Citrus Sinensis ID: 029094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSLKPPTNYGSATTTTNPTTTTSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHcccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccEEEcccccccccccEEEc
Coil and Loop (DISEMBL)
mslkpptnygsattttnpttttslSFFSRAesltatrrpwreffntsalslpadynDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFyfarddpvvvfnqtlddkfvLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHasfratddlfldeesaaegglvsvlggtqpvrltgytri
Flexible Loop (DISEMBL)
mslkpptnygsattttnpttttslsFFSRAESLTATRRPWREFFNtsalslpadYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEgglvsvlggtqpvrltgytri
Low Complexity Region (SEG)
MSLKPPTNYGSAttttnpttttSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMivfivvfvlwlffYFARDDPVVVFNQTLDDKFVLGCltlvtvlaliltdvgtnvlvglivgvvlvglHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI
Disordered region (IsUnstruct)
********************************LTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPV********
Disordered Region (DISOPRED)
**********************************A*RRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESA***********************
Disordered Region (DISEMBL)
***************TNPTTTTSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI
Disordered Region (DISPRO)
*********************TSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLKPPTNYGSATTTTNPTTTTSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9FRR1	209	PRA1 family protein E OS=	yes	no	0.894	0.851	0.532	1e-43
Q9C889	189	PRA1 family protein F2 OS	no	no	0.889	0.936	0.478	8e-43
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.849	0.898	0.433	2e-34
O80915	220	PRA1 family protein B4 OS	no	no	0.768	0.695	0.438	1e-33
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.854	0.904	0.436	2e-33
Q9M012	223	PRA1 family protein B5 OS	no	no	0.748	0.668	0.397	2e-28
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.904	0.861	0.374	4e-28
Q9SIY7	213	PRA1 family protein B2 OS	no	no	0.919	0.859	0.357	7e-28
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.929	0.852	0.390	9e-28
P93829	182	PRA1 family protein D OS=	no	no	0.854	0.934	0.352	1e-26

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 132/182 (72%), Gaps = 4/182 (2%)

Query: 13  TTTTNPTTTTSLSFFSRA--ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFR 70
           ++T+N T   +LS  ++   +S+  T RPWRE  + SALSLP  Y++A++  + N SYFR
Sbjct: 21  SSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFR 80

Query: 71  VNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARD--DPVVVFNQTLDDKFVLGC 128
            NYA+ +L I+FL L++HP+SMI FIVVF+ W+  YF+RD  D +V+  + +DDK VL  
Sbjct: 81  GNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVL 140

Query: 129 LTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGT 188
           L+LVTVLAL+ TDVG NVLV LI+G+++VG H +FR TDDLFLDEESA  GGLVS   G 
Sbjct: 141 LSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSGN 200

Query: 189 QP 190
           +P
Sbjct: 201 RP 202

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 7/184 (3%)

Query: 7   TNYGSATTTTNPTTTTSLSFFSRAE----SLTATRRPWREFFNTSALSLPADYNDAISRA 62
           TNYG+  T+++P+    L + SRA+    S  ATRRPW+  F+  +++LP  + DAISR 
Sbjct: 2   TNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRI 61

Query: 63  RRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDD 122
           + N  YFR NYA+ +LFILFLSLL+HP S+IV  ++ V W+F YF RD+P+VVF   +DD
Sbjct: 62  KTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDD 121

Query: 123 KFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAA---EG 179
           + VL  L+++TV+ L+LT   +N+L  L+   VLV +HA+ R +D+LFLDEE+AA     
Sbjct: 122 RTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEAS 181

Query: 180 GLVS 183
           GL+S
Sbjct: 182 GLMS 185

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 4/173 (2%)

Query: 8   NYGSATTTTNPTTTTSLSFFSRAESLT----ATRRPWREFFNTSALSLPADYNDAISRAR 63
           N    TT+++ +   +    SRA+       ATRR WR  F+  +  LP   +D  SR +
Sbjct: 3   NNDEITTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIK 62

Query: 64  RNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDK 123
            N +YFR NYA+V+L ++F SL+WHP S+IVF  +  LW+F YF RD P+ VF   +DD+
Sbjct: 63  TNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDR 122

Query: 124 FVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESA 176
            VL  L+++T++ L+LT+   N++  L+ G VLV +HA  R TDDLFLDEE+A
Sbjct: 123 AVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAA 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 35  ATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIV 94
           + RRPW E  + SALS P   +DA  R R+N SYF+VNY  V   I+  SL+ HP S++ 
Sbjct: 52  SKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVF 111

Query: 95  FIVVFVLWLFFYFAR--DDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIV 152
            + +   WLF Y  R  D P+V+F +T  D+  LGCL L ++  + LTDVG+ ++  +++
Sbjct: 112 LLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMI 171

Query: 153 GVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGG 187
           GV L+  H +FRA +DLFLDE+  A  G +S LGG
Sbjct: 172 GVALICAHGAFRAPEDLFLDEQEPAATGFLSFLGG 206

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 118/174 (67%), Gaps = 4/174 (2%)

Query: 7   TNYGSATTTTNPTTTTSLSFFSRAESLT----ATRRPWREFFNTSALSLPADYNDAISRA 62
           TNYG+  T+++ +    +   SRA+       ATRR WR  F+  ++ LP   +DA +R 
Sbjct: 2   TNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRI 61

Query: 63  RRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDD 122
           + N +YFR+NYA+V+L ++F SL+WHP S+IVF V+ V+W+F YF RD+P+ +F   +DD
Sbjct: 62  KTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDD 121

Query: 123 KFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESA 176
           + VL  L+++TV+ L+LT+   N++  L+ G VLV +H+  R T+DLFLDEE+A
Sbjct: 122 RTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 2/151 (1%)

Query: 38  RPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIV 97
           RPW E  + SA + P   ++A +R R+N+SYFRVNY  ++  IL  SLL HP S+I+ + 
Sbjct: 55  RPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLC 114

Query: 98  VFVLWLFFYFAR--DDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVV 155
           +   WLF Y  R  D P+++F ++  +   LG L L T+  +  T VG+ ++  L++G+ 
Sbjct: 115 LAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIA 174

Query: 156 LVGLHASFRATDDLFLDEESAAEGGLVSVLG 186
            + +H +FRA DDLFLDE+  A  G +S +G
Sbjct: 175 TICVHGAFRAPDDLFLDEQDHAASGFLSFIG 205

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 7/187 (3%)

Query: 6   PTNYGSATTTTNPTTTTSL-SFFSRAESLT----ATRRPWREFFNTSALSLPADYNDAIS 60
           P     A  +  P  T +  +FFSR  +      + RRPW E  + S+++ P    DA+S
Sbjct: 8   PVTNQQAVQSQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALS 67

Query: 61  RARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFAR--DDPVVVFNQ 118
           R R+N +YF+VNY  ++  +L  SL  HP+S++V I +   W+F Y  R  D P+VVF +
Sbjct: 68  RIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGR 127

Query: 119 TLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAE 178
           T  D+  L  L L T++ + +T VG+ +   L++GV +V +H +F   DDLFLDE+  A 
Sbjct: 128 TFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187

Query: 179 GGLVSVL 185
            GL+S L
Sbjct: 188 AGLLSFL 194

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 7/190 (3%)

Query: 5   PPTNYGSATTTTNPTTTTSLSFFSRAESLTA-----TRRPWREFFNTSALSLPADYNDAI 59
           P TN  +AT +  P  + +   F    S +       RRPW E  + S+ + P    D+ 
Sbjct: 9   PVTNQQAATQSQPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSF 68

Query: 60  SRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFAR--DDPVVVFN 117
           SR R+N +YF+VNY+ ++  +L  SLL HP S++V + +   W+F Y  R  D P+V+F 
Sbjct: 69  SRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFG 128

Query: 118 QTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAA 177
           ++  D+  L  L L T++ + +T VG+ +   L +G+ +V LH +FR  DDLFLDE+  A
Sbjct: 129 RSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPA 188

Query: 178 EGGLVSVLGG 187
             GL+S +G 
Sbjct: 189 NAGLLSFIGN 198

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score =  123 bits (308), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 12/197 (6%)

Query: 1   MSLKPPT-----NYGSATTTTNPTTTTSL-SFFSRAESLT----ATRRPWREFFNTSALS 50
           M   PPT     + G  + +  P +T +  +F SR  S      + RRPW E  + SA+S
Sbjct: 1   MMANPPTLPISDHSGGGSQSQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAIS 60

Query: 51  LPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFAR- 109
            P    DA SR RRN  YF+VNY  ++  +L LSLL HP S++V + +F  W+F Y  R 
Sbjct: 61  RPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRP 120

Query: 110 -DDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDD 168
            D P+VV  +T  D+  LG L ++T++ + LT VG+ +   L++G  +V LH +FR  +D
Sbjct: 121 SDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPED 180

Query: 169 LFLDEESAAEGGLVSVL 185
           LFLD++  A  GL+S L
Sbjct: 181 LFLDDQEPANTGLLSFL 197

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 102/170 (60%)

Query: 30  AESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHP 89
           A+S+T   RPW +F + SA S P+   DA +R  +N ++FR+NY++++  +L L+L+  P
Sbjct: 13  AQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRP 72

Query: 90  VSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVG 149
           ++++ FI V + W F YFAR++P+ +F  T+DD  V   L  +++ +L+ T V    L  
Sbjct: 73  IAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRALTT 132

Query: 150 LIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI 199
           +  GV+++ LHA+ R TDDL  D+  +  G ++S  GG        Y+ I
Sbjct: 133 VGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
147787959	206	hypothetical protein VITISV_021777 [Viti	0.994	0.961	0.603	4e-64
225453012	206	PREDICTED: PRA1 family protein E [Vitis	0.994	0.961	0.589	1e-63
224130630	212	predicted protein [Populus trichocarpa]	0.889	0.834	0.644	1e-59
449483101	213	PREDICTED: PRA1 family protein E-like [C	0.984	0.920	0.568	3e-59
449442951	213	PREDICTED: PRA1 family protein E-like [C	0.984	0.920	0.568	3e-59
255580921	216	Prenylated Rab acceptor protein, putativ	0.909	0.837	0.627	7e-54
356576710	192	PREDICTED: PRA1 family protein E-like [G	0.964	1.0	0.587	1e-50
356533639	190	PREDICTED: PRA1 family protein E-like [G	0.793	0.831	0.640	4e-48
224085589	201	predicted protein [Populus trichocarpa]	0.899	0.890	0.505	1e-45
225442317	193	PREDICTED: PRA1 family protein F2-like [	0.909	0.937	0.516	1e-42

>gi|147787959|emb|CAN73850.1| hypothetical protein VITISV_021777 [Vitis vinifera]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 161/207 (77%), Gaps = 9/207 (4%)

Query: 1   MSLKPPTNYGSATTTTN--PTTTTS--LSFFSRA----ESLTATRRPWREFFNTSALSLP 52
           MSLK P  YG+    +   P+++TS   +F SRA    ++L ATRRPWREF + SALS P
Sbjct: 1   MSLKSPAGYGTLPNASPAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSALSRP 60

Query: 53  ADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDP 112
            +Y+DA++R +RN +YFRVNYA+VMLFILF+SLLWHP SMIVF+++FV W F YF RD+P
Sbjct: 61  HNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFRDNP 120

Query: 113 VVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLD 172
           VV+F+QT+DD+ VL  L L+TV+AL+ TDVG NVLV LI+GV +VGLHA+FR T+DLFL+
Sbjct: 121 VVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDLFLN 180

Query: 173 EESAAEGGLVSVLGGTQPVRLTGYTRI 199
           EE  AEGGL+SV GG Q +R T YTR+
Sbjct: 181 EEEVAEGGLLSVAGGQQ-LRPTNYTRV 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453012|ref|XP_002264376.1| PREDICTED: PRA1 family protein E [Vitis vinifera]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 158/207 (76%), Gaps = 9/207 (4%)

Query: 1   MSLKPPTNYG----SATTTTNPTTTTSLSFFSRA----ESLTATRRPWREFFNTSALSLP 52
           MSLK P  YG    ++    + +T+   +F SRA    ++L ATRRPWREF + S LS P
Sbjct: 1   MSLKSPAGYGTLPNASAAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSVLSRP 60

Query: 53  ADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDP 112
            +Y+DA++R +RN +YFRVNYA+VMLFILF+SLLWHP SMIVF+++FV W F YF RD+P
Sbjct: 61  HNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFRDNP 120

Query: 113 VVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLD 172
           VV+F+QT+DD+ VL  L L+TV+AL+ TDVG NVLV LI+GV +VGLHA+FR T+DLFL+
Sbjct: 121 VVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDLFLN 180

Query: 173 EESAAEGGLVSVLGGTQPVRLTGYTRI 199
           EE  AEGGL+SV GG Q +R T YTR+
Sbjct: 181 EEEVAEGGLLSVAGGQQ-LRPTNYTRV 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130630|ref|XP_002328337.1| predicted protein [Populus trichocarpa] gi|222838052|gb|EEE76417.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 146/183 (79%), Gaps = 6/183 (3%)

Query: 22  TSLSFFSRA----ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVM 77
           T+L+F SR     ++L ATRRPW+E    S+   P +YNDAISR + N +YFRVNYA++ 
Sbjct: 31  TTLTFISRVSTSTQTLIATRRPWQELIKLSSFIRPNNYNDAISRIKFNVNYFRVNYAMIF 90

Query: 78  LFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLAL 137
           L ILFLSLLWHP+SMIVFIV+FV WLF YF RD PVVVFN++LDD+ VL  L LVT+LAL
Sbjct: 91  LAILFLSLLWHPISMIVFIVMFVAWLFLYFGRDGPVVVFNKSLDDRVVLCVLGLVTILAL 150

Query: 138 ILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLT-GY 196
           + T VG NVL+ LI+GVV+VG+HA+FR T+DLFLDEESA EGGL+SV+ G+QP+R T GY
Sbjct: 151 VFTHVGLNVLIALIIGVVIVGVHAAFRGTEDLFLDEESAVEGGLLSVV-GSQPLRPTMGY 209

Query: 197 TRI 199
           TRI
Sbjct: 210 TRI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483101|ref|XP_004156493.1| PREDICTED: PRA1 family protein E-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 154/213 (72%), Gaps = 17/213 (7%)

Query: 2   SLKPPTNYG---SATTTTNPTTTTSLS--------FFSRA----ESLTATRRPWREFFNT 46
           S+K  + YG   S    T PTT++           F  RA    +SL AT+RPWRE F+ 
Sbjct: 3   SVKFSSGYGAVPSQAAATIPTTSSGAPPSFPSSSSFIERAKTTTQSLIATQRPWRELFDF 62

Query: 47  SALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFY 106
           SA SLP  Y+DA++R R+N +YFRVNYA+VML I+FLSL WHP+S+IVF+++FV WLFFY
Sbjct: 63  SAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLFFY 122

Query: 107 FARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRAT 166
           F RD P+V+FNQT DDK VLG L++ T++AL+ TDVG+NVL  LI GV +VGLH++FR T
Sbjct: 123 FFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVAVVGLHSAFRIT 182

Query: 167 DDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI 199
            D FLDEE+AAEGGL+SV+G  Q  R  GYTRI
Sbjct: 183 ADHFLDEETAAEGGLLSVVGNQQQQR--GYTRI 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442951|ref|XP_004139244.1| PREDICTED: PRA1 family protein E-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 154/213 (72%), Gaps = 17/213 (7%)

Query: 2   SLKPPTNYG---SATTTTNPTTTTSLS--------FFSRA----ESLTATRRPWREFFNT 46
           S+K  + YG   S    T PTT++           F  RA    +SL AT+RPWRE F+ 
Sbjct: 3   SVKFSSGYGAVPSQAAATIPTTSSGAPPSFPSSSSFLERAKTTTQSLIATQRPWRELFDF 62

Query: 47  SALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFY 106
           SA SLP  Y+DA++R R+N +YFRVNYA+VML I+FLSL WHP+S+IVF+++FV WLFFY
Sbjct: 63  SAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLFFY 122

Query: 107 FARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRAT 166
           F RD P+V+FNQT DDK VLG L++ T++AL+ TDVG+NVL  LI GV +VGLH++FR T
Sbjct: 123 FFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVTVVGLHSAFRIT 182

Query: 167 DDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI 199
            D FLDEE+AAEGGL+SV+G  Q  R  GYTRI
Sbjct: 183 ADHFLDEETAAEGGLLSVVGNQQQQR--GYTRI 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580921|ref|XP_002531279.1| Prenylated Rab acceptor protein, putative [Ricinus communis] gi|223529112|gb|EEF31092.1| Prenylated Rab acceptor protein, putative [Ricinus communis]

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/188 (62%), Positives = 151/188 (80%), Gaps = 7/188 (3%)

Query: 18  PTTTTSLSFFSRA----ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNY 73
           PTT TSL+F SRA    +S+ ATRRPW+E  N S+ S P +Y++A+SR + N +YFRVNY
Sbjct: 30  PTTATSLTFISRATSATQSVIATRRPWKELLNPSSFSCPCNYSEAMSRVKYNVNYFRVNY 89

Query: 74  AVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVT 133
           A+V+L +LFLSLLWHPVSMIVFIVVF+ W F YF+RD P+V+FN+  DD+ VL  L LVT
Sbjct: 90  AMVVLSVLFLSLLWHPVSMIVFIVVFIAWFFLYFSRDGPIVLFNREFDDRVVLVVLGLVT 149

Query: 134 VLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVR- 192
           ++AL+LT VG NVLV L++G V+VG+H +FR T+DLFLDEESAAEGGL+SV+ G+QP+R 
Sbjct: 150 IVALVLTHVGLNVLVALMIGAVVVGIHGAFRNTEDLFLDEESAAEGGLLSVV-GSQPLRP 208

Query: 193 -LTGYTRI 199
             TGYTRI
Sbjct: 209 TTTGYTRI 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576710|ref|XP_003556473.1| PREDICTED: PRA1 family protein E-like [Glycine max]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 144/199 (72%), Gaps = 7/199 (3%)

Query: 1   MSLKPPTNYGSATTTTNPTTTTSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAIS 60
           MS  P   YG+    T   T T ++  + A S + T RPWREF + SALS P  Y+DA+ 
Sbjct: 1   MSHIPTAGYGTLAGATPTPTPTGITPSTAATS-SVTPRPWREFLDLSALSRPYSYDDAMI 59

Query: 61  RARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTL 120
           R RRN SYFR NYA V L I+FLSLLWHP+SMIVF++V V W +FYF+RD P+VVFNQTL
Sbjct: 60  RVRRNLSYFRFNYAAVTLLIVFLSLLWHPISMIVFLLVLVAWYYFYFSRDVPLVVFNQTL 119

Query: 121 DDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGG 180
           DD+ VL  L L+TV++L+ T VG NVL+ LIV VVLVGLHA+FR T+DLFLDEES+    
Sbjct: 120 DDRTVLCVLGLLTVVSLVSTHVGLNVLLSLIVSVVLVGLHAAFRVTEDLFLDEESS---- 175

Query: 181 LVSVLGGTQPVRLTGYTRI 199
           L+SV+ GTQP+R T YT I
Sbjct: 176 LLSVV-GTQPIR-TNYTPI 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533639|ref|XP_003535369.1| PREDICTED: PRA1 family protein E-like [Glycine max]

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 126/164 (76%), Gaps = 6/164 (3%)

Query: 36  TRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVF 95
           T RPWREF + SALS P  Y+DA+ R RRN S+FR NYA + L I+FLSLLWHPVSMIVF
Sbjct: 33  TPRPWREFLDLSALSCPYSYDDAMIRVRRNLSHFRFNYAAITLLIVFLSLLWHPVSMIVF 92

Query: 96  IVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVV 155
           ++V V W + YF+RD  +VVFNQTLDD+ VL  L L+TV AL+ T VG NVL+ LIV VV
Sbjct: 93  LLVLVAWYYLYFSRDGLLVVFNQTLDDRTVLCVLGLLTVAALVSTHVGLNVLLSLIVAVV 152

Query: 156 LVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRLTGYTRI 199
           LVGLHA+FR T+DLFLDEES+    L+SV+ GTQP+R T YT I
Sbjct: 153 LVGLHAAFRVTEDLFLDEESS----LLSVV-GTQPLR-TNYTPI 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085589|ref|XP_002307629.1| predicted protein [Populus trichocarpa] gi|222857078|gb|EEE94625.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 131/186 (70%), Gaps = 7/186 (3%)

Query: 18  PTTTTSLSFFSRAESLT----ATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNY 73
           P+     +F +R+ + T    ATRRPWRE    S+ + P  + +A  R +RN  YFRVNY
Sbjct: 19  PSAAAPSTFLTRSANTTTNFFATRRPWRELIEFSSFTRPLSFGEATIRVKRNLYYFRVNY 78

Query: 74  AVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVT 133
            +++L ILFLSLLWHP+SMIVF+VVFV W F YF RD P+V+F++ +DD+ VLG L++VT
Sbjct: 79  TMIILVILFLSLLWHPLSMIVFLVVFVAWFFLYFFRDQPLVIFHRPIDDRVVLGLLSIVT 138

Query: 134 VLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLVSVLGGTQPVRL 193
           ++ALI T V  NVLV +++G  +V LHA+FR T++L+LDE   A+ GL SV+G   P+R 
Sbjct: 139 IIALIFTHVWLNVLVSVLIGAAVVVLHAAFRGTENLYLDEHDLADEGLFSVVGS--PMR- 195

Query: 194 TGYTRI 199
            GYTR+
Sbjct: 196 DGYTRV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442317|ref|XP_002279772.1| PREDICTED: PRA1 family protein F2-like [Vitis vinifera]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 138/186 (74%), Gaps = 5/186 (2%)

Query: 7   TNYGSATTTTNPTTTTSLSFFSRAE----SLTATRRPWREFFNTSALSLPADYNDAISRA 62
           T YG+   T++   + SL F SRA+    S  ATRRPW+E FN  ++ LP ++ DA++R 
Sbjct: 2   TTYGT-IPTSSAGDSPSLEFVSRAKERLRSGLATRRPWKEMFNIRSIGLPINFPDAVNRV 60

Query: 63  RRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDD 122
           + N S+FR+NY +++L ILFLSLLWHP+S+IVFIV+  +WLF YF RD+P+VVF++T+DD
Sbjct: 61  KTNISFFRMNYVIIVLLILFLSLLWHPISLIVFIVMMAVWLFLYFLRDEPLVVFHRTIDD 120

Query: 123 KFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAEGGLV 182
           + VL  L ++T++ L+LT    N+LV L++GV +V LHA+FR TDDLFLDEE+A+ GGL+
Sbjct: 121 RVVLIVLLILTIVFLLLTHATLNILVSLLIGVAVVVLHAAFRKTDDLFLDEEAASAGGLL 180

Query: 183 SVLGGT 188
           +  G T
Sbjct: 181 TTPGST 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2025615	209	PRA1.E "AT1G08770" [Arabidopsi	0.989	0.942	0.360	1.9e-26
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.889	0.936	0.375	5.2e-26
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.889	0.941	0.322	3.4e-22
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.748	0.792	0.364	2.1e-20
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.758	0.686	0.359	4.4e-20
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.824	0.784	0.323	1.9e-19
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.783	0.718	0.345	5.1e-19
TAIR|locus:2018359	182	MPI7 "CAMV movement protein in	0.793	0.868	0.284	1.7e-18
TAIR|locus:2007948	180	PRA1.F1 "AT1G17700" [Arabidops	0.713	0.788	0.314	3.6e-18
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.804	0.751	0.312	5.8e-18

TAIR|locus:2025615 PRA1.E "AT1G08770" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 76/211 (36%), Positives = 102/211 (48%)

Query:     1 MSLKPPT-NYGSA-------XXXXXXXXXXSLSFFSR--AESLTATRRPWREFFNTSALS 50
             M+ KPP   YG A                 +LS  ++   +S+  T RPWRE  + SALS
Sbjct:     1 MNQKPPPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILDLSALS 60

Query:    51 LPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMXXXXXXXXXXXXXYFARD 110
             LP  Y++A++  + N SYFR NYA+ +L I+FL L++HP+SM             YF+RD
Sbjct:    61 LPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRD 120

Query:   111 --DPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASFRATDD 168
               D +V+  + +DDK VL                                 H +FR TDD
Sbjct:   121 ANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDD 180

Query:   169 LFLDEESAAEGGLVSVLGGTQPVRLTGYTRI 199
             LFLDEESA  GGLVS   G +P   + YT I
Sbjct:   181 LFLDEESARRGGLVSAGSGNRPP--SSYTPI 209

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 69/184 (37%), Positives = 92/184 (50%)

Query:     7 TNYGSAXXXXXXXXXXSLSFFSRAE----SLTATRRPWREFFNTSALSLPADYNDAISRA 62
             TNYG+            L + SRA+    S  ATRRPW+  F+  +++LP  + DAISR 
Sbjct:     2 TNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRI 61

Query:    63 RRNASYFRVNYAVVMLFILFLSLLWHPVSMXXXXXXXXXXXXXYFARDDPVVVFNQTLDD 122
             + N  YFR NYA+ +LFILFLSLL+HP S+             YF RD+P+VVF   +DD
Sbjct:    62 KTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDD 121

Query:   123 KFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASFRATDDLFLDEESAA---EG 179
             + VL                                 HA+ R +D+LFLDEE+AA     
Sbjct:   122 RTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEAS 181

Query:   180 GLVS 183
             GL+S
Sbjct:   182 GLMS 185

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 59/183 (32%), Positives = 84/183 (45%)

Query:     7 TNYGSAXXXXXXXXXXSLSFFSRAESLT----ATRRPWREFFNTSALSLPADYNDAISRA 62
             TNYG+            +   SRA+       ATRR WR  F+  ++ LP   +DA +R 
Sbjct:     2 TNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRI 61

Query:    63 RRNASYFRVNYAVVMLFILFLSLLWHPVSMXXXXXXXXXXXXXYFARDDPVVVFNQTLDD 122
             + N +YFR+NYA+V+L ++F SL+WHP S+             YF RD+P+ +F   +DD
Sbjct:    62 KTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDD 121

Query:   123 KFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASFRATDDLFLDEESAAE--GG 180
             + VL                                 H+  R T+DLFLDEE+A     G
Sbjct:   122 RTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAATTETSG 181

Query:   181 LVS 183
             L S
Sbjct:   182 LTS 184

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 55/151 (36%), Positives = 70/151 (46%)

Query:    35 ATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMXX 94
             ATRR WR  F+  +  LP   +D  SR + N +YFR NYA+V+L ++F SL+WHP S+  
Sbjct:    34 ATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIV 93

Query:    95 XXXXXXXXXXXYFARDDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXX 154
                        YF RD P+ VF   +DD+ VL                            
Sbjct:    94 FTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGA 153

Query:   155 XXXXXHASFRATDDLFLDEESAAE--GGLVS 183
                  HA  R TDDLFLDEE+A     GL S
Sbjct:   154 VLVLIHAVIRKTDDLFLDEEAATTETSGLTS 184

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 55/153 (35%), Positives = 70/153 (45%)

Query:    37 RRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMXXXX 96
             RRPW E  + SALS P   +DA  R R+N SYF+VNY  V   I+  SL+ HP S+    
Sbjct:    54 RRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLL 113

Query:    97 XXXXXXXXXYFAR--DDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXX 154
                      Y  R  D P+V+F +T  D+  LGC                          
Sbjct:   114 CLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGV 173

Query:   155 XXXXXHASFRATDDLFLDEESAAEGGLVSVLGG 187
                  H +FRA +DLFLDE+  A  G +S LGG
Sbjct:   174 ALICAHGAFRAPEDLFLDEQEPAATGFLSFLGG 206

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 55/170 (32%), Positives = 79/170 (46%)

Query:    25 SFFSR-AESLT---ATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFI 80
             +FFSR + S+    + RRPW E  + S+++ P    DA+SR R+N +YF+VNY  ++  +
Sbjct:    28 TFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLV 87

Query:    81 LFLSLLWHPVSMXXXXXXXXXXXXXYFAR--DDPVVVFNQTLDDKFVLGCXXXXXXXXXX 138
             L  SL  HP+S+             Y  R  D P+VVF +T  D+  L            
Sbjct:    88 LAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVF 147

Query:   139 XXXXXXXXXXXXXXXXXXXXXHASFRATDDLFLDEESAAEGGLVSVLGGT 188
                                  H +F   DDLFLDE+  A  GL+S LGG+
Sbjct:   148 MTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLGGS 197

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 55/159 (34%), Positives = 72/159 (45%)

Query:    31 ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPV 90
             +SL+  RRPW E  + SA+S P    DA SR RRN  YF+VNY  ++  +L LSLL HP 
Sbjct:    42 QSLSQ-RRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPF 100

Query:    91 SMXXXXXXXXXXXXXYFAR--DDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXX 148
             S+             Y  R  D P+VV  +T  D+  LG                     
Sbjct:   101 SLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTS 160

Query:   149 XXXXXXXXXXXHASFRATDDLFLDEESAAEGGLVSVLGG 187
                        H +FR  +DLFLD++  A  GL+S L G
Sbjct:   161 ALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLSFLSG 199

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2018359 MPI7 "CAMV movement protein interacting protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/158 (28%), Positives = 75/158 (47%)

Query:    30 AESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHP 89
             A+S+T   RPW +F + SA S P+   DA +R  +N ++FR+NY++++  +L L+L+  P
Sbjct:    13 AQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRP 72

Query:    90 VSMXXXXXXXXXXXXXYFARDDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXXX 149
             +++             YFAR++P+ +F  T+DD  V                        
Sbjct:    73 IAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRALTT 132

Query:   150 XXXXXXXXXXHASFRATDDLFLDEESAAEGGLVSVLGG 187
                       HA+ R TDDL  D+  +  G ++S  GG
Sbjct:   133 VGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGG 170

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046739 "spread of virus in multicellular host" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2007948 PRA1.F1 "AT1G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 45/143 (31%), Positives = 68/143 (47%)

Query:    35 ATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMXX 94
             ATRRPW++  +  + + P      I+R R N  YF+ NY +V+LF +FLSL+W+P S+  
Sbjct:    34 ATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLV 93

Query:    95 XXXXXXXXXXXYFARDDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXXXXXXXXXXX 154
                        YF RD+P+ VF++ +D + VL                            
Sbjct:    94 LLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGA 153

Query:   155 XXXXXHASFRATDDLF-LDEESA 176
                  HA+ R T+DLF  DEE++
Sbjct:   154 LAVLSHAAVRKTEDLFQTDEETS 176

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/163 (31%), Positives = 74/163 (45%)

Query:    28 SRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLW 87
             S  ESL+  RRPW E  + S+ + P    D+ SR R+N +YF+VNY+ ++  +L  SLL 
Sbjct:    38 SLRESLSQ-RRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLS 96

Query:    88 HPVSMXXXXXXXXXXXXXYFAR--DDPVVVFNQTLDDKFVLGCXXXXXXXXXXXXXXXXX 145
             HP S+             Y  R  D P+V+F ++  D+  L                   
Sbjct:    97 HPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSL 156

Query:   146 XXXXXXXXXXXXXXHASFRATDDLFLDEESAAEGGLVSVLGGT 188
                           H +FR  DDLFLDE+  A  GL+S +G +
Sbjct:   157 LTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGNS 199

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FRR1	PRA1E_ARATH	No assigned EC number	0.5329	0.8944	0.8516	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007447001 SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (206 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam03208	153	pfam03208, PRA1, PRA1 family protein	4e-50
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	1e-06

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  158 bits (403), Expect = 4e-50
 Identities = 71/153 (46%), Positives = 98/153 (64%), Gaps = 1/153 (0%)

Query: 29  RAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWH 88
             +S  A  RPW EFF+ S  S P  +++A SR RRN  YF+ NYA+V+L +L LSLL +
Sbjct: 1   SVQSRLAPLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTN 60

Query: 89  PVSMIVFIVVFVLWLFFYFARDD-PVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVL 147
           P+S+IV +V+   WLF YF R + P+V+F +T  D+ VL  L +V+V  L LT  G+ +L
Sbjct: 61  PLSLIVLLVLVAAWLFLYFLRPNEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVLL 120

Query: 148 VGLIVGVVLVGLHASFRATDDLFLDEESAAEGG 180
             L  G++LV  HA+FR  +DLFLDE  A   G
Sbjct: 121 WLLGAGLLLVLAHAAFRLRNDLFLDENEAESIG 153

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 19 TTTTSLSFFSRAESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVML 78
            T S  + S  ++L       REFFN   +S+P ++N+A SR   N   F  NY  ++ 
Sbjct: 12 EKTFSEIYRSIKQALGDKDVT-REFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIA 70

Query: 79 FILFLSLLWHPVSMIVFIVV 98
           +    LL++ + +IV  +V
Sbjct: 71 ILTIYYLLYNLLLLIVIGIV 90

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.9
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.89

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-49  Score=322.83  Aligned_cols=181  Identities=49%  Similarity=0.811  Sum_probs=166.3

Q ss_pred             CCCCCCCcCCCCCC-CCchhhHHhhh----hhhcCCCCChhhhhCCCCCCCCCChHHHHHHHHHhHHhHHHHHHHHHHHH
Q 029094            6 PTNYGSATTTTNPT-TTTSLSFFSRA----ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFI   80 (199)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~RPw~eF~d~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~~i~~~~   80 (199)
                      |+++|+.|+++.+. ..+.++..+|.    +..+++.|||+||+|.++|++|++++|+.+|+++|+.|||.||.+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~   80 (187)
T KOG3142|consen    1 MTNQGAPPPSSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAIL   80 (187)
T ss_pred             CCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            56788887655443 22233455544    77789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 029094           81 LFLSLLWHPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLH  160 (199)
Q Consensus        81 ~~i~ll~~P~~Li~l~~~~~~~~~i~~~~~~p~~i~g~~~~~~~v~~~l~~vs~~ll~~~~~~~~l~~~l~~s~~vvl~H  160 (199)
                      ..+++++||++|+++++++++|+++|+.||+|++++||+++++++++++++++++++|+++++.+++|++++|+++|++|
T Consensus        81 ~~~sLi~~P~~Livl~~lv~~w~~LY~~rd~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~H  160 (187)
T KOG3142|consen   81 LFLSLITHPLSLIVLLALVAAWLFLYFLRDEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIH  160 (187)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHheeeecCCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccccccccCCceeecc
Q 029094          161 ASFRATDDLFLDEESAAEGGLVSVLG  186 (199)
Q Consensus       161 A~~R~~~~~~~de~~~~~~~~~~~~~  186 (199)
                      |+||++||+|+||||+..+|+.|+.+
T Consensus       161 aafr~~ddLF~dee~~~~~gl~s~~~  186 (187)
T KOG3142|consen  161 AAFRNTDDLFLDEEEAAASGLLSFSS  186 (187)
T ss_pred             HHHhChHhhhhhhhhcccccccccCC
Confidence            99999999999999999889998764

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=1.2e-37  Score=248.45  Aligned_cols=148  Identities=38%  Similarity=0.681  Sum_probs=139.0

Q ss_pred             hhhcCCCCChhhhhCCCCCCCCCChHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 029094           31 ESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFARD  110 (199)
Q Consensus        31 ~~~l~~~RPw~eF~d~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~~i~~~~~~i~ll~~P~~Li~l~~~~~~~~~i~~~~~  110 (199)
                      +++++++|||+||||.++|+.|+|.+++.+|+++|+.|||+||++++++++++++++||..++++++++++|++++..++
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             --CCeEeccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccc
Q 029094          111 --DPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEESAAE  178 (199)
Q Consensus       111 --~p~~i~g~~~~~~~v~~~l~~vs~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~~~~de~~~~~  178 (199)
                        +|+.+.|+++++++++.++.+++++++++++++.+++|++++++++|++||++|+||+++.+|+|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~  151 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIES  151 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhc
Confidence              78999999999999999999999999999999999999999999999999999999988777776653

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-23  Score=165.39  Aligned_cols=144  Identities=22%  Similarity=0.189  Sum_probs=131.1

Q ss_pred             hhhhcCCCCChhhhhCCCCCCCCCChHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 029094           30 AESLTATRRPWREFFNTSALSLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFAR  109 (199)
Q Consensus        30 ~~~~l~~~RPw~eF~d~~~fs~P~s~~~~~~Ri~~Nl~yF~~NY~~i~~~~~~i~ll~~P~~Li~l~~~~~~~~~i~~~~  109 (199)
                      .++.++..|.-+||||..|.++|++++|+++|+-.|+.||+.||..+...+..|.+++||.+++++.+.+++-+.+.+.|
T Consensus        22 ~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~kl~  101 (169)
T COG5130          22 IKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRKLR  101 (169)
T ss_pred             HHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhhcc
Confidence            35668889999999999999999999999999999999999999999999999999999999998888888777788889


Q ss_pred             CCCeEeccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcccCCCCCcccc
Q 029094          110 DDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDDLFLDEE  174 (199)
Q Consensus       110 ~~p~~i~g~~~~~~~v~~~l~~vs~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~~~~de~  174 (199)
                      ++|++..-+..+..+.|++++.+.+++.++.+...+++|..++|.++++.||++..++-. .|+|
T Consensus       102 g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e-~~fe  165 (169)
T COG5130         102 GRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE-KDFE  165 (169)
T ss_pred             cCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc-cchh
Confidence            999888777778888899999999999999999999999999999999999999998654 3443

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-22  Score=162.88  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=109.4

Q ss_pred             hhhcCCCCChhhhh-CCCCCCCC--CChHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 029094           31 ESLTATRRPWREFF-NTSALSLP--ADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVF--VLWLFF  105 (199)
Q Consensus        31 ~~~l~~~RPw~eF~-d~~~fs~P--~s~~~~~~Ri~~Nl~yF~~NY~~i~~~~~~i~ll~~P~~Li~l~~~~--~~~~~i  105 (199)
                      ..+++++|.|+||+ +..||.+|  +|+++|++|+.+|+.|||+||+++++.++.+..+.+|..++..++..  +....+
T Consensus        13 ~v~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~li   92 (188)
T KOG4050|consen   13 GVELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLI   92 (188)
T ss_pred             CCCCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999 69999999  89999999999999999999999999999999999999877643321  111122


Q ss_pred             HHh-CCCCeEeccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcccCCC
Q 029094          106 YFA-RDDPVVVFNQTLDDKFVLGCLTLVTVLALILTDVGTNVLVGLIVGVVLVGLHASFRATDD  168 (199)
Q Consensus       106 ~~~-~~~p~~i~g~~~~~~~v~~~l~~vs~~ll~~~~~~~~l~~~l~~s~~vvl~HA~~R~~~~  168 (199)
                      +.. .++.++...++++ ...+++...+++++++++++..++.+++..+++++++||++|.|+-
T Consensus        93 wa~~~~a~~krmr~~hp-~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRni  155 (188)
T KOG4050|consen   93 WAASADANIKRMRTDHP-LVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRNI  155 (188)
T ss_pred             HHHhccHHHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            222 2333333334433 4445668888999999999999999999999999999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 50/139 (35%)

Query: 50  SLPADYNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVSMIVFIVVFVLWLFFYFAR 109
           ++    +   +  RR                  L    +   ++V        L      
Sbjct: 222 NIKLRIHSIQAELRR-----------------LLKSKPYENCLLV--------L------ 250

Query: 110 DDPVVVFNQTLDDKFVLGCLTLVTVLALILT-DVG-TNVLVGLIVGVVLVGLHASFRATD 167
            +   V N    + F L C  L+T      T     T+ L       + +  H       
Sbjct: 251 LN---VQNAKAWNAFNLSCKILLT------TRFKQVTDFLSAATTTHISLDHH------S 295

Query: 168 DLFLDEESAAEGGLVSVLG 186
                +E   +  L+  L 
Sbjct: 296 MTLTPDEV--KSLLLKYLD 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00