oligopeptide transporter, putative [Rici | 1.0 | 0.267 | 0.778 | 3e-87 | |
| 449459618 | 738 | PREDICTED: oligopeptide transporter 4-li | 0.989 | 0.266 | 0.802 | 4e-87 | |
| 21592665 | 729 | Isp4-like protein [Arabidopsis thaliana] | 0.959 | 0.262 | 0.811 | 4e-87 | |
| 224103837 | 752 | oligopeptide transporter OPT family [Pop | 0.984 | 0.260 | 0.775 | 3e-86 | |
| 224081897 | 747 | oligopeptide transporter OPT family [Pop | 0.939 | 0.250 | 0.830 | 5e-86 | |
| 225459018 | 757 | PREDICTED: oligopeptide transporter 4 [V | 0.974 | 0.256 | 0.770 | 1e-83 |
| >gi|225429224|ref|XP_002263530.1| PREDICTED: oligopeptide transporter 4 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/192 (85%), Positives = 175/192 (91%)
Query: 8 SATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTE 67
S +A D D DELSP+EEVRLTV N+DDPSLPVWTFRMWF+GL SCALLSFL+QFFAYRTE
Sbjct: 16 SISATDGDEDELSPIEEVRLTVTNTDDPSLPVWTFRMWFMGLFSCALLSFLDQFFAYRTE 75
Query: 68 PLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANA 127
PLIITQITVQVATLPIG F+AA LP TRFRIPG GSR FSLN GPFN+KEHVLISIFANA
Sbjct: 76 PLIITQITVQVATLPIGHFMAAVLPTTRFRIPGFGSRSFSLNPGPFNMKEHVLISIFANA 135
Query: 128 GSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMW 187
GSAFG+GS +AV IV IIKAFY RKISFL+ WLLIITTQVLGYGWAGLLRKYVVEPAHMW
Sbjct: 136 GSAFGSGSAYAVGIVTIIKAFYQRKISFLSGWLLIITTQVLGYGWAGLLRKYVVEPAHMW 195
Query: 188 WPSTLVQVSLFR 199
WPS+LVQVSLFR
Sbjct: 196 WPSSLVQVSLFR 207
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475580|ref|XP_003631708.1| PREDICTED: oligopeptide transporter 4 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297797459|ref|XP_002866614.1| hypothetical protein ARALYDRAFT_496649 [Arabidopsis lyrata subsp. lyrata] gi|297312449|gb|EFH42873.1| hypothetical protein ARALYDRAFT_496649 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15237689|ref|NP_201246.1| oligopeptide transporter 4 [Arabidopsis thaliana] gi|67460974|sp|Q9FME8.1|OPT4_ARATH RecName: Full=Oligopeptide transporter 4; Short=AtOPT4 gi|9759417|dbj|BAB09872.1| Isp4-like protein [Arabidopsis thaliana] gi|20466754|gb|AAM20694.1| Isp4-like protein [Arabidopsis thaliana] gi|23198262|gb|AAN15658.1| Isp4-like protein [Arabidopsis thaliana] gi|110742320|dbj|BAE99084.1| Isp4-like protein [Arabidopsis thaliana] gi|332010507|gb|AED97890.1| oligopeptide transporter 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|255572830|ref|XP_002527347.1| Oligopeptide transporter, putative [Ricinus communis] gi|223533266|gb|EEF35019.1| Oligopeptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449459618|ref|XP_004147543.1| PREDICTED: oligopeptide transporter 4-like [Cucumis sativus] gi|449527976|ref|XP_004170983.1| PREDICTED: oligopeptide transporter 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|21592665|gb|AAM64614.1| Isp4-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|224103837|ref|XP_002313213.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222849621|gb|EEE87168.1| oligopeptide transporter OPT family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224081897|ref|XP_002306519.1| oligopeptide transporter OPT family [Populus trichocarpa] gi|222855968|gb|EEE93515.1| oligopeptide transporter OPT family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225459018|ref|XP_002283680.1| PREDICTED: oligopeptide transporter 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 199 | ||||||
| TAIR|locus:2173408 | 729 | OPT4 "AT5G64410" [Arabidopsis | 0.959 | 0.262 | 0.680 | 1.2e-67 | |
| TAIR|locus:2024372 | 734 | OPT2 "oligopeptide transporter | 0.924 | 0.250 | 0.601 | 1.6e-56 | |
| TAIR|locus:2133882 | 753 | OPT5 "oligopeptide transporter | 0.879 | 0.232 | 0.505 | 4e-44 | |
| TAIR|locus:2132736 | 766 | OPT7 "AT4G10770" [Arabidopsis | 0.884 | 0.229 | 0.505 | 9.5e-44 | |
| TAIR|locus:2178398 | 755 | OPT1 "AT5G55930" [Arabidopsis | 0.879 | 0.231 | 0.472 | 1.4e-40 | |
| TAIR|locus:2168616 | 741 | OPT9 "oligopeptide transporter | 0.929 | 0.249 | 0.482 | 9.5e-40 | |
| TAIR|locus:2168626 | 733 | OPT8 "oligopeptide transporter | 0.934 | 0.253 | 0.456 | 3.2e-39 | |
| TAIR|locus:2137727 | 736 | OPT6 "oligopeptide transporter | 0.929 | 0.251 | 0.476 | 4.2e-39 | |
| POMBASE|SPAC29B12.10c | 851 | pgt1 "glutathione transporter | 0.899 | 0.210 | 0.368 | 8.3e-24 | |
| SGD|S000003748 | 799 | OPT1 "Proton-coupled oligopept | 0.849 | 0.211 | 0.366 | 2.3e-22 |
| TAIR|locus:2173408 OPT4 "AT5G64410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 130/191 (68%), Positives = 143/191 (74%)
Query: 9 ATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWXXXXXXXXXXXXXNQFFAYRTEP 68
ATA + ++ SP+EEVRLTV N+DDP+LPVWTFRMW NQFF+YRTEP
Sbjct: 2 ATADEFSDEDTSPIEEVRLTVTNTDDPTLPVWTFRMWFLGLISCSLLSFLNQFFSYRTEP 61
Query: 69 LIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLIXXXXXXX 128
L+ITQITVQVATLPIG FLA LP+TRF +PGCGS FSLN GPFN+KEHVLI
Sbjct: 62 LVITQITVQVATLPIGHFLAKVLPKTRFGLPGCGSARFSLNPGPFNMKEHVLISIFANAG 121
Query: 129 XXXXXXXXXXVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 188
V I+ IIKAFY R ISF+A WLLIITTQVLGYGWAGLLRKYVVEPAHMWW
Sbjct: 122 SAFGSGSAYAVGIITIIKAFYGRSISFIAGWLLIITTQVLGYGWAGLLRKYVVEPAHMWW 181
Query: 189 PSTLVQVSLFR 199
PSTLVQVSLFR
Sbjct: 182 PSTLVQVSLFR 192
|
|
| TAIR|locus:2024372 OPT2 "oligopeptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2133882 OPT5 "oligopeptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132736 OPT7 "AT4G10770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178398 OPT1 "AT5G55930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168616 OPT9 "oligopeptide transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168626 OPT8 "oligopeptide transporter 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2137727 OPT6 "oligopeptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC29B12.10c pgt1 "glutathione transporter Pgt1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| SGD|S000003748 OPT1 "Proton-coupled oligopeptide transporter of the plasma membrane" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00005733001 | SubName- Full=Chromosome chr3 scaffold_157, whole genome shotgun sequence; (744 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 199 | |||
| TIGR00728 | 606 | TIGR00728, OPT_sfam, oligopeptide transporter, OPT | 3e-45 | |
| TIGR00727 | 681 | TIGR00727, ISP4_OPT, small oligopeptide transporte | 1e-35 | |
| pfam03169 | 619 | pfam03169, OPT, OPT oligopeptide transporter prote | 1e-33 |
| >gnl|CDD|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 3e-45
Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 23 EEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLP 82
+EVR V +DDPSLP TFR WFLG+L + + +NQFF RT + I+ I + P
Sbjct: 1 QEVRA-VPPTDDPSLPELTFRAWFLGILIGVVFAAVNQFFGLRTGSVSISSIVAALLAYP 59
Query: 83 IGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIV 142
+G+ A +P+ FSLN GPFNVKE+ LI A+A G +A+ I+
Sbjct: 60 LGKLWALIIPDWE-------GWKFSLNPGPFNVKENNLIQTAASACG----GLAYAIFIL 108
Query: 143 NIIKAFYHRKISFLASWLLIITTQV--LGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFR 199
K FY S+ LL+ +TQ+ LG+G+AGLLR+ +V PA + WPS L LF+
Sbjct: 109 PAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFK 167
|
This superfamily has two main branches. One branch contains a tetrapeptide transporter demonstrated experimentally in three different species of yeast. The other family contains EspB of Myxococcus xanthus, a protein required for normal rather than delayed sporulation after cellular aggregation; its role is unknown but is compatible with transport of a signalling molecule. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches. Length = 606 |
| >gnl|CDD|129810 TIGR00727, ISP4_OPT, small oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 199 | |||
| KOG2262 | 761 | consensus Sexual differentiation process protein I | 100.0 | |
| TIGR00727 | 681 | ISP4_OPT small oligopeptide transporter, OPT famil | 100.0 | |
| TIGR00728 | 654 | OPT_sfam oligopeptide transporters, OPT superfamil | 100.0 | |
| PF03169 | 624 | OPT: OPT oligopeptide transporter protein; InterPr | 100.0 | |
| TIGR00733 | 591 | putative oligopeptide transporter, OPT family. Thi | 98.57 | |
| COG1297 | 624 | Predicted membrane protein [Function unknown] | 97.42 |
| >KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=491.35 Aligned_cols=180 Identities=62% Similarity=1.116 Sum_probs=174.9
Q ss_pred CCCCCCChHHHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCC
Q 029091 14 IDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPE 93 (199)
Q Consensus 14 ~~~~~~sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~ 93 (199)
.+++|||||||||++||++|||++|++|||||+||+++|+++|++||||++|+|+++|+.+++|+++||+||+|||+||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHh
Q 029091 94 TRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWA 173 (199)
Q Consensus 94 ~~~~~~~~~g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~~~~~~g~~il~~lstQllG~G~A 173 (199)
|++++. ++|+++|||||||.|||++|||+||++ +|.+|++.+|.+||+||+++.++++++|++++||++|||+|
T Consensus 125 ~~~~~~--~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwA 198 (761)
T KOG2262|consen 125 WKFGLG--GRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWA 198 (761)
T ss_pred eeeecC--cceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHh
Confidence 999863 488999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCcccCchhhhcccCC
Q 029091 174 GLLRKYVVEPAHMWWPSTLVQVSLFR 199 (199)
Q Consensus 174 Gl~R~~lV~P~~miwP~~L~~~aLf~ 199 (199)
||+||+||||++|+||++|++|+||+
T Consensus 199 Gl~Rk~lV~Pa~m~WPsnLvqvsLFr 224 (761)
T KOG2262|consen 199 GLFRKYLVYPASMWWPSNLVQVSLFR 224 (761)
T ss_pred hhhHhhccCcHhhcCcchhHHHHHHH
Confidence 99999999999999999999999985
|
|
| >TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily | Back alignment and domain information |
|---|
| >PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast | Back alignment and domain information |
|---|
| >TIGR00733 putative oligopeptide transporter, OPT family | Back alignment and domain information |
|---|
| >COG1297 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00