Citrus Sinensis ID: 029103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGGGRRGFCCS
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEEEccEEEEccEEEEEEEEEccccccccccccHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHcHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
martsnknIQVKLVLLgdmgtgktSLVLRFVKgqffdfqestigaAFFTQVLSLNEVTIkfdiwdtagqeryhslapmyyrGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAevnpsrqtgmklhteshgggrrgfccs
Flexible Loop (DISEMBL)
martsnkniqvklvllgdmgtgKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQElqrqgnpnlIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAevnpsrqtgmklhteshgggrrgfccs
Low Complexity Region (SEG)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGaaaavvvYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGGGRRGFCCS
Disordered region (IsUnstruct)
********IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL*******************LSFL******AHNVNELFYEIAKRL****************************
Disordered Region (DISOPRED)
*****NK***VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA***************************FCC*
Disordered Region (DISEMBL)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKL***************
Disordered Region (DISPRO)
****SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGGGRRGFCCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
P31583	200	Ras-related protein RHN1	N/A	no	1.0	0.995	0.67	8e-78
P29687	200	Ras-related protein Rab5	N/A	no	1.0	0.995	0.655	2e-76
P31582	200	Ras-related protein RABF2	yes	no	1.0	0.995	0.66	2e-75
Q9SN68	200	Ras-related protein RABF2	no	no	1.0	0.995	0.645	9e-74
Q86JP3	201	Ras-related protein Rab-5	yes	no	0.979	0.970	0.595	3e-66
P51147	216	Ras-related protein Rab-5	yes	no	0.964	0.888	0.597	9e-65
Q5R7L7	216	Ras-related protein Rab-5	yes	no	0.974	0.898	0.582	2e-64
P51148	216	Ras-related protein Rab-5	yes	no	0.974	0.898	0.582	2e-64
Q58DS9	216	Ras-related protein Rab-5	yes	no	0.974	0.898	0.577	4e-64
P35278	216	Ras-related protein Rab-5	yes	no	0.974	0.898	0.582	4e-64

>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1

 Score =  289 bits (740), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 160/200 (80%), Gaps = 1/200 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA +S+ N+  KLVLLGDMG GK+SLV+RFVKGQF +FQESTIGAAFF+  L++N  T+K
Sbjct: 1   MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDITS DSF RAKKWVQELQ+QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
             NK DLE++RKV  EE  LYA+ENGL F+ETSAK+A NVN +FYEIAKRL    P++  
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNP 180

Query: 180 TGMKLHTESHGGGRRGFCCS 199
            GM L   +  G R   CC+
Sbjct: 181 AGMVLVDRAAEGTRATSCCT 200

Protein transport. Probably involved in vesicular traffic.
Nicotiana plumbaginifolia (taxid: 4092)

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 158/200 (79%), Gaps = 1/200 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   + N+  KLVLLGDMG GK+SLV+RFVKGQF +FQESTIGAAFF+  +S+N  T+K
Sbjct: 1   MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDITS +S  RAKKWVQELQ+QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
             NK DLE+KRKV  EE  LYA+ENGL F+ETSAK+A NVN++FYEIAKRL    P++  
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNP 180

Query: 180 TGMKLHTESHGGGRRGFCCS 199
            GM L  +   G +   CC+
Sbjct: 181 AGMVLEDKPAQGSQAASCCT 200

Protein transport. Probably involved in vesicular traffic.

Nicotiana tabacum (taxid: 4097)

>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1

 Score =  281 bits (718), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 156/200 (78%), Gaps = 1/200 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA + NKNI  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 1   MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+DIT+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
             NK DL + RKV  EE E+YAQEN L F+ETSAK+A NV ++FYEIAKRL  V P+   
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query: 180 TGMKLHTESHGGGRRGFCCS 199
           TGM L            CC+
Sbjct: 181 TGMVLPNGPGATAVSSSCCA 200

Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1 SV=1

 Score =  276 bits (705), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 156/200 (78%), Gaps = 1/200 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 1   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEIA+RL  V P+   
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query: 180 TGMKLHTESHGGGRRGFCCS 199
           TGM L   +        CC+
Sbjct: 181 TGMVLPDRAMDRAVSSSCCA 200

Endosomal protein that may be involved in endocytosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 151/198 (76%), Gaps = 3/198 (1%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           +NK  Q KLVLLG+   GK+SLVLRFV+G F D+QESTIGAAF  Q + LN+ T+KF+IW
Sbjct: 4   NNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIW 63

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124
           DTAGQERYH+LAPMYYRGA AA+VVYDI S DSFERA KWV+ELQRQG+PN+++ L  NK
Sbjct: 64  DTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNK 123

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKL 184
           +DL  KRKV+  E + YA+ENGL F+ETSAK++ NVNELF EIAK+L +   +R    ++
Sbjct: 124 LDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRV 183

Query: 185 ---HTESHGGGRRGFCCS 199
                ++   G++  CC+
Sbjct: 184 AIAPIDNGNTGKKNKCCN 201

Required for the fusion of plasma membranes and early endosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 146/201 (72%), Gaps = 9/201 (4%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL-------AEVNPSR 178
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L       A   PSR
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSR 196

Query: 179 QTGMKLHTESHGGGRRGFCCS 199
             G+ L   S     R  CCS
Sbjct: 197 NRGVDLQENSPAS--RSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Canis familiaris (taxid: 9615)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 145/199 (72%), Gaps = 5/199 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P   TG    
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196

Query: 184 ---LHTESHGGGRRGFCCS 199
              +  + +    R  CCS
Sbjct: 197 NRGVDLQENNPASRSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 145/199 (72%), Gaps = 5/199 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P   TG    
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196

Query: 184 ---LHTESHGGGRRGFCCS 199
              +  + +    R  CCS
Sbjct: 197 NRGVDLQENNPASRSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score =  244 bits (622), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 145/199 (72%), Gaps = 5/199 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
           DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  IAK+L +  P    G    
Sbjct: 137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGR 196

Query: 184 ---LHTESHGGGRRGFCCS 199
              +  + +    R  CCS
Sbjct: 197 NRGVDLQENNPASRSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score =  243 bits (621), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 143/199 (71%), Gaps = 5/199 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 17  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 77  TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLH 185
           DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P    G    
Sbjct: 137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGR 196

Query: 186 T-----ESHGGGRRGFCCS 199
           T     +      R  CCS
Sbjct: 197 TRGVDLQESNPASRSQCCS 215

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
225445266	200	PREDICTED: ras-related protein RHN1 isof	1.0	0.995	0.849	8e-95
224142139	199	predicted protein [Populus trichocarpa]	1.0	1.0	0.839	4e-93
255546521	199	protein with unknown function [Ricinus c	1.0	1.0	0.839	5e-93
356511351	199	PREDICTED: ras-related protein RHN1-like	0.994	0.994	0.8	2e-89
356527789	199	PREDICTED: ras-related protein RHN1-like	0.994	0.994	0.795	4e-88
357521023	190	Ras-related protein Rab-5C [Medicago tru	0.934	0.978	0.817	6e-87
224070895	200	predicted protein [Populus trichocarpa]	1.0	0.995	0.748	4e-86
359482942	199	PREDICTED: ras-related protein RHN1-like	0.994	0.994	0.758	5e-85
356556138	200	PREDICTED: ras-related protein RABF2b-li	1.0	0.995	0.713	5e-79
168054193	201	Rab5/RabF-family small GTPase [Physcomit	1.0	0.990	0.676	4e-78

>gi|225445266|ref|XP_002284542.1| PREDICTED: ras-related protein RHN1 isoform 1 [Vitis vinifera] gi|359484588|ref|XP_003633124.1| PREDICTED: ras-related protein RHN1 isoform 2 [Vitis vinifera] gi|297738837|emb|CBI28082.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 169/199 (84%), Positives = 178/199 (89%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NKNIQ KLVLLGDMGTGKTSLVLRFVKGQF+DFQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARTGNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFYDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL+M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLLMIL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK DLE KR+V+NE+GE YA+ENGL F ETSAK+A NVNELFYEIAK LA+  PSR  
Sbjct: 121 VANKADLETKREVENEKGEQYAKENGLLFFETSAKTAQNVNELFYEIAKNLAKACPSRPG 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           G+KLH  S   GRR FCCS
Sbjct: 181 GIKLHRRSQERGRRLFCCS 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142139|ref|XP_002324416.1| predicted protein [Populus trichocarpa] gi|222865850|gb|EEF02981.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 175/199 (87%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART + NIQ KLVLLGDMGTGKTSLVLRFVKGQF +FQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV ELQRQGNPNLIMFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           V NKVDL++KRKV  EEGE YA+ENG+ FLETSAK+A NVNELFYEIAKRLA+  PSR  
Sbjct: 121 VGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRLAKKAPSRPI 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           GMKLH       RR FCCS
Sbjct: 181 GMKLHRRPQETRRRMFCCS 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546521|ref|XP_002514320.1| protein with unknown function [Ricinus communis] gi|223546776|gb|EEF48274.1| protein with unknown function [Ricinus communis]

 Score =  345 bits (885), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 175/199 (87%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR +NKNIQ KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE TIK
Sbjct: 1   MARPNNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS DSFERAK+WV ELQRQGNPNLIMFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSTDSFERAKRWVLELQRQGNPNLIMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
            ANKVDL +KRKV +EEGE YA+ENGL FLETSAK+A NVNELFYEIAK+LA+  PSR T
Sbjct: 121 AANKVDLGDKRKVASEEGEQYAKENGLVFLETSAKTAQNVNELFYEIAKKLAKAAPSRPT 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           GMKL        R  FCCS
Sbjct: 181 GMKLQNRQPERSRGMFCCS 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511351|ref|XP_003524390.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/200 (80%), Positives = 178/200 (89%), Gaps = 2/200 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NK++Q KLVLLGDMG GKTSLVLRFVKG+F ++QESTIGAAFFT VLSLNE T+K
Sbjct: 1   MARTRNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQESTIGAAFFTHVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDITSMDSF RAKKWV+E+QRQ N +L MFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANSSLTMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK DLE++RKV+ EEGE YA+ENGLSFLETSAK+A NVNELFYEIAKRL + NPSRQ+
Sbjct: 121 VANKADLEDERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIAKRLVKANPSRQS 180

Query: 181 GMKLHTESHGGGRRGF-CCS 199
           GMKLHT   G  RRGF CC+
Sbjct: 181 GMKLHTRP-GETRRGFLCCT 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527789|ref|XP_003532489.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 178/200 (89%), Gaps = 2/200 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MART NK++Q KLVLLGDMG GKTSLVLRFVKG+F ++Q+STIGAAFFTQVLSLNE T+K
Sbjct: 1   MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQDSTIGAAFFTQVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDITSMDSF RAKKWV+E+ RQGN   +MFL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVLRQGNCQNVMFL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK DLE +RKV+ EEGE YA+ENGLSFLETSAK+A NVNELFYEIAKRLA+ NPSRQ+
Sbjct: 121 VANKADLEAERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIAKRLAKANPSRQS 180

Query: 181 GMKLHTESHGGGRRG-FCCS 199
           GMKLH  + G  RRG FCC+
Sbjct: 181 GMKLHNRA-GETRRGFFCCT 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521023|ref|XP_003630800.1| Ras-related protein Rab-5C [Medicago truncatula] gi|355524822|gb|AET05276.1| Ras-related protein Rab-5C [Medicago truncatula]

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 168/186 (90%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
           VLLGDMGTGKTSLVLRFVKGQF ++QESTIGAAFFTQVLSLNE T+KFDIWDTAGQERYH
Sbjct: 5   VLLGDMGTGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYH 64

Query: 74  SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133
           SLAPMYYRG+AAA+VVYDITSMDSF RAKKWV+E+QRQ NPNLIM LVANK DLE++RKV
Sbjct: 65  SLAPMYYRGSAAAIVVYDITSMDSFVRAKKWVREVQRQANPNLIMLLVANKADLEDQRKV 124

Query: 134 KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGGGR 193
            NEEGE YA+ENG+SF ETSAK+A NVNELFYEIAKRLA+ NPSRQTG+KLH  +    R
Sbjct: 125 GNEEGEEYAKENGMSFFETSAKTAQNVNELFYEIAKRLAKANPSRQTGIKLHGRTQETRR 184

Query: 194 RGFCCS 199
           R FCC+
Sbjct: 185 RLFCCA 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070895|ref|XP_002303285.1| predicted protein [Populus trichocarpa] gi|222840717|gb|EEE78264.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 149/199 (74%), Positives = 173/199 (86%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR  NK IQ KLVLLGDMGTGKTSLVLRFVKGQFFD QE TIGAAFFTQ+LSL E T+K
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSLVLRFVKGQFFDHQEPTIGAAFFTQILSLTEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAV+VYDI+SMD+F RAK+WVQELQRQGNP ++M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVIVYDISSMDTFVRAKRWVQELQRQGNPKMVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK+DL+ KR+V+NE+GE ++QENG+ F+ETSAK+A N+NELFYEIAKRLA+  PS+ T
Sbjct: 121 VANKLDLDSKREVQNEDGEQFSQENGMFFMETSAKTAQNINELFYEIAKRLAKAYPSKST 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           G+ L+ E+    R  FCCS
Sbjct: 181 GVNLNDETESRTRNLFCCS 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482942|ref|XP_002284702.2| PREDICTED: ras-related protein RHN1-like [Vitis vinifera] gi|297743285|emb|CBI36152.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 151/199 (75%), Positives = 173/199 (86%), Gaps = 1/199 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR SNKNIQ KLVL+GDMGTGKTSLVLRFVKGQFF+ QE TIGAAFFTQ+LSLNE T+K
Sbjct: 1   MARPSNKNIQAKLVLVGDMGTGKTSLVLRFVKGQFFEHQEPTIGAAFFTQLLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI+++D+F RAKKWVQELQ+QGN NL+M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNVDTFVRAKKWVQELQKQGNKNLVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK DLE KR+V  +EGE  ++ENG+ F+ETSAK++ N+NELFYEIAKRLA   PS+ +
Sbjct: 121 VANKCDLESKREVNTQEGEKLSEENGMFFIETSAKTSLNINELFYEIAKRLAIAQPSQPS 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           GM LH E+   GRR FCCS
Sbjct: 181 GMNLH-ETENSGRRLFCCS 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556138|ref|XP_003546384.1| PREDICTED: ras-related protein RABF2b-like [Glycine max]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 163/199 (81%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MAR  NK IQ KLVLLGDMGTGKTS+ LRFVKG FF  QE TIGAAFFTQ+LSL+E T+K
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSIALRFVKGHFFPNQEPTIGAAFFTQILSLSEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDI+S+D+F RAKKWVQELQ  GN   +M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDISSVDTFVRAKKWVQELQTHGNQKSVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           VANK DLE KR+V+ E GE +AQENG+ ++ETSAK+A N+NELFYEIAKRLA   P + T
Sbjct: 121 VANKSDLEPKREVEAEVGEQFAQENGMFYMETSAKTAENINELFYEIAKRLARALPPKPT 180

Query: 181 GMKLHTESHGGGRRGFCCS 199
           GM L+++    GR  FCCS
Sbjct: 181 GMNLNSDIQDRGRNYFCCS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168054193|ref|XP_001779517.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens] gi|162669099|gb|EDQ55693.1| Rab5/RabF-family small GTPase [Physcomitrella patens subsp. patens]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 136/201 (67%), Positives = 164/201 (81%), Gaps = 2/201 (0%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA T   ++Q KLVLLGDMG GK+SL LRFVKGQFFD+QESTIGAAF TQ L++NE T+K
Sbjct: 1   MATTGANHMQAKLVLLGDMGAGKSSLALRFVKGQFFDYQESTIGAAFLTQTLAVNETTVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDIT+ DSF RAKKWVQELQRQGNPNL+M L
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFGRAKKWVQELQRQGNPNLVMAL 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
             NK DL  KRK++ EEG+ YA+ENGL F+ETSAK++ NVNELFYEIA++L +  P++ +
Sbjct: 121 AGNKADLSSKRKIEAEEGQSYAEENGLFFMETSAKTSQNVNELFYEIARKLPKAQPAQAS 180

Query: 181 GMKLH--TESHGGGRRGFCCS 199
           GM L   + S  G  +  CC+
Sbjct: 181 GMSLTDGSTSRLGPAKSTCCA 201

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2153202	200	RHA1 "RAB homolog 1" [Arabidop	1.0	0.995	0.635	6e-64
TAIR|locus:2123010	200	ARA7 [Arabidopsis thaliana (ta	1.0	0.995	0.62	8.8e-63
DICTYBASE|DDB_G0271984	201	rab5A "Rab GTPase" [Dictyostel	0.979	0.970	0.580	3.6e-57
UNIPROTKB|P51148	216	RAB5C "Ras-related protein Rab	0.974	0.898	0.557	4.8e-55
UNIPROTKB|Q5R7L7	216	RAB5C "Ras-related protein Rab	0.974	0.898	0.557	4.8e-55
UNIPROTKB|P51147	216	RAB5C "Ras-related protein Rab	0.964	0.888	0.572	7.8e-55
ZFIN|ZDB-GENE-031118-30	221	rab5c "RAB5C, member RAS oncog	0.979	0.882	0.563	7.8e-55
UNIPROTKB|Q58DS9	216	RAB5C "Ras-related protein Rab	0.974	0.898	0.552	9.9e-55
UNIPROTKB|F2Z560	216	RAB5C "Uncharacterized protein	0.974	0.898	0.552	9.9e-55
MGI|MGI:105306	216	Rab5c "RAB5C, member RAS oncog	0.974	0.898	0.557	1.6e-54

TAIR|locus:2153202 RHA1 "RAB homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 127/200 (63%), Positives = 149/200 (74%)

Query:     1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             MA + NKNI  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct:     1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             F+IWDTAGQERYHSLAPMYYRG       +DIT+  SFERAKKWVQELQ QGNPN++M L
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
               NK DL + RKV  EE E+YAQEN L F+ETSAK+A NV ++FYEIAKRL  V P+   
Sbjct:   121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query:   180 TGMKLHTESHGGGRRGFCCS 199
             TGM L            CC+
Sbjct:   181 TGMVLPNGPGATAVSSSCCA 200

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IMP

GO:0007034 "vacuolar transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2123010 ARA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 124/200 (62%), Positives = 149/200 (74%)

Query:     1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct:     1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             F+IWDTAGQERYHSLAPMYYRG       +D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ- 179
               NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEIA+RL  V P+   
Sbjct:   121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query:   180 TGMKLHTESHGGGRRGFCCS 199
             TGM L   +        CC+
Sbjct:   181 TGMVLPDRAMDRAVSSSCCA 200

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0271984 rab5A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 115/198 (58%), Positives = 147/198 (74%)

Query:     5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
             +NK  Q KLVLLG+   GK+SLVLRFV+G F D+QESTIGAAF  Q + LN+ T+KF+IW
Sbjct:     4 NNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIW 63

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124
             DTAGQERYH+LAPMYYRG       YDI S DSFERA KWV+ELQRQG+PN+++ L  NK
Sbjct:    64 DTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNK 123

Query:   125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ-TG-M 182
             +DL  KRKV+  E + YA+ENGL F+ETSAK++ NVNELF EIAK+L +   +R  +G +
Sbjct:   124 LDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPTTRPGSGRV 183

Query:   183 KLHTESHGG-GRRGFCCS 199
              +    +G  G++  CC+
Sbjct:   184 AIAPIDNGNTGKKNKCCN 201

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P51148 RAB5C "Ras-related protein Rab-5C" [Homo sapiens (taxid:9606)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 111/199 (55%), Positives = 139/199 (69%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P   TG    
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196

Query:   184 ---LHTESHGGGRRGFCCS 199
                +  + +    R  CCS
Sbjct:   197 NRGVDLQENNPASRSQCCS 215

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|Q5R7L7 RAB5C "Ras-related protein Rab-5C" [Pongo abelii (taxid:9601)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 111/199 (55%), Positives = 139/199 (69%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P   TG    
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGR 196

Query:   184 ---LHTESHGGGRRGFCCS 199
                +  + +    R  CCS
Sbjct:   197 NRGVDLQENNPASRSQCCS 215

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|P51147 RAB5C "Ras-related protein Rab-5C" [Canis lupus familiaris (taxid:9615)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/201 (57%), Positives = 140/201 (69%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL-------AEVNPSR 178
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L       A   PSR
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSR 196

Query:   179 QTGMKLHTESHGGGRRGFCCS 199
               G+ L   S     R  CCS
Sbjct:   197 NRGVDLQENSPAS--RSQCCS 215

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ZFIN|ZDB-GENE-031118-30 rab5c "RAB5C, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 116/206 (56%), Positives = 140/206 (67%)

Query:     2 ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
             A   NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ L L++ T+KF
Sbjct:    14 APVGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCLDDTTVKF 73

Query:    62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
             +IWDTAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L 
Sbjct:    74 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVIALA 133

Query:   122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTG 181
              NK DL  KR V  +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P  Q G
Sbjct:   134 GNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKSEP--QGG 191

Query:   182 MKLHTESHGG---------GRRGFCC 198
                   + GG         GR G CC
Sbjct:   192 AGSGGRARGGVDLQETAPQGRSGQCC 217

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

UNIPROTKB|Q58DS9 RAB5C "Ras-related protein Rab-5C" [Bos taurus (taxid:9913)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 110/199 (55%), Positives = 139/199 (69%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
             DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  IAK+L +  P    G    
Sbjct:   137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGR 196

Query:   184 ---LHTESHGGGRRGFCCS 199
                +  + +    R  CCS
Sbjct:   197 NRGVDLQENNPASRSQCCS 215

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z560 RAB5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 110/199 (55%), Positives = 139/199 (69%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-- 183
             DL  KR V+ +E + YA++N L F+ETSAK+A NVNE+F  IAK+L +  P    G    
Sbjct:   137 DLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGR 196

Query:   184 ---LHTESHGGGRRGFCCS 199
                +  + +    R  CCS
Sbjct:   197 NRGVDLQENNPASRSQCCS 215

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:105306 Rab5c "RAB5C, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 111/199 (55%), Positives = 137/199 (68%)

Query:     6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             NK  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWD
Sbjct:    17 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWD 76

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
             TAGQERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK 
Sbjct:    77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKA 136

Query:   126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLH 185
             DL  KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L +  P    G    
Sbjct:   137 DLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGR 196

Query:   186 T-----ESHGGGRRGFCCS 199
             T     +      R  CCS
Sbjct:   197 TRGVDLQESNPASRSQCCS 215

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005811 "lipid particle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51148	RAB5C_HUMAN	No assigned EC number	0.5829	0.9748	0.8981	yes	no
P61271	RAB5A_MACFA	No assigned EC number	0.5812	0.9748	0.9023	N/A	no
Q58DS9	RAB5C_BOVIN	No assigned EC number	0.5778	0.9748	0.8981	yes	no
P51147	RAB5C_CANFA	No assigned EC number	0.5970	0.9648	0.8888	yes	no
P36586	YPT5_SCHPO	No assigned EC number	0.5365	0.9748	0.9194	yes	no
P35278	RAB5C_MOUSE	No assigned EC number	0.5829	0.9748	0.8981	yes	no
Q86JP3	RAB5A_DICDI	No assigned EC number	0.5959	0.9798	0.9701	yes	no
Q5ZHW4	RAB5B_CHICK	No assigned EC number	0.5693	0.9698	0.8976	yes	no
Q5R7L7	RAB5C_PONAB	No assigned EC number	0.5829	0.9748	0.8981	yes	no
P36017	VPS21_YEAST	No assigned EC number	0.5487	0.8090	0.7666	yes	no
P31583	RHN1_NICPL	No assigned EC number	0.67	1.0	0.995	N/A	no
P31582	RAF2A_ARATH	No assigned EC number	0.66	1.0	0.995	yes	no
P29687	RAB5_TOBAC	No assigned EC number	0.655	1.0	0.995	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016755001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (200 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-109
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-82
pfam00071	162	pfam00071, Ras, Ras family	2e-82
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-75
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-68
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-65
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-63
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-58
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-57
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-54
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-53
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-52
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-51
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-50
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-49
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-49
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-49
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-47
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	5e-45
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-44
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	9e-42
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-41
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-40
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-39
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-38
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-38
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-38
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-37
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-36
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-36
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-35
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-33
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-32
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-32
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-31
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	7e-31
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	7e-31
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-30
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-30
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-30
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	8e-30
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	8e-30
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-29
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-29
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-29
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-28
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-28
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-28
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	8e-28
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-27
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-26
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-26
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-26
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-25
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-25
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-24
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-24
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-22
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	9e-22
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-20
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-19
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-19
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-18
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-18
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-15
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-15
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-15
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-14
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-12
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	5e-11
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-09
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	7e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	8e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-08
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	6e-08
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-06
cd01887	169	cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk	6e-06
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	1e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	2e-05
cd01898	170	cd01898, Obg, Obg GTPase	3e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	4e-05
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	4e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-05
cd00880	161	cd00880, Era_like, E	9e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-04
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	2e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	9e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	0.001
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.001
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	0.001
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	0.002
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  309 bits (795), Expect = e-109
 Identities = 109/162 (67%), Positives = 132/162 (81%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLGD   GK+S+VLRFVK +F + QESTIGAAF TQ ++L++ T+KF+IWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERY SLAPMYYRGAAAA+VVYDITS +SFE+AK WV+ELQ  G PN+++ L  NK DLE 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KR+V  EE + YA ENGL F+ETSAK+  NVNELF EIA++L
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  241 bits (618), Expect = 1e-82
 Identities = 78/159 (49%), Positives = 111/159 (69%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K+VL+GD G GKTSL+LRFV  +F +  +STIG  F ++ + ++   +K  IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGA  A++VYD+T+ +SFE   KW+ EL+    PN+ + LV NK DLE++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R+V  EE + +A+ENGL F ETSAK+  NV+E F  +A+
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  241 bits (617), Expect = 2e-82
 Identities = 82/160 (51%), Positives = 114/160 (71%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD G GK+SL++RF + +F +    TIG  F+T+ + ++  T+K  IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + +L P+YYRGA   ++VYDITS DSFE  KKW++E+ R  + N+ + LV NK DLE++R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EEGE  A+E GL F+ETSAK+  NV E F E+A+ +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  224 bits (573), Expect = 1e-75
 Identities = 78/161 (48%), Positives = 114/161 (70%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K++L+GD G GK+SL+ RF  G+F +  +STIG  F T+ + ++   +K  IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGA  A++VYDIT+ +SFE  + W++EL+   +PN+++ LV NK DLEE+
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE E +A+E+GL F ETSAK+  NV E F E+A+ +
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  206 bits (526), Expect = 1e-68
 Identities = 78/162 (48%), Positives = 109/162 (67%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K+VLLG+   GKTSLVLR+V+ +F +  EST  A+FF + +++    I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           RYH+L P+YYR A  A++VYDIT  DSF++ KKW++EL++    N+ + +V NK+DLE +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           R V   E E YA+  G    ETSAK+   + ELF  +AKR+ 
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  198 bits (505), Expect = 2e-65
 Identities = 74/160 (46%), Positives = 110/160 (68%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LGD   GKTS++ RF+   F +  ++TIG  F ++ + +++ T++  +WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R ++ AVVVYDIT+  SF+   KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+EN   F+ETSAK+ HNV +LF +IA+ L
Sbjct: 122 QVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  193 bits (492), Expect = 2e-63
 Identities = 72/160 (45%), Positives = 106/160 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +A++NGLSF+ETSA    NV E F ++   +
Sbjct: 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  179 bits (456), Expect = 5e-58
 Identities = 71/162 (43%), Positives = 103/162 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYD+T  +SF   K+W+QE+ R  + N+   LV NK DL +K+
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKK 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V   E + +A E G+ FLETSAK+A NV E F  +A+ + +
Sbjct: 124 VVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKK 165

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  178 bits (453), Expect = 2e-57
 Identities = 75/160 (46%), Positives = 100/160 (62%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   SFE  K W++ +    + ++   LV NK D+EEKR
Sbjct: 65  FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEKR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EEGE  A+E G+ FLETSAK+  NV E F  +AK +
Sbjct: 125 VVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  171 bits (434), Expect = 1e-54
 Identities = 70/158 (44%), Positives = 105/158 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  N N+ + L+ NK DLE +R
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           +V  EEGE +A+E+GL F+ETSAK+A NV E F   AK
Sbjct: 126 EVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 163

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  166 bits (422), Expect = 8e-53
 Identities = 66/162 (40%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+SL+LRF    F +   STIG  F  + ++++   +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEE 129
           R+ +L   YYRGA   ++VYD+T  D+F+    W+ EL     NP+ +  LV NK+D E 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            R+V  EEG+ +A+++ + F+ETSAK+   V + F E+ +++
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  165 bits (418), Expect = 3e-52
 Identities = 71/162 (43%), Positives = 104/162 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ +N   IK  IWDTAGQER
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++FL+ NK DLE +R
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  EE + +A ENGL FLE SAK+  NV + F E AK++ +
Sbjct: 124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  163 bits (414), Expect = 1e-51
 Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD   GKT +V RF  G F + Q +TIG  F  + L +    +K  IWDTAGQER
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR A  A++ YDIT   SFE    W++E+++ G  N+++ L+ NK DLEE+R
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124

Query: 132 KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EE    A+  G L+ LETSAK + NV E F  +A  L
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  162 bits (411), Expect = 3e-51
 Identities = 69/161 (42%), Positives = 105/161 (65%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   ++K  IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYRGAA A++VYDITS +SF     W+ + +   +P++++ LV NK DLE+ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V   E   +AQENGL FLETSA +  NV E F + A+ +
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  160 bits (407), Expect = 1e-50
 Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L +RFV G+F +  + TI  ++  Q+  ++  T   DI DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQI-VVDGETYTLDILDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY ITS +SFE  K   +++ R     ++ + LV NK DLE +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EEGE  A+E G  FLETSAK+  N++ELF  + + +
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  158 bits (401), Expect = 3e-49
 Identities = 67/160 (41%), Positives = 104/160 (65%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  N N+ + L+ NK DL  +R
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EEGE +A+E+GL F+E SAK+A NV E F + A ++
Sbjct: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  157 bits (398), Expect = 4e-49
 Identities = 69/160 (43%), Positives = 101/160 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +    IK  IWDTAGQER
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  N  +I  LV NK+DL E+R
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  +  E ++    + +LETSAK + NV +LF ++A RL
Sbjct: 129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  158 bits (400), Expect = 7e-49
 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 16/203 (7%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++++ RF + +F    +STIG  F T+ L +   T+K  IWDTAGQER
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDIT   +F+  ++W++EL+   + N+++ +  NK DL   R
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR 133

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI---------AKRLAEVNPSRQTGM 182
            V  E+G+  A++ GLSFLETSA  A NV + F  I          K LA    +  +G+
Sbjct: 134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGL 193

Query: 183 KLH------TESHGGGRRGFCCS 199
                     ++ G  +RG CCS
Sbjct: 194 PGQGTTINVADTSGNNKRG-CCS 215

Length = 216

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  152 bits (386), Expect = 3e-47
 Identities = 68/171 (39%), Positives = 105/171 (61%), Gaps = 5/171 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ +++++  +   IWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
           + SL   +YRGA   V+VYD+T+  SFE    W  E   Q +P    N    ++ NK+DL
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 128 EEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
           EEKR+V  ++ + + +  G + + ETSAK A NV++ F  IA+   E    
Sbjct: 122 EEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  147 bits (373), Expect = 5e-45
 Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 15/198 (7%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           VK+V+LG    GKTSLV R+V  +F     ++TIGAAF  + + + E  +   IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERY +++ +YYRGA AA+V YD+T   SFERAK WV+ELQ     +  ++L   K DL E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIE 119

Query: 130 K----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK-----RLAEVNPSRQT 180
           +    R+V   + + +A E      ETS+K+  NV+ELF ++A+        ++N  +  
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGV 179

Query: 181 GMKLHTESHGGGRRGFCC 198
            +     S+       CC
Sbjct: 180 DLGQKKNSYFYS----CC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  145 bits (368), Expect = 4e-44
 Identities = 64/166 (38%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAG 68
           Q +L+++GD   GK+SL+ RF +G+F +  + T+G  FF++++ +   V IK  +WDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDL 127
           QER+ S+   YYR +   ++V+DIT+ +SFE    W++E +    P+  +F LV +K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           E +R+V  EE E  A++ G+ ++ETSA++  NV E F  + + + E
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYE 167

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  138 bits (349), Expect = 9e-42
 Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F D  + TI    + + + ++      DI DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY IT   SFE  KK+ +++ R +   ++ + LV NK DLE +
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R V  EEG+  A++ G  FLETSAK   NV+E FY++
Sbjct: 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  138 bits (350), Expect = 1e-41
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F       T+G  F  +V++++ V +K  IWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++++ L+ NK D+  +
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE--VNPSRQTGMKLHTES 188
           R VK E+GE  A+E G+ F+ETSAK+  NV   F  +AK L    V    +   K+    
Sbjct: 122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQDYV 181

Query: 189 HGGGRRGFCC 198
               +   CC
Sbjct: 182 EKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  137 bits (348), Expect = 1e-41
 Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI    + + + ++      DI DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY IT   SFE   K+ +++ R +   ++ + LV NK DLE +
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170
           R V  EEG+  A++ G  FLETSAK   NV+E FY++ + 
Sbjct: 123 RVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVRE 162

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  136 bits (344), Expect = 2e-40
 Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 18/185 (9%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
              + K+V+LGD G GKT+L+ R V  +F +    TIG     + +      IK  +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKV 125
           AGQE Y SL P YYRGA   ++VYD T  +S +   ++W++EL+     ++ + LV NK+
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 126 DLEEKRKVKNEEGELYAQEN---------------GLSFLETSAKSAH--NVNELFYEIA 168
           DL +++    E      +E                  + LETSAKS    NVNELF E+ 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 169 KRLAE 173
           ++L E
Sbjct: 182 RKLLE 186

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  132 bits (334), Expect = 4e-39
 Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 7/167 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE 70
           K++++GD+G GKTS++ R+V G F    ++TIG  F  +V+       ++  +WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIM--FLVANKVD 126
           R+  +  +YY+GA  A++V+D+T   +FE   KW  +L           +   L+ANK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 127 LEEKR-KVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKRL 171
           L+++R     E+ + + +ENG   + ETSAK   N+ E    + K +
Sbjct: 122 LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  131 bits (331), Expect = 4e-39
 Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAG 68
           +K++++G+   GK+S++ RFVKG F    + TIG  F  + + L +    ++  +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRGA A ++V+  T  +SFE  + W ++++ +   ++ M LV  K+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           ++  + NEE E  A+   L    TS K   NV ELF
Sbjct: 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  130 bits (329), Expect = 1e-38
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 5/165 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F +  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 72  Y-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
           +  S+   YYR   A V VYD+T+M SF     W++E ++   PN +   LV NK DL E
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAK---SAHNVNELFYEIAKRL 171
           + +V  +  + +A  + +   ETSAK      +V  +F  +A +L
Sbjct: 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  130 bits (328), Expect = 1e-38
 Identities = 66/138 (47%), Positives = 91/138 (65%)

Query: 40  ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE 99
           +STIG  F ++ L L+E  ++  +WDTAGQER+ SL P Y R +AAA+VVYDIT+  SFE
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 100 RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159
              KW+Q++  +   ++I+ LV NK DL + RKV  EEG   AQE    F ETSAK+ HN
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 160 VNELFYEIAKRLAEVNPS 177
           +  LF +IA +L  ++ S
Sbjct: 130 IKVLFKKIAAKLPNLDNS 147

Length = 176

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  128 bits (323), Expect = 6e-38
 Identities = 61/157 (38%), Positives = 92/157 (58%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +L+L+GD G GKT L+ RF   +F     STIG  F  + + ++ + ++  IWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYR A    +VYDI+S  S++   KWV ++       +   L+ NK D E+KR
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168
           +V +E+G   A+E G+ F ETSA +  N+ E F  + 
Sbjct: 122 QVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  128 bits (324), Expect = 1e-37
 Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG    +VVYD+T+ +SF   K+W+QE++ Q   ++   LV NK D  E++
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE-QNCDDVCKVLVGNKNDDPERK 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V+ E+   +A + G+S  ETSAK   NV E+F  I
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  126 bits (318), Expect = 1e-36
 Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 12/207 (5%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
           ++S  ++  K++L+GD G GK+SL++ F+     D    TIG  F  + L++    +K  
Sbjct: 7   QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLA-PTIGVDFKIKQLTVGGKRLKLT 65

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQ-RQGNPNLIMFL 120
           IWDTAGQER+ +L   YYR A   ++VYD+T  ++F   +  W +E++    N + +  L
Sbjct: 66  IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKML 125

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
           V NKVD E +R V  EEG   A+E+G  FLE SAK+  NV + F E+A ++ EV    + 
Sbjct: 126 VGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEE 185

Query: 181 G--------MKLHTESHGGGRRGFCCS 199
           G        +K   E       G CCS
Sbjct: 186 GSTAVKRNILKQKPEHQPPPNGG-CCS 211

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  124 bits (312), Expect = 8e-36
 Identities = 59/157 (37%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           ++S+   YYR A   ++VYDIT  ++F+   KW++ + +  + +  + LV NK+D E  R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEI 167
           ++  ++GE +AQ+  G+ F E SAK   NV+E+F ++
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  122 bits (307), Expect = 2e-35
 Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAGQER
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174
            V  E G   A + G  F E SAK   NV ++F    +RL ++
Sbjct: 123 VVSAERGRQLADQLGFEFFEASAKENINVKQVF----ERLVDI 161

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  116 bits (292), Expect = 4e-33
 Identities = 48/159 (30%), Positives = 92/159 (57%), Gaps = 5/159 (3%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++ +G+ G GK+ ++ R+ +G+F      TIG  +  + +S+    ++ + +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-----NLIMFLVANKV 125
            Y  +   +Y+     ++VYD+T   SFE    W++E++++G P     N+++ + ANK+
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           DL + R V  +EG L+A+  G  + ETSA +   VNE+F
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  113 bits (284), Expect = 5e-32
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           VK++LLGD   GK+ LV RF+   +   Q ST     +         TI  D WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YY  A A ++V+D+T   +++   KW +EL R+  P +   +VANK+DL+  
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPS 119

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
                ++   +A+++ L     SA    NV +LF + A +LA
Sbjct: 120 ---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD-AIKLA 157

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  112 bits (283), Expect = 7e-32
 Identities = 52/159 (32%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F    + TI  ++ T+   ++    + DI DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEEK 130
           + ++   Y R     ++V+ +T   SFE   K+  ++ R  + +   M LV NK DLE +
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R+V  EEG+  A++  + ++ETSAK   NV++ F+++ +
Sbjct: 123 RQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  111 bits (280), Expect = 2e-31
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-----FFTQVLSLNEVTIKFDIWDT 66
           KLVL+GD GTGKT+ V R + G+F     +T+G       F T     N   I+F++WDT
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-----NRGKIRFNVWDT 56

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQE++  L   YY     A++++D+TS  +++    W ++L R    N+ + L  NKVD
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 115

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +  K +    +   + ++  L + E SAKS +N  + F  +A++L 
Sbjct: 116 I--KDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLL 159

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  110 bits (277), Expect = 5e-31
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130
           Y ++   Y R     + V+ I S  SFE    + ++++R  + + + M LV NK DL   
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA-A 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R V   +G+  A+  G+ ++ETSAK+   V E FY + +
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  110 bits (277), Expect = 5e-31
 Identities = 59/161 (36%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + S+  +Y +     +VVY + +  +F+  K    ++ R +G   + + LV NKVDLE +
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V + EG   A+E G  F+ETSAKS   VNELF EI +++
Sbjct: 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  111 bits (280), Expect = 7e-31
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 4/173 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQ 69
           +K+V+LGD  +GKTSL+ RF +  F    + TIG  FF++ ++L   + +   +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKVD 126
           +    +   Y  GA A  +VYDIT+  SFE  + W   V+++  +      M LV NK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
           LE  R+V  E+   +AQEN +  +  SAK+   V   F  IA  L  V  S+ 
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQA 173

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  111 bits (278), Expect = 7e-31
 Identities = 68/173 (39%), Positives = 99/173 (57%), Gaps = 6/173 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F D  + TI  ++  Q   ++E T   DI DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQC-VIDEETCLLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R     + VY ITS  SFE    + +++ R +    + M LV NK DL+ +
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRLAEVNPSRQ 179
           R+V   EG+  A+  G+ FLETSAK   NV+E FY    EI K L E  PS++
Sbjct: 126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQK 178

Length = 189

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  109 bits (273), Expect = 2e-30
 Identities = 55/162 (33%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
            K++++G  G GK++L L+F+  +F +  E T  A  + + + L+   ++ +I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y ++   Y+R     ++V+ IT M+SF   A+   Q L+ + + N+ + LV NK DLE+
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KR+V  EE    A++ G++++ETSAK+  NV+++F+++ + +
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  109 bits (275), Expect = 4e-30
 Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 40/188 (21%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQ 69
           +K+VLLGDM  GKTSL+ R+++ +F D   ST+G AF+  Q    N       IWDTAG+
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYN-----ISIWDTAGR 54

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL-- 127
           E++H L  MY RGAAA ++ YD++++ S E  +     L    N + +  +V NK+DL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 128 -----------------EEKRKVKNEEGELYAQE----NGLS----------FLETSAKS 156
                            E++R+V  E+ + + +       L             ETSAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 157 AHNVNELF 164
            +NV+ELF
Sbjct: 175 GYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  108 bits (270), Expect = 5e-30
 Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD+  GKT L+ RF K  F    ++TIG  F  +   +  V     +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEK 130
           +  +A  YYRGA A ++V+D+T + S E  ++W+++  ++ +P ++++FLV  K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 131 RKVKNEEGEL--YAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175
            +    E +    A+E    +   SA +  NV + F+ +A    E+ 
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  107 bits (270), Expect = 8e-30
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 31/180 (17%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQF--------FDFQESTIGAAFFTQVLSLNEVTIKFD 62
           +K+V++GD   GKT L++ +   +F        FD   + +         +++   +   
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANV---------TVDGKQVNLG 51

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLV 121
           +WDTAGQE Y  L P+ Y      ++ + + S  SFE  K KW  E+ +   PN+ + LV
Sbjct: 52  LWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEI-KHYCPNVPIILV 110

Query: 122 ANKVDLEEKRK-----------VKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAK 169
             K+DL +              +  EEGE  A+E G   ++E SA +   + E+F E  +
Sbjct: 111 GTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  109 bits (273), Expect = 8e-30
 Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
            + KL+L+GD G GKT+ V R + G+F      T+G          N   I F++WDTAG
Sbjct: 8   PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY     A++++D+TS  +++    W +++ R    N+ + LV NKVD++
Sbjct: 68  QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVK 126

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           + R+VK  +   + ++N L + + SAKS +N  + F  +A+RL 
Sbjct: 127 D-RQVKARQITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLT 168

Length = 215

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  107 bits (269), Expect = 1e-29
 Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 7/186 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LGD G GKT+L ++     F +  + TI  ++  QV+ ++      ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR---QGNPNLIMFLVANKVDLE 128
           Y +L   + R     ++VY ITS  +FER +++ +++QR   +   ++ + +V NK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTES 188
            +R+V  EEG   A+  G  F+E SAK+  NV   FY + + L +    RQ G       
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ---QRQGGQGPKGGP 176

Query: 189 HGGGRR 194
                +
Sbjct: 177 TKKKEK 182

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  106 bits (266), Expect = 3e-29
 Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK+++ ++F+   F D+ + TI  A+ TQ    NE  +  DI DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPAL-LDILDTAGQAE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++ Y +T   SF+ A ++ + + R +   ++ + LV NKVDLE++
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQ 122

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           R+V  EEG   A+E    F ETSA     +++ F+ + + + 
Sbjct: 123 RQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  107 bits (268), Expect = 5e-29
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 13/166 (7%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-----FFTQVLSLNEVTIKFDIWDT 66
           KLV++GD GTGKT+ V R + G+F    E TIG       FFT     N   I+F  WDT
Sbjct: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQE++  L   YY     A++++D+T+  +++    W ++L R    N+ + L  NKVD
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVD 128

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           ++  R+VK ++   + ++N L + E SAKS +N  + F  +A++LA
Sbjct: 129 VKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLA 172

Length = 219

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  105 bits (263), Expect = 6e-29
 Identities = 59/161 (36%), Positives = 100/161 (62%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +     V+VY IT+  +F +      Q L+ +   ++ M LV NK DLE++
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  E+G+  A++ G +FLETSAK+  NVNE+FY++ +++
Sbjct: 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  104 bits (260), Expect = 2e-28
 Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K+  +K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV-A 122
           AGQER+ SL   +YRG+   ++ + +    SF+    W +E         P    F++  
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 123 NKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYEIAKR 170
           NK+D+  +R+V  EE + + ++NG   + ETSAK A NV   F E  +R
Sbjct: 122 NKIDI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  103 bits (259), Expect = 4e-28
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 15/165 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT----------IK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N             + 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +LQ      NP+++
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +
Sbjct: 125 --LIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  103 bits (258), Expect = 5e-28
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 21/176 (11%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQE 70
           LV++GD   GKT L++ +    F    E  +   F  ++  + ++   ++  +WDTAGQE
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAF---PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L P+ Y      ++ + + S  SFE  K KW  E+ +   PN+ + LV  K+DL  
Sbjct: 58  DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV-KHFCPNVPIILVGTKLDLRN 116

Query: 128 -----EEKRK-----VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                EE  K     V  E+G+  A+  G + +LE SA +   V E+F E A R A
Sbjct: 117 DKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF-EEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  102 bits (255), Expect = 8e-28
 Identities = 59/162 (36%), Positives = 99/162 (61%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI  ++  Q+    +  +  +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCM-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +      +VY IT+  SF   +   +++ R +   ++ M LV NK DLE++
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 RKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           R V  EEG+  A++ G   FLETSAKS  NV+E+FY++ +++
Sbjct: 122 RVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  101 bits (253), Expect = 2e-27
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 15/166 (9%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           V++G  G GK+SL+   + G+     D   +T     +  V  L++  +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 71  RYH-----SLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANK 124
            +       LA +  RGA   ++V D T  +S E AK   ++ L+++G P   + LV NK
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNK 115

Query: 125 VDLEEKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNELFYEIAK 169
           +DL E+R+V+        A+  G+   E SAK+   V+ELF ++ +
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +K+V++GD   GK++L+ R +  +      +      + T V+  +  T KF++ DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITS-MDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           E Y ++  +YYR   +++ V+DI   +   E    K  +E+       + + LV NK+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            +  K+K     L+A+ NG   +  SA++  N++  F  +
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V+ G  G GK+SLVLRFVKG F +    TI   +  QV+S ++      I DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSHQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-WVQELQRQGN--PNLIMFLVANKVDLE 128
           + ++  +      A ++VY ITS  S E  K  +    + +GN    + + LV NK D  
Sbjct: 62  FPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDES 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
             R+V + EG   A+    +F+ETSAK+ HNV ELF E+
Sbjct: 122 PSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 98.9 bits (247), Expect = 2e-26
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG  G GK++L +RF+  +F    E  + + +  QV +++   +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQV-TIDGEQVSLEIQDTPGQQQ 59

Query: 72  YHSLAPM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDL 127
                 +    R A   V+VY IT   SF+   + +Q ++   + +  + + LV NK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVNELFYEIAK 169
              R+V  EEG+  A E G  F E SA ++   V  +F+E+ +
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCR 162

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 99.7 bits (248), Expect = 2e-26
 Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 3/157 (1%)

Query: 16  LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75
           +GD GTGKT+ V R + G+F     +T+G      V   N   I+F++WDTAGQE++  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 76  APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135
              YY     A++++D+T+  +++    W ++L R    N+ + L  NKVD+++ RKVK 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKA 118

Query: 136 EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +    + ++N L + + SAKS +N  + F  +A++L 
Sbjct: 119 KSITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 154

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+G F +    TI   F +++++        +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y  L   Y  G    ++VY +TS  SFE  K    ++    G  ++ + LV NK DL  +
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           R+V  EEG+  A+  G +FLE+SAK   NV E F
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 96.3 bits (240), Expect = 4e-25
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           +++VK+V++GD G GKT L++ + +G F +    T+   + T +   N   I+  +WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVD 126
           GQE Y  L P+ Y      ++ Y + +  S +    KW  E+     P   + LV  K D
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKTD 119

Query: 127 LEEKRK------------VKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
           L + +             V  E+GE  A+    ++++E SAK   NV+E+F
Sbjct: 120 LRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 95.8 bits (238), Expect = 6e-25
 Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 1/159 (0%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K +L+GD   GK  ++     G         +G  + T  + L+   +K  +WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   Y RGA   ++VYDIT+  SF+   +W++E+     P +   LV N++ L  K
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFK 125

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R+V  E+ + YA+ NG++F E S     N+ E F E+A+
Sbjct: 126 RQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 93.8 bits (233), Expect = 3e-24
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 29/200 (14%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+V+LGD   GKTSL+  F +G F    E T+   F  +   + ++ + ++  +WDTAGQ
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV---FENYIHDIFVDGLAVELSLWDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
           E +  L  + Y      ++ + + + DS E  + KW+ E+ R   P + + LVA K DL 
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI-RHHCPGVKLVLVALKCDLR 117

Query: 129 EKRKVKNEEGELYAQENGLS---------FLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
           E R  ++      + E GL+         +LE SAK    VNE F E A+      P   
Sbjct: 118 EPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPP-- 175

Query: 180 TGMKLHTESHGGGRRGFCCS 199
                    H       C  
Sbjct: 176 -------HPHSRA----CTI 184

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 92.6 bits (230), Expect = 6e-24
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQES---TIGAAFFTQVLSL--NEVTIKFDIWDT 66
           +  ++GD   GK++LV  F       FQ++   T G     + + +     +++  I+D+
Sbjct: 2   QCAVVGDPAVGKSALVQMF-HSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKV 125
           AGQE +  +    +   A   VVYD+T+  SF    +W+  ++   +  +    LV NK 
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           DL ++R+V   + +  AQ N L F ETSAK        F  +A+
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 23/178 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---TIKFDIWDTAG 68
           KLV++GD   GKT L++ F K QF +    T+   +   +    EV    ++  +WDTAG
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI----EVDGKQVELALWDTAG 58

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y      ++ + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 59  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 117

Query: 128 -------EEKRK-----VKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLA 172
                   E  K     VK EEG   A++     +LE SAK+   V E+F E+A R A
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF-EMATRAA 174

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 2e-23
 Identities = 55/173 (31%), Positives = 91/173 (52%), Gaps = 15/173 (8%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD   GKTSL+  F  G+F +    T+   + T    ++   ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC-RVDGKPVQLALWDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK 130
           Y  L P+ Y  A   ++ + I + DS E  + KW++E+ R+  PN+ + LV  K DL ++
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEV-RRYCPNVPVILVGLKKDLRQE 120

Query: 131 ----------RKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLA 172
                       V  ++ +L A+  G   ++E SA +   V+++F E A R A
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATRAA 172

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG  G GK++L ++FV+  F +  + TI  ++  QV          +I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +     ++VY +TS  S     +  +++ R + + N+ M LV NK DLE+ 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121

Query: 131 RKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  E+G  L  Q   + F ETSA+   NV+E+F ++ +++
Sbjct: 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 87.1 bits (216), Expect = 9e-22
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+ LLGD   GKTSL++++V+G+F +    T+G  F  + +S+    I F IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL--- 127
            + ++ P+  + A A + ++D+T   +    K+W ++  R  N   I  LV  K DL   
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPILVGTKYDLFAD 119

Query: 128 ---EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
              EE+ ++  ++   YA+      +  S   + NV ++F
Sbjct: 120 LPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKF-DIWDTAG 68
           ++VLLGD G GK+SL   F  G + D      G   + + +S++  E T+   D W+   
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWE--- 58

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDL 127
           QE    L     +   A V+VY +T   SFE+A +   +L+R +   ++ + LV NK DL
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDL 118

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
              R+V  +EG   A      F+ETSA   HNV+ELF  I +++
Sbjct: 119 VRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V++GD G+GK+SL+ + V G+F        G       L ++  T   +IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVANK 124
                 ++ + A A ++VYD+T  +S         W+  L R+    + + LV NK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL-RKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           +K VL+GD   GKTSL++ +       +    +  AF  F+ V+ ++   ++  + DTAG
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYT---TNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAG 57

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           Q+ +  L P+ Y      ++ + + +  SF+  ++KW+ E+ R+ NP   + LV  + DL
Sbjct: 58  QDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI-RKHNPKAPIILVGTQADL 116

Query: 128 EE------------KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
                         ++ V     +  A++ G   ++E SA +  N+ E+F
Sbjct: 117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFD-----FQESTIGAAFFTQVLSLNE-VTIKFDIW 64
           V++VL+GD G GK+SL++  V  +F +       E TI A          E V     I 
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVT------PERVPTT--IV 54

Query: 65  DT--AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLV 121
           DT    Q+R +  A +  R A    +VY +    + ER   KW+  + R+    + + LV
Sbjct: 55  DTSSRPQDRANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLI-RRLGVKVPIILV 111

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLS----FLETSAKSAHNVNELFY 165
            NK DL +       E E+    N        +E SAK+  NV+E+FY
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 20/203 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V+LG    GKT++V RF+ G+F +    TI   F  ++ S+     + DI DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFE---------RAKKWVQELQRQGNPNLIMFLVA 122
           + ++  +        ++V+ + + +SFE            K   + + + N  + M +  
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 123 NKVDLEEKRKVKNEEGELY-AQENGLSFLETSAKSAHNVNELFY---EIAKRLAEVNPSR 178
           NK D +  R+V+ +E E     +   ++ E SAK   N++E+F     +AK   E++PS 
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSL 180

Query: 179 ------QTGMKLHTESHGGGRRG 195
                 Q G  LH +S GG R+ 
Sbjct: 181 HRKISVQYGDALHKKSRGGSRKR 203

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 14/166 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V  ++  T+   +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGNTVNLGLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRGA   ++ + + S  S+E   KKW+ EL+    P + + LV  K+DL +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRD 119

Query: 130 KRK----------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELF 164
            ++          +   +G EL  Q    +++E S+K+  NV  +F
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 22/174 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+VL+GD   GKT+L+  F K  F +    T+   F  +T    +++  I+  +WDT+G 
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128
             Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E++    PN  + LV  K DL 
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLR 118

Query: 129 ----------EKRK--VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYEIA 168
                      KR+  V +E+G   A++ G  +++E SAK++ N V ++F E+A
Sbjct: 119 TDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF-EMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFT-QVLSLNEVTIKFDIWDTAGQ 69
            KL+L+G  G GKTSL  + +  +F   + ST G      ++ +     I+ ++WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLE 128
           E YH+    +    +  ++V+D+ + D   R   W+++++   G   +I  LV   +D  
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI--LVGTHIDES 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
               +  +                S K+   + EL   IAK
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 11/172 (6%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +LV +G  G GKT+L+ RF+   F      T+     ++   +  V +  DI DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEK 130
           + ++  +  +   A  +VY +   +SFE  K+  +E L+ + +  + + +V NK+D   +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 131 RKVKNEEGELYAQ---ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN-PSR 178
           R+V+  +     +    NG  F+E SAK   NV E+F E+   L + N PS 
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVFKEL---LQQANLPSW 166

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 70.5 bits (172), Expect = 2e-15
 Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 21/177 (11%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
           N+N++ K+V++GD   GKT+L+  F K  F    E+ +   F  +T    ++   I+  +
Sbjct: 1   NQNVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSL 57

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E+Q +  PN  M LV 
Sbjct: 58  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 116

Query: 123 NKVDL------------EEKRKVKNEEGELYAQE-NGLSFLETSAKSAHN-VNELFY 165
            K DL              +  V  ++G   A++    +++E SA  + N V ++F+
Sbjct: 117 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 173

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 16/184 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +  Q  +++  T+  ++WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQE 62

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L  + Y      ++ + I S  S+E  + KW  E+     PN+ + LV  K DL  
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRN 121

Query: 128 --EEKRKVK--------NEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
             +  +K+K         ++G   A++   + +LE SA +   V E+F E  + +    P
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

Query: 177 SRQT 180
            + T
Sbjct: 182 IKDT 185

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVD--- 126
            Y  L P+ Y      ++ + + S  SFE  + KW  E++    PN  + LV  K+D   
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 119

Query: 127 -------LEEKR--KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                  L+EK+   +   +G   A+E   + +LE SA +   +  +F E
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 67.4 bits (164), Expect = 6e-14
 Identities = 53/200 (26%), Positives = 97/200 (48%), Gaps = 28/200 (14%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDT 66
           ++ KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT
Sbjct: 12  VRCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDT 68

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKV 125
           +G   Y ++ P+ Y  + A ++ +DI+  + F+ A KKW  E+     P+  + L+  K 
Sbjct: 69  SGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKT 127

Query: 126 DL------------EEKRKVKNEEGELYAQENGL-SFLE----TSAKSAHNV----NELF 164
           DL            +++  +  E+G   A++ G  ++LE    TS KS H++    + L 
Sbjct: 128 DLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLC 187

Query: 165 YEIAKRLAEVNPSRQTGMKL 184
                 LA+ +P R    +L
Sbjct: 188 INKLSPLAKKSPVRSLSKRL 207

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 50/171 (29%), Positives = 94/171 (54%), Gaps = 21/171 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQ 69
           K+V++GD   GKT+L+  F K    ++ ES +   F  +T    +++  I+ ++WDT+G 
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKD---NYPESYVPTVFENYTASFEIDKHRIELNMWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD-- 126
             Y ++ P+ Y  + A ++ +DI+  ++ +   KKW  E Q +  PN  + LV  K+D  
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMR 118

Query: 127 -----LEEKRK-----VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFY 165
                L E  K     V +E+G L A++ G ++++E S++ + N V ++F+
Sbjct: 119 TDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFH 169

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++++LG  G GKT+++ +  K         TIG      V ++    +KF +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG----FNVETVEYKNVKFTVWDVGGQDK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVDL 127
              L   YY      + V D +  +  E AK  + +L    + +G P LI+   ANK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLIL---ANKQDL 112

Query: 128 EEKRKV 133
                 
Sbjct: 113 PGALTE 118

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+ +        ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL-- 127
            Y  L P+ Y      +V + + S  SFE  K KWV E+     P     LV  ++DL  
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRD 119

Query: 128 ----------EEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
                      +++ +  E GE  A++   + ++E SA +   +  +F E
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           + L+G   +GKT+LV     GQF +    T+G  F  + ++   VTIK  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 73  HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKVDLE 128
            S+   Y RG  A V V D    +  E AK  + +L      +G P L+   + NK DL 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLV---LGNKNDLP 114

Query: 129 EKRKVKNEEGELYAQE---NGLSFLETSAKSAHNVNE 162
               V     ++  +      +S    SAK   N++ 
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 58.5 bits (141), Expect = 5e-11
 Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 20/172 (11%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF--DIWDTAG 68
           +K V++GD   GKT L++ +    F    E  +   F    +S+     ++   ++DTAG
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 57

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y      ++ + + +  SF+  K +WV EL ++  PN+   L+  ++DL
Sbjct: 58  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPYLLIGTQIDL 116

Query: 128 EE------------KRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE 166
            +            ++ +  E+G+  A+E G   ++E SA +   +  +F E
Sbjct: 117 RDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 26/198 (13%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD----- 65
           V++ +LG  G GKT++V +F+  +F +    T     +   + L+       I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 66  ----TAGQE----RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ---ELQRQGNP 114
               TAGQE    R+  L     R + A ++VYDI S DSF   K   Q   E +  GN 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 115 NLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK---- 169
              + +V NK D +  R   ++    L  +     +LE SAK   ++  LF E+      
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175

Query: 170 RLAEVNPSRQTGMKLHTE 187
           R    +P+ +    LH E
Sbjct: 176 RGRSTHPALRLQGALHRE 193

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            N ++++++LG    GKT+++ +   G+       TIG   F  V ++    +KF +WD 
Sbjct: 11  WNKEMRILILGLDNAGKTTILYKLKLGEIVTTI-PTIG---FN-VETVTYKNVKFTVWDV 65

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKV 125
            GQE    L   Y+    A + V D    D  E AK+ +   L  +   +  + ++ANK 
Sbjct: 66  GGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 126 DLEE 129
           DL  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQ 69
           +V+LG    GKT+++ R    +F +F  +     F T+ + +   N   + F  WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRL---KFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR----QGNPNLIMFLVANKV 125
           E+   L   Y R     V V D   ++  E AK  + ++ +    QG P L+   +ANK 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLV---LANKQ 119

Query: 126 DLEEKRKVKNEEGELYAQE 144
           DL     V   E  L   E
Sbjct: 120 DLPNALPVSEVEKLLALHE 138

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 11  NKEMRILMVGLDAAGKTTILYKLKLGESV----TTIPTIGF-NVETVTYKNISFTVWDVG 65

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY      + V D    D  + A+   +EL R  N     + ++ + AN
Sbjct: 66  GQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR---EELHRMLNEDELRDAVILVFAN 122

Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD 
Sbjct: 6   GNKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDV 60

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVA 122
            GQ++   L   YY G    + V D    D  + A+   QEL R  N     + ++ + A
Sbjct: 61  GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---QELHRIINDREMRDALLLVFA 117

Query: 123 NKVDL 127
           NK DL
Sbjct: 118 NKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 25/156 (16%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-------------AAFFTQVLSLNE 56
           QV+++++GD G GK+SLV   VKG        TIG              +    +   +E
Sbjct: 21  QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80

Query: 57  VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--- 113
                ++WD +G ERY     ++Y      + V+D++   +    +KW  E+   G    
Sbjct: 81  RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA 140

Query: 114 ------PNLI---MFLVANKVDLEEKRKVKNEEGEL 140
                 P  +     ++ NK D+  K   +   G L
Sbjct: 141 PLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176

Length = 334

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-----NEVTIKFDIWD 65
           VK+++LGD G GK+SLV    K Q       T+G +   +  +       E T   ++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 66  TAGQ----ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112
             G     E   S   ++Y      + V+D+T+  S +   +W  E   + 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRD 111

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G    GKT+++ +F+ G+       TIG    + V  +    I+F +WD  GQE 
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIG----SNVEEIVYKNIRFLMWDIGGQES 71

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL---IMFLVANKVDL 127
             S    YY    A ++V D T  +     K   +EL +   + +L   ++ ++ANK DL
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLPLTK---EELYKMLAHEDLRKAVLLVLANKQDL 128

Query: 128 EE 129
           + 
Sbjct: 129 KG 130

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family

 Score = 44.0 bits (105), Expect = 6e-06
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 47/183 (25%)

Query: 19  MG---TGKTSL--VLR---FVKGQFFDFQES---T--IGAAFFTQVLSLNEVTIKFDIWD 65
           MG    GKT+L   +R      G      E+   T  IGA      + +  +T    I D
Sbjct: 6   MGHVDHGKTTLLDKIRKTNVAAG------EAGGITQHIGAYQVPIDVKIPGITF---I-D 55

Query: 66  TAGQERYHSLAPMYYRGAAA---AVVVYDITSMDSFE-RAKKWVQELQRQGNPNLIMFLV 121
           T G E + +   M  RGA+    A++V      D    +  + +   +    P     +V
Sbjct: 56  TPGHEAFTN---MRARGASVTDIAILVVAA--DDGVMPQTIEAINHAKAANVP----IIV 106

Query: 122 A-NKVDLEEKR-----KVKNEEGELYAQ--ENG--LSFLETSAKSAHNVNELFYEIAKRL 171
           A NK+D          +VKNE  EL     E G  +S +  SAK+   +++L   I   L
Sbjct: 107 AINKIDKPYGTEADPERVKNELSELGLVGEEWGGDVSIVPISAKTGEGIDDLLEAILL-L 165

Query: 172 AEV 174
           AEV
Sbjct: 166 AEV 168

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 24/163 (14%)

Query: 12  KLVLLGDMGTGKTSLVLR-FVKGQFFD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           K++L+G  G+GK+S+    F      D     +TI      Q        +  ++WD  G
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDV---EQSHVRFLGNLTLNLWDCPG 57

Query: 69  QERY-----HSLAPMYYRGAAAAVVVYDITSMD---SFERAKKWVQELQRQGNPNLIMFL 120
           Q+ +            +      + V+D+ S +         K ++ L  Q +PN  +F+
Sbjct: 58  QDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEAL-YQYSPNAKVFV 116

Query: 121 VANKVDL--EEKRK-VKNEEGELYAQE------NGLSFLETSA 154
           + +K+DL  E++RK +  +  E   +E        L+F  TS 
Sbjct: 117 LIHKMDLLSEDERKEIFEDRKEEIIEEIEDFGIEDLTFFLTSI 159

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++V LG  G GKT+++ +  + +F      TIG      V ++    +KF IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIG----FNVETVEYKNLKFTIWDVGGKHK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE 128
              L   YY    A V V D +  D    A   + +L  +    + ++ + ANK D+ 
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 113 NPNLI---MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           NP L      +V NK+DL +  +   +  EL  +  G      SA +   ++EL  ++AK
Sbjct: 109 NPGLAEKPRIVVLNKIDLLDAEERFEKLKELLKELKGKKVFPISALTGEGLDELLKKLAK 168

Query: 170 RL 171
            L
Sbjct: 169 LL 170

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQD 55

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   Y++     + V D    +    A+   +ELQR  N     + ++ + ANK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR---EELQRMLNEDELRDAVLLVFANKQD 112

Query: 127 L 127
           L
Sbjct: 113 L 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 38/189 (20%)

Query: 11  VKLVLLGDMGTGKTSLVL-RFVKGQFFDFQE-----STIGAA----FFTQVLS-----LN 55
           +K V++GD   GKT L+  R        +Q       T+ A        +VL      ++
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 56  EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-WVQELQRQGNP 114
            V++   +WDT G   +       Y  +   ++ + I S +S    K  W  E+ R   P
Sbjct: 63  GVSVSLRLWDTFGD--HDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI-RHFCP 119

Query: 115 NLIMFLVANKVDL-----EE--------KRKVKN------EEGELYAQENGLSFLETSAK 155
            + + LV  K+DL     +E         R +KN      E G   A+E G+ + ETS  
Sbjct: 120 RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVV 179

Query: 156 SAHNVNELF 164
           +   V ++F
Sbjct: 180 TQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 86  AVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144
           A++V D       +E   + ++EL+ +  P ++   V NK+DL E+    + E E   ++
Sbjct: 89  ALLVVDAGVGPGEYE--LELIEELKERKIPYIV---VINKIDLGEE----SAELEKLEKK 139

Query: 145 NGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            GL  +  SA +   ++EL   I + L E
Sbjct: 140 FGLPPIFVSALTGEGIDELKEAIIELLPE 168

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +V+++++G    GKT+++ +   G+      +TI    F  V ++    +KF +WD  GQ
Sbjct: 17  EVRILMVGLDAAGKTTILYKLKLGEVV----TTIPTIGF-NVETVEYKNLKFTMWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   YY+     + V D    +    A+   +EL+R  +     + ++ + ANK 
Sbjct: 72  DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAR---EELERMLSEDELRDAVLLVFANKQ 128

Query: 126 DL 127
           DL
Sbjct: 129 DL 130

Length = 182

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 58  TIKFDIWDTAG-----------QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ 106
                + DT G            E    +A      A   ++V D       E AK  + 
Sbjct: 45  LGPVVLIDTPGLDEEGGLGRERVEEARQVA----DRADLVLLVVDSDLTPVEEEAK--LG 98

Query: 107 ELQRQGNPNLIMFLVANKVDL-EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165
            L+ +G P   + LV NK+DL  E  + +            L  +  SA     ++EL  
Sbjct: 99  LLRERGKP---VLLVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRK 155

Query: 166 EIAKRL 171
           +IA+ L
Sbjct: 156 KIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                +   +V+++LLG    GKT++ L+    Q      S I       + ++     K
Sbjct: 6   RKLKPSSRQEVRILLLGLDNAGKTTI-LK----QLASEDISHITPTQGFNIKNVQADGFK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL----QRQGNPNL 116
            ++WD  GQ +       Y+      + V D      FE A + + EL    +  G P L
Sbjct: 61  LNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVL 120

Query: 117 IMFLVANKVDL 127
           +    ANK DL
Sbjct: 121 VF---ANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++LLG    GK++L+ +    +       T+G  F  ++L L +  +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVG--FNVEMLQLEK-HLSLTVWDVGGQEK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDL 127
             ++   Y       V V D +     + ++K ++  L+ +    + + L+ANK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KL ++G++ +GK++LV R++ G +    ES  G  F  +VL ++  +    I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYVQ-LESPEGGRFKKEVL-VDGQSHLLLIRDEGGA- 57

Query: 71  RYHSLAPMYYRGAAAAVV-VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE 128
                    + G   AV+ V+ +    SF+   +   +L    N   + + LV  +  + 
Sbjct: 58  -----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAIS 112

Query: 129 EK--RKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
               R + +    +L A     S+ ET A    NV  +F E A+++
Sbjct: 113 ASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 91  DITSMDSFERAKKWVQELQRQGNPNLI---MFLVANKVDLEEKRKVKNEEGELYAQENGL 147
           DI ++D  E  K    EL++  +P L      LV NK+DL ++ + + +   L     G 
Sbjct: 245 DIEAVDPVEDYKTIRNELEKY-SPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG 303

Query: 148 SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
                SA +   ++EL   + + L E     +
Sbjct: 304 PVFLISAVTGEGLDELLRALWELLEEARREEE 335

Length = 335

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           +++LG  G GKTS +L  +  +     ES +    F  V    +     ++ +  G +  
Sbjct: 2   ILVLGLDGAGKTS-LLHSLSSE--RSLESVVPTTGFNSVAIPTQ-DAIMELLEIGGSQNL 57

Query: 73  HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEK 130
                 Y  G+   + V D    +    A+   QEL +  Q  P+L + ++ANK DL   
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLAR---QELHQLLQHPPDLPLVVLANKQDLPAA 114

Query: 131 RKVKNEEGELYAQE 144
           R V+    EL  + 
Sbjct: 115 RSVQEIHKELELEP 128

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 20/137 (14%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLV------------LRFVKGQFFDFQESTIGAAFFTQVL 52
           +NK I+ K+V++G +G GKT+ V                       + +T+   F +  +
Sbjct: 5   ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--I 62

Query: 53  SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112
            L+E T    ++ T GQER+  +  +  RGA  A+V+ D +   +F  A++ +  L  + 
Sbjct: 63  ELDEDT-GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH-AEEIIDFLTSR- 119

Query: 113 NPNLIMFLVA-NKVDLE 128
             N I  +VA NK DL 
Sbjct: 120 --NPIPVVVAINKQDLF 134

Length = 187

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 53  SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-- 110
            + +  + F  WD  GQE   SL   YY  +   + V D T  + F  +K   +++    
Sbjct: 47  EVGKARLMF--WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNE 104

Query: 111 --QGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162
             +G P L++   ANK DL       E ++V ++   L  + +       SA     V E
Sbjct: 105 ALEGVPLLVL---ANKQDLPDALSVAEIKEVFDDCIALIGRRD-CLVQPVSALEGEGVEE 160

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 38.9 bits (92), Expect = 0.001
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 87  VVVY--DITSM---DSFERAKKWVQELQRQGNPNLI---MFLVANKVDLEEKRKVKNEEG 138
           V+V+  D++     D  E  +K  +EL +  NP L+     +VANK+DL E  +   E  
Sbjct: 239 VIVHVIDMSGSEGRDPIEDYEKINKEL-KLYNPRLLERPQIVVANKMDLPEAEENLEEFK 297

Query: 139 ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174
           E    +        SA +   ++EL Y +A+ L E 
Sbjct: 298 EKLGPK----VFPISALTGQGLDELLYAVAELLEET 329

Length = 424

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 18/124 (14%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++++LG  G GKT+++ R   G+      +TI    F  V ++    +KF +WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV----TTIPTIGF-NVETVTYKNLKFQVWDLGGQT- 54

Query: 72  YHSLAPM---YYRGAAAAVVVYDITSMDSFERAKK----WVQELQRQGNPNLIMFLVANK 124
             S+ P    YY    A + V D T  D    +K      ++E + +    L+    ANK
Sbjct: 55  --SIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVF---ANK 109

Query: 125 VDLE 128
            D+ 
Sbjct: 110 QDMP 113

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 24/97 (24%)

Query: 86  AVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEEK----RKVKN---E 136
           A+VV  +   D F+    W+  L R    NP L   LV NK DL  K     KVKN   +
Sbjct: 71  ALVVNVV---DIFDFNGSWIPGLHRFVGNNPVL---LVGNKADLLPKSVKKNKVKNWLRQ 124

Query: 137 EGELYAQENGLS----FLETSAKSAHNVNELFYEIAK 169
           E    A+E GL      L  SA+  H ++EL   I K
Sbjct: 125 E----AKELGLRPVDVVL-ISAQKGHGIDELLEAIEK 156

Length = 365

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 38.1 bits (90), Expect = 0.002
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 87  VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL-EEKRKVKNEEGELYAQEN 145
           +V++ + + +      +++ E  ++    +I  LV NK+DL ++K ++     EL    +
Sbjct: 87  LVLFVVDADEKIGPGDEFILEKLKKVKTPVI--LVLNKIDLVKDKEELLPLLEELSELMD 144

Query: 146 GLSFLETSAKSAHNVNELFYEIAKRLAE 173
               +  SA    NV+EL   IAK L E
Sbjct: 145 FAEIVPISALKGDNVDELLDVIAKYLPE 172

Length = 292

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++++++G    GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   Y++     + V D    D    A+    EL R  N     + ++ + ANK 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128

Query: 126 DL 127
           DL
Sbjct: 129 DL 130

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.98
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PTZ00099	176	rab6; Provisional	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
COG2262	411	HflX GTPases [General function prediction only]	99.77
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.77
CHL00071	409	tufA elongation factor Tu	99.77
COG0218	200	Predicted GTPase [General function prediction only	99.76
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
PRK00049	396	elongation factor Tu; Reviewed	99.75
PLN03127	447	Elongation factor Tu; Provisional	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
PLN03126	478	Elongation factor Tu; Provisional	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.7
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.7
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.7
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
COG1163	365	DRG Predicted GTPase [General function prediction	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
PRK13351	687	elongation factor G; Reviewed	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.64
PRK09866	741	hypothetical protein; Provisional	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.62
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.59
PRK00007	693	elongation factor G; Reviewed	99.58
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.53
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.52
KOG0090	238	consensus Signal recognition particle receptor, be	99.52
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.52
PRK12740	668	elongation factor G; Reviewed	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.51
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.49
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.49
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.47
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.46
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.45
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.44
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.43
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.43
PRK13768	253	GTPase; Provisional	99.43
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.41
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.41
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.41
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.41
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.41
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.4
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.39
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.39
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.38
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.37
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.36
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.35
PRK07560	731	elongation factor EF-2; Reviewed	99.35
PRK09601	364	GTP-binding protein YchF; Reviewed	99.35
PTZ00416	836	elongation factor 2; Provisional	99.34
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.31
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.3
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.27
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.26
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.26
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.26
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.26
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.24
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.24
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.24
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.23
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.21
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.21
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.2
KOG0410	410	consensus Predicted GTP binding protein [General f	99.19
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.19
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.18
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.15
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.14
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.14
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.11
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.1
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.07
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.06
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.05
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.02
KOG0460	449	consensus Mitochondrial translation elongation fac	98.99
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.93
PRK12289	352	GTPase RsgA; Reviewed	98.93
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.91
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.9
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.87
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.87
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.87
PRK00098	298	GTPase RsgA; Reviewed	98.84
PRK12288	347	GTPase RsgA; Reviewed	98.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.79
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.78
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.77
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.74
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.72
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.71
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.7
KOG1143	591	consensus Predicted translation elongation factor	98.69
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.69
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.68
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.67
PRK12288	347	GTPase RsgA; Reviewed	98.66
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.66
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.66
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.65
COG1161	322	Predicted GTPases [General function prediction onl	98.65
KOG2486	320	consensus Predicted GTPase [General function predi	98.64
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.64
COG1162	301	Predicted GTPases [General function prediction onl	98.64
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.61
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.6
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.6
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.59
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.58
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.57
PRK12289	352	GTPase RsgA; Reviewed	98.56
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.55
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.55
PRK10416	318	signal recognition particle-docking protein FtsY;	98.54
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.49
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.49
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.48
PRK14974	336	cell division protein FtsY; Provisional	98.47
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.46
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.45
cd03112	158	CobW_like The function of this protein family is u	98.41
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.41
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.41
PRK13796	365	GTPase YqeH; Provisional	98.39
COG0523	323	Putative GTPases (G3E family) [General function pr	98.37
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.37
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.37
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.35
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.34
COG3523	1188	IcmF Type VI protein secretion system component Va	98.31
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.31
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.3
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.3
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.29
PRK00098	298	GTPase RsgA; Reviewed	98.28
PRK01889	356	GTPase RsgA; Reviewed	98.27
PRK13796	365	GTPase YqeH; Provisional	98.24
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.12
cd03114	148	ArgK-like The function of this protein family is u	98.1
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.09
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.07
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.07
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.07
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.06
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.05
COG1162	301	Predicted GTPases [General function prediction onl	98.03
PRK13695	174	putative NTPase; Provisional	98.02
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.0
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.0
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.96
PRK10867	433	signal recognition particle protein; Provisional	97.94
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.94
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.94
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.93
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.93
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.9
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.9
cd03110	179	Fer4_NifH_child This protein family's function is	97.88
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.87
TIGR00959	428	ffh signal recognition particle protein. This mode	97.85
KOG2484	435	consensus GTPase [General function prediction only	97.85
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.85
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.84
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.84
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.82
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.82
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.82
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.82
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.78
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.78
PRK08118	167	topology modulation protein; Reviewed	97.78
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.76
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.74
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.74
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.74
PRK07261	171	topology modulation protein; Provisional	97.73
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.7
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.69
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.66
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.62
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.62
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.59
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.58
PRK01889	356	GTPase RsgA; Reviewed	97.56
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.55
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.52
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.52
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.52
PRK14737	186	gmk guanylate kinase; Provisional	97.52
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.51
PRK10646	153	ADP-binding protein; Provisional	97.47
cd03111	106	CpaE_like This protein family consists of proteins	97.47
PRK06217	183	hypothetical protein; Validated	97.46
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.46
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.46
PRK03839	180	putative kinase; Provisional	97.46
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.45
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.43
PRK14530	215	adenylate kinase; Provisional	97.42
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.4
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.4
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.4
PRK14738	206	gmk guanylate kinase; Provisional	97.39
PF00004	132	AAA: ATPase family associated with various cellula	97.39
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.38
COG0802	149	Predicted ATPase or kinase [General function predi	97.38
PRK13949	169	shikimate kinase; Provisional	97.38
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.38
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.38
smart00382	148	AAA ATPases associated with a variety of cellular	97.36
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.35
PRK14532	188	adenylate kinase; Provisional	97.33
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.32
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.31
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.31
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.3
PRK05480	209	uridine/cytidine kinase; Provisional	97.28
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.28
PRK00625	173	shikimate kinase; Provisional	97.27
PRK08233	182	hypothetical protein; Provisional	97.26
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.26
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.25
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.25
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.24
PRK02496	184	adk adenylate kinase; Provisional	97.24
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.24
PRK14531	183	adenylate kinase; Provisional	97.23
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.23
PTZ00088	229	adenylate kinase 1; Provisional	97.22
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.22
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.22
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.22
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.21
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.2
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.2
PLN02200	234	adenylate kinase family protein	97.19
PRK00300	205	gmk guanylate kinase; Provisional	97.19
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.19
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.19
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.19

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-42  Score=237.48  Aligned_cols=177  Identities=44%  Similarity=0.713  Sum_probs=169.1

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      .+..+|.+||+|+|.+|||||.|+.|+.++.+.+.+.++++++...+.+.+++..+++++|||+|+++|..+..++++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNE  162 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~  162 (199)
                      |++|+|||+++.+||+.+..|+.++..+...+.|.++|+||+|+.+.+.++..++..|+..++++ ++++||+++.++++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC
Q 029103          163 LFYEIAKRLAEVNPSRQT  180 (199)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~  180 (199)
                      .|..|...+.++.+....
T Consensus       163 ~F~~la~~lk~~~~~~~~  180 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHVK  180 (205)
T ss_pred             HHHHHHHHHHHhcccCCC
Confidence            999999999888655433

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-41  Score=230.36  Aligned_cols=191  Identities=57%  Similarity=0.940  Sum_probs=173.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..++||+++|..+||||||+-|+..+.|.+...++++-.+....+.+.+..+++.+|||+|+++|..+.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45899999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||+++.+||..++.|+.++.+...+++-+.+++||.|+.+.++++..++..++...+..++++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCC-------CccccccCCCCCCCCCCC
Q 029103          168 AKRLAEVNPSRQTG-------MKLHTESHGGGRRGFCCS  199 (199)
Q Consensus       168 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~cc~  199 (199)
                      .+.+.+..+....+       ..+.+.. ...+..+|||
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCC-CCcCcCCcCC
Confidence            99999887665532       2222222 3445567886

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-39  Score=225.87  Aligned_cols=173  Identities=42%  Similarity=0.723  Sum_probs=166.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +.++.+||+++|.+|||||+|+.++..+.+...+.+++++++..+++.+++..+.+++|||+|+++|.++...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|||+++..|++.+..|+..+..+....+|.++|+||+|+.+.++++...++.++.++|+.++++||++|.||.+.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 029103          166 EIAKRLAEVNPSR  178 (199)
Q Consensus       166 ~l~~~~~~~~~~~  178 (199)
                      .|.+.+..+.+..
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999999766553

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-39  Score=215.94  Aligned_cols=198  Identities=39%  Similarity=0.736  Sum_probs=173.0

Q ss_pred             CCCCCC-CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103            1 MARTSN-KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY   79 (199)
Q Consensus         1 m~~~~~-~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~   79 (199)
                      |....+ ..+.+||+++|.+|||||||+.++..+.+.+....++++++....+.+++..+++-+|||+|+++|+.+.+.|
T Consensus         1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy   80 (209)
T KOG0080|consen    1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY   80 (209)
T ss_pred             CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence            444433 3568999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      |+.+.++|+|||++.+++|..+..|++++..++ ++++..++|+||+|..+++.++.++...|++++++-++++||++.+
T Consensus        81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~  160 (209)
T KOG0080|consen   81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE  160 (209)
T ss_pred             hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence            999999999999999999999999999998887 4777778999999999889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCC-----CCCCCccccccCCC--CCCCCCC
Q 029103          159 NVNELFYEIAKRLAEVNPS-----RQTGMKLHTESHGG--GRRGFCC  198 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~cc  198 (199)
                      ++...|+.|++.+.+...-     ...+..+.+.+..+  ....+||
T Consensus       161 ~V~~~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C  207 (209)
T KOG0080|consen  161 NVQCCFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC  207 (209)
T ss_pred             cHHHHHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence            9999999999999886422     33333333333333  3345688

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-39  Score=221.50  Aligned_cols=176  Identities=44%  Similarity=0.732  Sum_probs=164.3

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~   80 (199)
                      |++.......+||+++|..+||||||+.+++-+.+...+..+++++....++.+.+..+.+++|||+|+++|..+.+.|+
T Consensus        13 ~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~   92 (221)
T KOG0094|consen   13 MATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   92 (221)
T ss_pred             ccccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc
Confidence            34455556679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +++.++|+|||+++..+|+...+|++.+...... +..+++|+||.||.+.+++...++...+++++..|.++||+.|+|
T Consensus        93 Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~N  172 (221)
T KOG0094|consen   93 RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGEN  172 (221)
T ss_pred             cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCC
Confidence            9999999999999999999999999999887665 477889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCC
Q 029103          160 VNELFYEIAKRLAEVNP  176 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~~  176 (199)
                      |+++|..|...+...+.
T Consensus       173 Vk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  173 VKQLFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHHHHhccCccc
Confidence            99999999999887743

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.7e-37  Score=223.61  Aligned_cols=165  Identities=35%  Similarity=0.689  Sum_probs=152.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888888888888888888888999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+.+++...++..+++.. ++.|+++||++|.|++++|++|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776678999999999999877888888888888875 789999999999999999999999


Q ss_pred             HHHhhC
Q 029103          170 RLAEVN  175 (199)
Q Consensus       170 ~~~~~~  175 (199)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.6e-37  Score=218.08  Aligned_cols=168  Identities=30%  Similarity=0.559  Sum_probs=154.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.+||+++|..|||||||+.++..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998887777778888887788888888999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+.++... .++.|+++|+||.|+.+.+.++..++..+++.++++|+++||++|.|++++|++|
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999999776 4689999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 029103          168 AKRLAEVNP  176 (199)
Q Consensus       168 ~~~~~~~~~  176 (199)
                      .+.+..+..
T Consensus       163 ~~~i~~~~~  171 (189)
T cd04121         163 ARIVLMRHG  171 (189)
T ss_pred             HHHHHHhcC
Confidence            998877554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-37  Score=208.76  Aligned_cols=169  Identities=43%  Similarity=0.758  Sum_probs=162.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.+|++++|..|||||+|+.+++...|.+.+..++++++-.+...+++..+++++|||+|++.+.+....|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++..++|..+..|+..++++..++..+++++||+|+...+.+..++.+.|++++++.+.++||+++++++|.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      +...+.+..
T Consensus       163 ta~~Iy~~~  171 (216)
T KOG0098|consen  163 TAKEIYRKI  171 (216)
T ss_pred             HHHHHHHHH
Confidence            988887764

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=206.85  Aligned_cols=170  Identities=37%  Similarity=0.689  Sum_probs=157.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|.+|+|||||++++...+|...+..+++.+...+...+++..+.+++|||+|+++|.++...|++.+|..+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc--cccCCHHHHHHHHHHhC-CcEEEeccCCCCCH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNV  160 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v  160 (199)
                      +|||++++.+++.+..|.+++..+..    ...|++|++||+|+.+  .++++...+..++...+ ++||++|||...+|
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999876543    5789999999999875  37889999999998765 89999999999999


Q ss_pred             HHHHHHHHHHHHhhCCC
Q 029103          161 NELFYEIAKRLAEVNPS  177 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~~~  177 (199)
                      .+.|..+.+.+...+..
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999999987754

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.2e-36  Score=217.42  Aligned_cols=165  Identities=34%  Similarity=0.671  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+..+ +..+.+.+||++|++.|..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999988888788888888877777777 7789999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF  164 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~  164 (199)
                      ||++++++++.+..|+..+....    ..++|+++|+||.|+.+.......+...+++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876532    3678999999999998666777888899999988 689999999999999999


Q ss_pred             HHHHHHHHhhC
Q 029103          165 YEIAKRLAEVN  175 (199)
Q Consensus       165 ~~l~~~~~~~~  175 (199)
                      ++|.+.+.+..
T Consensus       161 ~~l~~~l~~~~  171 (201)
T cd04107         161 RFLVKNILAND  171 (201)
T ss_pred             HHHHHHHHHhc
Confidence            99999997764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.2e-35  Score=214.60  Aligned_cols=190  Identities=35%  Similarity=0.620  Sum_probs=161.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.++|+|+|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999998887777888888887788888888889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+... ....|++||+||+|+.+.......+...++...+++|+++|+++|.|+.++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            999999999999999999998765 4678999999999998777777788888888889999999999999999999999


Q ss_pred             HHHHHhhCCCCCCC------CccccccCCCCCCCCCC
Q 029103          168 AKRLAEVNPSRQTG------MKLHTESHGGGRRGFCC  198 (199)
Q Consensus       168 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~cc  198 (199)
                      ...+..........      ......++..+++..||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            99998764332222      22333444545566787

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.6e-35  Score=215.24  Aligned_cols=174  Identities=41%  Similarity=0.734  Sum_probs=156.5

Q ss_pred             CCCCCCC--ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccc
Q 029103            1 MARTSNK--NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM   78 (199)
Q Consensus         1 m~~~~~~--~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~   78 (199)
                      |+.....  ++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..
T Consensus         1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~   80 (216)
T PLN03110          1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA   80 (216)
T ss_pred             CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence            4444444  36799999999999999999999998887777888888888888888888899999999999999999999


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      +++.++++++|||++++.+++.+..|+..+......+.|+++++||+|+...+.........++..++++++++||++|.
T Consensus        81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~  160 (216)
T PLN03110         81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT  160 (216)
T ss_pred             HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999999999988766789999999999998777778888889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029103          159 NVNELFYEIAKRLAEV  174 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~  174 (199)
                      |++++|++|+..+.+.
T Consensus       161 ~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        161 NVEKAFQTILLEIYHI  176 (216)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988663

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.3e-35  Score=210.10  Aligned_cols=185  Identities=36%  Similarity=0.597  Sum_probs=159.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++.++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999998887767788888777777888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+........|+++++||.|+.+...+....+..++...+++++++|+++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766678999999999998777777788888888889999999999999999999999999


Q ss_pred             HHhhCCCCCCCCccccccCCCCCCCCCC
Q 029103          171 LAEVNPSRQTGMKLHTESHGGGRRGFCC  198 (199)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~cc  198 (199)
                      +.++........   .+.+....+..||
T Consensus       161 ~~~~~~~~~~~~---~~~~~~~~~~~~~  185 (188)
T cd04125         161 IIKRLEEQELSP---KNIKQQFKKKNNC  185 (188)
T ss_pred             HHHHhhcCcCCc---cccccccccccCc
Confidence            987654443333   3444444455677

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.3e-35  Score=210.50  Aligned_cols=188  Identities=38%  Similarity=0.669  Sum_probs=158.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+++|++|||||||++++.++.+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999988775 34566777777777778888889999999999999998889999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ||++++++++.+..|+..+......+.|+++++||+|+...+.+...+...+...++++|+++|+++|+|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999766667777888888889999999999999999999999999


Q ss_pred             HHHhhCCCCCCCC--ccccccCCCCCCCCCC
Q 029103          170 RLAEVNPSRQTGM--KLHTESHGGGRRGFCC  198 (199)
Q Consensus       170 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~cc  198 (199)
                      .+........+..  +.+.-...+++..+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence            9988754433332  2333334555555787

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-36  Score=206.74  Aligned_cols=169  Identities=41%  Similarity=0.732  Sum_probs=163.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      .-+|.+||+++|.+|||||=|+-++..+.|.....++++++.....+.+++..++.++|||+|+++|+.+...|++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      .++|||++...+|+.+.+|+.+++.+..+++++++|+||+||.+.+.++.++++.++...++.++++||.++.+++++|.
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 029103          166 EIAKRLAEV  174 (199)
Q Consensus       166 ~l~~~~~~~  174 (199)
                      .++..+...
T Consensus       170 ~~l~~I~~~  178 (222)
T KOG0087|consen  170 RVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHH
Confidence            998888765

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.8e-35  Score=211.29  Aligned_cols=185  Identities=31%  Similarity=0.509  Sum_probs=152.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|+++|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888776666665444 3445677888899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ++++.+++.+..|+..+....   ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998886643   36789999999999987777777788888888899999999999999999999999


Q ss_pred             HHHHhhCCCCCCCCccccccCCCCCCCCCCC
Q 029103          169 KRLAEVNPSRQTGMKLHTESHGGGRRGFCCS  199 (199)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  199 (199)
                      +.+.++......+ ...+..+.++++ +|||
T Consensus       160 ~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~  188 (190)
T cd04144         160 RALRQQRQGGQGP-KGGPTKKKEKKK-RKCV  188 (190)
T ss_pred             HHHHHhhcccCCC-cCCCCCcccccc-cCce
Confidence            9887766554333 333344444444 5554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.8e-35  Score=205.43  Aligned_cols=164  Identities=43%  Similarity=0.773  Sum_probs=149.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999888777777777777777777888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ||++++++++.+..|+..+.....++.|+++|+||+|+.+.......++..+++..+++++++||++|.|+.++|.++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776678999999999999887777888899999999999999999999999999999998


Q ss_pred             HHHh
Q 029103          170 RLAE  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.4e-34  Score=210.53  Aligned_cols=170  Identities=36%  Similarity=0.699  Sum_probs=150.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +.+||+|+|++|||||||+++|.++.+.....++.+.+.....+.. ++..+.+++||++|++.+..++..++.++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            4689999999999999999999998887777778877777777766 456789999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++++++.+..|+..+..... ...|+++|+||.|+.+...+...+...+++.++++|+++|+++|.|++++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999876543 46788999999999887778888889999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 029103          167 IAKRLAEVNPSR  178 (199)
Q Consensus       167 l~~~~~~~~~~~  178 (199)
                      |.+.+.+..++.
T Consensus       161 l~~~~~~~~~~~  172 (211)
T cd04111         161 LTQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHHhhcC
Confidence            999998775553

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.6e-35  Score=209.22  Aligned_cols=169  Identities=36%  Similarity=0.583  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            479999999999999999999998888766667666544 4566778888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++++++.+..|+..+.... ..+.|+++++||.|+.+...+...++..++..++++++++||++|.|+.++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999887654 4688999999999997766677777888888889999999999999999999999


Q ss_pred             HHHHHhhCCCC
Q 029103          168 AKRLAEVNPSR  178 (199)
Q Consensus       168 ~~~~~~~~~~~  178 (199)
                      ++.+.+..+++
T Consensus       163 ~~~l~~~~~~~  173 (189)
T PTZ00369        163 VREIRKYLKED  173 (189)
T ss_pred             HHHHHHHhhcc
Confidence            99998765433

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.1e-34  Score=204.29  Aligned_cols=166  Identities=45%  Similarity=0.758  Sum_probs=151.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.+||+++|++|+|||||++++.++.+...+.++.+.++....+...+..+.+++||++|++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35799999999999999999999999988888888888887777778888899999999999999988899999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+......+.|+++++||.|+.+..+....+...++..++++++++|+++|.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777777778888888899999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.3e-35  Score=211.92  Aligned_cols=162  Identities=38%  Similarity=0.605  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+|+|.+|||||||++++..+.+.. ..++.+..+....    ...+.+.+||++|++.|..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988765 4555555443332    24678999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCCHHHHHHHHHHhC-----
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQENG-----  146 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  146 (199)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+                   .+.+...++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999998888887766567899999999999965                   56778889999998876     


Q ss_pred             ---------CcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          147 ---------LSFLETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       147 ---------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                               ++|+++||++|.||+++|..+++.+.....+
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~  195 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA  195 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                     6899999999999999999999888765433

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-35  Score=193.74  Aligned_cols=168  Identities=34%  Similarity=0.634  Sum_probs=161.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-.|++|+|+..+|||||+.++.+..+.....++.+++...+++-.....+++++|||.|++.|..+...++++++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            56789999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      ++||+++.+|+..++.|.-.+..++..+.|+++++||+|+.+++.++.+.+..+++++|..||++|++.+.+++.+|+.+
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      ...+-+.+
T Consensus       179 v~~Ic~km  186 (193)
T KOG0093|consen  179 VDIICDKM  186 (193)
T ss_pred             HHHHHHHh
Confidence            99887754

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.5e-34  Score=205.55  Aligned_cols=164  Identities=29%  Similarity=0.530  Sum_probs=145.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ++..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+++.+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            45689999999999999999999999998887888876555 45667788899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEe
Q 029103           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  152 (199)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+...++..+++.+++ +|+++
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 79999988764 6799999999999864            245888999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 029103          153 SAKSAHN-VNELFYEIAKRLA  172 (199)
Q Consensus       153 s~~~~~~-v~~~~~~l~~~~~  172 (199)
                      ||++|+| ++++|+.+++.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.8e-36  Score=196.39  Aligned_cols=166  Identities=38%  Similarity=0.672  Sum_probs=157.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .-++.+|+|.+|+|||||+-++..+.|...+..+++.+...++..+++..+++++||++|++.|..+...+++..+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||+++.+||..+.+|+.++.+.+ +..|-++|+||.|.++.+.+...++..++...++.+|++|++.+++++..|.-|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            999999999999999999998884 5788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 029103          169 KRLAEVN  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +++.+..
T Consensus       166 ~qvl~~k  172 (198)
T KOG0079|consen  166 KQVLQAK  172 (198)
T ss_pred             HHHHHHH
Confidence            8887654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.6e-34  Score=209.96  Aligned_cols=164  Identities=37%  Similarity=0.570  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888888888888888877777754 578999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ||++++++++.+..|+..+.....   .++|+++|+||.|+.+.+.+...+...++..++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887642   45789999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 029103          167 IAKRLAEV  174 (199)
Q Consensus       167 l~~~~~~~  174 (199)
                      |...+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=197.13  Aligned_cols=192  Identities=34%  Similarity=0.641  Sum_probs=167.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .|.++.+++|.+-+|||||++.+..+++.+...++.+++.+.+.+.. ++..+++++|||+|+++|.++..+|+++.=++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            47899999999999999999999999999999999999988777666 56789999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCC-ceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPN-LIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|||+++.++|+.+..|+.+..-.. .|. +-+++|++|+|+.+.++++.++++.++..+++.|+++|+++|.||++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            99999999999999999999865443 244 4457889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC-------------CCCCCccccccCCCCCCCCCCC
Q 029103          165 YEIAKRLAEVNPS-------------RQTGMKLHTESHGGGRRGFCCS  199 (199)
Q Consensus       165 ~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~cc~  199 (199)
                      +.|.+.+.....+             .-+..+.+.+..-.+.+..|||
T Consensus       166 ~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  166 DMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            9999998776543             2233444455666667778888

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2.7e-34  Score=203.02  Aligned_cols=166  Identities=31%  Similarity=0.548  Sum_probs=147.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999888777777776444 44566788889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++..++..+++.++++|+++||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998888877653 46899999999999987777888889999999999999999999999999999999


Q ss_pred             HHHHhhCC
Q 029103          169 KRLAEVNP  176 (199)
Q Consensus       169 ~~~~~~~~  176 (199)
                      +.+.+...
T Consensus       161 ~~~~~~~~  168 (172)
T cd04141         161 REIRRKES  168 (172)
T ss_pred             HHHHHhcc
Confidence            98887543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.6e-34  Score=201.13  Aligned_cols=160  Identities=38%  Similarity=0.696  Sum_probs=147.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      ++|+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999888878888888887788888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+......+.|+++|+||.|+.+.+.+...++..+++..+++|+++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887766689999999999998877788889999999999999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.4e-34  Score=201.32  Aligned_cols=163  Identities=36%  Similarity=0.656  Sum_probs=146.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999887777888877777777777778899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+........|+++++||+|+.+...........++...+++++++||++|.|+.++|++|...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766789999999999998776667777888888889999999999999999999999987


Q ss_pred             HHh
Q 029103          171 LAE  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=5.7e-34  Score=208.64  Aligned_cols=164  Identities=26%  Similarity=0.475  Sum_probs=146.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+++|.+|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            5889999999999999999999999888888888876654 456778889999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEecc
Q 029103           89 VYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSA  154 (199)
Q Consensus        89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+...++..+++.+++ .|+++||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            9999999999984 79999998764 5789999999999864            256788899999999998 6999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHhh
Q 029103          155 KSAH-NVNELFYEIAKRLAEV  174 (199)
Q Consensus       155 ~~~~-~v~~~~~~l~~~~~~~  174 (199)
                      ++|+ |++++|..++..+.+.
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9998 8999999999988765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.3e-34  Score=202.66  Aligned_cols=160  Identities=33%  Similarity=0.596  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|+|||||+.++..+.+...+.++.+..+ ......++..+++.+|||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999887888887655 445667888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc----------cCCHHHHHHHHHHhCC-cEEEeccCCCC
Q 029103           91 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR----------KVKNEEGELYAQENGL-SFLETSAKSAH  158 (199)
Q Consensus        91 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      |++++++++.+ ..|+..+.... ++.|+++|+||.|+.+..          .+...++..+++.+++ .|+++||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987764 579999999999996542          4778889999999998 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKRLA  172 (199)
Q Consensus       159 ~v~~~~~~l~~~~~  172 (199)
                      |++++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.8e-34  Score=201.22  Aligned_cols=164  Identities=44%  Similarity=0.762  Sum_probs=149.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999998888777778888777777788888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ||+++++++..+..|+..+......+.|+++++||.|+.+...+...++..++..++++++++|+++|+|++++|.+|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998776578999999999999877777788889999999999999999999999999999998


Q ss_pred             HHHh
Q 029103          170 RLAE  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+..
T Consensus       162 ~~~~  165 (166)
T cd01869         162 EIKK  165 (166)
T ss_pred             HHHh
Confidence            8753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.4e-35  Score=194.98  Aligned_cols=169  Identities=43%  Similarity=0.744  Sum_probs=159.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      +.+.+||+++|.--||||||+-+++.++|.....++....+..+..++.+....+.+|||+|+++|..+-+-|++.+|++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45799999999999999999999999999988888887778888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++|.+||+.++.|..+++......+-++||+||+|+.++++++..++..++..-|..|+++||+++.|+.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.....+..
T Consensus       170 Lt~~MiE~~  178 (218)
T KOG0088|consen  170 LTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHh
Confidence            888876654

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.5e-34  Score=203.41  Aligned_cols=167  Identities=31%  Similarity=0.571  Sum_probs=148.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC----------CeEEEEEEEeCCCccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN----------EVTIKFDIWDTAGQERYHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~l~d~~g~~~~~~~~~   77 (199)
                      ++.+||+++|++|||||||++++..+.+.+.+.++.+.++....+...          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            367999999999999999999999998888888888877766655553          3568899999999999999999


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      .+++++|++++|||+++++++..+..|+..+.... .++.|+++|+||+|+.+...+...+...++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987754 46789999999999987777788888999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      |.|++++|++|.+.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.9e-33  Score=202.37  Aligned_cols=166  Identities=43%  Similarity=0.688  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+|+|.+|||||||++++.++.+.. .+.++.+..+....+..++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5677777777777788888889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ||++++.+++.+..|+..+... ..+.|+++|+||.|+.+.    ..+...+...++...+++++++|+++++|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999988765 457899999999998532    34445667778888889999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 029103          166 EIAKRLAEVNPS  177 (199)
Q Consensus       166 ~l~~~~~~~~~~  177 (199)
                      +|.+.+.+....
T Consensus       160 ~i~~~~~~~~~~  171 (193)
T cd04118         160 KVAEDFVSRANN  171 (193)
T ss_pred             HHHHHHHHhccc
Confidence            999999876544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=8.2e-34  Score=203.75  Aligned_cols=162  Identities=28%  Similarity=0.498  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|..|||||||+.++..+.+.+.+.++.+..+. ....+++..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            589999999999999999999999888778888775543 4456788889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhC-CcEEEeccC
Q 029103           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAK  155 (199)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~  155 (199)
                      ||++++++++.+. .|+..+... .++.|+++|+||.|+.+..            .+...++..+++.++ ++|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 688877765 4689999999999996532            356678888999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 029103          156 SAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       156 ~~~~v~~~~~~l~~~~~~  173 (199)
                      +|+|++++|++|++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=6.7e-34  Score=201.77  Aligned_cols=161  Identities=29%  Similarity=0.520  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999988877778776555 35667788899999999999999999999999999999999


Q ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103           90 YDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAK  155 (199)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  155 (199)
                      ||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+            .+.+...++..+++.+++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 79999988764 6899999999999854            235788899999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 029103          156 SAHN-VNELFYEIAKRLA  172 (199)
Q Consensus       156 ~~~~-v~~~~~~l~~~~~  172 (199)
                      +|++ ++++|..+++...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1e-33  Score=198.20  Aligned_cols=161  Identities=39%  Similarity=0.743  Sum_probs=152.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|++|||||||+++|.++.+.+.+.++.+.+........++..+.+.+||++|++.|..+...++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999988888888899999999999999999999999999999888999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++++++++.+..|++.+........|+++++||.|+.+.+.++..++..+++.++.+|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988776899999999999998889999999999999999999999999999999999999887


Q ss_pred             H
Q 029103          172 A  172 (199)
Q Consensus       172 ~  172 (199)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=8.9e-34  Score=199.40  Aligned_cols=162  Identities=29%  Similarity=0.648  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGN-----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+.+.......+...++...+++++++|+++|+|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999887653     5799999999999976566677777888888889999999999999999999


Q ss_pred             HHHHHHH
Q 029103          166 EIAKRLA  172 (199)
Q Consensus       166 ~l~~~~~  172 (199)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2e-33  Score=197.32  Aligned_cols=163  Identities=44%  Similarity=0.773  Sum_probs=148.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.+||+++|.+|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..++..++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999888877777888888888888888888899999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||++++.+++.+..|+..+......+.|+++|+||.|+.+..+....+...++...+++++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887666799999999999987777777788888888899999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.6e-33  Score=197.45  Aligned_cols=166  Identities=43%  Similarity=0.779  Sum_probs=150.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.+||+++|.+|||||||++++.++.+.....++.+.+.....+...+....+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999998887777778888887888888888889999999999999998899999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+.....++.|+++++||.|+.+.......+...++...++.++++|++++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988767889999999999998766777788888888899999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=7.5e-33  Score=201.79  Aligned_cols=170  Identities=39%  Similarity=0.660  Sum_probs=145.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      ...+..+||+|+|.+|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            34456899999999999999999999987764 45677777777777778888899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           85 AAVVVYDITSMDSFERAKK-WVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++++|||++++++++.+.. |...+.... ..+.|+++|+||.|+.........+...++..+++.|+++|++++.|+++
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999875 655555433 35678999999999987667777788888888999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 029103          163 LFYEIAKRLAEVN  175 (199)
Q Consensus       163 ~~~~l~~~~~~~~  175 (199)
                      +|++|.+.+....
T Consensus       168 l~~~l~~~~~~~~  180 (211)
T PLN03118        168 CFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999997754

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.5e-33  Score=199.58  Aligned_cols=164  Identities=26%  Similarity=0.483  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-----ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.+++.+..|+..+........| ++|+||+|+...     ......+...+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555677 678999998521     11123456778888899999999999999999999


Q ss_pred             HHHHHHHhhC
Q 029103          166 EIAKRLAEVN  175 (199)
Q Consensus       166 ~l~~~~~~~~  175 (199)
                      +|.+.+.+..
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999887643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2e-33  Score=196.85  Aligned_cols=161  Identities=35%  Similarity=0.594  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999998887766666654 34455667788889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+++.++.+++++||++|.|+.++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887754 46899999999999977666667777788888889999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.8e-33  Score=200.51  Aligned_cols=164  Identities=31%  Similarity=0.533  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+|+|++|||||||+++|.++.+...+.++.+..+... +... +..+.+.+||++|++.+..++..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999888777777666655443 4443 6778999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 029103           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL  163 (199)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  163 (199)
                      ||++++++++.+. .|+..+... .++.|+++++||.|+...    ..+...+...++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 588777654 467899999999998653    24567788888888888 8999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 029103          164 FYEIAKRLAEVNP  176 (199)
Q Consensus       164 ~~~l~~~~~~~~~  176 (199)
                      |+.+.+.+.....
T Consensus       159 f~~l~~~~~~~~~  171 (187)
T cd04132         159 FDTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987553

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3e-33  Score=196.48  Aligned_cols=162  Identities=43%  Similarity=0.744  Sum_probs=145.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            57899999999999999999999888877777788777777778888888899999999999999889999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+..+.....+..+++..+. .++++|+++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999877667899999999999987777777788888888775 68999999999999999999


Q ss_pred             HHH
Q 029103          168 AKR  170 (199)
Q Consensus       168 ~~~  170 (199)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=9.7e-33  Score=200.90  Aligned_cols=168  Identities=40%  Similarity=0.748  Sum_probs=152.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..++..+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998887777788888887778888888889999999999999989999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+........|+++++||.|+.+...+...+...+++.++++++++|++++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877666789999999999998877788888899999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      ++.+.++.
T Consensus       164 ~~~~~~~~  171 (210)
T PLN03108        164 AAKIYKKI  171 (210)
T ss_pred             HHHHHHHh
Confidence            99987653

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.1e-33  Score=195.61  Aligned_cols=160  Identities=44%  Similarity=0.757  Sum_probs=146.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999998887777788888888888888888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++.++..+..|+..+.....++.|+++++||.|+.+...+...+...++...++.++++|++++.|+.++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999887767889999999999998777778888899999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=5.2e-33  Score=195.10  Aligned_cols=162  Identities=35%  Similarity=0.620  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++..+.+...+.++.+..+ .......+..+.+.+||+||++.+..++..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998877666666665444 34566778888999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+++.++++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887653 47899999999999987666666777788888899999999999999999999999


Q ss_pred             HHHH
Q 029103          169 KRLA  172 (199)
Q Consensus       169 ~~~~  172 (199)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.8e-33  Score=202.73  Aligned_cols=165  Identities=34%  Similarity=0.540  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56899999999999999999999999888888888888888877777788899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+... ..+.|+++|+||.|+.+. .+..... .++...++.|+++||++|.|+.++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            999999999999999999999876 467999999999998643 3334444 6777788999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99997653

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=9.6e-33  Score=193.52  Aligned_cols=163  Identities=48%  Similarity=0.857  Sum_probs=148.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|+|||||++++.+..+.....++.+.++....+...+....+.+||+||++.+...+..++..+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988887777788888887788888888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++.+++.+..|+..+.....+++|+++++||.|+....+.....+..+...++++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888766789999999999988766677777888888899999999999999999999999998


Q ss_pred             HHh
Q 029103          171 LAE  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            865

Rab GTPases are implicated in vesicle trafficking.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=5.5e-33  Score=194.49  Aligned_cols=159  Identities=35%  Similarity=0.649  Sum_probs=142.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +||+++|.+|+|||||++++.++.+.+.+.++.+.++......+.  +..+.+.+||+||++.+..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988887778888888776666666  778899999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||++++++++.+..|+..+... ..+.|+++++||.|+.....+...++..+++..+++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999988765 46899999999999987777777888889999999999999999999999999987


Q ss_pred             HH
Q 029103          169 KR  170 (199)
Q Consensus       169 ~~  170 (199)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.3e-32  Score=194.16  Aligned_cols=162  Identities=33%  Similarity=0.626  Sum_probs=143.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|.+|||||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.|..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888887888888888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccc--CCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ++++++++.+..|+..+.... ....|+++|+||.|+.+..+  ....++..++..++.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876543 34578999999999865433  235566777788889999999999999999999999


Q ss_pred             HHHHh
Q 029103          169 KRLAE  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            99876

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.7e-32  Score=192.89  Aligned_cols=160  Identities=36%  Similarity=0.615  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++..+.+...+.++.+.+........+...+.+.+||++|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777888888877777777888899999999999999988899999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+..... +.|+++++||+|+.+. ... .....++...+++++++||++|+|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987754 8999999999999743 332 33456677778899999999999999999999998


Q ss_pred             HHh
Q 029103          171 LAE  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.1e-32  Score=195.20  Aligned_cols=159  Identities=28%  Similarity=0.492  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++..+.+...+.++.+..+. ..+...+..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999998887777787765554 34567788899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKS  156 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      |++++++++.+. .|+..+... .++.|+++|+||.|+.+.            +.+...++..+++..+ +.|+++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 588888765 357999999999998543            4566777888888877 6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029103          157 AHNVNELFYEIAKRL  171 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~  171 (199)
                      |+|++++|+.++...
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.3e-32  Score=199.25  Aligned_cols=164  Identities=26%  Similarity=0.489  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+|+|.+|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++.+|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999888888888876654 4567788899999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK  155 (199)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  155 (199)
                      ||++++++++.+. .|...+... .++.|+++|+||+|+.+.            ..+...++..++++.++ +|+++||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            9999999999984 677666544 578999999999998542            13667789999999995 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHhhC
Q 029103          156 SAHN-VNELFYEIAKRLAEVN  175 (199)
Q Consensus       156 ~~~~-v~~~~~~l~~~~~~~~  175 (199)
                      ++++ |+++|...+.....+.
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhcc
Confidence            9885 9999999999876643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-33  Score=185.42  Aligned_cols=169  Identities=42%  Similarity=0.719  Sum_probs=160.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+-+||+++|+.|+|||.|++++..+.|++....+++++.+.++..+++..+++++|||+|+++|.++..+|++.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++-..+|+-+.+|+.++.++.+....-++|+||+|+.+.++++...+++|.......|+++||+..++++.+|..
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            99999999899999999999999998888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      +...+....
T Consensus       164 ~a~rli~~a  172 (213)
T KOG0095|consen  164 LACRLISEA  172 (213)
T ss_pred             HHHHHHHHH
Confidence            988776544

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.4e-32  Score=192.70  Aligned_cols=161  Identities=36%  Similarity=0.613  Sum_probs=140.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++..+.+.+.+.++.+ +.......+++..+.+.+||++|.+++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999888776666554 44556677788888999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.+...+...+...++...+++++++||+++.|+.++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887754 36899999999999976666666677888888889999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.5e-32  Score=191.11  Aligned_cols=160  Identities=33%  Similarity=0.551  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++..+.+.+...++.+.+........++..+.+.+||++|++.|..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887776777766776777777888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++.+++.+..|+..+... .++.|+++++||.|+...   ...+...++...+++++++|+++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999998765 457899999999998532   1334456666778999999999999999999999998


Q ss_pred             HHhh
Q 029103          171 LAEV  174 (199)
Q Consensus       171 ~~~~  174 (199)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-33  Score=185.56  Aligned_cols=170  Identities=41%  Similarity=0.695  Sum_probs=160.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      +..++-+|++++|+.|.|||.|++++..+++.+....++++++..+.+++.+..+++++|||+|+++|.+..++|++.+-
T Consensus         4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA   83 (214)
T KOG0086|consen    4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   83 (214)
T ss_pred             hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            34567899999999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      +.++|||+++.++|+.+..|+...+....+++-+++++||.|+.++++++..++..|+++..+.+.++|+++|++++|.|
T Consensus        84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF  163 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  163 (214)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 029103          165 YEIAKRLAEV  174 (199)
Q Consensus       165 ~~l~~~~~~~  174 (199)
                      -.....+..+
T Consensus       164 l~c~~tIl~k  173 (214)
T KOG0086|consen  164 LKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHH
Confidence            8766666544

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=3.5e-32  Score=195.10  Aligned_cols=163  Identities=36%  Similarity=0.566  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      .||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999998887777777665543 44556777889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKS  156 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      |++++++++.+. .|+..+... .++.|+++|+||+|+.+..            .+...++..++...+ ++|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999885 688888765 4589999999999986543            244556677777766 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhC
Q 029103          157 AHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~~  175 (199)
                      |.|++++|.+|.+.+....
T Consensus       159 ~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         159 NRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999999999887533

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.4e-32  Score=191.01  Aligned_cols=160  Identities=46%  Similarity=0.779  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+++.+||+||++.+...+..++..+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999998887777888888888888888888889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+......+.|+++++||+|+.+.......+...++...+++++++|+++++|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877655689999999999997666677777888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.3e-32  Score=190.12  Aligned_cols=162  Identities=70%  Similarity=1.055  Sum_probs=147.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|++|||||||+++|.++.+.....++.+..+......+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999888776777777777778888889899999999999999988888899999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      +|++++++++....|+..+.....+..|+++++||+|+.+.......+...+...+++.++++|+++|.|+.++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998876688999999999999866666777888888888999999999999999999999998


Q ss_pred             HH
Q 029103          170 RL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.7e-32  Score=191.69  Aligned_cols=159  Identities=36%  Similarity=0.506  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+..++..++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999888766666665444 444556777889999999999999988888999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |++++++++.+..|+..+....   .++.|+++|+||.|+...+.+...++..++..+++.++++||++|+|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999888776643   2679999999999997766677777788888889999999999999999999999


Q ss_pred             HHH
Q 029103          168 AKR  170 (199)
Q Consensus       168 ~~~  170 (199)
                      +++
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5e-32  Score=191.17  Aligned_cols=162  Identities=35%  Similarity=0.626  Sum_probs=142.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|++|||||||++++.++.+.+...++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45799999999999999999999988887777777777777777778889999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNE  162 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~  162 (199)
                      +|||++++++++.+..|+..+....    ..+.|+++++||.|+. .......+...++..++ .+++++||++|+|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999998876643    2578999999999986 44566778888888887 4799999999999999


Q ss_pred             HHHHHHHH
Q 029103          163 LFYEIAKR  170 (199)
Q Consensus       163 ~~~~l~~~  170 (199)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=3e-32  Score=191.14  Aligned_cols=162  Identities=38%  Similarity=0.622  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++.++.+...+.++.. +.......+++..+.+.+||+||++++..++..++..+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999998887665555554 333455667788899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |++++++++.+..|+..+.+.. ..+.|+++++||+|+.+...........++...+.+++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988876653 357899999999999876666777788888888999999999999999999999998


Q ss_pred             HHHh
Q 029103          170 RLAE  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+..
T Consensus       160 ~~~~  163 (164)
T smart00173      160 EIRK  163 (164)
T ss_pred             HHhh
Confidence            7653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.7e-32  Score=191.91  Aligned_cols=159  Identities=28%  Similarity=0.518  Sum_probs=137.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|.+|||||||+.++..+.+...+.++.. ..+......++..+.+.+|||+|++.|..+++.++.++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            37999999999999999999999888777777764 34444556788889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK  155 (199)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  155 (199)
                      ||++++++++.+. .|+..+... .++.|+++|+||.|+.+.            ..+...++..++..++. +++++||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999985 688887765 468999999999998542            24677888889998884 89999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029103          156 SAHNVNELFYEIAKR  170 (199)
Q Consensus       156 ~~~~v~~~~~~l~~~  170 (199)
                      +|+|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=6.7e-32  Score=190.56  Aligned_cols=162  Identities=36%  Similarity=0.666  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCCEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVV   88 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~~~~~~~~~d~~i~   88 (199)
                      .++|+++|++|||||||++++..+.+.....++.+.++.......++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999988877777888888888888888888999999999998886 578888999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC---CCCHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF  164 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~  164 (199)
                      |||++++.+++.+..|+..+.... ..+.|+++++||.|+....++.......++..++++|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887754 46799999999999988777888888889999999999999999   88999999


Q ss_pred             HHHHHHH
Q 029103          165 YEIAKRL  171 (199)
Q Consensus       165 ~~l~~~~  171 (199)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=8.9e-32  Score=188.66  Aligned_cols=161  Identities=33%  Similarity=0.546  Sum_probs=138.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|++|+|||||++++.++.+...+.++.... ......+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            5899999999999999999999887766555555433 344455777788999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.........+...++...+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 46789999999999987666667778888888889999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      ..+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=8.1e-32  Score=188.34  Aligned_cols=160  Identities=33%  Similarity=0.584  Sum_probs=137.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999887766666655433 45566777788899999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||+++..+++.+..|+..+.... ..+.|+++++||+|+.+ ......+...++...+++++++||++|.|++++|++|.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999988988887654 46889999999999876 34456677778888899999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=7.2e-32  Score=194.34  Aligned_cols=167  Identities=26%  Similarity=0.307  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccccccC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRG   82 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~~~   82 (199)
                      +||+|+|.+|||||||++++.++.+...+.++.+.+.....+..++..+.+.+|||||.+.+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999998887777777766666666777888899999999997654321        2234789


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCC
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH  158 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  158 (199)
                      +|++|+|||++++++++.+..|+..+.+..   ..++|+++|+||.|+...+.....+...++. .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887653   4779999999999997665566666666644 568999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCC
Q 029103          159 NVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~~~  177 (199)
                      |++++|+.+++.+..+-+.
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999888865444

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.4e-31  Score=185.98  Aligned_cols=161  Identities=48%  Similarity=0.832  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|+|||||++++.++.+.....++.............+....+.+||+||++.+..+++.++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988876655666656666666777777889999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++++++.+..|+..+......+.|+++++||.|+....+....+...+....+.+++++|+++++|+.++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888766689999999999998767777777888888889999999999999999999999876


Q ss_pred             H
Q 029103          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.8e-31  Score=187.23  Aligned_cols=160  Identities=29%  Similarity=0.526  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +||+++|++|||||||++++..+  .+...+.++.+.++........ +..+.+.+||+||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5666677777777766666664 56789999999999999888999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++.......+....+++++++|++++.|+.++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887763 678999999999997766667767777777888999999999999999999999


Q ss_pred             HHHH
Q 029103          168 AKRL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=5.8e-31  Score=185.92  Aligned_cols=165  Identities=42%  Similarity=0.735  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++.+..+.....++.+.++........+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988877767777777777777778888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.+++.+..|...+.....    .+.|+++++||+|+.............+....+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888887655432    379999999999998655556677777777777 7899999999999999999


Q ss_pred             HHHHHHHhhC
Q 029103          166 EIAKRLAEVN  175 (199)
Q Consensus       166 ~l~~~~~~~~  175 (199)
                      +|.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999988753

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.9e-31  Score=191.03  Aligned_cols=156  Identities=33%  Similarity=0.585  Sum_probs=138.9

Q ss_pred             EcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH
Q 029103           16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM   95 (199)
Q Consensus        16 ~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (199)
                      +|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888777888888888888888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103           96 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus        96 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .+++.+..|+..+.... .+.|+++|+||.|+... .+.... ..++...++.|+++||++|.|+.++|++|++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998763 68999999999998643 333333 467778899999999999999999999999998764

Ran is involved in the active transport of proteins through nuclear pores.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.9e-31  Score=187.23  Aligned_cols=159  Identities=32%  Similarity=0.558  Sum_probs=136.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (199)
                      |+|+|++|||||||++++.++.+...+.++.... +......++..+.+.+||++|++.|..++..++..+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999988877666665443 344566778888999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEeccCCCC
Q 029103           93 TSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAH  158 (199)
Q Consensus        93 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      +++++++.+. .|+..+... .++.|+++++||.|+.+..            .+...++..+++..+. .++++|+++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 688888765 4689999999999986522            3667778889998886 89999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 029103          159 NVNELFYEIAKRLAE  173 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~  173 (199)
                      |++++|+.|++.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.2e-30  Score=183.95  Aligned_cols=164  Identities=42%  Similarity=0.741  Sum_probs=145.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.++|+++|++|+|||||++++.++.+.+...++.+.+.....+...+..+.+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988777666777777777777888888889999999999999988889999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++++||.|+.+..++.......+......+++++|+++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998887766789999999999998777777777777887778899999999999999999999


Q ss_pred             HHHH
Q 029103          168 AKRL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=8.2e-31  Score=183.32  Aligned_cols=159  Identities=41%  Similarity=0.753  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988877667788887777777777888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |++++.+++.+..|+..+.... ..+.|+++++||+|+.. ......+...++...+++++++|+++|.|+.++++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999988765 47899999999999974 344567788888889999999999999999999999887


Q ss_pred             H
Q 029103          170 R  170 (199)
Q Consensus       170 ~  170 (199)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=8.8e-31  Score=184.49  Aligned_cols=162  Identities=31%  Similarity=0.568  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++.++.+...+.++.+.. .......++..+.+.+||+||+++|..+++.++..++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999888776666666543 356666778889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      ||++++++++.+..|...+.... ..+.|+++++||.|+.+.......+...+++.++ ++++++||+++.|++++|++|
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999998887643 4689999999999998777777777777888877 789999999999999999999


Q ss_pred             HHHHH
Q 029103          168 AKRLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            87654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=100.00  E-value=5.7e-31  Score=183.06  Aligned_cols=158  Identities=52%  Similarity=0.889  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++.++.+.....++.+.++.............+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998888877888888888888888888899999999999999889999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |++++++++.+..|+..+........|+++++||.|+....+....+...+...++.+++++|++++.|+.++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887667899999999999975566677888888888899999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.9e-31  Score=185.15  Aligned_cols=163  Identities=21%  Similarity=0.250  Sum_probs=139.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..+||+++|.+|||||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..++..++..+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4789999999999999999999998887 777788877777677777888889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+..  ..++|+++|+||.|+.+.......+...+++.+++ .++++||++++|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            99999999999998888876633  24789999999999965544433445677777777 4799999999999999999


Q ss_pred             HHHHHHh
Q 029103          167 IAKRLAE  173 (199)
Q Consensus       167 l~~~~~~  173 (199)
                      |.+.+..
T Consensus       161 l~~~~~~  167 (169)
T cd01892         161 LATAAQY  167 (169)
T ss_pred             HHHHhhC
Confidence            9998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=8.8e-31  Score=194.23  Aligned_cols=161  Identities=25%  Similarity=0.423  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||+++++++.+...+.++.+ +.......+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999998888776666665 455566777888899999999999998888888889999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCH
Q 029103           91 DITSMDSFERAKKWVQELQRQ---------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV  160 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  160 (199)
                      |++++++++.+..|+..+...         ...+.|+++|+||+|+.+...+...+...+... .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         235799999999999976556666666666553 4678999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029103          161 NELFYEIAKRLA  172 (199)
Q Consensus       161 ~~~~~~l~~~~~  172 (199)
                      +++|++|.+.+.
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998763

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=1.2e-30  Score=187.39  Aligned_cols=158  Identities=25%  Similarity=0.417  Sum_probs=127.8

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHHhCC-----CCCCCcCccce-eEEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVL-RFVKGQ-----FFDFQESTIGA-AFFTQV--------LSLNEVTIKFDIWDTAGQERYHS   74 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~v~l~d~~g~~~~~~   74 (199)
                      .+||+++|.+|||||||+. ++.++.     +...+.++.+. +.+...        ..+++..+.+.+|||+|++.+  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 555433     23444555542 222221        246788899999999998753  


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCC
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVK  134 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  134 (199)
                      ....+++++|++|+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999996 6988887663 5789999999999864                   36778


Q ss_pred             HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          135 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      ..++..+++.++++|+++||++|.|++++|+.++++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            889999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.98  E-value=7.9e-31  Score=184.19  Aligned_cols=160  Identities=31%  Similarity=0.490  Sum_probs=134.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cccccccccCCCEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~~~~~~~~~~d~~i~v~   90 (199)
                      ||+++|++|||||||+++++.+.+...+.++....+ .....+++..+.+.+||+||++.+ ...+..++..+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998777655555553333 455667888889999999998853 445677889999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC-CCHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEI  167 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~l  167 (199)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+.+...+...+...++...+++|+++|++++ .|++++|+.|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887754  457999999999999777777778888888888999999999999 5999999999


Q ss_pred             HHHHH
Q 029103          168 AKRLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=2.1e-30  Score=183.44  Aligned_cols=157  Identities=26%  Similarity=0.502  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|+|||||++++.++.+...+.++. .+.......+++..+.+.+||+||++.+..++..++.++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877666654 4455556777888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKS  156 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      |++++++++.+. .|+..+... .++.|+++++||.|+..            .+.+...++..+++..+. .|+++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 688887754 45789999999999863            345677788889998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 029103          157 AHNVNELFYEIAK  169 (199)
Q Consensus       157 ~~~v~~~~~~l~~  169 (199)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=1.4e-30  Score=181.46  Aligned_cols=153  Identities=21%  Similarity=0.396  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+.++..+.+.+.+.+. ... +...+.+++..+.+.+||++|.+.     ..++..+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988776654443 222 345677788888999999999864     34678899999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |++++++++.+..|+..+..... .+.|+++++||.|+.  ..+.+...++..+++.. ++.|+++||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987753 678999999999985  35677778888888776 589999999999999999999


Q ss_pred             HHHH
Q 029103          167 IAKR  170 (199)
Q Consensus       167 l~~~  170 (199)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=1.9e-30  Score=190.07  Aligned_cols=163  Identities=30%  Similarity=0.390  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-CCCEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-GAAAAVV   88 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~-~~d~~i~   88 (199)
                      +||+++|++|||||||++++..+.+. ..+.++.+.+.....+.+++....+.+||++|.+.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 55566665566677777888889999999999882  23344556 8999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++...+++|+++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887754 3689999999999998777777777888888889999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+....
T Consensus       159 ~~~~~~~~  166 (221)
T cd04148         159 VRQIRLRR  166 (221)
T ss_pred             HHHHHhhh
Confidence            99996543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=3.2e-30  Score=182.56  Aligned_cols=159  Identities=28%  Similarity=0.506  Sum_probs=134.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|+|||||++++..+.+...+.++.. +.......+++..+.+.+||++|++.|...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888766665554 333445667888888999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS  156 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      |++++.+++.+. .|+..+... .++.|+++++||+|+.+.            ..+...++..+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 687777665 678999999999998543            24566778888888886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029103          157 AHNVNELFYEIAKRL  171 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~  171 (199)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.3e-33  Score=184.67  Aligned_cols=170  Identities=32%  Similarity=0.556  Sum_probs=154.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC---------CeEEEEEEEeCCCcccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---------EVTIKFDIWDTAGQERYHSLAPM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~l~d~~g~~~~~~~~~~   78 (199)
                      ++-+|.+.+|.+||||||++.++..++|.....++.+++...+....+         +..+.+++|||+|+++|.++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            467789999999999999999999999999899999998877666552         34578999999999999999999


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      |++.+=+++++||+++..||-.++.|+.++.-+. +.++-+++++||.|+++.+.+.+.++..+++++++|||++||-+|
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence            9999999999999999999999999999988765 566778999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCCC
Q 029103          158 HNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~~~~~  177 (199)
                      .++++..+.|...++++..+
T Consensus       167 ~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887544

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.8e-30  Score=168.75  Aligned_cols=167  Identities=42%  Similarity=0.754  Sum_probs=158.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+-+|-+++|.-|+|||.|++.+...+|-.....++++++-.+.+.+.+..+++++||++|+++|....+++++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            57889999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      .|||++.+.++..+..|+...++..+++..+++++||.|+.++++++.++++.|+.++|+.++++|+++|.++++.|-.-
T Consensus        89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~  168 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET  168 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ...+.+.
T Consensus       169 akkiyqn  175 (215)
T KOG0097|consen  169 AKKIYQN  175 (215)
T ss_pred             HHHHHHh
Confidence            7777665

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.6e-29  Score=181.08  Aligned_cols=162  Identities=31%  Similarity=0.540  Sum_probs=133.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +.||+|+|++|+|||||++++..+.+.+...++....+ .....+++..+.+.+||++|++.+....+.++..+|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            36899999999999999999998777665555443333 33455677778899999999998887777788999999999


Q ss_pred             EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc----------cccCCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103           90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE----------KRKVKNEEGELYAQENGL-SFLETSAKSA  157 (199)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  157 (199)
                      ||+++.++++.+. .|+..+... .++.|+++|+||.|+.+          ...+...+...+++..+. +|+++||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986 688888765 35799999999999854          234455677888888885 7999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029103          158 HNVNELFYEIAKRLAE  173 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~  173 (199)
                      .|++++|+++.+.+..
T Consensus       159 ~~v~~~f~~l~~~~~~  174 (187)
T cd04129         159 EGVDDVFEAATRAALL  174 (187)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999988866

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.1e-29  Score=177.96  Aligned_cols=162  Identities=33%  Similarity=0.600  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            489999999999999999999888776666555433 3455667888899999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+...++++++++|++++.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999998888877653 368999999999999765555667777888888999999999999999999999998


Q ss_pred             HHHh
Q 029103          170 RLAE  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            8754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=3.2e-32  Score=176.02  Aligned_cols=162  Identities=40%  Similarity=0.728  Sum_probs=151.7

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103           14 VLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (199)
                      +++|.+++|||.|+-++..+.|. ....++.++++....+..++..+++++|||+|+++|.+....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999998887765 45688999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103           93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      .+..||+..+.|+.++.++......+.+++||+|+..++.+...+.+.++..+++|+.++|+++|.+++-.|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888889999999999888999999999999999999999999999999999999999887


Q ss_pred             hhC
Q 029103          173 EVN  175 (199)
Q Consensus       173 ~~~  175 (199)
                      +..
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            653

>cd00876 Ras Ras family

Probab=99.97  E-value=1.1e-29  Score=177.11  Aligned_cols=158  Identities=37%  Similarity=0.631  Sum_probs=137.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|++|||||||++++.+..+.....++.. ..........+..+.+.+||+||++.+...+..++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998776665555555 4455556666677899999999999988888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      ++++++++.+..|+..+..... ...|+++++||+|+..........+..+...++.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877654 689999999999998766777788888888888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.6e-29  Score=182.50  Aligned_cols=163  Identities=26%  Similarity=0.411  Sum_probs=132.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|.+|||||||++++.++.+...+.++.. ........+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999887765555543 3444556667777899999999999998888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ++++.+++.+..|+..+..... .+.|+++++||.|+.. ...+.......... ..+.+++++|+++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877643 5799999999999865 34444434333332 4567899999999999999999999


Q ss_pred             HHHHhhC
Q 029103          169 KRLAEVN  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +.+....
T Consensus       160 ~~~~~~~  166 (198)
T cd04147         160 RQANLPY  166 (198)
T ss_pred             HHhhccc
Confidence            9886443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=4.9e-29  Score=177.47  Aligned_cols=164  Identities=34%  Similarity=0.524  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      .||+++|++|+|||||++++.++.+...+.++..... .......+..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877655555544333 445566777888999999999999888889999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |.++..+++.+..|+..+.+.. ..+.|+++++||+|+...+.....+...+....+++++++|++++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999888877654 467899999999999766666666677777888899999999999999999999999


Q ss_pred             HHHhhC
Q 029103          170 RLAEVN  175 (199)
Q Consensus       170 ~~~~~~  175 (199)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            988754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=9.4e-30  Score=181.59  Aligned_cols=165  Identities=24%  Similarity=0.319  Sum_probs=128.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +.++|+++|.+|||||||++++..+.+... .++.+.......... ++..+.+.+||++|++.+..+|..++..+|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998776543 455555554444433 346788999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhCCcEEEeccCCCCCH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAHNV  160 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v  160 (199)
                      +|+|++++.+++....|+..+.... ..+.|+++++||+|+.+.  ....+...+..      ..+++++++||++|.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999999988888887776543 357999999999998642  22232333221      11346899999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 029103          161 NELFYEIAKRLAEVNP  176 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (199)
                      +++|++|.+.+.+.++
T Consensus       159 ~~l~~~l~~~l~~~~~  174 (183)
T cd04152         159 QEGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999976543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.7e-29  Score=179.83  Aligned_cols=157  Identities=20%  Similarity=0.352  Sum_probs=123.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|.+|||||||++++..+.+.. ..++.+....  .  ++...+.+++||+||++.+..+|..++.++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            346899999999999999999998776653 4555554432  2  2334578999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--------cEEEeccCCCC
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--------SFLETSAKSAH  158 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~  158 (199)
                      +|||++++++++....++..+... ...+.|++|++||+|+....  ...   ++....++        .++++||++|+
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAA---EITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHH---HHHHHhCccccCCCceEEEeccCCCCC
Confidence            999999999998887777766443 23678999999999987543  222   23333332        45689999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029103          159 NVNELFYEIAKRLAEV  174 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~  174 (199)
                      |+.++|+||.+.+..+
T Consensus       165 gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        165 GLYEGLDWLSNNIANK  180 (181)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999988764

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=2.2e-30  Score=181.72  Aligned_cols=152  Identities=22%  Similarity=0.317  Sum_probs=125.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (199)
                      |+++|++|||||||++++.++.+...+.++.+...    ..++...+.+.+||++|++.+..++..+++++|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999998877766667666442    23455678899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH----HHHHHHHHHhCCcEEEeccCC------CCCHHH
Q 029103           93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKS------AHNVNE  162 (199)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~~  162 (199)
                      +++.++...+.|+..+.... ++.|+++++||.|+........    .....++++.++.++++||++      ++|+++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999888888876543 6899999999999876543322    223555666788899999998      999999


Q ss_pred             HHHHHHH
Q 029103          163 LFYEIAK  169 (199)
Q Consensus       163 ~~~~l~~  169 (199)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.1e-28  Score=174.74  Aligned_cols=159  Identities=35%  Similarity=0.570  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      .||+++|++|||||||++++.++.+.+.+.++....+. ..+.+++..+.+.+||++|++.|...+..++..+|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999998887766666654443 45567788889999999999999988888899999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS  156 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      |++++++++.+. .|+..+... ..+.|+++++||.|+.+.            ..+...++..++...+. +++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 687777654 468899999999998542            22345566777777664 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029103          157 AHNVNELFYEIAKRL  171 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~  171 (199)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.1e-29  Score=178.83  Aligned_cols=154  Identities=21%  Similarity=0.371  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|++|||||||+++|..+.+.. +.++.+.++.  ...  ...+.+.+||++|++.+..++..++..+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            47899999999999999999998766543 4455555443  222  346789999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~  162 (199)
                      |||++++.+++....|+..+... ...+.|+++++||+|+.+.  ....+......     ...+.++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            99999999998888777666543 2467899999999998642  33444444332     1234689999999999999


Q ss_pred             HHHHHHH
Q 029103          163 LFYEIAK  169 (199)
Q Consensus       163 ~~~~l~~  169 (199)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=6.1e-30  Score=181.28  Aligned_cols=157  Identities=22%  Similarity=0.361  Sum_probs=121.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|.+|||||||++++..+.+.. ..++.+.....  ..  ...+.+.+||+||++.+..++..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            357999999999999999999998766643 45555554432  22  24578999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++....|+..+.... ..+.|++|++||.|+.+..  ...+.....     ....+.++++||++|.|+.
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999888887765432 3678999999999986532  222221111     1123357789999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      ++|+||.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.8e-28  Score=172.03  Aligned_cols=157  Identities=32%  Similarity=0.622  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+...+.++.. +.........+..+.+++||+||++.+......++..+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999887555555544 334445566788899999999999998888888889999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc-----------cCCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR-----------KVKNEEGELYAQENGL-SFLETSAKSA  157 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~  157 (199)
                      |++++.++.... .|+..+... ..+.|+++|+||+|+....           .+...++..+...++. +|+++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999987764 577777665 3589999999999987544           2346677778888887 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 029103          158 HNVNELFYEIAK  169 (199)
Q Consensus       158 ~~v~~~~~~l~~  169 (199)
                      +|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=4e-28  Score=177.43  Aligned_cols=167  Identities=32%  Similarity=0.543  Sum_probs=144.6

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .+....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            44456899999999999999999988888888888888888888888878888999999999999999988899999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++++|||+++..++..+..|+..+... ..+.|+++++||.|+.+.. .. .+...+....++.++++|+++|.|+++.|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQ-VK-ARQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCcccc-CC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999988765 3578999999999986432 22 23345677788999999999999999999


Q ss_pred             HHHHHHHHhh
Q 029103          165 YEIAKRLAEV  174 (199)
Q Consensus       165 ~~l~~~~~~~  174 (199)
                      .+|++.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999998764

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=7.3e-29  Score=174.88  Aligned_cols=157  Identities=24%  Similarity=0.354  Sum_probs=124.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|.+|||||||++++.+..+.. +.++.+....  .  .....+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            58999999999999999999876543 4555544442  2  23346789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG------LSFLETSAKSAHNVNELF  164 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~  164 (199)
                      ++++.+++....|+..+... ...+.|+++++||+|+.+.  .+..+...+....+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999998888887653 2356899999999998642  44555555443222      367899999999999999


Q ss_pred             HHHHHHHHhhC
Q 029103          165 YEIAKRLAEVN  175 (199)
Q Consensus       165 ~~l~~~~~~~~  175 (199)
                      +||.+.+....
T Consensus       154 ~~l~~~~~~~~  164 (169)
T cd04158         154 DWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHhhcc
Confidence            99998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-29  Score=180.16  Aligned_cols=161  Identities=19%  Similarity=0.336  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..++||+++|++|||||||++++..+.+.. ..++.+..+.  .  +....+.+.+||+||++.+...+..++..+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998776654 4455554443  2  2234578999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHH-HHH----HHHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEG-ELY----AQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++++++....++..+... ...+.|+++++||.|+.+..  ...+. ..+    .....+.++++||++|+|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999998888777665432 23578999999999986532  22222 111    11122356799999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++|++|.+.+.+.+
T Consensus       168 e~~~~l~~~i~~~~  181 (182)
T PTZ00133        168 EGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.2e-29  Score=177.07  Aligned_cols=152  Identities=20%  Similarity=0.352  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||++++..+.+.. +.++.+....  ...  ...+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999998777653 5555554432  222  24578999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHH-HHHHH----HHhCCcEEEeccCCCCCHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |++++.+++....|+..+... ...+.|+++++||+|+.+..  ...+ ...+.    ...++.++++||++|+|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999888877766443 23568999999999986432  2222 22221    1123457899999999999999


Q ss_pred             HHHHH
Q 029103          165 YEIAK  169 (199)
Q Consensus       165 ~~l~~  169 (199)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=175.68  Aligned_cols=164  Identities=36%  Similarity=0.604  Sum_probs=152.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+++|.+|||||+|..++..+.|.+.+.++++ +.+.+...+++....+.++||+|++++..+...++..++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            368999999999999999999999999999999887 6677777888999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      ||++++..||+.+..++..+.... ...+|+++|+||+|+...+.++.+++..++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999985543 4668999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+-.
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998877

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=3.1e-28  Score=175.21  Aligned_cols=160  Identities=19%  Similarity=0.389  Sum_probs=132.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-----CeEEEEEEEeCCCcccccccccccccCCCE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-----EVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +||+++|.+|||||||++++..+.+.+.+.++.+.+.......+.     +..+.+.+||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999998888788888877766666653     467899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCcccccCCHH----HHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQG-------------------NPNLIMFLVANKVDLEEKRKVKNE----EGELYA  142 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  142 (199)
                      +|+|||++++.+++.+..|+..+....                   ..+.|+++|+||.|+.+.+.....    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987631                   357899999999999765544443    345678


Q ss_pred             HHhCCcEEEeccCCCCC----------HHHHHHHHHHH
Q 029103          143 QENGLSFLETSAKSAHN----------VNELFYEIAKR  170 (199)
Q Consensus       143 ~~~~~~~~~~s~~~~~~----------v~~~~~~l~~~  170 (199)
                      .+.+++.+..++.++..          +...|+.+++.
T Consensus       161 ~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
T cd04102         161 EQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK  198 (202)
T ss_pred             HhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence            88999999999887642          55666655543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=9.8e-29  Score=174.87  Aligned_cols=156  Identities=21%  Similarity=0.308  Sum_probs=121.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+++|++|||||||+++|.+..+ ....++.+...  ..+..+  .+.+.+||+||++.+...+..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            34679999999999999999999997643 33445544332  333333  47889999999998888889999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNV  160 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v  160 (199)
                      ++|||++++.++.....|+..+... ...+.|+++++||+|+.+..  ...+......     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999998888888776543 24689999999999986533  3333333332     34568999999999999


Q ss_pred             HHHHHHHHH
Q 029103          161 NELFYEIAK  169 (199)
Q Consensus       161 ~~~~~~l~~  169 (199)
                      +++|++|..
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=5.4e-28  Score=169.96  Aligned_cols=160  Identities=28%  Similarity=0.397  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||+++|.++.+.....++.  ........+.+..+.+.+||+||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988765433221  122333445667789999999999888777777889999999999


Q ss_pred             ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHHh-C-CcEEEeccCCCCCHHHHHH
Q 029103           91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQEN-G-LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.+++.+. .|+..+.... .+.|+++++||+|+.+.....  ......+.... + .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 6888777654 589999999999997644321  22222333333 2 3799999999999999999


Q ss_pred             HHHHHHHh
Q 029103          166 EIAKRLAE  173 (199)
Q Consensus       166 ~l~~~~~~  173 (199)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-30  Score=176.70  Aligned_cols=169  Identities=31%  Similarity=0.524  Sum_probs=160.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+|++|+|..++||||++.+++.+.|...+..+++++.....+.+....+...+||++|+++|+.+...|++++.+-+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            35789999999999999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +||+-+|..||+.+..|++.+... ...+|.++|-||+|+.+..++...+++.+++..++.++.+|++...++..+|..|
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL  176 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL  176 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence            999999999999999999999876 5789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 029103          168 AKRLAEVNPS  177 (199)
Q Consensus       168 ~~~~~~~~~~  177 (199)
                      ++.+.++.++
T Consensus       177 aeK~~q~~kq  186 (246)
T KOG4252|consen  177 AEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHH
Confidence            9999887655

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=170.67  Aligned_cols=167  Identities=29%  Similarity=0.527  Sum_probs=148.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ...+|+.|+|..++|||+|+..+..+.|+..+.++.. +-+...+.+ ++..+.+.+|||+|+++|+.+++..++.+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3578999999999999999999999999999999887 444555667 59999999999999999999998899999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-CcEEEe
Q 029103           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  152 (199)
                      ++||++.++.+++.+ .+|+.++..+ .++.|+++|++|.|+.+            ...+...++..++++.| ..|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHH-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhh-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999998 4899999888 58999999999999963            23567788899999998 679999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          153 SAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      ||++..|++++|+..+.......+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999887553

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.3e-28  Score=170.20  Aligned_cols=152  Identities=16%  Similarity=0.260  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +|+++|++|||||||+++|.+... ...+.++.+.....    +....+.+.+||+||++.+..++..++..+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998653 34455555543322    2234678999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |++++.++.....|+..+.+..   ..+.|+++++||+|+.+...  ..+.....     ....+.++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887765532   35799999999999865321  22221111     11234589999999999999


Q ss_pred             HHHHHHH
Q 029103          163 LFYEIAK  169 (199)
Q Consensus       163 ~~~~l~~  169 (199)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=6.8e-28  Score=169.57  Aligned_cols=153  Identities=22%  Similarity=0.190  Sum_probs=118.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      +|+++|++|||||||++++.+. +...+.++.+...  ..+..  ..+.+++||+||++.+..++..++.++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999866 5555566665542  23333  45788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHH----HHHHHHHh--CCcEEEeccCCC------C
Q 029103           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE----GELYAQEN--GLSFLETSAKSA------H  158 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~s~~~~------~  158 (199)
                      .+++.+++.+..|+..+.... ..+.|+++++||.|+.+.....+..    ...++.+.  .+.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999988887543 3678999999999997644221111    12222222  356788999998      8


Q ss_pred             CHHHHHHHHHH
Q 029103          159 NVNELFYEIAK  169 (199)
Q Consensus       159 ~v~~~~~~l~~  169 (199)
                      |+.+.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=8.5e-28  Score=167.87  Aligned_cols=152  Identities=23%  Similarity=0.387  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      +|+++|++|||||||++++.++.+.. ..++.+...  ..... ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999877654 344444333  22322 345789999999999988888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHH------HHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE------LYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .+++.++.....|+..+.... ..+.|+++++||+|+.+...  ..+..      .+....+++++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999998888888877765432 36899999999999864321  22221      1122234578999999999999999


Q ss_pred             HHHHH
Q 029103          165 YEIAK  169 (199)
Q Consensus       165 ~~l~~  169 (199)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.8e-27  Score=168.48  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=118.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|++|+|||||++++..+.+.. ..++.+..+.  ....  ....+.+||+||++.+...+..++..+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999998877654 3455544432  2222  35789999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHH-HHHHH----HHhCCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+|.++++++.....++..+.+. ...+.|+++++||+|+.+..  ...+ ...+.    ...+++++++||++|+|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999998888877766666443 23678999999999986522  2222 22221    23456789999999999999


Q ss_pred             HHHHHHH
Q 029103          163 LFYEIAK  169 (199)
Q Consensus       163 ~~~~l~~  169 (199)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=3.8e-27  Score=166.81  Aligned_cols=158  Identities=27%  Similarity=0.438  Sum_probs=122.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+++|+.|||||||+++|..+.... ..++.+..  ...+.+.  ++.+.+||++|+..+...|+.++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeC--cEEEEEEeccccccccccceeecccccee
Confidence            3679999999999999999999998654333 34444433  3334443  46788999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhCCcEEEeccCCCCC
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAHN  159 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~  159 (199)
                      |||+|.++.+.+.+....+..+.... ..+.|++|++||.|+.+..  ...+......      ...+.++.+|+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            99999999988888887777765543 4689999999999987633  3333333222      2345589999999999


Q ss_pred             HHHHHHHHHHHH
Q 029103          160 VNELFYEIAKRL  171 (199)
Q Consensus       160 v~~~~~~l~~~~  171 (199)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=5.1e-27  Score=156.86  Aligned_cols=163  Identities=21%  Similarity=0.280  Sum_probs=130.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      +..+++|+++|..||||||++++|.+.. .+...++.+......    ....+++++||.+|+....+.|++||..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4569999999999999999999998543 444555555444333    33467899999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCH----HHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      |+|+|.+|+..+++....+..+.. ..-.+.|++|++||.|++.......    .....+++.++++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999999888877766544 3247789999999999974222211    22355557788999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      +.++||...++++
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999884

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=3.1e-27  Score=164.75  Aligned_cols=151  Identities=23%  Similarity=0.325  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|.+|||||||++++.+..+ ....++.+.....  ...  ....+.+||+||++.+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998763 3344445444332  222  25689999999999999899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++++++.....|+..+.... ..+.|+++++||+|+....  ...+.....     ....++++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887765533 4689999999999987543  222222222     22346799999999999999999


Q ss_pred             HHHH
Q 029103          166 EIAK  169 (199)
Q Consensus       166 ~l~~  169 (199)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=8.3e-27  Score=167.36  Aligned_cols=157  Identities=22%  Similarity=0.323  Sum_probs=120.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ....+|+++|++|||||||++++.++.+. .+.++.+..  ...+.++  ...+.+||+||++.+...+..+++.+|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            35789999999999999999999987653 244444332  2233333  467889999999988888889999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH----------------hCCcEE
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----------------NGLSFL  150 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  150 (199)
                      +|+|+++..+++....|+..+.+.. ..+.|+++++||+|+..  .............                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999988888888887776543 36799999999999864  2334444444332                224689


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029103          151 ETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++||++|+|+.++|+||.+++
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=4.7e-27  Score=165.23  Aligned_cols=152  Identities=24%  Similarity=0.308  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +|+++|++|+|||||+++|.+....      ....++.+...  ..+..+  ...+.+||+||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999864321      12233333333  223333  5788999999999999889999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH-------hCCcEEEeccCCC
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NGLSFLETSAKSA  157 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  157 (199)
                      +++|+|.+++++++....|+..+.+.. ..+.|+++++||+|+.+..  ...+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888888887766543 4689999999999986532  22333333221       3467999999999


Q ss_pred             CCHHHHHHHHHH
Q 029103          158 HNVNELFYEIAK  169 (199)
Q Consensus       158 ~~v~~~~~~l~~  169 (199)
                      +|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=3.7e-27  Score=164.41  Aligned_cols=151  Identities=24%  Similarity=0.359  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|++++|||||++++..+.+.. ..++.+.+..  .  ++.....+++||+||++.+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998766543 3344443332  2  22345789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHH-HHHH----HHhCCcEEEeccCCCCCHHHHHH
Q 029103           92 ITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYA----QENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++++.++.....++..+.+ ....+.|+++++||+|+.+..  ...+. ..+.    ...+.+++++|++++.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998887766655554433 334679999999999986532  12222 1111    11234699999999999999999


Q ss_pred             HHHH
Q 029103          166 EIAK  169 (199)
Q Consensus       166 ~l~~  169 (199)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=9e-26  Score=159.60  Aligned_cols=143  Identities=46%  Similarity=0.729  Sum_probs=128.6

Q ss_pred             CCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Q 029103           33 GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG  112 (199)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  112 (199)
                      +.|.+.+.++++.++....+.+++..+++.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34666778899989988888888999999999999999999999999999999999999999999999999999987765


Q ss_pred             CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          113 NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       113 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ....|+++|+||+|+.+...+...++..++..+++.|+++||++|.|+.++|++|.+.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            577899999999999876677788888888888999999999999999999999999997643

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=172.20  Aligned_cols=141  Identities=26%  Similarity=0.470  Sum_probs=120.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-------------CeEEEEEEEeCCCccccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-------------EVTIKFDIWDTAGQERYH   73 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~l~d~~g~~~~~   73 (199)
                      +...+||+|+|..|||||||++++.++.+...+.++++.++....+.++             +..+.++|||++|++.|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            3468999999999999999999999998888788888888776666554             246889999999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCcccc---c---CCH
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN------------PNLIMFLVANKVDLEEKR---K---VKN  135 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~  135 (199)
                      .++..+++++|++|+|||+++..+++.+..|+..+.....            .++|++||+||+|+.+.+   .   +..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999987531            258999999999996542   2   357


Q ss_pred             HHHHHHHHHhCC
Q 029103          136 EEGELYAQENGL  147 (199)
Q Consensus       136 ~~~~~~~~~~~~  147 (199)
                      .+++.++..+++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            889999998874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.8e-26  Score=164.81  Aligned_cols=156  Identities=19%  Similarity=0.255  Sum_probs=117.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +..++|+++|.+|||||||++++.++.+.. +.++.+...  .....  ..+++.+||+||+..+...+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            457999999999999999999999876542 233333222  22223  3477899999999999889999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH------------HhCCcEEEecc
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------------ENGLSFLETSA  154 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~  154 (199)
                      +|+|+++++++.....++..+.+. ...+.|+++++||.|+...  .+..+......            .....++++|+
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999998888777766543 2367899999999998642  23333222211            02345899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAKR  170 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~  170 (199)
                      +++.|++++++||...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=6e-26  Score=157.80  Aligned_cols=151  Identities=26%  Similarity=0.367  Sum_probs=117.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (199)
                      |+++|++|||||||+++|.+..+.....++.+.....  ...  ..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999988777666666655442  222  237899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHHH
Q 029103           93 TSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        93 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++.+++.....|+..+.... ..+.|+++++||.|+.+....  .......     ...+++++++|++++.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99988888877777665432 367899999999998654321  1111111     123467899999999999999999


Q ss_pred             HHH
Q 029103          167 IAK  169 (199)
Q Consensus       167 l~~  169 (199)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=2e-25  Score=157.81  Aligned_cols=156  Identities=21%  Similarity=0.285  Sum_probs=116.1

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      ..+....++|+++|++|||||||++++.+..+.. ..++.+....  .+...  ...+.+||++|+..+...+..++..+
T Consensus         8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04155           8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENT   82 (173)
T ss_pred             hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCC
Confidence            3444568999999999999999999999765432 3444443332  22233  46788999999988888888889999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--------cEEEecc
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--------SFLETSA  154 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~  154 (199)
                      |++++|+|+++..++.....++..+... ...++|+++++||.|+.+...  .   ..+....++        +++++||
T Consensus        83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~---~~i~~~l~~~~~~~~~~~~~~~Sa  157 (173)
T cd04155          83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--A---EEIAEALNLHDLRDRTWHIQACSA  157 (173)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--H---HHHHHHcCCcccCCCeEEEEEeEC
Confidence            9999999999988888777666665443 235799999999999865332  1   122222232        4789999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAK  169 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~  169 (199)
                      ++|+|++++|+||.+
T Consensus       158 ~~~~gi~~~~~~l~~  172 (173)
T cd04155         158 KTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=2e-25  Score=157.04  Aligned_cols=156  Identities=19%  Similarity=0.152  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---------ccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPMYYR   81 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---------~~~~~~~   81 (199)
                      .+|+++|.+|||||||+++|.+..+.....+..  +..............+.+|||||+.....         .......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFT--TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCc--ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999876532211111  11122222333457899999999742110         0011112


Q ss_pred             CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           82 GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ..|++++|+|+++..+  ++....|+..+... ..+.|+++++||+|+.+......  ...+....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            3689999999997654  35556777777654 24789999999999865443322  4455555678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029103          160 VNELFYEIAKRL  171 (199)
Q Consensus       160 v~~~~~~l~~~~  171 (199)
                      ++++|++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.7e-25  Score=158.98  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=112.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC--C-----CCCCcC------ccceeEEEEEEEe-----CCeEEEEEEEeCCCccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ--F-----FDFQES------TIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~--~-----~~~~~~------~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~~~   73 (199)
                      +|+++|++++|||||+++|.+..  +     ...+.+      ..+.+........     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998732  1     111111      1123333322222     5667889999999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---EE
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS---FL  150 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~  150 (199)
                      ..+..++..+|++|+|+|+++..+.+....|....    ..+.|+++++||+|+.+..  .......++...+++   ++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            88889999999999999999876555555554322    2467899999999986422  122334556666653   89


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029103          151 ETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++||++|+|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.4e-25  Score=158.08  Aligned_cols=158  Identities=20%  Similarity=0.171  Sum_probs=109.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccc---ccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~---~~~~d   84 (199)
                      +|+++|.+|||||||+++|.+........+..............+ ...+.+|||||..+    +..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999986543211111111111111122222 24789999999642    22233333   34699


Q ss_pred             EEEEEEECCCH-HHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCH
Q 029103           85 AAVVVYDITSM-DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV  160 (199)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v  160 (199)
                      ++++|+|++++ .+++.+..|.+.+.....  .+.|+++|+||+|+.+.... ......+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888876542  47899999999998664443 2333344444 3778999999999999


Q ss_pred             HHHHHHHHHHH
Q 029103          161 NELFYEIAKRL  171 (199)
Q Consensus       161 ~~~~~~l~~~~  171 (199)
                      +++|++|.+++
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=8.4e-25  Score=151.70  Aligned_cols=158  Identities=29%  Similarity=0.521  Sum_probs=126.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|+|||||++++.+..+...+.++.+.+.........+..+.+.+||+||+..+...+..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999886666666777777666666777668899999999999988888888999999999


Q ss_pred             EECCCH-HHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           90 YDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|+... .++.... .|+..+......+.|+++++||.|+.... ........+......+++++|++++.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999866 5555544 66666665544488999999999987643 33444455555556789999999999999999986


Q ss_pred             H
Q 029103          168 A  168 (199)
Q Consensus       168 ~  168 (199)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=9.9e-26  Score=154.39  Aligned_cols=163  Identities=22%  Similarity=0.330  Sum_probs=130.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ...+++|+++|.-++||||++..|..+.+... .|+++.........    ++.+++||.+|+++++.+|+.|+.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            45799999999999999999999987776554 66666555444443    78899999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccc---CCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRK---VKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |||+|.+|++.+...+..+..+.... ....|+++.+||.|++....   ++......-.....+.+..++|.+|+|+.+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            99999999999999887666666554 47899999999999976443   222222222223456789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029103          163 LFYEIAKRLAEV  174 (199)
Q Consensus       163 ~~~~l~~~~~~~  174 (199)
                      .++||.+.+..+
T Consensus       169 gl~wl~~~~~~~  180 (181)
T KOG0070|consen  169 GLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=6.7e-25  Score=168.79  Aligned_cols=162  Identities=20%  Similarity=0.162  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccc---ccccCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAP---MYYRGA   83 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~---~~~~~~   83 (199)
                      ..|+|+|.|+||||||+++|++....-...+..+.......+.+. ....+.+||+||..+..    .+..   ..+..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999755332122222222222223222 33568899999974321    2222   245678


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +++++|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+.+...........+....+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999987788888899888877643  478999999999987654433334444555667899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      +++++|.+.+.+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=3.5e-25  Score=160.66  Aligned_cols=157  Identities=22%  Similarity=0.185  Sum_probs=112.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~   78 (199)
                      ...++|+|+|++|||||||++++.+...........+.+.........+. ..+.+||+||....         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            34689999999999999999999987543222222222333333333332 37889999997321         1111 2


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      .+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+.....     ......+.+++++|++++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998888777777777766655678999999999986543221     3344566789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKRL  171 (199)
Q Consensus       159 ~v~~~~~~l~~~~  171 (199)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=2.1e-24  Score=151.11  Aligned_cols=152  Identities=16%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +.|+++|.+|||||||+++|.+..   +.....+..+.+.......... ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998632   2222223333333333333332 457899999999988776667788999999


Q ss_pred             EEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHH---hCCcEEEeccCCCCC
Q 029103           88 VVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQE---NGLSFLETSAKSAHN  159 (199)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~  159 (199)
                      +|+|+++   +++.+.+    ..+...  ...|+++++||+|+.+....  ...+.......   .+.+++++|+++++|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   3333322    222222  22489999999998653211  11222333333   467899999999999


Q ss_pred             HHHHHHHHHH
Q 029103          160 VNELFYEIAK  169 (199)
Q Consensus       160 v~~~~~~l~~  169 (199)
                      ++++|+.|..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=8.7e-24  Score=145.36  Aligned_cols=153  Identities=46%  Similarity=0.787  Sum_probs=122.0

Q ss_pred             EEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC
Q 029103           15 LLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        15 v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (199)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||+..+...+..++..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998766 34344444 6666777777777889999999999888887788899999999999999


Q ss_pred             CHHHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCcccccCCHHH-HHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           94 SMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        94 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ++.+......|. .........+.|+++++||.|+.......... ........+.+++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888887762 33334446789999999999987654433322 4455566778999999999999999999885

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2e-23  Score=152.98  Aligned_cols=166  Identities=40%  Similarity=0.563  Sum_probs=136.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|+.|||||||+++|.+..+...+.++.+..+...........+++.+|||+|++++..++..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999998888888887777777777766688999999999999999999999999999999


Q ss_pred             EECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHh---CCcEEEec
Q 029103           90 YDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQEN---GLSFLETS  153 (199)
Q Consensus        90 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s  153 (199)
                      +|.++..+ .+....|+..+........|+++++||+|+....            ..............   ...++.+|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99998544 4555789989888766689999999999997653            22222222222222   34489999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHhhC
Q 029103          154 AK--SAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       154 ~~--~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ++  .+.++.++|..+...+.+..
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhh
Confidence            99  99999999999999997543

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.1e-23  Score=148.01  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      .|+|+|.+|+|||||+++|.++.+.................... .....+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999877655433333322222222222 13578899999999988888888889999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH-HHHHHHHH------HhCCcEEEeccCCCCCHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-EEGELYAQ------ENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~v~~~  163 (199)
                      |+++....+ ....+..+..   .+.|+++++||+|+.+...... .....+..      ..+++++++|+++++|+.++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743211 1222223332   4678999999999864321111 11111111      12367999999999999999


Q ss_pred             HHHHHHHHH
Q 029103          164 FYEIAKRLA  172 (199)
Q Consensus       164 ~~~l~~~~~  172 (199)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=2.3e-24  Score=147.72  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-----cccccccccccCCCEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAA   86 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-----~~~~~~~~~~~~~d~~   86 (199)
                      ||+++|++|||||||+++|.+..+.  +.++.+.+       +     .-.+||+||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~-----~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------Y-----NDGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------E-----cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999876542  22222111       1     11589999972     2333333 47899999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY  165 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++.++.. ..|...+      ..|+++++||+|+.+. .........+....+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887644 2343322      2389999999998652 3345556666777776 799999999999999999


Q ss_pred             HHH
Q 029103          166 EIA  168 (199)
Q Consensus       166 ~l~  168 (199)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=2.6e-23  Score=144.68  Aligned_cols=148  Identities=21%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc------cccccc--CCCEE
Q 029103           15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYYR--GAAAA   86 (199)
Q Consensus        15 v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~------~~~~~~--~~d~~   86 (199)
                      |+|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||+..+...      +..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998754433334344444444444443  57899999998776542      445554  89999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|+|+++++..   ..+...+..   .+.|+++++||+|+.+...... ....+...++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999876432   233334433   3688999999999976544433 245667777899999999999999999999


Q ss_pred             HHHHH
Q 029103          167 IAKRL  171 (199)
Q Consensus       167 l~~~~  171 (199)
                      |.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=6.8e-24  Score=152.73  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh--CCCCCCC------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA   76 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~   76 (199)
                      .+|+++|.+++|||||+++|..  +.+....            ....+.+.......+......+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322            1223444444555556667889999999999999999


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHH-------HhCCc
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQ-------ENGLS  148 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  148 (199)
                      ..++..+|++++|+|+++.. ......++..+..   .+.|+++++||+|+.+.... ...+...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2233334443332   36789999999998643221 1223333332       23678


Q ss_pred             EEEeccCCCCCHHHH------HHHHHHHHHhh
Q 029103          149 FLETSAKSAHNVNEL------FYEIAKRLAEV  174 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~------~~~l~~~~~~~  174 (199)
                      ++++|+++|.|+.++      +++|.+.+.+.
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            999999999876433      44555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=2.4e-24  Score=155.89  Aligned_cols=155  Identities=25%  Similarity=0.245  Sum_probs=103.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc-----------ccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----------ERYHSLA   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-----------~~~~~~~   76 (199)
                      ...++|+++|.+|||||||+++|.+..+.....+  +.+.........    .+.+|||||.           +.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4578999999999999999999998765433333  334333333222    5889999993           4454444


Q ss_pred             ccccc----CCCEEEEEEECCCHHHH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH
Q 029103           77 PMYYR----GAAAAVVVYDITSMDSF-E---------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA  142 (199)
Q Consensus        77 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  142 (199)
                      ..++.    .++++++|+|.++.... +         ....++..+.   ..+.|+++|+||+|+.+..   ......+.
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            44443    45788888887643211 0         0112222222   2478999999999986533   33445555


Q ss_pred             HHhCC---------cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          143 QENGL---------SFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       143 ~~~~~---------~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ...++         +++++||++| |++++|++|.+.+.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            55554         4799999999 99999999999876544

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3.4e-23  Score=159.25  Aligned_cols=159  Identities=19%  Similarity=0.196  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccccc---ccCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMY---YRGA   83 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~---~~~~   83 (199)
                      ..|+|+|.|+||||||+++|++........+..+.......+.+.+ ...+.+||+||..+..    .+...+   +..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999997653221112222222222333332 3678999999974322    233333   4569


Q ss_pred             CEEEEEEECCCH---HHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      +++++|+|+++.   ++++.+..|.+++..+.  ..+.|+++|+||+|+.+... .......+....+.+++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   67788888888776653  25789999999999876433 2334455666667899999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKRL  171 (199)
Q Consensus       159 ~v~~~~~~l~~~~  171 (199)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=1.6e-23  Score=162.33  Aligned_cols=153  Identities=22%  Similarity=0.227  Sum_probs=109.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc---------cccccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMYY   80 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~---------~~~~~~~~~~   80 (199)
                      .++|+++|.+|||||||+|+|.+...........+.+.....+.+.+ ...+.+|||+|..         .|...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            48999999999999999999998654322222333444445555533 3478899999972         122211 247


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+....     ... .....+++.+||++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCH
Confidence            88999999999999888777766666666654567899999999998643211     111 122346899999999999


Q ss_pred             HHHHHHHHHH
Q 029103          161 NELFYEIAKR  170 (199)
Q Consensus       161 ~~~~~~l~~~  170 (199)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.9e-23  Score=143.10  Aligned_cols=148  Identities=20%  Similarity=0.275  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------ccccc--ccC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMY--YRG   82 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~--~~~   82 (199)
                      ++|+++|.|++|||||+|+|++.+..-...+..+++.....+...+  ..+.++|+||.-....      ....+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999875444445555555555555555  6788999999643322      22333  368


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      .|++++|+|+++.+   .-.++..++.+.   ++|+++++||+|....... ......+.+..+++++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGI-EIDAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999997643   323444555544   6889999999998765443 3346778888999999999999999999


Q ss_pred             HHHHH
Q 029103          163 LFYEI  167 (199)
Q Consensus       163 ~~~~l  167 (199)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=1.7e-23  Score=157.69  Aligned_cols=158  Identities=18%  Similarity=0.073  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGA   83 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~~~   83 (199)
                      +|+++|.||||||||+|+|.+..... ..+..+++.............++.+|||||......        ....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999999876432 112122222211122222335789999999754321        123457899


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE  162 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  162 (199)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999998765543  334444433   46889999999998643221 2233344444443 799999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 029103          163 LFYEIAKRLAEVNP  176 (199)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (199)
                      ++++|.+.+.+..+
T Consensus       155 L~~~l~~~l~~~~~  168 (270)
T TIGR00436       155 LAAFIEVHLPEGPF  168 (270)
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999998866544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=4.7e-23  Score=137.02  Aligned_cols=114  Identities=32%  Similarity=0.612  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ||+|+|++|||||||+++|.+..+.  .......+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988766  23344455566666777777777799999999998888888889999999999


Q ss_pred             EECCCHHHHHHHHH---HHHHHHHhCCCCceEEEEEeCCC
Q 029103           90 YDITSMDSFERAKK---WVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        90 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      ||++++.+++.+..   |+..+... ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence            99999999988754   45555554 45699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=3e-23  Score=146.89  Aligned_cols=155  Identities=21%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc----cccc---cccccCCCEEE
Q 029103           15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLA---PMYYRGAAAAV   87 (199)
Q Consensus        15 v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~----~~~~---~~~~~~~d~~i   87 (199)
                      ++|++|||||||+++|.+........+..+........... ....+.+||+||....    ..++   ...+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999875421111111122222222222 1467889999997422    2222   23467899999


Q ss_pred             EEEECCCH------HHHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103           88 VVYDITSM------DSFERAKKWVQELQRQGN-------PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus        88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                      +|+|++++      .+++....|...+.....       .+.|+++++||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777777665432       47899999999999765443333233444456678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAKR  170 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~  170 (199)
                      +++.|+++++++|.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=8e-23  Score=141.91  Aligned_cols=146  Identities=19%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYR   81 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~~   81 (199)
                      ++|+++|++|+|||||++++.+..... ...+.............  ....+.+||+||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999765321 11222222222333333  3457889999997655432        234577


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+.+....       .....+.+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998766655433322      457899999999998764433       334556789999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=1.9e-22  Score=156.15  Aligned_cols=159  Identities=19%  Similarity=0.267  Sum_probs=107.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeE--EEEEEEeCCeEEEEEEEeCCCccc-ccccc-------c
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQER-YHSLA-------P   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~-------~   77 (199)
                      ++.++|+++|.+|||||||+|+|.+..+.. ..+...+++  .......+  +.++.+|||||... +..+.       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            456799999999999999999999876542 222222222  22333333  45789999999843 22221       1


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEecc
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSA  154 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~  154 (199)
                      ..+..+|++++|+|..+.  +... ..|+..+...   +.|.++|+||+|+.+.   ............+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            236789999999997653  3333 3455555433   4566889999998643   1333444444433  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCC
Q 029103          155 KSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      ++|.|++++|++|.+.+.+..+-
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~~~  221 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISPWL  221 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999988776544

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=2.5e-22  Score=133.42  Aligned_cols=170  Identities=24%  Similarity=0.455  Sum_probs=147.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .+....+||.++|.+..|||||+-.+.++.+.+.+..+.++....+++.+.+..+.+.+||.+|++++....+..-..+-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            34467999999999999999999999998888888889999999999999999999999999999999998888888888


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc----c-CCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR----K-VKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~-~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +++++||++++.++..+.+||.+.+..-...+| +++++|.|+.-..    + .-...+..+++..+.+.+++|+..+.+
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            999999999999999999999998887667777 7789999973211    1 113446788889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      +.++|..+...+-...
T Consensus       174 v~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNLP  189 (205)
T ss_pred             HHHHHHHHHHHHhCCc
Confidence            9999998877776544

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=2.7e-21  Score=128.20  Aligned_cols=168  Identities=24%  Similarity=0.353  Sum_probs=139.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cccccccccCCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAA   84 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~~~~~~~~~~d   84 (199)
                      ....||+++|..++|||++++.|.-+...  ....+++...|......-.+..-.+.++||.|...+ .++-..|+.-+|
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            45789999999999999999998876543  334566655555555555566677999999998777 677788999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++||+..|++||+.+..+-..+.... ...+|++|++||.|+.+..++....+..+++...+..+++++.+..++-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            9999999999999988766666665544 478999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |..+...+...+
T Consensus       167 f~~l~~rl~~pq  178 (198)
T KOG3883|consen  167 FTYLASRLHQPQ  178 (198)
T ss_pred             HHHHHHhccCCc
Confidence            999988876643

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=3.4e-22  Score=159.14  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~   79 (199)
                      ..++|+++|++|||||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999975421 11223333444444444544  56789999998654432        2356


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|||++++.+.+..  |+..+..   .+.|+++|+||+|+...      ....+...++.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988776654  6555532   46789999999998643      12344566778899999997 69


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      ++++|+.|.+.+.+..
T Consensus       348 I~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       348 IKALVDLLTQKINAFY  363 (442)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=3.5e-22  Score=142.91  Aligned_cols=157  Identities=18%  Similarity=0.159  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc--------------cceeEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST--------------IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP   77 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~   77 (199)
                      +|+++|.+|+|||||+++|.+..........              .+.+..............+.+||+||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999986554322111              11222222222333356899999999988888888


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHH-----------
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE-----------  144 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-----------  144 (199)
                      .++..+|++++|+|.+++..... ..++..+..   .+.|+++++||+|+.......  ..........           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            88999999999999987643322 233333332   578899999999987532221  1112222222           


Q ss_pred             ---hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          145 ---NGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       145 ---~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                         ...+++++|+++|.|+++++++|.+.+.
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence               3577999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.3e-21  Score=154.27  Aligned_cols=159  Identities=23%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc----ccccccc---ccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLAPMY---YRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~----~~~~~~~---~~~~d   84 (199)
                      .|+++|.|+||||||+++|++....-...+..+.......+... ....+.+||+||..+.    ..+...|   +..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            79999999999999999999765321111222222222222222 1457899999997432    1233333   45689


Q ss_pred             EEEEEEECCCH---HHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           85 AAVVVYDITSM---DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ++++|+|+++.   +.++....|..++..+..  .+.|++||+||+|+.+.    ......+....+.+++++||++++|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   567777778777776542  57899999999998432    2334556666668899999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      +++++++|.+.+.+..
T Consensus       315 I~eL~~~L~~~l~~~~  330 (424)
T PRK12297        315 LDELLYAVAELLEETP  330 (424)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999887654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=1.7e-22  Score=146.30  Aligned_cols=161  Identities=14%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeC-----------------------------C----
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLN-----------------------------E----   56 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------~----   56 (199)
                      ++|+++|+.|+|||||+++|.+.... .......+.........+.                             +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            57999999999999999999754111 0111111111111111100                             0    


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--  134 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--  134 (199)
                      ...++.|||+||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++++||+|+.+.....  
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267999999999988877777788999999999998742111112222323222  234689999999986532211  


Q ss_pred             HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ......+...   .+.+++++||++|+|++++|++|.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            1222222222   25789999999999999999999876644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9e-23  Score=133.22  Aligned_cols=159  Identities=24%  Similarity=0.397  Sum_probs=123.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..+++|+++|..++||||++-.|+.+.... ..++.++...    .+...++++.+||.+|++..+.+|+.||+...++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            358999999999999999999998665332 3444443332    23456788999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|..+.+.++..+..+-. +........|++|.+||.|+++...  ..+..++.     +..++.+.++++.+|+|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999998888888754444 4444468899999999999987543  33333322     2334668999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      |.|.||.+.+.+
T Consensus       168 eglswlsnn~~~  179 (180)
T KOG0071|consen  168 EGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHhhccC
Confidence            999999987643

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=1.7e-22  Score=140.33  Aligned_cols=147  Identities=18%  Similarity=0.130  Sum_probs=98.2

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccCCC
Q 029103           14 VLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGAA   84 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~~~d   84 (199)
                      +++|.+|||||||+++|.+..... ...+..+.+........  ....+.+|||||+..+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999764221 11222222222222222  346788999999876543        3345678899


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  163 (199)
                      ++++|+|..++.+.... .+...+..   .+.|+++++||+|+.+....     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999865433322 22233332   35889999999998754322     222333455 7899999999999999


Q ss_pred             HHHHHHHH
Q 029103          164 FYEIAKRL  171 (199)
Q Consensus       164 ~~~l~~~~  171 (199)
                      |++|.+++
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=7.2e-22  Score=162.35  Aligned_cols=158  Identities=18%  Similarity=0.226  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC-------CCCCCc------CccceeEEEEEEEe-----CCeEEEEEEEeCCCccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQE------STIGAAFFTQVLSL-----NEVTIKFDIWDTAGQER   71 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~   71 (199)
                      -.+|+++|+.++|||||+++|+...       +...+.      ...+.++......+     ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998642       111111      12244444333333     45568999999999999


Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS---  148 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---  148 (199)
                      |...+..++..+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+.+..  .......+....++.   
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99888999999999999999998765555555544332    367899999999986432  122334555555653   


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          149 FLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ++++||++|.|++++|++|.+.+..
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999999988754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=3.6e-22  Score=139.04  Aligned_cols=143  Identities=16%  Similarity=0.176  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----ccccccccCCCEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMYYRGAAAAV   87 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~~~~~d~~i   87 (199)
                      +|+++|.+|+|||||+++|.+.. .. ...+.       ...+...    .+||+||.....    ......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-cc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987543 11 11111       1122222    269999963211    11123368999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--cEEEeccCCCCCHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--SFLETSAKSAHNVNELFY  165 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~  165 (199)
                      +|+|+++.+++.  ..|+..+    ..+.|+++++||.|+.+.   .......+....+.  +++++|+++++|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999876542  2333332    246789999999998652   23445566666664  899999999999999999


Q ss_pred             HHHHHHHhhCC
Q 029103          166 EIAKRLAEVNP  176 (199)
Q Consensus       166 ~l~~~~~~~~~  176 (199)
                      +|.+.+.+...
T Consensus       141 ~l~~~~~~~~~  151 (158)
T PRK15467        141 YLASLTKQEEA  151 (158)
T ss_pred             HHHHhchhhhc
Confidence            99988866543

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=8.3e-22  Score=156.12  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--cccccc------cccC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAPM------YYRG   82 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--~~~~~~------~~~~   82 (199)
                      .+|+++|.+|||||||+|+|.+........+..+.+.....+...+. ..+.+|||+|..+.  ..++..      .+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999976543322333334444444444432 26789999997331  222222      3688


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVN  161 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  161 (199)
                      +|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+...   ....  ....+.+ ++.+||++|+|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999988777765555555544445789999999999864211   1111  1123445 5889999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      +++++|.+.+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999988653

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.89  E-value=1.9e-23  Score=137.44  Aligned_cols=156  Identities=23%  Similarity=0.378  Sum_probs=126.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .++.+.++|..++|||||++.+..+.+.+...++.+....    .+..+.+.+.+||.||+..+...|..|.+.+++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            4788999999999999999999888877777777765433    345667889999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--------CcEEEeccCCCCC
Q 029103           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAKSAHN  159 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~  159 (199)
                      |+|+.|++.+...+..+..+... ...++|++|++||.|++++..     ..++..+.|        +.-|.+|+++..+
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~-----~~~li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS-----KIALIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc-----HHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence            99999998887777555554443 358999999999999976432     123333344        3469999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029103          160 VNELFYEIAKRLAE  173 (199)
Q Consensus       160 v~~~~~~l~~~~~~  173 (199)
                      ++-..+||+++...
T Consensus       170 id~~~~Wli~hsk~  183 (186)
T KOG0075|consen  170 IDITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.7e-22  Score=160.48  Aligned_cols=149  Identities=21%  Similarity=0.215  Sum_probs=108.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~   79 (199)
                      ..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++  ..+.+|||||.+.+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999976532 22223333344444444443  56889999998754432        2236


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.+.....        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999998876665433332      3578999999999996533221        34467899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029103          160 VNELFYEIAKRLAE  173 (199)
Q Consensus       160 v~~~~~~l~~~~~~  173 (199)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=1.1e-21  Score=141.44  Aligned_cols=162  Identities=19%  Similarity=0.183  Sum_probs=105.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------cccc
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHS   74 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~   74 (199)
                      ......++|+++|.+|+|||||+++|.+..+.....+..+.+........   ...+.+||+||..          .+..
T Consensus        19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            34456789999999999999999999986544444445544443332222   3678999999953          2233


Q ss_pred             cccccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHHHHhCCcE
Q 029103           75 LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQENGLSF  149 (199)
Q Consensus        75 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~  149 (199)
                      ....++..   .+++++|+|.+++..... ..+...+..   .+.|+++++||+|+.+..+...  ..........+.++
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            33444444   367888898876533222 112222222   3678999999999865332211  12333333336789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHh
Q 029103          150 LETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +++|++++.|++++++.|...+.+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999887754

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=5.2e-22  Score=142.71  Aligned_cols=159  Identities=19%  Similarity=0.138  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC----CCCC---CCcCccceeEEEEEEEe------------CCeEEEEEEEeCCCccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG----QFFD---FQESTIGAAFFTQVLSL------------NEVTIKFDIWDTAGQER   71 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~----~~~~---~~~~~~~~~~~~~~~~~------------~~~~~~v~l~d~~g~~~   71 (199)
                      ++|+++|++++|||||+++|+..    .+..   ...+..+.+.......+            ......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    1111   11112222222222222            23367899999999876


Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHH-HHHH-----
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGE-LYAQ-----  143 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~-----  143 (199)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+.......  ..+.. .+..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5443334456789999999998743332222221  1122  256899999999986432211  11111 1111     


Q ss_pred             -HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          144 -ENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       144 -~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                       ..+++++++|+++|+|+++++++|.+++..
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             135789999999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=3.2e-22  Score=161.45  Aligned_cols=164  Identities=21%  Similarity=0.186  Sum_probs=111.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc-
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLA-   76 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~-   76 (199)
                      ..++|+++|.+|||||||+++|++.... ....+..+.+.....+..++.  .+.+|||||...          |..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987542 222333333333444445544  467999999632          22221 


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHH-HHHHHHhCCcEEEec
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG-ELYAQENGLSFLETS  153 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~s  153 (199)
                      ..+++.+|++++|+|++++.+...+ .++..+..   .+.|+++|+||+|+.+.....  ..+. ..+......+++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            2356899999999999988777665 34444433   478999999999996422110  0111 112222346899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCCC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVNPSR  178 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~~~~  178 (199)
                      |++|.|++++|+.+.+.+.....+.
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~~i  388 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDTRI  388 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999998887655443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.9e-21  Score=155.14  Aligned_cols=163  Identities=19%  Similarity=0.185  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cc---ccccccC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SL---APMYYRG   82 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~---~~~~~~~   82 (199)
                      -..|+|+|.|+||||||+++|++....-...+.  ++.......+......+.+||+||.....    .+   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            467999999999999999999976533212222  22222222233334678999999963211    11   1224577


Q ss_pred             CCEEEEEEECCCH----HHHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC
Q 029103           83 AAAAVVVYDITSM----DSFERAKKWVQELQRQG-----------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL  147 (199)
Q Consensus        83 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  147 (199)
                      +|++|+|+|+++.    +.++.+..+..++..+.           ..+.|++||+||+|+.+...... .........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCC
Confidence            9999999999753    34555555555554432           24689999999999975433222 22222334578


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          148 SFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +++++|+++++|+++++.+|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999987754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=5.8e-22  Score=159.96  Aligned_cols=155  Identities=24%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--------~~~~~~~~~~   81 (199)
                      ..+|+|+|.+|||||||+|+|.+..... .....+++...........+..+.+|||||.+.        +...+..++.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~-v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAV-VEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCccc-ccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            4689999999999999999999765421 223333333333332222334688999999763        2233455788


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      .+|++|+|+|+++..+... ..+...+..   .+.|+++|+||+|+....   ......+....+ .++++||++|.|++
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi~  188 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGVG  188 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCcH
Confidence            9999999999998654432 334444433   478999999999986422   112222222222 35799999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      ++|++|.+.+.+
T Consensus       189 eL~~~i~~~l~~  200 (472)
T PRK03003        189 DLLDAVLAALPE  200 (472)
T ss_pred             HHHHHHHhhccc
Confidence            999999998855

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=2e-21  Score=155.65  Aligned_cols=164  Identities=18%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc----------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA----------   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~----------   76 (199)
                      ...++|+++|.+|+|||||+++|++.... ....+....+.....+..++  ..+.+|||||...+....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999976432 11122222222222233333  468899999976544322          


Q ss_pred             -cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hCCcEEE
Q 029103           77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLE  151 (199)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~  151 (199)
                       ...+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+...........+...    ..+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence             2357899999999999987665553 34444433   3688999999999872111111111222222    2478999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      +||++|.|+.++|+++.+.+.....+
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~~~  349 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENANRR  349 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999887765443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.87  E-value=3.5e-21  Score=134.70  Aligned_cols=156  Identities=18%  Similarity=0.098  Sum_probs=103.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------ccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYR   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~   81 (199)
                      ..+|+++|++|+|||||++++.+........ ...................+.+||+||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999998764322111 111222222222334456788999999754322        2234578


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV  160 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v  160 (199)
                      .+|++++|+|.+++... ....+...+...   +.|+++++||+|+.............+.... ..+++.+|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            89999999999976211 112333333332   6789999999998743322233334444444 368999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          161 NELFYEIAKR  170 (199)
Q Consensus       161 ~~~~~~l~~~  170 (199)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999775

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=5e-21  Score=146.06  Aligned_cols=162  Identities=19%  Similarity=0.120  Sum_probs=107.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc--------ccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~--------~~~~~~~   80 (199)
                      ..-.|+++|+||||||||+|+|++...... .+...++.............++.+|||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~v-s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeec-CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            456799999999999999999998654321 2222222222222222234789999999975432        2233457


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN  159 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  159 (199)
                      ..+|++++|+|+++... .....++..+.   ..+.|+++|+||+|+.............+....+ .+++++|++++.|
T Consensus        83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            88999999999987321 11123333333   2368899999999997332222333444444433 6799999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      +++++++|.+.+.+..
T Consensus       159 v~~L~~~L~~~l~~~~  174 (292)
T PRK00089        159 VDELLDVIAKYLPEGP  174 (292)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999886644

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=6.5e-21  Score=149.45  Aligned_cols=163  Identities=20%  Similarity=0.187  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----cc---cccccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LA---PMYYRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----~~---~~~~~~~d   84 (199)
                      .|+|+|.|+||||||+|+|++.+..-...+..+.......+... ....+.++|+||..+...    +.   -..+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            79999999999999999999765422222222222223333332 234588999999753221    11   12478899


Q ss_pred             EEEEEEECC---CHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCC
Q 029103           85 AAVVVYDIT---SMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA  157 (199)
Q Consensus        85 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  157 (199)
                      ++++|+|++   +.+.++.+..|+.++..+..  .+.|+++|+||+|+.+.... ......+....+  .+++++||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999988   44567777777777766532  46899999999998654332 223344444444  47899999999


Q ss_pred             CCHHHHHHHHHHHHHhhCC
Q 029103          158 HNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~~~~  176 (199)
                      .|+++++++|.+.+.+..+
T Consensus       319 ~GIdeLl~~I~~~L~~~~~  337 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPR  337 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcc
Confidence            9999999999999977543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=7.1e-21  Score=155.90  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ...+|+++|++++|||||+++|.+..+.....+.++.......+...+. ..+.+|||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4679999999999999999999987766544444443433333333322 278899999999999988888999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-------hC--CcEEEeccCCCCC
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NG--LSFLETSAKSAHN  159 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~  159 (199)
                      |+|+++... .+....+....   ..+.|+++++||+|+.+..   ..........       ++  .+++++||++|+|
T Consensus       165 VVda~dgv~-~qT~e~i~~~~---~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVM-PQTIEAISHAK---AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCC-HhHHHHHHHHH---HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            999886421 11122222222   3478899999999986421   1222222222       22  4699999999999


Q ss_pred             HHHHHHHHHHH
Q 029103          160 VNELFYEIAKR  170 (199)
Q Consensus       160 v~~~~~~l~~~  170 (199)
                      ++++|++|...
T Consensus       238 I~eLl~~I~~~  248 (587)
T TIGR00487       238 IDELLDMILLQ  248 (587)
T ss_pred             hHHHHHhhhhh
Confidence            99999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.9e-22  Score=136.35  Aligned_cols=162  Identities=23%  Similarity=0.297  Sum_probs=121.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY   79 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~   79 (199)
                      ...+.|+|+|..++|||||+.++... +.        ....++.+.....    +.-....+.+||.+|++...++|..|
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~-~~~~~~~l~~~ki~~tvgLnig~----i~v~~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTD-FSKAYGGLNPSKITPTVGLNIGT----IEVCNAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHH-HHhhhcCCCHHHeecccceeecc----eeeccceeEEEEcCChHHHHHHHHHH
Confidence            34788999999999999999987642 21        1122333322222    22225568899999999999999999


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHH-HhCCCCceEEEEEeCCCCcccccCCHHHH-H---HHHHHhCCcEEEecc
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLEEKRKVKNEEG-E---LYAQENGLSFLETSA  154 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~s~  154 (199)
                      |..++++|+++|+++++.++.....+..+. +....+.|+++.+||.|+.+.....+... .   +...+..+++.++|+
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence            999999999999999999988876665544 44468999999999999976433222111 1   111234478999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q 029103          155 KSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .+|+|+++...|+...+.++
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999999886

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=4.8e-21  Score=157.40  Aligned_cols=159  Identities=18%  Similarity=0.206  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +.|+++|++++|||||+++|.+..   +.++....++.+.....+...+  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            478999999999999999998632   2333344455554444444444  78899999999999888888889999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC--HHHHHHHHHHh----CCcEEEeccCCCCCH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQEN----GLSFLETSAKSAHNV  160 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~s~~~~~~v  160 (199)
                      +|+|++++. ..+..+.+..+..   .++| ++|++||+|+.+.....  ..+...+....    +++++++|+++|+|+
T Consensus        79 LVVDa~~G~-~~qT~ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        79 LVVDADEGV-MTQTGEHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EEEECCCCC-cHHHHHHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence            999998731 1122222333332   2456 99999999997543221  22334444433    578999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 029103          161 NELFYEIAKRLAEVN  175 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (199)
                      +++++.|.+.+....
T Consensus       155 ~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       155 GELKKELKNLLESLD  169 (581)
T ss_pred             hhHHHHHHHHHHhCC
Confidence            999999988876644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.3e-21  Score=134.09  Aligned_cols=171  Identities=32%  Similarity=0.558  Sum_probs=150.3

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~   80 (199)
                      |+.++......+++++|.-|.||||++++...+.|...+..+.+.......+.-+...+++..|||.|++.+..+...++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            66666667799999999999999999999999999999999999999888887777789999999999999999999999


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      -+....|++||++...++..+.+|...+...+ .++|+++++||.|..+..  .......+.+..++.|+++|++.+.+.
T Consensus        81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999987774 559999999999976533  234445566677899999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029103          161 NELFYEIAKRLAEV  174 (199)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (199)
                      ..-|-|+.+.+.-.
T Consensus       158 ekPFl~LarKl~G~  171 (216)
T KOG0096|consen  158 ERPFLWLARKLTGD  171 (216)
T ss_pred             ccchHHHhhhhcCC
Confidence            99999999988653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=1.8e-21  Score=139.43  Aligned_cols=160  Identities=22%  Similarity=0.210  Sum_probs=107.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC------------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ..++|+++|+.++|||||+++|........                  .....+................+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            367999999999999999999997432110                  11112222222222223556789999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHh---
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN---  145 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~---  145 (199)
                      .|.......+..+|++|+|+|+.++-.. .....+..+...   +.|+++++||+|+...+..  .......+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            9888777788999999999999865322 233444445444   6779999999999732211  111111232332   


Q ss_pred             ---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          146 ---GLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       146 ---~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                         .++++++|+++|.|+.++++.|.+.+.
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               257999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=9.6e-21  Score=133.46  Aligned_cols=155  Identities=19%  Similarity=0.168  Sum_probs=100.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-----------cc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----------AP   77 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-----------~~   77 (199)
                      .++|+++|.+|+|||||+++|.+..... ...+..............+  ..+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999998764321 1122222222222333333  35779999997533110           12


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH-HHHHHHHHh----CCcEEEe
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE-EGELYAQEN----GLSFLET  152 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~----~~~~~~~  152 (199)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+....... ....+....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            245789999999999987654442 33333322   36789999999998754311111 122233333    3679999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~  170 (199)
                      |+++++|+.++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=3.4e-20  Score=155.92  Aligned_cols=154  Identities=15%  Similarity=0.196  Sum_probs=117.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----------cccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APMY   79 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----------~~~~   79 (199)
                      .++|+++|+||+|||||+|+|.+...  ......+.+.......+...+.++.+||+||+.++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            57899999999999999999987654  23445666666666666677788999999998766432          1123


Q ss_pred             --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           80 --YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        80 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                        ...+|++++|+|.++.+..   ..+..++.+   .+.|+++++||.|+.+.... ....+.+.+..+++++++|++++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence              2478999999999875432   234444444   36899999999998754444 44567788889999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 029103          158 HNVNELFYEIAKRLA  172 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~  172 (199)
                      +|++++++.+.+...
T Consensus       154 ~GIdeL~~~I~~~~~  168 (772)
T PRK09554        154 RGIEALKLAIDRHQA  168 (772)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999887653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1e-20  Score=134.53  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=95.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL   75 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~   75 (199)
                      +....++|+|+|.+|+|||||+++|.+..+........+.+........+.   .+.+||+||..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            345688999999999999999999998754333344444443333333332   58899999953          22223


Q ss_pred             cccccc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhC--Cc
Q 029103           76 APMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LS  148 (199)
Q Consensus        76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~  148 (199)
                      ...+++   .++++++|+|.+++.+.... .++..+..   .+.|+++++||+|+.+....  ...+........+  .+
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            334444   35799999999875433332 23333332   36889999999998643221  1222333333333  47


Q ss_pred             EEEeccCCCCCHH
Q 029103          149 FLETSAKSAHNVN  161 (199)
Q Consensus       149 ~~~~s~~~~~~v~  161 (199)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=2.7e-20  Score=134.65  Aligned_cols=117  Identities=19%  Similarity=0.300  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC-CEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~-d~~i~v~   90 (199)
                      +|+++|++|||||||+++|..+.+.....+.. ................+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999999887665544331 122221121123456789999999999988888888998 9999999


Q ss_pred             ECCCH-HHHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCcc
Q 029103           91 DITSM-DSFERAKKWVQELQR---QGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~  129 (199)
                      |.++. .++.....|+..+..   ...+++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 667766655544332   2236899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.2e-20  Score=130.94  Aligned_cols=151  Identities=20%  Similarity=0.165  Sum_probs=101.7

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-------cccccCCCEE
Q 029103           15 LLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PMYYRGAAAA   86 (199)
Q Consensus        15 v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-------~~~~~~~d~~   86 (199)
                      ++|++|+|||||++++.+..... .................. ....+.+||+||...+....       ..++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999998754432 111211112222222221 15678999999987654333       3478899999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++|+|..+........ +.....   ..+.|+++++||.|+.........   .........+.+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876555443 333332   358889999999998764433222   122333445678999999999999999


Q ss_pred             HHHHHHH
Q 029103          164 FYEIAKR  170 (199)
Q Consensus       164 ~~~l~~~  170 (199)
                      +++|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=1.2e-20  Score=139.07  Aligned_cols=165  Identities=16%  Similarity=0.058  Sum_probs=115.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc--------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMY   79 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~--------~~~~~~   79 (199)
                      .+.--|+++|.|+||||||+|+|.+.+..- .++...+++.....-......++.|+||||.....        ......
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            456679999999999999999999877543 33444444544555555568899999999965433        233455


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAH  158 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~  158 (199)
                      +..+|++++|+|++++..- .....++.++.   .+.|+++++||+|..............+..... ..++++||++|.
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            7899999999999864222 11233344443   467899999999987655421222233322222 468999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCC
Q 029103          159 NVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~~~  177 (199)
                      |++.+.+.+..++.+...-
T Consensus       159 n~~~L~~~i~~~Lpeg~~~  177 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWY  177 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCc
Confidence            9999999999999886544

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=1.5e-20  Score=156.32  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=110.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee--EEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--FFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ...+|+|+|++++|||||+++|....+........+..  .+.......+....+.||||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            46799999999999999999998776654333333222  2333333344568899999999999999998899999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHH------HHHhC--CcEEEeccCCCC
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY------AQENG--LSFLETSAKSAH  158 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~  158 (199)
                      |+|+|+++....+. ...+..+.   ..+.|+++++||+|+.....  ......+      ...++  ++++++||++|.
T Consensus       323 ILVVDA~dGv~~QT-~E~I~~~k---~~~iPiIVViNKiDl~~~~~--e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~  396 (742)
T CHL00189        323 ILIIAADDGVKPQT-IEAINYIQ---AANVPIIVAINKIDKANANT--ERIKQQLAKYNLIPEKWGGDTPMIPISASQGT  396 (742)
T ss_pred             EEEEECcCCCChhh-HHHHHHHH---hcCceEEEEEECCCccccCH--HHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence            99999987422222 12222222   35789999999999865321  1111111      12233  689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKRL  171 (199)
Q Consensus       159 ~v~~~~~~l~~~~  171 (199)
                      |++++|++|....
T Consensus       397 GIdeLle~I~~l~  409 (742)
T CHL00189        397 NIDKLLETILLLA  409 (742)
T ss_pred             CHHHHHHhhhhhh
Confidence            9999999998765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=1.9e-20  Score=156.84  Aligned_cols=157  Identities=20%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .....|+|+|+.++|||||+++|.+..+.......++.......+...  +..+.||||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            357889999999999999999998766654333333323222233333  467899999999999999888899999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHH--HHHHHHHhC--CcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEE--GELYAQENG--LSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~--~~~~~~~~~--~~~~~~s~~~~~~v~  161 (199)
                      +|||+++... .+....+....   ..+.|++|++||+|+.+...  +....  ...+...++  ++++++||++|.|++
T Consensus       366 LVVdAddGv~-~qT~e~i~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~  441 (787)
T PRK05306        366 LVVAADDGVM-PQTIEAINHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID  441 (787)
T ss_pred             EEEECCCCCC-HhHHHHHHHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence            9999987421 11112222222   34788999999999865321  10000  011122233  689999999999999


Q ss_pred             HHHHHHHHH
Q 029103          162 ELFYEIAKR  170 (199)
Q Consensus       162 ~~~~~l~~~  170 (199)
                      ++|++|...
T Consensus       442 eLle~I~~~  450 (787)
T PRK05306        442 ELLEAILLQ  450 (787)
T ss_pred             HHHHhhhhh
Confidence            999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=2.9e-20  Score=153.03  Aligned_cols=160  Identities=18%  Similarity=0.222  Sum_probs=113.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC-----------CcCccceeEEEEEEEe-----CCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~   70 (199)
                      .-.+|+|+|+.++|||||+++|+...  ....           .+...+.+.......+     ++..+.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34689999999999999999998631  1110           0112233333322222     4457899999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc--
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS--  148 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  148 (199)
                      .|...+..++..+|++|+|+|+++....+....|....    ..+.|+++++||+|+.+..  .......+....++.  
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            99888888999999999999999865444444444322    2467899999999986432  122234444445554  


Q ss_pred             -EEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          149 -FLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       149 -~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                       ++++||++|.|+.+++++|.+.+...
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence             89999999999999999999887653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=1.5e-20  Score=150.66  Aligned_cols=152  Identities=21%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--------cccccccccccCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYRGA   83 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~~~~~   83 (199)
                      +|+++|.+|||||||+|+|.+.... ......+.+...........+..+.+|||||..        .+......++..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            5899999999999999999976532 122223333322222222234568999999963        2334455678999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE  162 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  162 (199)
                      |++++|+|..++.+... ..+...+..   .+.|+++|+||+|+.+....    ..++ ..++. .++++||++|.|+.+
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~~  150 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIGD  150 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChHH
Confidence            99999999987533322 223333333   36789999999998653321    2222 34565 799999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +++++.+.+.+
T Consensus       151 ll~~i~~~l~~  161 (429)
T TIGR03594       151 LLDAILELLPE  161 (429)
T ss_pred             HHHHHHHhcCc
Confidence            99999988755

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=1.1e-20  Score=123.73  Aligned_cols=161  Identities=20%  Similarity=0.236  Sum_probs=120.3

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +...+++|+++|--++|||||+..|.+... ....++.++.......   ...+.+++||++|+..-+..|.+||.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence            346799999999999999999999985443 3345666555443332   456889999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHH-HhCCCCceEEEEEeCCCCcccccCCHHHHH---HHHHHhCCcEEEeccCCCCCHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLEEKRKVKNEEGE---LYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||+|.+|...++++...+-++. .......|++|..||.|+..+...++....   ...+..-+.+..+|+..++|+.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            999999999888888865555544 444688999999999998654333221111   1111223467899999999999


Q ss_pred             HHHHHHHHH
Q 029103          162 ELFYEIAKR  170 (199)
Q Consensus       162 ~~~~~l~~~  170 (199)
                      +-.+|+...
T Consensus       169 dg~~wv~sn  177 (185)
T KOG0074|consen  169 DGSDWVQSN  177 (185)
T ss_pred             CcchhhhcC
Confidence            998887653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=3.9e-20  Score=152.18  Aligned_cols=146  Identities=20%  Similarity=0.209  Sum_probs=105.4

Q ss_pred             cCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc------ccccc--cCCCEEEE
Q 029103           17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVV   88 (199)
Q Consensus        17 G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~------~~~~~--~~~d~~i~   88 (199)
                      |++|+|||||+|+|.+........+..+.+........++  ..+.+||+||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765433344444444444444443  46789999999876543      23333  37899999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |+|.++.+.   ...+..++.+   .+.|+++++||+|+.+..... ...+.+.+..+++++++|+++|+|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   1233333332   478999999999987654443 346778888899999999999999999999998


Q ss_pred             HHH
Q 029103          169 KRL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=5.3e-20  Score=147.70  Aligned_cols=161  Identities=18%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-----------cc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----------AP   77 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-----------~~   77 (199)
                      ..++|+++|.+|+|||||+++|++..... .....+++.......+...+..+.+|||||.......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            47999999999999999999999754211 1222333443333333333456789999996432211           12


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH----HHhCCcEEEec
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA----QENGLSFLETS  153 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~s  153 (199)
                      .++..+|++++|+|++++.+.... .+...+..   .+.|+++++||+|+.+.... ......+.    ....++++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEe
Confidence            357889999999999987655443 33344433   36789999999998743211 11111222    22357899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      |+++.|+.++|+.+.+.+....
T Consensus       326 A~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999988776543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=6.9e-20  Score=147.04  Aligned_cols=148  Identities=20%  Similarity=0.181  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR   81 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--------~~~~~~~~~~   81 (199)
                      .+|+++|.+|||||||+++|.+.... ....+..+.+.........+  ..+.+|||||+..        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            47999999999999999999976532 11222233333333444443  7789999999876        1222345678


Q ss_pred             CCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCC
Q 029103           82 GAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAH  158 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~  158 (199)
                      .+|++++|+|+.++.+..  .+..|+.   .   .+.|+++++||+|..+.    .....++ ...++. ++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998753322  2233333   2   27889999999996541    1222333 244553 8999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKRL  171 (199)
Q Consensus       159 ~v~~~~~~l~~~~  171 (199)
                      |+.++|+.|....
T Consensus       149 gv~~l~~~I~~~~  161 (435)
T PRK00093        149 GIGDLLDAILEEL  161 (435)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998743

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1e-19  Score=153.33  Aligned_cols=156  Identities=23%  Similarity=0.189  Sum_probs=105.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--------cccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------HSLAPMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--------~~~~~~~~   80 (199)
                      ...+|+|+|.++||||||+|+|++.... ......+++...........+..+.+|||||.+..        ......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            3578999999999999999999976532 12334444444444433333457889999997632        22334567


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|++++|+|+++...... ..|...+..   .+.|+++|+||+|+....   ......+....+ ..+++||++|.|+
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~GI  424 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRGV  424 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCCc
Confidence            89999999999986422111 244444443   478999999999985421   111222222222 4679999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029103          161 NELFYEIAKRLAE  173 (199)
Q Consensus       161 ~~~~~~l~~~~~~  173 (199)
                      .++|++|.+.+..
T Consensus       425 ~eLl~~i~~~l~~  437 (712)
T PRK09518        425 GDLLDEALDSLKV  437 (712)
T ss_pred             hHHHHHHHHhccc
Confidence            9999999998854

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=6.5e-20  Score=146.53  Aligned_cols=156  Identities=16%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh--CCCCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD---------------------------FQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ....++|+++|+.++|||||+++|+.  +....                           ......+++.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            45689999999999999999999985  21111                           01112244444445556666


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccc---
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK---  132 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---  132 (199)
                      ...+.+||+||++.|.......+..+|++++|+|++++++...  ...++......  ...|++|++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence            7889999999999887666667789999999999998743211  11222222222  2357899999999864211   


Q ss_pred             -CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 029103          133 -VKNEEGELYAQENG-----LSFLETSAKSAHNVNELF  164 (199)
Q Consensus       133 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~  164 (199)
                       ....+...+.+..+     ++++++||++|+|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             11234445555554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=3.6e-19  Score=122.11  Aligned_cols=160  Identities=22%  Similarity=0.302  Sum_probs=115.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-----CcCccc---eeEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-----QESTIG---AAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLA   76 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-----~~~~~~---~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~   76 (199)
                      ....+.||+|.|+.++||||++++++.......     ..+..+   ++...-...+. +....++++++|||+++.-+|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            445789999999999999999999987543111     011111   22222222222 233678999999999999999


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh--CCcEEEecc
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN--GLSFLETSA  154 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~  154 (199)
                      ..+.+++.++|+++|.+++..+ .....+..+....+  +|++|..||.|+.+.+  +.+...+.....  ..+++..++
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeec
Confidence            9999999999999999988777 33455555544422  8999999999998754  344444443333  789999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAKR  170 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~  170 (199)
                      .++++..+.++.+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999999888766

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=8.7e-20  Score=145.83  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=104.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ..+.++|+++|++++|||||+++|+...-  ..                           ..+...+++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            35689999999999999999999984211  00                           01123445555555666667


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----  132 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----  132 (199)
                      .+.+.+|||||++.|.......+..+|++++|+|+++.... .....++......  ...|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            78899999999988876655567889999999999873112 2222233333322  2346899999999864211    


Q ss_pred             CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 029103          133 VKNEEGELYAQENG-----LSFLETSAKSAHNVNELF  164 (199)
Q Consensus       133 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~  164 (199)
                      ....+...+....+     ++++++||++|+|+.+..
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11123344444444     569999999999998754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=7.5e-20  Score=145.09  Aligned_cols=163  Identities=18%  Similarity=0.137  Sum_probs=105.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEE------------------EEEEeCC------eEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFT------------------QVLSLNE------VTIK   60 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~~------~~~~   60 (199)
                      +.+++|+++|++++|||||+++|.+....   ++..+..+.....                  ....++.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            56899999999999999999999753221   1111111111100                  0000011      1467


Q ss_pred             EEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHH
Q 029103           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG  138 (199)
Q Consensus        61 v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~  138 (199)
                      +.+||+||+++|...+......+|++++|+|++++....+..+.+..+...  ...|+++++||+|+.+.....  ..+.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999887777788899999999998643122333333333322  234689999999987532211  1222


Q ss_pred             HHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          139 ELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       139 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      ..+....   +++++++|+++|+|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2333222   578999999999999999999988764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=140.67  Aligned_cols=155  Identities=21%  Similarity=0.203  Sum_probs=116.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~   80 (199)
                      ..++|+++|.|+||||||+|.|++.. ..-...-.++++...+..++-.++.+.+.||+|.++....        ....+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d-~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRD-RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCC-ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            47899999999999999999999643 3445566677777777777777788899999998755433        23457


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|.+++|+|.+.+.+-... ..+.    ....+.|+++|.||.|+.........     ....+.+++.+|+++++|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence            899999999999986322222 2222    23567899999999999875442211     2223457899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029103          161 NELFYEIAKRLAEV  174 (199)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (199)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998776

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=3.7e-19  Score=145.68  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----ccceeEEEEEE------------EeCCeEEEEEEEeCCCccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      ..-|+++|++++|||||+++|.+..+......    .++........            .+......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34689999999999999999998765432221    11211111100            000111238899999999999


Q ss_pred             ccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC----C--------HHH-
Q 029103           74 SLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----K--------NEE-  137 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~~-  137 (199)
                      .++..++..+|++++|+|+++   +.+++.+    ..+..   .+.|+++++||+|+.+.+..    .        ... 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            988889999999999999987   3443332    22222   36789999999998642210    0        000 


Q ss_pred             -----------HHHHHH--------------HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          138 -----------GELYAQ--------------ENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       138 -----------~~~~~~--------------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                                 ...+..              ....+++++||++|+|+++++.+|..+..+
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                       001111              013579999999999999999998765544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.82  E-value=2.2e-19  Score=142.40  Aligned_cols=168  Identities=17%  Similarity=0.146  Sum_probs=104.8

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEEE--EE----------------EeC------C
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQ--VL----------------SLN------E   56 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~~--~~----------------~~~------~   56 (199)
                      ++...+.++|+++|+.++|||||+.+|.+....   ++.....+......  ..                ..+      .
T Consensus         3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            455677899999999999999999999653111   11112122111100  00                000      0


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--  134 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--  134 (199)
                      ....+.+||+||++.|..........+|++++|+|++++.........+..+...  ...|+++++||+|+.+.....  
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~  160 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALEN  160 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHH
Confidence            1357899999999888765555566789999999998643111112222223222  224689999999987533211  


Q ss_pred             HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ..+...+...   .+.+++++|+++|+|++++++.|...+..
T Consensus       161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            1222333322   24789999999999999999999887643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=1.8e-19  Score=147.95  Aligned_cols=160  Identities=17%  Similarity=0.215  Sum_probs=115.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCC------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA   76 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~   76 (199)
                      .+|+|+|+.++|||||+++|+..  .+...            .....+++.......+.+.+.++.+|||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            37999999999999999999862  22211            11223455555556666677899999999999998888


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHH-------HHhCCc
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENGLS  148 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~~  148 (199)
                      ..++..+|++++|+|+.+. ...+...|+..+...   ++|+++++||+|+.+.+... ..+...+.       ....++
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            8899999999999999863 244455666666543   67889999999986533211 12222222       223578


Q ss_pred             EEEeccCCCC----------CHHHHHHHHHHHHHhh
Q 029103          149 FLETSAKSAH----------NVNELFYEIAKRLAEV  174 (199)
Q Consensus       149 ~~~~s~~~~~----------~v~~~~~~l~~~~~~~  174 (199)
                      ++.+|+++|.          |+..+|+.|.+.+...
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999995          7999999998887643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=2.7e-18  Score=126.63  Aligned_cols=151  Identities=22%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~~d   84 (199)
                      +|+++|++|+|||||+++|.+........+..+.+.....+...  ...+++||+||..+...       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999765332222222222223333333  46788999999754321       1234688999


Q ss_pred             EEEEEEECCCHH-HHHHHHHHHHH-----------------------------------------HHHhC----------
Q 029103           85 AAVVVYDITSMD-SFERAKKWVQE-----------------------------------------LQRQG----------  112 (199)
Q Consensus        85 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~~----------  112 (199)
                      ++++|+|++++. ..+.+...+..                                         +.++.          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 33333222211                                         00010          


Q ss_pred             --------------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          113 --------------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       113 --------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                                    ....|+++|+||+|+.+.     .+...++.  ...++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                          123689999999998542     23334443  34689999999999999999998866

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=2.3e-19  Score=139.21  Aligned_cols=153  Identities=17%  Similarity=0.114  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------cccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYR   81 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------~~~~~~~~   81 (199)
                      ..|+|+|.|+||||||+|+|.+.... ......++++..........+..|.++||+|.+...         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~A-IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIA-IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeee-EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            57999999999999999999976543 234445555555555555556669999999976433         12345688


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      .+|++|||+|....-+-.+ ....+.++   ..++|+++|+||+|-..    .+....++....-..++.+||.+|.|+.
T Consensus        83 eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi~  154 (444)
T COG1160          83 EADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGIG  154 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCHH
Confidence            9999999999876433222 23333333   24688999999999652    2333444544444569999999999999


Q ss_pred             HHHHHHHHHHH
Q 029103          162 ELFYEIAKRLA  172 (199)
Q Consensus       162 ~~~~~l~~~~~  172 (199)
                      ++++.++..+.
T Consensus       155 dLld~v~~~l~  165 (444)
T COG1160         155 DLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHhhcC
Confidence            99999999974

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=5.6e-19  Score=148.83  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=107.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc-c
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLA-P   77 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~-~   77 (199)
                      .++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||..+          |..+. .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            589999999999999999999987532 122222333333333444443  466999999642          11111 2


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hCCcEEEec
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLETS  153 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s  153 (199)
                      ..+..+|++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.+.... ......+...    ...+++++|
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~-~~~~~~~~~~l~~~~~~~ii~iS  602 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRR-QRLERLWKTEFDRVTWARRVNLS  602 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHH-HHHHHHHHHhccCCCCCCEEEEE
Confidence            3468899999999999887666643 4444433   46899999999998653221 1111112111    134679999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      |++|.|++++|+.+.+.+.+...+
T Consensus       603 Aktg~gv~~L~~~i~~~~~~~~~~  626 (712)
T PRK09518        603 AKTGWHTNRLAPAMQEALESWDQR  626 (712)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999988765444

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.5e-20  Score=121.68  Aligned_cols=161  Identities=22%  Similarity=0.325  Sum_probs=118.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .+.+|+++|.-|+||++++.++.-+.... ..++++...    .++...+.++++||.+|+-+....|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            68999999999999999998876544322 334444332    2334477889999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+|.+|.+...... .++..+.+....+..+++++||.|.....   +........-.+..-+.++..||.+|+|++...
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            99999988775554 44444544445667788999999985421   111111122222233679999999999999999


Q ss_pred             HHHHHHHHhh
Q 029103          165 YEIAKRLAEV  174 (199)
Q Consensus       165 ~~l~~~~~~~  174 (199)
                      +||.+-+.++
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999988653

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.1e-18  Score=143.29  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh--CCCCCC------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK--GQFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      -.+|+|+|+.++|||||+++|+.  +.+...            .....+.++......+....+++.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999996  332221            1234566666777777778899999999999999999


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHH-------HHhCC
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENGL  147 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~  147 (199)
                      +..+++.+|++++|+|+++... .+...++.....   .+.|.++++||+|+....... ..+...+.       ....+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            9999999999999999987432 223334443333   367889999999987533211 11222222       12347


Q ss_pred             cEEEeccCCCC----------CHHHHHHHHHHHHHhh
Q 029103          148 SFLETSAKSAH----------NVNELFYEIAKRLAEV  174 (199)
Q Consensus       148 ~~~~~s~~~~~----------~v~~~~~~l~~~~~~~  174 (199)
                      +++.+|+++|.          ++..+++.|++.+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            89999999998          5888888888877543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=8.8e-19  Score=122.81  Aligned_cols=151  Identities=19%  Similarity=0.249  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------cccccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAPMYYR   81 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~~~~~~   81 (199)
                      .|+++|.+|+|||||++.+.++.......+..+.+..........   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996555554555555444443333333   788999999533          2233333443


Q ss_pred             ---CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHH--HHhCCcEEEe
Q 029103           82 ---GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYA--QENGLSFLET  152 (199)
Q Consensus        82 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~--~~~~~~~~~~  152 (199)
                         +.+++++++|..+...  ...+..|+.   ..   +.|+++++||+|+.+......  .......  .....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4578889999876522  122233332   22   578999999999854322111  1111112  1344678999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~  171 (199)
                      |++++.++.+++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=1.6e-18  Score=124.38  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=98.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      .++|+++|+.++|||||+++|+.....              ...+...+++.......+.....++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999863100              001112344444555556666778899999999888777


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC---HHHHHHHHHHh-----C
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQEN-----G  146 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-----~  146 (199)
                      ....+..+|++++|+|+...-. .....++..+...   +.| +++++||+|+.......   ..+...+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7777889999999999986422 2233444444443   455 67889999986322211   12233333333     3


Q ss_pred             CcEEEeccCCCCCH
Q 029103          147 LSFLETSAKSAHNV  160 (199)
Q Consensus       147 ~~~~~~s~~~~~~v  160 (199)
                      ++++++|+++|.++
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            67999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.9e-19  Score=129.23  Aligned_cols=149  Identities=21%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC-----------------------------CcCccceeEEEEEEEeCCeEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF-----------------------------QESTIGAAFFTQVLSLNEVTIKFD   62 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~   62 (199)
                      +|+|+|++|+|||||+++|+...-.-.                             .....+++.......+...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999976321100                             001123333333344445566788


Q ss_pred             EEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC----CHHHH
Q 029103           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----KNEEG  138 (199)
Q Consensus        63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~  138 (199)
                      +|||||++.|...+...+..+|++++|+|++++..- ........+...  ...++++++||+|+.+....    ...+.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            999999988766666678899999999999875321 112222222222  22457788999998642210    11233


Q ss_pred             HHHHHHhC---CcEEEeccCCCCCHHHH
Q 029103          139 ELYAQENG---LSFLETSAKSAHNVNEL  163 (199)
Q Consensus       139 ~~~~~~~~---~~~~~~s~~~~~~v~~~  163 (199)
                      ..+....+   .+++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            34444455   35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-18  Score=128.21  Aligned_cols=172  Identities=14%  Similarity=0.144  Sum_probs=116.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc------------
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------------   72 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~------------   72 (199)
                      +..++.+.|+|+|+|+||||||.|.+.+.+... .+....+++......+.....++.|+||||.-.-            
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            345689999999999999999999999877665 3444556666667777778889999999994211            


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc-------------cCCH---H
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR-------------KVKN---E  136 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~~~~---~  136 (199)
                      -...+..+..+|.+++++|+++....-. ...+..+..+  .++|.++++||.|.....             ....   +
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            1233456788999999999996422111 1222233333  467789999999974311             1111   1


Q ss_pred             HHHHHHHHh---------CC----cEEEeccCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 029103          137 EGELYAQEN---------GL----SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT  180 (199)
Q Consensus       137 ~~~~~~~~~---------~~----~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~~~  180 (199)
                      -...+....         ++    .+|.+||+.|+|++++-++|...+....+....
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a  279 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPA  279 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCc
Confidence            111121111         12    389999999999999999999888776655433

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=2.3e-18  Score=142.15  Aligned_cols=157  Identities=13%  Similarity=0.129  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      -|+++|+.++|||||+++|.+..   +.++....++++.....+... .+..+.+||+||++.|...+...+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999998633   222233333333322222222 23458899999999997777777889999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC--HHHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQENG---LSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      |+|+++.- ..+..+.+..+...   +.| ++||+||+|+.+.....  ..+...+....+   .+++++|+++|+|+++
T Consensus        81 VVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            99988631 22323333333332   344 57999999987533221  122333333333   6899999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +++.|.+....
T Consensus       157 L~~~L~~~~~~  167 (614)
T PRK10512        157 LREHLLQLPER  167 (614)
T ss_pred             HHHHHHHhhcc
Confidence            99999876544

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.79  E-value=6.5e-21  Score=130.38  Aligned_cols=170  Identities=32%  Similarity=0.567  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCcccccccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..-++++|+|..|+|||+++.++....+...+..+++.++......-++. .++++|||+.|++++..+...+++.+.+.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            34689999999999999999999998888888888888877666655443 46789999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhCC-cEEEeccCCCCCH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGL-SFLETSAKSAHNV  160 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~~~~~v  160 (199)
                      ++|||+++...++.+..|.+.+....    ....|+++..||+|........ ......+.+++|. ..+++|++.+.++
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            99999999999999999998876533    2456678889999986533332 3556788888886 4899999999999


Q ss_pred             HHHHHHHHHHHHhhCCC
Q 029103          161 NELFYEIAKRLAEVNPS  177 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~~~  177 (199)
                      +|.-..|++++..+..+
T Consensus       183 ~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  183 PEAQRELVEKILVNDEQ  199 (229)
T ss_pred             hHHHHHHHHHHHhhccC
Confidence            99999999999887643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=5e-18  Score=131.85  Aligned_cols=168  Identities=19%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------c
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----------P   77 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-----------~   77 (199)
                      ..++|+|+|.|++|||||+|+|++.. ........++++......+.....++.++||+|...-....           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgee-R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEE-RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCc-eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            46999999999999999999999754 23345566677777666666556677899999965322211           2


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-HHHHH----hCCcEEEe
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-LYAQE----NGLSFLET  152 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~~  152 (199)
                      ..+..+|++++|+|++.+.+-+.. +....+.+   .+.+++|++||.|+.+.+.......+ .+...    ...+++++
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            346789999999999987655553 44444443   47779999999998765333333322 22222    23578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 029103          153 SAKSAHNVNELFYEIAKRLAEVNPSRQTG  181 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~~~~~~~~~~~  181 (199)
                      ||+++.++.++|+.+.+..........++
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~~~~ri~Ts  360 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYECATRRISTS  360 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHHhccccCHH
Confidence            99999999999999988877665554433

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=5.2e-18  Score=139.39  Aligned_cols=157  Identities=23%  Similarity=0.211  Sum_probs=100.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----ccceeEEEEEEE--eCCeE-----E-----EEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS--LNEVT-----I-----KFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~v~l~d~~g~~~~   72 (199)
                      ....|+++|++++|||||+++|.+.........    ..+.........  ..+..     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            455799999999999999999986543322221    111111111000  00111     1     2689999999999


Q ss_pred             cccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC----H--------HH
Q 029103           73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N--------EE  137 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~--------~~  137 (199)
                      ..++...+..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+...+...    .        ..
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9888888899999999999987   44444432    2222   478899999999985321100    0        00


Q ss_pred             -----------HHHHHHH---------------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          138 -----------GELYAQE---------------NGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       138 -----------~~~~~~~---------------~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                                 .......               ..++++++|+++|+|++++++.+...+.
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~  218 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ  218 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence                       0001111               1357899999999999999998876543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.79  E-value=3.6e-18  Score=135.06  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=106.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|+.++|||||+++|++....              ...+...+++.......+.....++.++|+||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            356899999999999999999999863110              011123344444555556556678899999999988


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHhC--
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG--  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~--  146 (199)
                      .......+..+|++++|+|+++... .+...++..+...   +.| +++++||+|+.+..+...   .+...+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            7666666788999999999986421 2223444444433   566 578899999874322211   23334434443  


Q ss_pred             ---CcEEEeccCCCC--------CHHHHHHHHHHHHH
Q 029103          147 ---LSFLETSAKSAH--------NVNELFYEIAKRLA  172 (199)
Q Consensus       147 ---~~~~~~s~~~~~--------~v~~~~~~l~~~~~  172 (199)
                         ++++++|+++|.        ++.++++.|.+.+.
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence               579999999983        46666666666554

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=2.7e-18  Score=126.80  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC--------------C--CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFF--------------D--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      +|+++|++|+|||||+++|+...-.              +  ......+.+.......+.....++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863110              0  00112233344455555666788999999999998888


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      +..++..+|++++|+|+++.... ....++..+..   .+.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            88899999999999999876432 33455555543   367899999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.78  E-value=8.5e-18  Score=133.00  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|++++|||||+++|++...              ....+...+++.......+.....++.|+||||++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            35689999999999999999999986210              0011122344444445555556678899999999888


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHhC--
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG--  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--  146 (199)
                      .......+..+|++++|+|+.+.. ..+..+++..+...   ++|.+ +++||+|+.+..+..   ..+...+...++  
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            766666778899999999998642 22233444444433   56655 579999986422211   123344444433  


Q ss_pred             ---CcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 029103          147 ---LSFLETSAKSAH----------NVNELFYEIAKRLA  172 (199)
Q Consensus       147 ---~~~~~~s~~~~~----------~v~~~~~~l~~~~~  172 (199)
                         ++++++|++++.          ++.++++.|...+.
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence               678999999984          56677776666543

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=3.5e-18  Score=124.72  Aligned_cols=113  Identities=22%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------------cCccceeEEEEEEEe-----CCeEEEEEEEeCCCc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------------ESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQ   69 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~   69 (199)
                      +|+|+|+.|+|||||+++|+........                 ....+.+.......+     ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432110                 011112221112211     345688999999999


Q ss_pred             ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ..|......++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888888999999999999987654432 344444332   358899999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.1e-18  Score=127.77  Aligned_cols=148  Identities=16%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC--C---------------------------CCCcCccceeEEEEEEEeCCeEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEVTIKFD   62 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~   62 (199)
                      +|+++|++++|||||+.+|+...-  .                           .......+++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999964210  0                           00111223344444455555677899


Q ss_pred             EEeCCCcccccccccccccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---c-
Q 029103           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD------SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---K-  132 (199)
Q Consensus        63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~-  132 (199)
                      +||+||+..|...+...+..+|++++|+|++++.      ...+....+......  ...|+++++||+|+....   . 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            9999999877766666678899999999998742      111222222222222  236789999999987321   0 


Q ss_pred             CC--HHHHHHHHHHh-----CCcEEEeccCCCCCHH
Q 029103          133 VK--NEEGELYAQEN-----GLSFLETSAKSAHNVN  161 (199)
Q Consensus       133 ~~--~~~~~~~~~~~-----~~~~~~~s~~~~~~v~  161 (199)
                      ..  ......+....     +++++++||++|+|+.
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            00  11122223333     3579999999999976

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=5.4e-18  Score=137.20  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--c
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--R   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~--~   81 (199)
                      ..+|+++|+|++|||||+|+|++.+..  .....+++...++..+...+.+++++|.||.-+...      ..+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~--VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQK--VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCce--ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            467999999999999999999986543  344456666666666666666688999999643322      223333  4


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +.|+++-|+|+++.+.--+   +--++.+.   +.|+++++|++|.....- -....+.+.+..|+|+++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLy---ltlQLlE~---g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLY---LTLQLLEL---GIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHH---HHHHHHHc---CCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            5699999999988643222   22223333   777999999999865433 3666788889999999999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++...+.+....+.
T Consensus       154 ~l~~~i~~~~~~~~  167 (653)
T COG0370         154 ELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHhccccc
Confidence            99999887766544

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=123.72  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----ccccc---ccCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LAPMY---YRGA   83 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----~~~~~---~~~~   83 (199)
                      ..|.++|.|++|||||+++|+..+..-......+......+...++ ..++.+-|+||.-+-..    +-..|   +..+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            4578999999999999999998765322222222222222333332 33489999999643332    22333   5678


Q ss_pred             CEEEEEEECCCH---HHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCC
Q 029103           84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSA  157 (199)
Q Consensus        84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~  157 (199)
                      +.++||+|++.+   ..+++++.+..++..+.  ....|.+||+||+|+++..   ......+++...-+ ++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999988   77777777766665543  4788999999999986432   22245566655544 899999999


Q ss_pred             CCHHHHHHHHHHH
Q 029103          158 HNVNELFYEIAKR  170 (199)
Q Consensus       158 ~~v~~~~~~l~~~  170 (199)
                      +++.++++.|-+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999877553

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=6.9e-18  Score=133.56  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=97.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|+.++|||||+++|++...              ....+...+++.......+.....++.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            45689999999999999999999974200              0011122344444455556666678999999999988


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHhC--
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG--  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--  146 (199)
                      ..........+|++++|+|+.+.-. .+..+.+..+...   +.|.+ +++||+|+.+..+..   ..+...+...++  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            7666556678899999999986321 2223344444333   45555 689999987533211   123444555544  


Q ss_pred             ---CcEEEeccCCCC
Q 029103          147 ---LSFLETSAKSAH  158 (199)
Q Consensus       147 ---~~~~~~s~~~~~  158 (199)
                         ++++++|++++.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=127.15  Aligned_cols=162  Identities=20%  Similarity=0.174  Sum_probs=118.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccccc------cc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPM------YY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~~~------~~   80 (199)
                      .-..|.++|-.++|||||+|+|.+........-..+.+...+.+.+.+ +..+.+.||.|.-.  ...+...      -.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            467899999999999999999997655444444445555666666655 55788999999421  1112122      25


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|+++.|+|+++|+..+.+..-...+.+.....+|+++++||+|+.....    ....+....+ ..+.+||++|+|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence            7899999999999998878877777777777677899999999999765433    1111111122 5899999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 029103          161 NELFYEIAKRLAEVNP  176 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (199)
                      +.+.+.|.+.+.....
T Consensus       345 ~~L~~~i~~~l~~~~~  360 (411)
T COG2262         345 DLLRERIIELLSGLRT  360 (411)
T ss_pred             HHHHHHHHHHhhhccc
Confidence            9999999999886543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.77  E-value=2.2e-18  Score=115.63  Aligned_cols=135  Identities=21%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc----ccccccccccccCCCEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~----~~~~~~~~~~~~~~d~~i   87 (199)
                      ||+++|+.|+|||||+++|.+....  +..++.+.            +.=.++||||.    ..+....-....++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            7999999999999999999875432  23333211            12235799994    223333334457899999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++.|++++.+.-.. .    +...  -+.|++=|+||+|+..... ....+..+.+..|+ .+|.+|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~pP-~----fa~~--f~~pvIGVITK~Dl~~~~~-~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFPP-G----FASM--FNKPVIGVITKIDLPSDDA-NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCCc-h----hhcc--cCCCEEEEEECccCccchh-hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            99999987543221 1    1111  2578999999999983222 34455566666665 4799999999999999998


Q ss_pred             HH
Q 029103          167 IA  168 (199)
Q Consensus       167 l~  168 (199)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.77  E-value=1.8e-17  Score=121.31  Aligned_cols=153  Identities=16%  Similarity=0.175  Sum_probs=96.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc-----------------------cceeEEEE-------------EEEeC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-----------------------IGAAFFTQ-------------VLSLN   55 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~~~   55 (199)
                      ||+++|+.++|||||+++|..+.+.+.....                       .+.+....             ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999975553311100                       00110000             01112


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      .....+.++|+||++.|.......+.  .+|++++|+|+..+.. .....++..+...   ++|+++++||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            23457899999999988654443343  6899999999876432 2234444544443   5789999999998643322


Q ss_pred             CHHHHHHHHHHh-----------------------------CCcEEEeccCCCCCHHHHHHHHHH
Q 029103          134 KNEEGELYAQEN-----------------------------GLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       134 ~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      . .....+....                             ..+++.+|+.+|+|+++++..|..
T Consensus       157 ~-~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 Q-ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             H-HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1 1111121111                             248999999999999999987643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.77  E-value=1.8e-17  Score=131.72  Aligned_cols=149  Identities=15%  Similarity=0.133  Sum_probs=100.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|++++|||||+++|++....              ...+...+++.......+.....++.++||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            357899999999999999999999974110              111222344444444555556678889999999888


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHhC--
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG--  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~--  146 (199)
                      .......+..+|++++|+|+.+.. ..+....+..+...   ++| +++++||.|+.+..+..+   .+...+....+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            776677788999999999998642 22333444444433   456 678899999975332111   23333333333  


Q ss_pred             ---CcEEEeccCCCCC
Q 029103          147 ---LSFLETSAKSAHN  159 (199)
Q Consensus       147 ---~~~~~~s~~~~~~  159 (199)
                         ++++++|+.+|++
T Consensus       165 ~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        165 GDDIPIVSGSALLALE  180 (409)
T ss_pred             CCcceEEEcchhhccc
Confidence               6799999999874

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=4e-17  Score=114.45  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=109.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------cccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAPM   78 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~~~~   78 (199)
                      ....|+++|.++||||||+|+|++.+-....+.++|.+.....+..++.   +.++|.||..          ....+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            4678999999999999999999987766667888888888888877765   6699999932          22233334


Q ss_pred             cccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH---HHHHHHHhCCc--EE
Q 029103           79 YYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE---GELYAQENGLS--FL  150 (199)
Q Consensus        79 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~--~~  150 (199)
                      |+..   ..++++++|+..+-.-.+ +..++-+.   ..++|++|++||.|.....+.....   ...+.......  ++
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~  175 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLD-REMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV  175 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHH-HHHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEE
Confidence            4433   468888999875432212 13333333   2488899999999987654432211   11222222233  78


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHh
Q 029103          151 ETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      .+|+..+.|++++...|.+.+..
T Consensus       176 ~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         176 LFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEecccccCHHHHHHHHHHHhhc
Confidence            99999999999999999988765

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=1.7e-17  Score=121.14  Aligned_cols=168  Identities=18%  Similarity=0.273  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCccccccc-----ccccccCCCE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSL-----APMYYRGAAA   85 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~-----~~~~~~~~d~   85 (199)
                      ||+++|++||||||+.+.+..+.. +......+.+.......+ ....+.+.+||+||+..+...     ....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999985543 323333333333333333 244568999999999765543     4667899999


Q ss_pred             EEEEEECCCHHHHHHH---HHHHHHHHHhCCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHhC---CcEEEec
Q 029103           86 AVVVYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENG---LSFLETS  153 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~---~~~~~~s  153 (199)
                      +|||+|+.+.+..+.+   ...+..+.+. .+++.+.|+++|+|+.......      .....+.....+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999999844433443   3444444444 6889999999999985422111      111222333344   7799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVNPSRQTGM  182 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~  182 (199)
                      ..+ +.+-+.|..|++.+..+.+.-+..+
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le~~L  186 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLENLL  186 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence            998 7999999999999887655544443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.3e-17  Score=128.97  Aligned_cols=160  Identities=15%  Similarity=0.141  Sum_probs=104.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|+.++|||||+++|++....              ...+...+++.......+.....++.++||||+..|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            367899999999999999999999863110              011122344444445555556678899999999888


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHh---
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN---  145 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~---  145 (199)
                      .......+..+|++++|+|+.++. ......++..+...   +.|.+ +++||+|+.+.....   ..+...+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            766666788999999999998642 22333444444433   56765 579999986422211   11222333322   


Q ss_pred             --CCcEEEeccCCCC----------CHHHHHHHHHHH
Q 029103          146 --GLSFLETSAKSAH----------NVNELFYEIAKR  170 (199)
Q Consensus       146 --~~~~~~~s~~~~~----------~v~~~~~~l~~~  170 (199)
                        +++++++|++++.          ++..+++.|...
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence              3689999999875          345555555544

>PLN03127 Elongation factor Tu; Provisional

Probab=99.74  E-value=8e-17  Score=128.70  Aligned_cols=162  Identities=15%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhC------CC-------C-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG------QF-------F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~------~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|+.++|||||+++|.+.      ..       . ...+...+++.......+.....++.++||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            456899999999999999999999732      10       0 011222444555555666666778999999999888


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCHH---HHHHHHHHh---
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKNE---EGELYAQEN---  145 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~---~~~~~~~~~---  145 (199)
                      .......+..+|++++|+|+.+.. ..+....+..+...   ++| +++++||+|+.+..+....   +...+....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            666555667899999999987642 22233444444433   567 4678999998753221111   122222221   


Q ss_pred             --CCcEEEeccC---CCCC-------HHHHHHHHHHHHH
Q 029103          146 --GLSFLETSAK---SAHN-------VNELFYEIAKRLA  172 (199)
Q Consensus       146 --~~~~~~~s~~---~~~~-------v~~~~~~l~~~~~  172 (199)
                        .++++++|+.   ++++       +.++++.|.+.+.
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence              3678888876   4444       5666666665543

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=5.1e-17  Score=121.14  Aligned_cols=159  Identities=20%  Similarity=0.202  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-cc----ccc----ccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RY----HSL----APMYY   80 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-~~----~~~----~~~~~   80 (199)
                      ...|+|.|.|+||||||++.+++.+..-  .+-..++-......+.....+++++||||.- +.    +.+    ....-
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            5689999999999999999999876543  2333333444455556667789999999952 11    111    11122


Q ss_pred             cCCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           81 RGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        81 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      .-.++++|+||.+.  ..+++....++.++...-.  .|+++|+||.|+.+.+.....+.. ....-+.....+++..+.
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~  322 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGC  322 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehh
Confidence            33578999999984  4567887888999887643  889999999998866655444443 334444457788888888


Q ss_pred             CHHHHHHHHHHHHHh
Q 029103          159 NVNELFYEIAKRLAE  173 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~  173 (199)
                      +++..-..+.....+
T Consensus       323 ~~d~~~~~v~~~a~~  337 (346)
T COG1084         323 GLDKLREEVRKTALE  337 (346)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            888877777766544

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=1.8e-16  Score=118.96  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCC-------------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQ-------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .+|+|+|++|+|||||+++|+...-. ...                   ....+.........+...+.++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999999852110 000                   0012333445555667778899999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      .|.......+..+|++|+|+|+++.... ....++.....   .+.|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            8887677778999999999999875322 22334433332   46889999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=1.4e-16  Score=127.97  Aligned_cols=149  Identities=16%  Similarity=0.129  Sum_probs=99.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC------CC--------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ------FF--------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|+++|++++|||||+++|+...      ..        ...+...+++.......+.....++.++|+||++.|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4568999999999999999999998521      00        011222344444444445555668899999999998


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHh---
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN---  145 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~---  145 (199)
                      .......+..+|++++|+|+.+... .+..+++..+...   ++| +++++||+|+.+..+..+   .+...+....   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            8777777789999999999886532 2334454444433   556 678899999865322111   1233333332   


Q ss_pred             --CCcEEEeccCCCCC
Q 029103          146 --GLSFLETSAKSAHN  159 (199)
Q Consensus       146 --~~~~~~~s~~~~~~  159 (199)
                        +++++++|+.++.+
T Consensus       234 ~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        234 GDDIPIISGSALLALE  249 (478)
T ss_pred             cCcceEEEEEcccccc
Confidence              46799999988753

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2.8e-16  Score=124.09  Aligned_cols=158  Identities=18%  Similarity=0.206  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..-|.++|+-..|||||++.+-+..........++......++..+. ....+.|+|||||+.|..++..-..-+|++||
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            45689999999999999999987776665555555555555555442 34578899999999999999888889999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC---------CcEEEeccCCCCC
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHN  159 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~  159 (199)
                      |++++|.- +.+..+.++..+   ..+.|++|++||+|.++..  ++....++ .++|         ..++++||++|+|
T Consensus        85 VVa~dDGv-~pQTiEAI~hak---~a~vP~iVAiNKiDk~~~n--p~~v~~el-~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          85 VVAADDGV-MPQTIEAINHAK---AAGVPIVVAINKIDKPEAN--PDKVKQEL-QEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEccCCc-chhHHHHHHHHH---HCCCCEEEEEecccCCCCC--HHHHHHHH-HHcCCCHhhcCCceEEEEeeccCCCC
Confidence            99998752 223233334443   4589999999999998432  22222222 2223         3589999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029103          160 VNELFYEIAKRLAEV  174 (199)
Q Consensus       160 v~~~~~~l~~~~~~~  174 (199)
                      +++++..|.-.....
T Consensus       158 i~eLL~~ill~aev~  172 (509)
T COG0532         158 IDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887766554

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=4.4e-16  Score=117.44  Aligned_cols=143  Identities=14%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----   74 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----   74 (199)
                      ..++|+++|.+|+|||||+|+|++..+...          ..++.........+..++..+++.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            478999999999999999999998765433          223333444455555567778999999999532211    


Q ss_pred             ----------------------ccccccc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           75 ----------------------LAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                                            .+...+.  .+|+++|+++.+.. .+... ...++.+.    ...|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                                  1112233  46777888876642 11111 23334443    2688999999999855


Q ss_pred             cc--cCCHHHHHHHHHHhCCcEEEeccCC
Q 029103          130 KR--KVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      ..  .............++++++......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            22  2234445677778899998877544

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=1.5e-16  Score=127.27  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=104.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--C---------------------------CCCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ..+.++|+++|+.++|||||+.+|+...-  .                           ...+...+++.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            35689999999999999999999875110  0                           001122334444455556677


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhCCCCc-eEEEEEeCCCCcc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF-------ERAKKWVQELQRQGNPNL-IMFLVANKVDLEE  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~  129 (199)
                      ...+.++|+|||++|.......+..+|++|+|+|+++. .+       .+..+.+......   ++ +++|++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCc
Confidence            78899999999999998888889999999999999863 22       2334443333332   44 4688899999762


Q ss_pred             ccc------CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 029103          130 KRK------VKNEEGELYAQENG-----LSFLETSAKSAHNVNE  162 (199)
Q Consensus       130 ~~~------~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      ...      ....+...+....+     ++++++|+++|+|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            110      01234455555555     6799999999999853

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=5.4e-16  Score=111.81  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccce---eEEEEEEEeCCeEEEEEEEeCCCccccccccc-----cccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA---AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP-----MYYR   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~-----~~~~   81 (199)
                      +++|+++|.+|+|||||+|+|.+...........+.   +........ .....+.+||+||.........     ..+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999985443222211111   111111111 1134688999999754322222     2256


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----C---CH-H---HHH-HH---HHHhC
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----V---KN-E---EGE-LY---AQENG  146 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~---~~-~---~~~-~~---~~~~~  146 (199)
                      .+|+++++.+. +..  ..-..|+..+...   +.|+++|+||+|+.....    .   .. .   +.. ..   ....+
T Consensus        80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78888887542 211  1223555555554   578999999999842111    0   01 1   111 11   11112


Q ss_pred             ---CcEEEeccC--CCCCHHHHHHHHHHHHHhh
Q 029103          147 ---LSFLETSAK--SAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       147 ---~~~~~~s~~--~~~~v~~~~~~l~~~~~~~  174 (199)
                         -++|.+|+.  .+.++..+.+.|+..+.+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence               368999998  4689999999999988764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=1.4e-16  Score=127.19  Aligned_cols=166  Identities=12%  Similarity=0.133  Sum_probs=106.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCC---CCCCcCccceeEEEE---------------EEEeCC-----------
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF---FDFQESTIGAAFFTQ---------------VLSLNE-----------   56 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~-----------   56 (199)
                      ..+..++|+++|+-..|||||+.+|.+...   .++..+.++.+.-..               ......           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            456799999999999999999999997432   111111111111000               000100           


Q ss_pred             -----eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           57 -----VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        57 -----~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                           ....+.++|+|||+.|...+...+..+|++++|+|+.++....+..+.+..+...  .-.++++++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence                 0246899999999998877777788999999999998642222333333333322  224688999999987532


Q ss_pred             cCCH--HHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          132 KVKN--EEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       132 ~~~~--~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ....  .+...+...   .+.+++++|+++|+|++.+++.|.+.+..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            2111  112222221   35789999999999999999998875543

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=4e-16  Score=126.84  Aligned_cols=117  Identities=17%  Similarity=0.228  Sum_probs=82.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh--CCCC--C----------------CCcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFF--D----------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~   67 (199)
                      ....+|+|+|++++|||||+++|+.  +...  .                ......+..+......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3467999999999999999999974  1110  0                001112333444455566667889999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      |+..|.......+..+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            9998887777788999999999999875322 22344443332   478899999999974

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.70  E-value=8.8e-17  Score=127.45  Aligned_cols=163  Identities=24%  Similarity=0.336  Sum_probs=117.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+++|..|+|||||+=+|....+.+...+....-...  ..+....+...+.|++..++-......-++.+|++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence            3458999999999999999999999888766544332211111  22334445578999986554444445567899999


Q ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHH-HHHHHHHhC-C-cEEEeccCCCCCH
Q 029103           87 VVVYDITSMDSFERAK-KWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEE-GELYAQENG-L-SFLETSAKSAHNV  160 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~~~~~v  160 (199)
                      .+||+++++++++.+. .|++.+.+..+  .++|+|+|+||+|..+......+. ...+...+. + .-++|||++-.++
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~  163 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV  163 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence            9999999999999995 89999988752  789999999999987655442222 333333322 1 2489999999999


Q ss_pred             HHHHHHHHHHH
Q 029103          161 NELFYEIAKRL  171 (199)
Q Consensus       161 ~~~~~~l~~~~  171 (199)
                      .++|..-...+
T Consensus       164 ~e~fYyaqKaV  174 (625)
T KOG1707|consen  164 SELFYYAQKAV  174 (625)
T ss_pred             Hhhhhhhhhee
Confidence            99998665554

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.70  E-value=2.2e-16  Score=115.25  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC--CCC--------------CcCccceeEEEEEEEeC--------CeEEEEEEEeCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQF--FDF--------------QESTIGAAFFTQVLSLN--------EVTIKFDIWDTA   67 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~v~l~d~~   67 (199)
                      +|+++|+.++|||||+++|....-  ...              .....++........+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986421  100              01111111111122222        347889999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      |+..|.......+..+|++++|+|+++....+. ...+.....   .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            999999888999999999999999987654433 233333332   357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.70  E-value=5.5e-16  Score=111.75  Aligned_cols=163  Identities=18%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------c---cccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---APMY   79 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~---~~~~   79 (199)
                      ++|+++|.+|+|||||+|+|++...........+.+...........+..+.++||||......        +   ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998754332221222222222222222345789999999654321        1   1122


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccC------CHHHHHHHHHHhCCcEEE
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKV------KNEEGELYAQENGLSFLE  151 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~  151 (199)
                      ..+.|++++|+++.+ .+.+. ...++.+.....  .-.++++++|+.|.......      .......+....+..|+.
T Consensus        81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            467899999999876 22222 233444433322  22468899999996543211      113345555666666666


Q ss_pred             ecc-----CCCCCHHHHHHHHHHHHHhhC
Q 029103          152 TSA-----KSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       152 ~s~-----~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ++.     .++.++.++++.|.+.+.+..
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            653     456779999999988888743

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.70  E-value=3.8e-16  Score=124.97  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=101.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhC--CCCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFD---------------------------FQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ..+.++|+++|+.++|||||+.+|+..  ....                           ..+...+.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            456899999999999999999998761  1110                           01112234444455556677


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc-
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLI-MFLVANKVDLEE-  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~-  129 (199)
                      ...+.|+|+|||.+|.......+..+|++++|+|+++..-      -.+..+.+..+...   ++| ++|++||.|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence            7889999999999998777777899999999999986421      12333444444333   444 678999999532 


Q ss_pred             -c--ccCC--HHHHHHHHHHh-----CCcEEEeccCCCCCHHH
Q 029103          130 -K--RKVK--NEEGELYAQEN-----GLSFLETSAKSAHNVNE  162 (199)
Q Consensus       130 -~--~~~~--~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~  162 (199)
                       .  ....  ..+...+....     +++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             1  1111  12222222222     36799999999999864

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=4.4e-16  Score=119.15  Aligned_cols=159  Identities=17%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEE---------------------eCC-eEEEEEEEeCCCc-
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLS---------------------LNE-VTIKFDIWDTAGQ-   69 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~v~l~d~~g~-   69 (199)
                      |+++|.|+||||||+++|++........+..+.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999998764322222211111111111                     112 3467999999997 


Q ss_pred             ---cccccccccc---ccCCCEEEEEEECCC---------------H-HHHHHH----HHH-HHH---------------
Q 029103           70 ---ERYHSLAPMY---YRGAAAAVVVYDITS---------------M-DSFERA----KKW-VQE---------------  107 (199)
Q Consensus        70 ---~~~~~~~~~~---~~~~d~~i~v~d~~~---------------~-~s~~~~----~~~-~~~---------------  107 (199)
                         +++..+...+   ++++|++++|+|+++               | ..++.+    ..| +..               
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               3444444443   899999999999973               1 011111    111 000               


Q ss_pred             -----------HH-------------Hh----------------------CCCCceEEEEEeCCCCcccccCCHHHHHHH
Q 029103          108 -----------LQ-------------RQ----------------------GNPNLIMFLVANKVDLEEKRKVKNEEGELY  141 (199)
Q Consensus       108 -----------~~-------------~~----------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  141 (199)
                                 +.             ..                      .....|+++++||.|+.+....   .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~---~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN---ISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH---HHHHH
Confidence                       00             00                      0234799999999997543221   11111


Q ss_pred             HHHhCCcEEEeccCCCCCHHHHHH-HHHHHHHhh
Q 029103          142 AQENGLSFLETSAKSAHNVNELFY-EIAKRLAEV  174 (199)
Q Consensus       142 ~~~~~~~~~~~s~~~~~~v~~~~~-~l~~~~~~~  174 (199)
                      .......++++||+.+.++.++.+ .+.+++.+.
T Consensus       238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            222356799999999999999998 688888664

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=5.9e-16  Score=116.06  Aligned_cols=163  Identities=19%  Similarity=0.170  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccccc---ccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMY---YRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~---~~~~d   84 (199)
                      -|.++|.|++|||||+++++..+.--...+..+.....-.+.. .....+.+-|+||.-+-.    .+-..|   +..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4679999999999999999986654322332222222223333 344468899999964322    222333   56678


Q ss_pred             EEEEEEECCCHH---HHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEE-eccCCCC
Q 029103           85 AAVVVYDITSMD---SFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE-TSAKSAH  158 (199)
Q Consensus        85 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~  158 (199)
                      ++++|+|++..+   ..+....+..++..+.  ..+.|.+||+||+|+....+........+....++.... +|+.+++
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999998543   3666666667776654  368889999999997654444445556666655654332 9999999


Q ss_pred             CHHHHHHHHHHHHHhhC
Q 029103          159 NVNELFYEIAKRLAEVN  175 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~  175 (199)
                      |++++...+.+.+....
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887764

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=3.6e-16  Score=126.02  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=97.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCC-----------C------------------cCccceeEEEEEEEeC
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF-----------Q------------------ESTIGAAFFTQVLSLN   55 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~~   55 (199)
                      ....++|+++|++++|||||+++|+...-  ...           .                  +...+++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35689999999999999999999985321  100           0                  0011223334444455


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN  135 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  135 (199)
                      ....++.++||||++.|.......+..+|++++|+|+.+.-. .+....+..+....  ..|+++++||+|+.+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHhC--CCceEEEEEeeccccchhHHH
Confidence            556789999999998887655556789999999999976421 11122222222221  246889999999874221111


Q ss_pred             HH----HHHHHHHh----CCcEEEeccCCCCCHHHH
Q 029103          136 EE----GELYAQEN----GLSFLETSAKSAHNVNEL  163 (199)
Q Consensus       136 ~~----~~~~~~~~----~~~~~~~s~~~~~~v~~~  163 (199)
                      .+    ...+....    ..+++++|+++|+|+.+.
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            11    11222222    367999999999998764

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=6.1e-16  Score=121.96  Aligned_cols=162  Identities=18%  Similarity=0.199  Sum_probs=117.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC--C-----------CCcCccceeEEEEEEEe---CCeEEEEEEEeCCCccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--D-----------FQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~~~~   73 (199)
                      -.++.|+-+-..|||||.++|+...-.  +           ..+..-+++....+...   ++..+.++++|||||..|.
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs  139 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS  139 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence            468899999999999999999873220  0           01122344444333333   3566999999999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHhCCcEEEe
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLET  152 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~  152 (199)
                      .....-+..++++++|+|++..-..+.+..++..+.    .+..+|.|+||+|++..+.. -..+...+....+.+.+.+
T Consensus       140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~v  215 (650)
T KOG0462|consen  140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYV  215 (650)
T ss_pred             ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEE
Confidence            888888899999999999987655566656655553    46668999999999865421 1222333334445579999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhC
Q 029103          153 SAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ||++|.|+.++|+.|++.+....
T Consensus       216 SAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  216 SAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             EeccCccHHHHHHHHHhhCCCCC
Confidence            99999999999999999887644

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=6.9e-17  Score=121.84  Aligned_cols=151  Identities=19%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCC----c--C----------ccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ----E--S----------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~--~----------~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      +|+++|++|+|||||+++|+........    .  .          ..+.........+......+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999753211000    0  0          0011122223334445578899999999888777


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEE--Eec
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFL--ETS  153 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~s  153 (199)
                      +..++..+|++++|+|.++....... ..+..+..   .+.|.++++||.|.....  .......+....+.+++  .+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            88889999999999999876443322 22333333   367899999999987542  22334445455555544  334


Q ss_pred             cCCCCCHHHHHHHHH
Q 029103          154 AKSAHNVNELFYEIA  168 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~  168 (199)
                      ..++.++..+.+.+.
T Consensus       155 ~~~~~~~~~~vd~~~  169 (268)
T cd04170         155 IGEGDDFKGVVDLLT  169 (268)
T ss_pred             ccCCCceeEEEEccc
Confidence            556555554444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=2.4e-16  Score=118.42  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC--CC--------------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      +|+++|++|+|||||+++|+...-  ..              ......+++.......+...+.++.++||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  00              01122244444445555556788999999999888888


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      +...+..+|++++|+|+.+...-. ...++..+..   .+.|+++++||.|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888999999999999998653222 2334444433   3678999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.7e-15  Score=117.76  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=121.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC---------------CCCCCcCccceeEEEEEEEe---CCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~   70 (199)
                      .-.+..|+-+-..|||||.++|+...               +.-+....+++.........   ++..+.++++|||||-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            35577899999999999999998721               11122333343333333333   4577999999999998


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc--
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS--  148 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--  148 (199)
                      .|.-.....+..|-+.++|+|++..-..+.+-..|..+.    .+.-++-|+||+|++...  .+.-..++..-.|++  
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid~~  161 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAAD--PERVKQEIEDIIGIDAS  161 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCC--HHHHHHHHHHHhCCCcc
Confidence            887666666788999999999997766667767766663    466689999999998754  355556666667764  


Q ss_pred             -EEEeccCCCCCHHHHHHHHHHHHHhhCCCC
Q 029103          149 -FLETSAKSAHNVNELFYEIAKRLAEVNPSR  178 (199)
Q Consensus       149 -~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~  178 (199)
                       .+.+|||+|.|++++++.|++.+.....+.
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~  192 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP  192 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence             799999999999999999999987655443

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=3.6e-16  Score=124.09  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC--CC-----------------------------CCcCccceeEEEEEEEeCCeEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQF--FD-----------------------------FQESTIGAAFFTQVLSLNEVTI   59 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (199)
                      ++|+++|+.++|||||+++|+...-  ..                             ..+...+++.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999974211  00                             0011122333444444555567


Q ss_pred             EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC----H
Q 029103           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N  135 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~  135 (199)
                      ++.++||||++.|.......+..+|++++|+|+.++.. .+..+.+..+....  ..++++++||+|+.+.....    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            89999999999887666667889999999999876422 12222222233221  34588899999986422110    1


Q ss_pred             HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103          136 EEGELYAQENG---LSFLETSAKSAHNVNE  162 (199)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      .+...+....+   ++++++|+++|+|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            11222233333   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.4e-16  Score=124.28  Aligned_cols=168  Identities=17%  Similarity=0.149  Sum_probs=115.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-cc--------ccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SL--------APM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~--------~~~   78 (199)
                      +..++|+|+|+|+||||||+|.|.+.. .....+..++++......++..++.+.|.||+|..+.. ..        ...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            457899999999999999999998543 44567888888888888888888999999999987622 11        133


Q ss_pred             cccCCCEEEEEEECC--CHHHHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCccc-ccCCHHHHHHHHHHh---C
Q 029103           79 YYRGAAAAVVVYDIT--SMDSFERAKKWVQELQRQG------NPNLIMFLVANKVDLEEK-RKVKNEEGELYAQEN---G  146 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~---~  146 (199)
                      .+..+|++++|+|+.  +-++-..+.+.+.....-.      ....+++++.||+|+... .+.... ...+....   .
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~  423 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV  423 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence            478899999999994  2222222223333332211      234788999999998754 222211 11111111   1


Q ss_pred             Cc-EEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          147 LS-FLETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       147 ~~-~~~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      .+ +.++|+.+++|++++.+.|...+......
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            23 45699999999999999999988776543

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.7e-16  Score=105.93  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.-|++++|--++|||||++.|...+........-++   ..  ...-.+.+++-+|.+||-.....|..++..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT---SE--~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SE--ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC---hH--HheecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            4568999999999999999999876544322211111   11  122345778899999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHH---HHHHHhC--------------CcEE
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE---LYAQENG--------------LSFL  150 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~--------------~~~~  150 (199)
                      .+|+.|.+.+.+.+..++.+.... ....|++|++||+|.+...  .+.+..   .+....+              +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999988887777655443 5789999999999987643  222211   1111111              2367


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029103          151 ETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      .+|...+.+..+.|.|+.+.+
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            888888888888888776543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=1.6e-15  Score=123.36  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh--CCCCC------------------CCcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD------------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~   67 (199)
                      ....+|+|+|++++|||||+++|+.  +....                  ......+..+......++....++.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999863  11100                  001122444555556667778899999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      |+..|.......+..+|++|+|+|.++.. ......++.....   .+.|+++++||+|+
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~  144 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDR  144 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccc
Confidence            99888876777889999999999998642 1222344443332   46889999999997

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=1.1e-15  Score=101.01  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------cccccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYR   81 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------~~~~~~~~   81 (199)
                      +|+|+|.+|+|||||+|+|++.... ....+..+..........++..  +.++||||.....         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999975432 1112222222222334445544  4699999964211         11223348


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (199)
                      .+|++++|+|..++.. +....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877422 23334444442    68899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=5.4e-16  Score=113.24  Aligned_cols=165  Identities=15%  Similarity=0.229  Sum_probs=108.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-------cccccccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YHSLAPMY   79 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-------~~~~~~~~   79 (199)
                      ...+++|+++|..|+|||||+|+|+.+...+...-..+.+........-+ .-.+.+||+||.++       |......+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            35689999999999999999999996554332222223332222222222 24688999999654       66677888


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH--------
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE--------  144 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~--------  144 (199)
                      +...|.++++.++.|+.---. .+++..+... ..+.++++++|.+|....       ........+.+..+        
T Consensus       115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCC-HHHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999988742111 2444444433 234789999999997432       11111111111111        


Q ss_pred             --hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          145 --NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       145 --~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                        .--|++.++...+.|++++...+++.+...
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence              124688888999999999999999988743

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1.1e-14  Score=108.63  Aligned_cols=155  Identities=19%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-------ccccccccC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG   82 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-------~~~~~~~~~   82 (199)
                      ..+|+++|+|+||||||++.|++........+..+.+  ..-..+...+.++++.|+||.-.-.       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~--~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE--PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc--cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            5689999999999999999999755432222222222  2222334556788999999964322       223456899


Q ss_pred             CCEEEEEEECCCHHH-HHHHHHHHHHHH---HhCCC--------------------------------------------
Q 029103           83 AAAAVVVYDITSMDS-FERAKKWVQELQ---RQGNP--------------------------------------------  114 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~---~~~~~--------------------------------------------  114 (199)
                      +|++++|+|+..+.+ .+.+.+.+...-   +...+                                            
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986544 444433222210   00000                                            


Q ss_pred             ------------------CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          115 ------------------NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       115 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                                        .+|.+++.||+|+..     .++...+.+..  .++++|++.+.|++++.+.|.+.+--
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                              288999999999865     22333333333  78999999999999999999998844

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=1.5e-15  Score=126.93  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=96.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCC-C-C-----------C------------------cCccceeEEEEEEEe
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-D-F-----------Q------------------ESTIGAAFFTQVLSL   54 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~-~-----------~------------------~~~~~~~~~~~~~~~   54 (199)
                      .....++|+++|++++|||||+++|+...-. . .           .                  +...+++.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            3455789999999999999999999863211 0 0           0                  000122233333444


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  134 (199)
                      .....++.++||||++.|.......+..+|++++|+|+.+... .+....+..+...  ...+++|++||+|+.+.....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEecccccchhHH
Confidence            4556678899999998886655566789999999999976422 1222222223222  235688999999986421110


Q ss_pred             H----HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103          135 N----EEGELYAQENG---LSFLETSAKSAHNVNE  162 (199)
Q Consensus       135 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      .    .+...+....+   .+++++|+++|+|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    11222333444   4589999999999874

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=1.4e-15  Score=128.25  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=83.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--CC------------cCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~   71 (199)
                      ....+|+|+|+.|+|||||+++|+.....  .  ..            ....+.+.......+......+++|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            45789999999999999999999853210  0  00            00112222222333444567899999999999


Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      |...+..++..+|++++|+|.++.........| ..+..   .+.|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            888888899999999999999876555443333 33333   3688999999999853

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=6.6e-15  Score=116.29  Aligned_cols=159  Identities=14%  Similarity=0.138  Sum_probs=113.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .+.-|-|+|+-..|||||++.|-+..........++..+-...+.+. .+-.++|.|||||..|..++..-..-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            45678999999999999999997766554444444444433444444 33678999999999999999888899999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhC--CcEEEeccCCCCCH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENG--LSFLETSAKSAHNV  160 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~s~~~~~~v  160 (199)
                      |+.+.|.- +.+..+.++   .-...+.|++|.+||+|.++..  .+....++..      .+|  ..++++||++|+|+
T Consensus       231 VVAadDGV-mpQT~EaIk---hAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  231 VVAADDGV-MPQTLEAIK---HAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEEccCCc-cHhHHHHHH---HHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            99988742 233333333   3335799999999999987533  2333333332      122  46899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029103          161 NELFYEIAKRLAEV  174 (199)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (199)
                      +.+-+.+.-+..-+
T Consensus       305 ~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  305 DLLEEAILLLAEVM  318 (683)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999887766443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.64  E-value=2.9e-16  Score=110.04  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=71.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccc---cccCCCE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPM---YYRGAAA   85 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~---~~~~~d~   85 (199)
                      .-.|+++|+.|+|||+|+..|..+...+...+... ..   ...+ ......+.++|+|||++.......   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            34789999999999999999999876665555421 11   1111 223446789999999887653333   4778999


Q ss_pred             EEEEEECCC-HHHHHHHH-HHHHHHHHh--CCCCceEEEEEeCCCCccc
Q 029103           86 AVVVYDITS-MDSFERAK-KWVQELQRQ--GNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        86 ~i~v~d~~~-~~s~~~~~-~~~~~~~~~--~~~~~p~ivv~nK~D~~~~  130 (199)
                      +|||+|.+. ...+..+- .+|..+...  ....+|++|+.||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999874 33444443 344443332  2578999999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09866 hypothetical protein; Provisional

Probab=99.62  E-value=1.4e-14  Score=117.49  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCcccc-----cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           59 IKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        59 ~~v~l~d~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      .++.|.||||....     .......+..+|++++|+|.....+... ....+.+... ..+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence            46889999997542     2223446899999999999986433222 2334444443 223589999999998643322


Q ss_pred             CHHHHHHHHH----HhC---CcEEEeccCCCCCHHHHHHHHHHH
Q 029103          134 KNEEGELYAQ----ENG---LSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       134 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      .......+..    ..+   ..+|++||+.|.|++++++.|...
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            2333333322    112   358999999999999999988763

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=1.3e-14  Score=122.23  Aligned_cols=118  Identities=17%  Similarity=0.111  Sum_probs=81.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--C------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--F------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ...-.+|+|+|++++|||||+++|+...-.  .  .            .....+++.......+...+.++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            345678999999999999999999752110  0  0            00122333333334444456789999999998


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .+...+...+..+|++++|+|+.+...... ...+..+..   .+.|.++++||+|+.
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~  138 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence            887778888999999999999987533222 233343433   367889999999985

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.62  E-value=6.5e-15  Score=124.08  Aligned_cols=123  Identities=17%  Similarity=0.090  Sum_probs=85.3

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--CC------------cCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~   67 (199)
                      ..+...-.+|+|+|++++|||||+++|+...-.  .  ..            ....+++.......+...+.++.+||||
T Consensus         4 ~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTP   83 (689)
T TIGR00484         4 TTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTP   83 (689)
T ss_pred             cCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECC
Confidence            344445679999999999999999999742110  0  00            0112334444444455556789999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      |+..+...+...+..+|++++|+|+.+....+. ..++..+..   .+.|+++++||+|+...
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            998887778888999999999999987543333 233333333   36789999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=8.1e-15  Score=112.57  Aligned_cols=155  Identities=19%  Similarity=0.196  Sum_probs=103.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC--C---------------------------CCCCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--F---------------------------FDFQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ..+.++++++|+..+|||||+-+|+-..  .                           ....+...+.+.......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            4568999999999999999999987611  0                           0011222355566666777777


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .+.+.++|+|||..|-..+-.-+..+|+.|+|+|+.+.+.      ..+.++..-..+.. + -..++|++||.|..+-+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-G-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-G-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-C-CceEEEEEEcccccccC
Confidence            7889999999999998888888889999999999987631      12222222222222 2 33468889999997622


Q ss_pred             cCCHHH----HHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 029103          132 KVKNEE----GELYAQENG-----LSFLETSAKSAHNVNEL  163 (199)
Q Consensus       132 ~~~~~~----~~~~~~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                      +...++    ...+.+..|     ++|+++|+..|+|+.+-
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            111111    222333333     56999999999987653

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=5e-14  Score=110.99  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---------------------N-EVTIKFDIWDTAG   68 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~v~l~d~~g   68 (199)
                      ++|+++|.|+||||||+++|++........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999987654322222222222211111                     1 2346789999999


Q ss_pred             cc----ccccccccc---ccCCCEEEEEEECC
Q 029103           69 QE----RYHSLAPMY---YRGAAAAVVVYDIT   93 (199)
Q Consensus        69 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   93 (199)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    233333444   88999999999996

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=6.1e-14  Score=118.22  Aligned_cols=119  Identities=16%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHh--CCCCCC--C------------cCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF--Q------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      +...-.+|+|+|++++|||||+++|+.  +.....  .            ....+++.......+...+.++.++||||+
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~   85 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH   85 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence            344567999999999999999999974  111000  0            012233444444444445678999999999


Q ss_pred             ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ..|.......+..+|++++|+|+...-..+. ...+..+...   +.|.++++||+|+.
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~  140 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCC
Confidence            8776666677889999999999876533333 3333444433   57789999999985

>TIGR00101 ureG urease accessory protein UreG

Probab=99.53  E-value=2.7e-13  Score=97.62  Aligned_cols=103  Identities=19%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  138 (199)
                      ....++++.|........+.   -++.+|.|+|+.+.+....  .+...+      ...-++++||+|+.+.........
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            45567788884322222221   2678999999987655322  111222      111389999999975322223333


Q ss_pred             HHHHH--HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          139 ELYAQ--ENGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       139 ~~~~~--~~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      ....+  ..+.+++++|+++|+|++++|++|.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            33333  34578999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd00066 G-alpha G protein alpha subunit

Probab=99.52  E-value=6.2e-13  Score=102.38  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=85.3

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ..+.+.+||++|+......|..++.+++++++|+|+++.          ..+.+....+..+.+.. ..+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            457788999999999999999999999999999999874          44555555555555543 3789999999999


Q ss_pred             CCcccc----------------cCCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          126 DLEEKR----------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      |+..+.                ......+..+...          ..+..+.++|.+..++..+|+.+.+.+.+.
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            963211                1122333222221          234457788888899999998888887764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=6.1e-14  Score=98.65  Aligned_cols=115  Identities=22%  Similarity=0.245  Sum_probs=76.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc---CCCEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---GAAAA   86 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~---~~d~~   86 (199)
                      .-.|+++|+.++|||+|+-.|..+.+...+.+..+-..   ......  -.+.++|.|||.+...-...++.   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a---~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA---TYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeecccee---eEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            45799999999999999999988765554444332222   111222  23789999999877655444554   78899


Q ss_pred             EEEEECCC-HHHHHHHHH-HHHHHHHh--CCCCceEEEEEeCCCCcc
Q 029103           87 VVVYDITS-MDSFERAKK-WVQELQRQ--GNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        87 i~v~d~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~D~~~  129 (199)
                      ++|+|... ..-...+-+ +|..+...  ....+|++|+.||.|+..
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            99999763 222344433 33333333  357889999999999853

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.52  E-value=1.5e-13  Score=100.15  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc--cceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cc---c
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST--IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LA---P   77 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~---~   77 (199)
                      ++|+|+|.+|+||||++|.+++........+.  .............+  ..+.++||||......        +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987655433222  22222333334444  5678999999532211        11   1


Q ss_pred             ccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------HHHHHHHHHHhCCcE
Q 029103           78 MYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------NEEGELYAQENGLSF  149 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~  149 (199)
                      ...++.++++||+.+.... .-.....++..+.... .-..++||+|..|......+.       ......+....+-.|
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~  157 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY  157 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence            2246789999999988321 1112222333322211 123478889998865543311       122445666778788


Q ss_pred             EEeccC------CCCCHHHHHHHHHHHHHhhCC
Q 029103          150 LETSAK------SAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       150 ~~~s~~------~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      ..++.+      +...+.++++.|-+.+.+...
T Consensus       158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            888876      235688999988888888653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12740 elongation factor G; Reviewed

Probab=99.51  E-value=2.4e-13  Score=114.58  Aligned_cols=109  Identities=18%  Similarity=0.132  Sum_probs=74.5

Q ss_pred             EcCCCCcHHHHHHHHHhCCCC--C--C------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103           16 LGDMGTGKTSLVLRFVKGQFF--D--F------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY   79 (199)
Q Consensus        16 ~G~~~~GKSsL~~~l~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~   79 (199)
                      +|++++|||||+++|....-.  .  .            .....+.+.......+...++.+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999642110  0  0            00012223333334444456789999999998887777888


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      +..+|++++|+|.++....... .++..+..   .+.|+++++||+|..
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            8999999999999876544433 33333332   367899999999975

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.51  E-value=6e-13  Score=114.72  Aligned_cols=145  Identities=21%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe----------------EEEEEEEeCCCcccccccccccccCCCE
Q 029103           22 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------------TIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus        22 GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +||||+++|-+..........++...-...+..+..                ...+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            499999999887665544444444433333333211                1138899999999998877777888999


Q ss_pred             EEEEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH------------H-HHHHH--------
Q 029103           86 AVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN------------E-EGELY--------  141 (199)
Q Consensus        86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------------~-~~~~~--------  141 (199)
                      +++|+|+++.   .+.+.    +..+..   .+.|+++++||+|+...+....            . ...++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~----I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEA----INILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHH----HHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999863   33333    233333   3678999999999864332110            0 01111        


Q ss_pred             --HHH---------------hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          142 --AQE---------------NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       142 --~~~---------------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                        ..+               ..++++++||++|+|+++++.+|......
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~  674 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK  674 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence              011               13578999999999999999988765443

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.49  E-value=6.4e-13  Score=103.46  Aligned_cols=168  Identities=15%  Similarity=0.172  Sum_probs=118.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL   75 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~   75 (199)
                      -.+|+|+-+...|||||++.|+.+.-.              +......++++-.+...+.+..+++++.|||||..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            358999999999999999999984321              111233466666666777778899999999999999999


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHH-------HhCC
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQ-------ENGL  147 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~-------~~~~  147 (199)
                      .+..+.-+|++++++|+.+. .+.+.+-.++....   .+.+.|||+||+|.++.+... ..+..++..       .++.
T Consensus        85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999999863 34444333333222   244469999999998654221 122233332       3457


Q ss_pred             cEEEeccCCC----------CCHHHHHHHHHHHHHhhCCCCCCC
Q 029103          148 SFLETSAKSA----------HNVNELFYEIAKRLAEVNPSRQTG  181 (199)
Q Consensus       148 ~~~~~s~~~~----------~~v~~~~~~l~~~~~~~~~~~~~~  181 (199)
                      +++..|+++|          +++.-+|+.|++++....-+....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~P  204 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEP  204 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCC
Confidence            8999999887          368889999999887755443333

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.3e-13  Score=101.47  Aligned_cols=177  Identities=17%  Similarity=0.186  Sum_probs=116.6

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCC---CCCCcCcccee------------------EEEEEEEeC----
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQF---FDFQESTIGAA------------------FFTQVLSLN----   55 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~---~~~~~~~~~~~------------------~~~~~~~~~----   55 (199)
                      |+.....+.+++|.++|+-..|||||..+|++--.   .++....+++.                  .+.....+.    
T Consensus         1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~   80 (415)
T COG5257           1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA   80 (415)
T ss_pred             CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence            55656668899999999999999999999998211   11111111110                  011111111    


Q ss_pred             --CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           56 --EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        56 --~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                        .....+.|.|.|||+-....+-+-..-.|++++|+.++.+-...+.++.+-.+.-..  -..++|+=||+|+.+.++-
T Consensus        81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A  158 (415)
T COG5257          81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA  158 (415)
T ss_pred             CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence              234568899999998766555555566799999999998755555555554443332  2337888899999764322


Q ss_pred             --CHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 029103          134 --KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ  179 (199)
Q Consensus       134 --~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~~  179 (199)
                        ...+.+.|.+.   -+.+++++||..+.|++-+++.|.+.+.....+..
T Consensus       159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~  209 (415)
T COG5257         159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD  209 (415)
T ss_pred             HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence              22334444442   35789999999999999999999998877654433

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=3.6e-13  Score=99.98  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=69.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----------cc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LA   76 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----------~~   76 (199)
                      ...+++|+|+|.+|||||||+|+|.+......... .+.+...........+..+.+|||||......          ..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            35689999999999999999999998654322111 11112122222223346789999999754421          01


Q ss_pred             ccccc--CCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCc
Q 029103           77 PMYYR--GAAAAVVVYDITSMD-SFERAKKWVQELQRQGN--PNLIMFLVANKVDLE  128 (199)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  128 (199)
                      ..++.  ..+++++|..++... ...+ ...++.+.....  .-.++++|+||+|..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            22332  567888887665321 1111 233333433222  124589999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=8.2e-13  Score=99.74  Aligned_cols=120  Identities=11%  Similarity=0.117  Sum_probs=68.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-------ccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYY   80 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-------~~~~~   80 (199)
                      ...++|+++|.+|+||||++|+|++....... ...+.+...........+.++.++||||.......       ...++
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            46899999999999999999999986532211 11111111111222224568999999997643211       11111


Q ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCc
Q 029103           81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLE  128 (199)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  128 (199)
                        ...|+++||..++.....+.-...++.+....+  .-.+.+|++|+.|..
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence              268999999665421111111223333333211  224589999999965

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=1.6e-13  Score=107.63  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cc---c-----cccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HS---L-----APMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~---~-----~~~~   79 (199)
                      ....++|+|.|+||||||+|.+......-  .+-..++.......++.....++++||||+-.. .+   .     ....
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvev--qpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEV--QPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhccccccccccc--CCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            46788999999999999999887655432  222222233333444566678999999996322 11   1     1122


Q ss_pred             ccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH---HHHHHHHhCCcEEEecc
Q 029103           80 YRGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE---GELYAQENGLSFLETSA  154 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~  154 (199)
                      ..--.+++|+.|++..  .|......++..++-. ..+.|+|+|+||+|+...+..+...   ...+....+++++.+|+
T Consensus       245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            2223588999999853  5666767788877665 5788999999999997666555544   34444555688999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q 029103          155 KSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .+.+|+.++-..-.+.+...
T Consensus       324 ~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             cchhceeeHHHHHHHHHHHH
Confidence            99999988877777666544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.47  E-value=1.4e-12  Score=100.20  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      ++.+.++||+|...-...   ....+|.++++.+...++.+...+.   .+...     .-++|+||.|+...... ...
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a-~~~  215 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAA-RRA  215 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHH-HHH
Confidence            467889999997633322   4667999999987555554544332   12111     13899999998653311 111


Q ss_pred             HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ..++...          +..+++.+|++++.|++++++.|.+++....
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~  263 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT  263 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            1122211          2257999999999999999999999876443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.46  E-value=2.5e-13  Score=114.92  Aligned_cols=117  Identities=22%  Similarity=0.213  Sum_probs=79.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC---------------CCC-CCcC--ccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFD-FQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~---------------~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ....+|+++|+.++|||||+++|+...               +.. +...  ++..........+.+..+++.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            346799999999999999999997521               000 0001  1111112223335677889999999999


Q ss_pred             ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ..|.......+..+|++++|+|+.+.-..+. ...+....   ..+.|.++++||+|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~---~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL---KENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH---HcCCCEEEEEEChhcc
Confidence            9888777888999999999999986422222 22222222   2356778999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00275 G_alpha G protein alpha subunit

Probab=99.45  E-value=2.3e-12  Score=100.01  Aligned_cols=118  Identities=14%  Similarity=0.222  Sum_probs=84.0

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ....+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+...++..+.+.. ..+.|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            345678999999999999999999999999999999963          34555556666665543 4789999999999


Q ss_pred             CCcccc---------------cCCHHHHHHHHH-----H------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          126 DLEEKR---------------KVKNEEGELYAQ-----E------NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       126 D~~~~~---------------~~~~~~~~~~~~-----~------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      |+....               ......+..+..     .      ..+..+.++|.+..++..+|+.+.+.+.+.
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            973211               012222222221     1      124457788888899999998888777664

Subunit of G proteins that contains the guanine nucleotide binding site

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.44  E-value=6.4e-12  Score=100.58  Aligned_cols=165  Identities=20%  Similarity=0.295  Sum_probs=117.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCC--
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGA--   83 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~d~~g~~~~~~~~~~~~~~~--   83 (199)
                      ..+-.|+|+|..++|||||+.+|.+..   ...++.+.+|....+.-+  +...++.+|...|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            346799999999999999999987532   344566777766655443  2345689999988777777766655543  


Q ss_pred             --CEEEEEEECCCHHHH-HHHHHHHHHHHH-------------------------hC-----C-----------------
Q 029103           84 --AAAVVVYDITSMDSF-ERAKKWVQELQR-------------------------QG-----N-----------------  113 (199)
Q Consensus        84 --d~~i~v~d~~~~~s~-~~~~~~~~~~~~-------------------------~~-----~-----------------  113 (199)
                        -++|+|+|.+.|..+ +.+..|+..+..                         +.     .                 
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence              388999999998653 566666544321                         00     0                 


Q ss_pred             ---------------CCceEEEEEeCCCCcccc----c-------CCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103          114 ---------------PNLIMFLVANKVDLEEKR----K-------VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus       114 ---------------~~~p~ivv~nK~D~~~~~----~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                                     -++|++||.+|+|.....    .       ....-.+.++..+|..++.+|++...+++-+..+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                           037999999999974311    1       11122577778899999999999999999999998


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+....
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            88887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.44  E-value=7.9e-13  Score=98.22  Aligned_cols=96  Identities=22%  Similarity=0.332  Sum_probs=77.9

Q ss_pred             ccccccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103           70 ERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (199)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (199)
                      +++..+.+.++.++|.+++|||++++. +++.+.+|+..+..   .++|+++|+||+|+.+...........+. ..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            667788888999999999999999887 88899899876643   57889999999999754443333344443 57889


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 029103          149 FLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ++.+|+++|+|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.43  E-value=9.5e-13  Score=87.66  Aligned_cols=114  Identities=32%  Similarity=0.421  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+++|..|+|||+|+.++....+..... ++.+                           +......+.+..+.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997666543222 2221                           222334566788999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      ++.++..+++.+  |...+......+.|.++++||.|+.+..+......        ..+++.|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999888765  77766655456788899999999854333333222        245677888988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.43  E-value=2.8e-12  Score=96.78  Aligned_cols=151  Identities=21%  Similarity=0.221  Sum_probs=104.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC-------------C-----C-------------CCcCccceeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-------------F-----D-------------FQESTIGAAFFTQVLSLNE   56 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~-------------~-----~-------------~~~~~~~~~~~~~~~~~~~   56 (199)
                      +..++.+-+|...-|||||+-+|+-..-             .     .             ..+..+++++......+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            4578999999999999999999887110             0     0             0112245666666666677


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                      .+.+|.+.|||||++|...+-.-..-+|+.|+++|+.. .-+++.++. ..+... ..-..+++.+||+|+.+-++-...
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRH-s~I~sL-LGIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRH-SFIASL-LGIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHH-HHHHHH-hCCcEEEEEEeeecccccCHHHHH
Confidence            77889999999999999888877888999999999853 233444332 222222 123447888999999864432222


Q ss_pred             ----HHHHHHHHhCC---cEEEeccCCCCCHH
Q 029103          137 ----EGELYAQENGL---SFLETSAKSAHNVN  161 (199)
Q Consensus       137 ----~~~~~~~~~~~---~~~~~s~~~~~~v~  161 (199)
                          +-..|+..+++   .++++||+.|+|+-
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                23555666664   48999999999864

>PRK13768 GTPase; Provisional

Probab=99.43  E-value=9.4e-13  Score=98.30  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             EEEEEeCCCcccc---cccccccccC-----CCEEEEEEECCCHHHH-HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           60 KFDIWDTAGQERY---HSLAPMYYRG-----AAAAVVVYDITSMDSF-ERA-KKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        60 ~v~l~d~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~-~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .+.+||+||+.++   ...+..+++.     .+++++++|....... +.. ..|+...... ..+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5789999997653   3333333222     8899999999643222 111 1222222211 24789999999999865


Q ss_pred             cccCCHHHH--H------------------------HHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          130 KRKVKNEEG--E------------------------LYAQENG--LSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       130 ~~~~~~~~~--~------------------------~~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ..+......  .                        ......+  .+++++|+++++|+++++++|.+.+.-
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            432211100  0                        0111223  578999999999999999999888743

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.41  E-value=3.8e-12  Score=92.46  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC------cCcccee--------EEEEEEEe------------------CC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIGAA--------FFTQVLSL------------------NE   56 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~------~~~~~~~--------~~~~~~~~------------------~~   56 (199)
                      ....|.++|++|+|||||++++.........      ......+        .......-                  ..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            3678899999999999999998863110000      0000000        00000000                  00


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                      ....+.++|+.|.-. ..  ..+....+..+.|+|+.+.+...  ... ...     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence            123566777777210 01  11112345556788876543211  111 111     23457999999999753322233


Q ss_pred             HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      ......+..  ..+++.+|+++++|++++|+++.++
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            333333333  3789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=6.5e-12  Score=98.24  Aligned_cols=86  Identities=19%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY   72 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~   72 (199)
                      ...++|+|+|.|+||||||+|+|.+........+..+.+.......+.+.               ..++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            35789999999999999999999876543333333333333333433322               235899999996422


Q ss_pred             cc----cc---cccccCCCEEEEEEECC
Q 029103           73 HS----LA---PMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        73 ~~----~~---~~~~~~~d~~i~v~d~~   93 (199)
                      ..    +.   -..++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            11    11   22467899999999974

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=4.6e-12  Score=98.10  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh--C--------------CCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK--G--------------QFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~--~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g   68 (199)
                      .+...+|+-+|.+|||||-..|+-  +              ...    -.....-++........++..+..++|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            456789999999999999998775  0              000    00122346666777777777788999999999


Q ss_pred             cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      |+.|.+-....+..+|..+.|+|+...-.-+. .+++...+   ..++|++-++||.|.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR  145 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDR  145 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeecccc
Confidence            99999999989999999999999986522222 33433332   368999999999995

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.41  E-value=1.5e-11  Score=98.17  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=122.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..-++..++|+.++|||.|++.+.+..+...+..+....+........+....+.+-|++-. ....+...- ..+|+++
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            34778899999999999999999998877755566666666666666677777888888754 222222222 7899999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~  166 (199)
                      ++||.+++.++..+...++.....  ...|+++|++|.|+.+..+.....-.+++++++++ .+.+|.+.... .++|..
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k  577 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK  577 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence            999999999999988777765444  78999999999999875544444448899999986 57777774333 889988


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |..+..-..
T Consensus       578 L~~~A~~Ph  586 (625)
T KOG1707|consen  578 LATMAQYPH  586 (625)
T ss_pred             HHHhhhCCC
Confidence            887775543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=6.4e-12  Score=94.75  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=93.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-------CCcCccceeEEEEEEEe-------CCeEEEEEEEeCCCccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-------FQESTIGAAFFTQVLSL-------NEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~v~l~d~~g~~~~~   73 (199)
                      ..++++.++|+-.+|||||.++|..-....       .....+..+.-...+.+       .+...++.++|+|||...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            446999999999999999999998733221       11222222222222222       3445789999999987654


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc-CC--HHHHHHHHHH-----
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK-VK--NEEGELYAQE-----  144 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~--~~~~~~~~~~-----  144 (199)
                      ...-...+-.|..++|+|+.....-+... -.+-++.   +  ...+||+||+|...+.+ ..  +...+...+.     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---C--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---c--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            44333445568889999998653222211 1111111   1  22577788888643211 11  1222222222     


Q ss_pred             --hCCcEEEeccCCC----CCHHHHHHHHHHHHHhh
Q 029103          145 --NGLSFLETSAKSA----HNVNELFYEIAKRLAEV  174 (199)
Q Consensus       145 --~~~~~~~~s~~~~----~~v~~~~~~l~~~~~~~  174 (199)
                        .+.|++++|+++|    +++.++.+.|...+.+.
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence              1378999999999    55666666555555443

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.41  E-value=8.7e-13  Score=85.12  Aligned_cols=136  Identities=23%  Similarity=0.224  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----ccccccccCCCEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMYYRGAAAAV   87 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~~~~~d~~i   87 (199)
                      ||+++|..|+|||||.+.|.+....  +..+..+++       ++..    .+||||.--..    .........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999875432  223332221       1111    46999943222    22234467899999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|-.++++++.-.. .    +...  -..|+|-+++|.|+.+..+  ....+.+..+-|. ++|.+|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f~p-~----f~~~--~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPP-G----FLDI--GVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCc-c----cccc--cccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999988543221 1    1111  2344888999999986333  4445555555564 5899999999999999988


Q ss_pred             HHH
Q 029103          167 IAK  169 (199)
Q Consensus       167 l~~  169 (199)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            764

>cd01882 BMS1 Bms1

Probab=99.40  E-value=7.5e-12  Score=92.00  Aligned_cols=140  Identities=15%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ......|+++|++|+|||||++.|.+...........+. +   .+ ......++.++|+||..  ..+ ......+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            345778999999999999999999864222111111111 1   11 12245678899999864  222 2345789999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCccccc-CCH--HHHH-HHHH--HhCCcEEEeccCCCC
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRK-VKN--EEGE-LYAQ--ENGLSFLETSAKSAH  158 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~~--~~~~-~~~~--~~~~~~~~~s~~~~~  158 (199)
                      ++++|.+....... ..++..+...   +.|. ++++||.|+.+... ...  .... .+..  ..+.+++.+||+++-
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999875433222 2344444333   4554 45999999864221 111  1111 1221  134689999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.4e-12  Score=104.21  Aligned_cols=161  Identities=21%  Similarity=0.230  Sum_probs=105.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc----ceeEEEEE--------E----EeCCeEEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI----GAAFFTQV--------L----SLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~----~~~~~~~~--------~----~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ...-++|+|+...|||-|++.+-+.+........+    +-+++...        +    .....-.-+.++|||||+.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            45668999999999999999998755543333322    22222211        0    00111223779999999999


Q ss_pred             cccccccccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-------------CCHH
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-------------VKNE  136 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~  136 (199)
                      ..+.......||++|+|+|+...   .+.+.    ++.++   ..+.|+||++||+|..-.+.             ....
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHH----HHHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            99999999999999999999743   22332    23333   35889999999999632110             0000


Q ss_pred             HHHHHHHH------------hC-------------CcEEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          137 EGELYAQE------------NG-------------LSFLETSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       137 ~~~~~~~~------------~~-------------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      ...+|...            +|             +.++++||..|+||.+++-+|+++....+-
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence            11111111            11             357899999999999999999998877653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.39  E-value=1.4e-11  Score=92.17  Aligned_cols=163  Identities=17%  Similarity=0.261  Sum_probs=116.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe--CCeEEEEEEEeCCCcccccccccccccCC---
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL--NEVTIKFDIWDTAGQERYHSLAPMYYRGA---   83 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~d~~g~~~~~~~~~~~~~~~---   83 (199)
                      ..-+|+|+|..|+|||||+.+|.+..   ......+..|....+.-  .+...++.+|-.-|..-+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            46689999999999999999997654   34455555554444433  23446788898888776666655544433   


Q ss_pred             -CEEEEEEECCCHH-HHHHHHHHHHHHHHhC----C--------------------------------------------
Q 029103           84 -AAAVVVYDITSMD-SFERAKKWVQELQRQG----N--------------------------------------------  113 (199)
Q Consensus        84 -d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~----~--------------------------------------------  113 (199)
                       -++|++.|+++|. .++.+++|...+.++.    .                                            
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             3789999999994 5688888877654211    0                                            


Q ss_pred             -------------CCceEEEEEeCCCCcc----cccC-------CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103          114 -------------PNLIMFLVANKVDLEE----KRKV-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       114 -------------~~~p~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                                   -++|++||.+|+|...    +.+.       -....+.||..+|...+.+|++...|++-+..+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                         0489999999999832    1111       122357788889999999999999999999999988


Q ss_pred             HHHhh
Q 029103          170 RLAEV  174 (199)
Q Consensus       170 ~~~~~  174 (199)
                      ...-.
T Consensus       288 r~yG~  292 (473)
T KOG3905|consen  288 RSYGF  292 (473)
T ss_pred             HhcCc
Confidence            87543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.38  E-value=6.1e-13  Score=97.23  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             EEEEEEEeCCCccc-cc-----ccccccccC--CCEEEEEEECCCH---HHH-HHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           58 TIKFDIWDTAGQER-YH-----SLAPMYYRG--AAAAVVVYDITSM---DSF-ERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        58 ~~~v~l~d~~g~~~-~~-----~~~~~~~~~--~d~~i~v~d~~~~---~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      .+...++||||+-+ |.     .+....+..  .-+++||+|....   .+| ..+.+....+   +....|+++++||.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~  191 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKT  191 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEecc
Confidence            35678999999642 21     122111222  2367778876432   222 2222222222   24689999999999


Q ss_pred             CCcccccCCH----H----HHHH---------H---------HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          126 DLEEKRKVKN----E----EGEL---------Y---------AQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       126 D~~~~~~~~~----~----~~~~---------~---------~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      |+.+.....+    .    ++..         +         .-..++..+.+|+.+|.|++++|..+-+.+.+....
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~  269 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE  269 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence            9864221110    0    0000         0         001246789999999999999999998887766544

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.37  E-value=3e-12  Score=89.43  Aligned_cols=151  Identities=20%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc-----------------ceeEEEEEE------------------Ee
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-----------------GAAFFTQVL------------------SL   54 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~------------------~~   54 (199)
                      -+.|.|.|++|||||+|+.+++..--.......+                 +......+.                  ..
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4899999999999999999987622111000001                 111000000                  00


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  134 (199)
                      .+....+.|++..|. --  ..-++.-..+.-|+|+|++..+-..  ++-.+.+.      ..-++|+||.|+......+
T Consensus        93 ~~~~~Dll~iEs~GN-L~--~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~d  161 (202)
T COG0378          93 DFPDLDLLFIESVGN-LV--CPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGAD  161 (202)
T ss_pred             cCCcCCEEEEecCcc-ee--cccCcchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCcc
Confidence            111134556666661 10  1111112233889999998653211  11111111      1348999999998766665


Q ss_pred             HHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          135 NEEGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       135 ~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      .+.....+++.  +.+++++|.++|+|++++++|+....
T Consensus       162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            56666666654  57899999999999999999987654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.36  E-value=2.4e-12  Score=110.62  Aligned_cols=117  Identities=16%  Similarity=0.131  Sum_probs=79.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--------------CCcCccceeEEEEEEEe--------------CCe
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--------------FQESTIGAAFFTQVLSL--------------NEV   57 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~~   57 (199)
                      ..-.+|+|+|+.++|||||+++|+...-.  .              +.....++......+..              ...
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            44679999999999999999999863310  0              00111111111111111              223


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .+.++++|||||..|.......+..+|++|+|+|+.++-..... ..+..+.   ..+.|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHH---HCCCCEEEEEECCccc
Confidence            67889999999999988888888999999999999876433332 3333333   3478899999999986

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.6e-11  Score=98.04  Aligned_cols=155  Identities=20%  Similarity=0.260  Sum_probs=105.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh--------------------CCC---------CCCCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK--------------------GQF---------FDFQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~   57 (199)
                      +...+..+++|+..+|||||+.+|+-                    +..         ....++..+++-......++..
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            34689999999999999999999876                    100         1112333455566666777777


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SF---ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ...++|.|+|||..|...+-.-...+|+.++|+|++-..   .|   .+.++....++...  -..++|++||.|+.+=.
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS  331 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence            788999999999999888888888999999999998431   11   23334444444443  34478889999987522


Q ss_pred             cCCHHH----HHHHH-HHhC-----CcEEEeccCCCCCHHHH
Q 029103          132 KVKNEE----GELYA-QENG-----LSFLETSAKSAHNVNEL  163 (199)
Q Consensus       132 ~~~~~~----~~~~~-~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                      +.-.++    ...|. ...|     +.++++|+..|+|+...
T Consensus       332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            221222    12222 3333     46999999999986544

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=7.5e-12  Score=106.29  Aligned_cols=116  Identities=18%  Similarity=0.147  Sum_probs=76.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC--------------cCccceeEEE--EEEEeCCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ--------------ESTIGAAFFT--QVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~--------------~~~~~~~~~~--~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .-.+|+++|+.++|||||+++|+...-  ....              ...+++....  ...........+.|+||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            456899999999999999999985321  1000              0011111111  111224457889999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .|.......+..+|++++|+|+...-..+. ...+......   +.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence            888777888899999999999886532222 2233332222   45678999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.35  E-value=2.9e-11  Score=93.68  Aligned_cols=83  Identities=18%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc--
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH--   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~--   73 (199)
                      ++|+++|.|+||||||+|+|++........+..+.+.......+.+.               ..++.++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987643333333333333334444332               1358999999964321  


Q ss_pred             --ccc---cccccCCCEEEEEEECC
Q 029103           74 --SLA---PMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        74 --~~~---~~~~~~~d~~i~v~d~~   93 (199)
                        .+.   -..++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              111   12367899999999984

>PTZ00416 elongation factor 2; Provisional

Probab=99.34  E-value=4.2e-12  Score=108.96  Aligned_cols=117  Identities=17%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC------------cCccceeEEE--EEEEeC--------CeEEEEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ------------ESTIGAAFFT--QVLSLN--------EVTIKFDI   63 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~------------~~~~~~~~~~--~~~~~~--------~~~~~v~l   63 (199)
                      ....+|+++|+.++|||||+++|+...-  ....            +...+++...  ..+...        .....+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            3456999999999999999999986221  0000            0001111111  112221        22577999


Q ss_pred             EeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      +||||+..|.......+..+|++|+|+|+.+.-.... ...+..+..   .+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999999888777888899999999999987533222 334444433   357899999999986

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.31  E-value=1.8e-11  Score=94.84  Aligned_cols=158  Identities=17%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccce--eEEEEEEEeCCeEEEEEEEeCCCcccccccccc-----ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-----YYR   81 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~-----~~~   81 (199)
                      ..++|+|+|.+|+|||||+|+|-|-...+......+.  +..............+.+||.||..-.......     -+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            5789999999999999999999763322211111111  111111111122235889999997543322222     256


Q ss_pred             CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc--cc-----ccCCHH----HHHHHHHH----h
Q 029103           82 GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE--EK-----RKVKNE----EGELYAQE----N  145 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~-----~~~~~~----~~~~~~~~----~  145 (199)
                      ..|.+|++.+-    .+... ..+...+...   +.|+++|-||+|..  +.     ....+.    +.++.+..    .
T Consensus       114 ~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  114 RYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             G-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             ccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            67888877762    23222 2444555554   77899999999961  11     111111    11222211    1


Q ss_pred             C---CcEEEeccCCC--CCHHHHHHHHHHHHHh
Q 029103          146 G---LSFLETSAKSA--HNVNELFYEIAKRLAE  173 (199)
Q Consensus       146 ~---~~~~~~s~~~~--~~v~~~~~~l~~~~~~  173 (199)
                      +   -++|.+|..+-  .++..+.+.|...+..
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            2   35899998874  4577777777766654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.30  E-value=2.4e-10  Score=88.95  Aligned_cols=157  Identities=16%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC----CCCC----------CCcCccc---eeEE--------EEEEEeCCeEEEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG----QFFD----------FQESTIG---AAFF--------TQVLSLNEVTIKFDI   63 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~----~~~~----------~~~~~~~---~~~~--------~~~~~~~~~~~~v~l   63 (199)
                      -++-|+|+|+.++|||||+|++.+.    ...+          ...+..+   ++..        ......++....+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3688999999999999999999986    2221          1122233   1111        112222455678999


Q ss_pred             EeCCCccccccc-----------------------------cccccc-CCCEEEEEE-ECC-----CHHHHHHHHHHHHH
Q 029103           64 WDTAGQERYHSL-----------------------------APMYYR-GAAAAVVVY-DIT-----SMDSFERAKKWVQE  107 (199)
Q Consensus        64 ~d~~g~~~~~~~-----------------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~  107 (199)
                      +||+|......+                             ....+. .+++.++|. |.+     .....+.-.+++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999994321110                             122344 788888888 764     11222333567777


Q ss_pred             HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC--CCCHHHHHHHHHHH
Q 029103          108 LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEIAKR  170 (199)
Q Consensus       108 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~~~~l~~~  170 (199)
                      +++.   ++|+++++|+.|.....  .......+...++.+++.+|+.+  .+.+..+++.+...
T Consensus       176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            7654   88999999999943222  34445666777889988888654  34565655554433

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.27  E-value=1.6e-11  Score=87.71  Aligned_cols=157  Identities=18%  Similarity=0.315  Sum_probs=92.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccc-----cccccccCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHS-----LAPMYYRGA   83 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~-----~~~~~~~~~   83 (199)
                      .-||+++|.+|+||||+--.+..+.. .......+-++....-.... ++..+.+||++|++.+-+     .....+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            45899999999999998655553321 11122222222222222222 346789999999885432     345678999


Q ss_pred             CEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHH----HHHHHHhCCcEEEecc
Q 029103           84 AAAVVVYDITSMDS---FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEG----ELYAQENGLSFLETSA  154 (199)
Q Consensus        84 d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~----~~~~~~~~~~~~~~s~  154 (199)
                      +++++|||+...+-   ++..++.++.+.+. .|...+.+..+|.|+.....  ....+.    ..+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999987643   33444555555554 46666788899999964332  112222    2222234456778877


Q ss_pred             CCCCCHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAK  169 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~  169 (199)
                      .+ +.+=+.|..+..
T Consensus       162 wD-etl~KAWS~iv~  175 (295)
T KOG3886|consen  162 WD-ETLYKAWSSIVY  175 (295)
T ss_pred             hh-HHHHHHHHHHHH
Confidence            66 333333443333

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.26  E-value=1.6e-12  Score=96.04  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=56.1

Q ss_pred             EEEEEeCCCcccccccccccc--------cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      ...++||||+.+....+....        ...-++++++|..-... ...+-.++..+.....-+.|.+.++||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            577999999977654443322        33447788888763221 222222232222222348899999999999752


Q ss_pred             ccCC--------------------HHHHHHHHHH---hC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 029103          131 RKVK--------------------NEEGELYAQE---NG-L-SFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       131 ~~~~--------------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      . ..                    ......++..   .+ . .++++|+.+++|+.+++..|-+.+
T Consensus       172 ~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 Y-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             H-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             h-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            2 00                    0001111111   12 3 699999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=8.3e-11  Score=98.16  Aligned_cols=125  Identities=22%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCcCccceeEEEEEEEeCCe-EEEEEE
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF----------------DFQESTIGAAFFTQVLSLNEV-TIKFDI   63 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~v~l   63 (199)
                      |++......-.+|.|+|+-++|||||.++|+-..-.                .......+++.......+.+. .+.+++
T Consensus         1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl   80 (697)
T COG0480           1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL   80 (697)
T ss_pred             CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence            555555667889999999999999999998862110                001122355556666666666 499999


Q ss_pred             EeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      +|||||-.|.......++-+|++++|+|+.+.-..+.-..|.+..    ..+.|.++++||.|...
T Consensus        81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence            999999999988888899999999999998764334434444333    35788999999999764

>cd01900 YchF YchF subfamily

Probab=99.26  E-value=6.2e-11  Score=88.97  Aligned_cols=81  Identities=15%  Similarity=0.072  Sum_probs=53.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc----
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH----   73 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~----   73 (199)
                      |+++|.|+||||||+|+|++........+..+.+.......+.+.               ..++.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987654333344433444434444332               2358999999964221    


Q ss_pred             cccc---ccccCCCEEEEEEECC
Q 029103           74 SLAP---MYYRGAAAAVVVYDIT   93 (199)
Q Consensus        74 ~~~~---~~~~~~d~~i~v~d~~   93 (199)
                      .+..   ..++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1111   2357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.26  E-value=8e-11  Score=90.18  Aligned_cols=105  Identities=21%  Similarity=0.071  Sum_probs=64.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      .+.+.|+||+|.....   ...+..+|.++++.....   -+.+..+...+     ...|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678899999854222   224566788887754332   33333333333     245579999999987533211100


Q ss_pred             H------HHHHH---HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          138 G------ELYAQ---ENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       138 ~------~~~~~---~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      .      ..+..   .+..+++++|++++.|+++++++|.+....
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~  239 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTF  239 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            0      11111   123468999999999999999999987553

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.24  E-value=1.7e-10  Score=87.25  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----------cCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-----   73 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-----   73 (199)
                      ..++|+|+|.+|+|||||+|.|++.......          ..+..+........-++..+.+.++||||.....     
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4789999999999999999999985543321          1222333344445557788999999999932110     


Q ss_pred             --------------------cccc--ccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           74 --------------------SLAP--MYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        74 --------------------~~~~--~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                                          ...+  ..=...|+.+|.++.+... +..+ ...++.+    ....++|-|+.|.|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL----SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh----cccccEEeEEecccccCH
Confidence                                0011  1123457899999976421 2111 2344444    456778999999998653


Q ss_pred             ccCC--HHHHHHHHHHhCCcEEEeccC
Q 029103          131 RKVK--NEEGELYAQENGLSFLETSAK  155 (199)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      .+..  ..........+++.+|.....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S------
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccccc
Confidence            3322  222344445677777664433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.24  E-value=9.9e-11  Score=86.99  Aligned_cols=107  Identities=20%  Similarity=0.118  Sum_probs=69.0

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      ++.+.+++|.|..+....   ...-+|.+++|.-..-.+..+.++.=+-++.        -++++||.|......--...
T Consensus       143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l  211 (323)
T COG1703         143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAAREL  211 (323)
T ss_pred             CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHH
Confidence            456888899886443322   3345888888887666666666654444442        38899999965432111111


Q ss_pred             HHHHHH--------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          138 GELYAQ--------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       138 ~~~~~~--------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ...+..        .+.-+++.+|+..|+|++++|+.|.++..-..
T Consensus       212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~  257 (323)
T COG1703         212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT  257 (323)
T ss_pred             HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence            111111        12357999999999999999999999886543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.24  E-value=1.1e-10  Score=89.41  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ....+.++|.+|+.....-|..+|.+++++|+|+++++-          ..+.+...+++.+.+.. ..+.++++++||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            346788999999999999999999999999999999853          22444445666666554 4789999999999


Q ss_pred             CCcccc---------------cCCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          126 DLEEKR---------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       126 D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      |+.++.               .....++..+...          ..+.+..+.|.+..+|+.+|+.+.+.+...
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            983211               1223333333221          124456778889999999999988888664

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.3e-10  Score=90.36  Aligned_cols=158  Identities=18%  Similarity=0.128  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      -|+-.|+-..|||||+..+.+.... .......+++..............+.|+|.||++++-...-..+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5788999999999999999875433 112333444444444444444558899999999988877777777899999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH--HHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA--QENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      +.++.-. .+..+.+..+....  ...-+|++||.|..+...........+.  ...+.+++.+|+++|+|++++-+.|.
T Consensus        82 ~~deGl~-~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~  158 (447)
T COG3276          82 AADEGLM-AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELI  158 (447)
T ss_pred             eCccCcc-hhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHH
Confidence            9865421 22233334343332  2225899999999865433222211111  13356789999999999999999999


Q ss_pred             HHHH
Q 029103          169 KRLA  172 (199)
Q Consensus       169 ~~~~  172 (199)
                      +...
T Consensus       159 ~L~~  162 (447)
T COG3276         159 DLLE  162 (447)
T ss_pred             Hhhh
Confidence            9885

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.21  E-value=1.1e-11  Score=90.69  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC----------------------CCCCCcCcc----ceeEEEEEEEeCC------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ----------------------FFDFQESTI----GAAFFTQVLSLNE------   56 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~----------------------~~~~~~~~~----~~~~~~~~~~~~~------   56 (199)
                      ....|.|.|+||+|||||++.|...-                      +........    ....+.+-..-.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            46799999999999999999987611                      000000000    0011222221111      


Q ss_pred             ------------eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103           57 ------------VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        57 ------------~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (199)
                                  .++.+.+++|.|......   ....-+|.+++|....-.+..+.++.-+-++.        -++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence                        145577888877432221   23456899999999876666666554333332        3899999


Q ss_pred             CCCcccccCCHHHHHHHH--H----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          125 VDLEEKRKVKNEEGELYA--Q----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~--~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .|.......-......+.  .    .+..+++.+||.++.|++++++.|.++....
T Consensus       177 aD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            996543322111111111  1    1235899999999999999999998876443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.4e-10  Score=83.53  Aligned_cols=165  Identities=22%  Similarity=0.302  Sum_probs=104.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc---ccccccCCCEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---APMYYRGAAAA   86 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~---~~~~~~~~d~~   86 (199)
                      ..+|+++|...+||||+-+.....-.+.+.-....+.... .-.+....+.+.+||.||+..+...   ....++++-++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~-~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKIT-RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCccc-HhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            4569999999999999988766433222111111111111 1112335677899999998766543   35568999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccc-------CCHHHHHHHHH----HhCCcEEEec
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRK-------VKNEEGELYAQ----ENGLSFLETS  153 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~----~~~~~~~~~s  153 (199)
                      ++|+|+.+ +.++.+.++...+..-.  ++++.+-|.+.|+|..+...       +......+++.    ...+.|+.+|
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99999876 34566655555554432  58888889999999754221       11111222222    1234678888


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      ..+ .++-|.|..+.+.+..+.|-
T Consensus       185 IyD-HSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  185 IYD-HSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             ecc-hHHHHHHHHHHHHHhhhchh
Confidence            776 67889999999888877654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.20  E-value=2.1e-10  Score=80.52  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             EEEEeCCCccc----ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           61 FDIWDTAGQER----YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        61 v~l~d~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      +.|+|+||...    +...+..++..+|++|+|.+.+....-.....+.......   ...+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            77999999743    3355677889999999999998765444444444433322   33388888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.19  E-value=2.7e-11  Score=90.63  Aligned_cols=158  Identities=19%  Similarity=0.143  Sum_probs=102.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--ccccccc------ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--RYHSLAP------MYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--~~~~~~~------~~~   80 (199)
                      ...-|.++|-.++|||||+++|.+....+...-..+.+..........+ ..+.+.||-|.-  -...+..      .-.
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            4567899999999999999999976554433333333333333333333 357789999942  1112211      125


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE----EEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF----LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i----vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      ..+|.++.|.|++.|+.-.+....+..+.+..-+..|.+    =|-||+|..+...-.        .+++  -+.+|+++
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------ccCC--cccccccc
Confidence            789999999999999876665566666666654444433    345777764321110        0122  58899999


Q ss_pred             CCCHHHHHHHHHHHHHhhCCC
Q 029103          157 AHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      |+|+.++.+.+-..+......
T Consensus       326 gdgl~el~~a~~~kv~~~t~~  346 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVASETTV  346 (410)
T ss_pred             CccHHHHHHHHHHHhhhhhee
Confidence            999999999998888765433

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.19  E-value=3.7e-10  Score=92.56  Aligned_cols=120  Identities=11%  Similarity=0.129  Sum_probs=70.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE-EEEEEeCCeEEEEEEEeCCCcccccc-------c---c
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQERYHS-------L---A   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~l~d~~g~~~~~~-------~---~   76 (199)
                      ...++|+|+|.+|+||||++|+|++...........+++.. ......  .+..+.++||||......       +   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence            45789999999999999999999987543322221222222 111222  246789999999764321       1   1


Q ss_pred             ccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcc
Q 029103           77 PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEE  129 (199)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~  129 (199)
                      ..++.  ..|++++|..++.......-..++..+....+  .-..+||++|+.|...
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            11323  57999999887532221111234444433322  1233799999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=2e-10  Score=85.04  Aligned_cols=171  Identities=15%  Similarity=0.179  Sum_probs=107.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC----------C---C-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----------F---F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~----------~---~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|..+|+-..|||||..++..--          +   . .......++++......+.-.....-..|+|||..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            3579999999999999999998877610          0   0 111223344444444445555556778899999999


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHhCC-
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENGL-  147 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~-  147 (199)
                      -..+-.-..+.|+.|+|+.++|. .+.+.++.+...++.   +.| +++++||+|+.+..+.   -+.+..++..+++. 
T Consensus        89 vKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~  164 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP  164 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence            87777777889999999999874 244444444444443   443 5677899999864332   23445666667764 


Q ss_pred             ----cEEEeccCC-CCC---HHHHHHHHHHHHHhhCCCCCCC
Q 029103          148 ----SFLETSAKS-AHN---VNELFYEIAKRLAEVNPSRQTG  181 (199)
Q Consensus       148 ----~~~~~s~~~-~~~---v~~~~~~l~~~~~~~~~~~~~~  181 (199)
                          |++.-|+.. .+|   ..+-+..|.+.+-...|.+.+.
T Consensus       165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~  206 (394)
T COG0050         165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD  206 (394)
T ss_pred             CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence                567777654 233   3333334444444444444443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.15  E-value=5.5e-09  Score=75.97  Aligned_cols=155  Identities=19%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRG   82 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~   82 (199)
                      ..+|+++|.|.+|||||+-.+...............+.....+.+++  -.+++.|.||+-+-.+       ..-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            67899999999999999998876443322222222233333344444  4577999999643322       22345678


Q ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHh---CCC--------------------------------------------
Q 029103           83 AAAAVVVYDITSMDSFERA-KKWVQELQRQ---GNP--------------------------------------------  114 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~---~~~--------------------------------------------  114 (199)
                      +|.++.|.|++..+....+ .+.+..+--.   ..+                                            
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999976544322 2222222100   011                                            


Q ss_pred             ------------------CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          115 ------------------NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       115 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                                        ..+.+.|-||+|.     ++.++...+++..+.  +.+|+.-.-|++.+++.|++.+.-
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L  289 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNL  289 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhce
Confidence                              1556677788874     446666777777665  566777778999999999988754

>smart00053 DYNc Dynamin, GTPase

Probab=99.14  E-value=5e-10  Score=82.52  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=42.4

Q ss_pred             EEEEEEeCCCcccc-------------ccccccccc-CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103           59 IKFDIWDTAGQERY-------------HSLAPMYYR-GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        59 ~~v~l~d~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (199)
                      ..+.++|+||....             ..+...|+. ..+++++|+|+...-.-.....+...+.   ..+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            45889999997421             123445666 4458899998764322222223333332   357789999999


Q ss_pred             CCCcc
Q 029103          125 VDLEE  129 (199)
Q Consensus       125 ~D~~~  129 (199)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.14  E-value=2.5e-10  Score=85.78  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=38.4

Q ss_pred             ceEEEEEeCCCCcccccCCHHHHHHHHHH--hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          116 LIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       116 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      .+-++|+||+|+.+.............+.  .+.+++.+|+++|+|++++++||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            33599999999965322122223333333  35789999999999999999999774

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=4.5e-10  Score=91.22  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-----------------CccceeEEEEEEEe---CCeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------STIGAAFFTQVLSL---NEVTIKFDIWDTA   67 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~v~l~d~~   67 (199)
                      ..-.+|+++|+-++|||+|++.|.....+....                 ...++.....+..+   .+..+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            457899999999999999999998754432211                 11111122222222   4566779999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      ||..|.......++.+|++++|+|+.+.-.+.. .++++...   ..+.|+++|+||+|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence            999998888888999999999999987654444 23333332   357889999999996

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=8.3e-09  Score=79.28  Aligned_cols=85  Identities=16%  Similarity=0.093  Sum_probs=57.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe----------------CCeEEEEEEEeCCCccc--
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL----------------NEVTIKFDIWDTAGQER--   71 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~l~d~~g~~~--   71 (199)
                      .++++|+|.|+||||||+|+++.........|..+++.......+                .-....+.++|++|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987644344444444332222222                12345688999998532  


Q ss_pred             --cccccccc---ccCCCEEEEEEECCC
Q 029103           72 --YHSLAPMY---YRGAAAAVVVYDITS   94 (199)
Q Consensus        72 --~~~~~~~~---~~~~d~~i~v~d~~~   94 (199)
                        -..+-..|   ++++|+++.|++..+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              22333333   688999999999873

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.07  E-value=5.8e-09  Score=79.72  Aligned_cols=139  Identities=14%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---c
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---S   74 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---~   74 (199)
                      ...++|+++|+.|.|||||+|.|++......          ..++..+......+.-++..+.++++||||...+-   .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4589999999999999999999998643322          12334445555566667888999999999943211   1


Q ss_pred             cc----------------------cc-c--ccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           75 LA----------------------PM-Y--YRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        75 ~~----------------------~~-~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .|                      +. .  =..+++.+|.+..+. +.+..+ ...+..+...    ..+|-|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~~----vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSKR----VNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhcc----cCeeeeeeccccC
Confidence            11                      11 1  133578888887663 333333 3555555443    3367788899986


Q ss_pred             ccccC--CHHHHHHHHHHhCCcEEE
Q 029103          129 EKRKV--KNEEGELYAQENGLSFLE  151 (199)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~~  151 (199)
                      ...+.  -..........+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            53322  223345556678888885

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.06  E-value=2.4e-09  Score=85.00  Aligned_cols=114  Identities=16%  Similarity=0.221  Sum_probs=78.5

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ....+.++|++|+.....-|..++.+++++|||+++++-          ..+.+...++..+.... ..+.|+++++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            445678999999999999999999999999999998742          23444455555555543 3689999999999


Q ss_pred             CCccc----------------cc--CCHHHHHHHHHH------------hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          126 DLEEK----------------RK--VKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       126 D~~~~----------------~~--~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |+..+                ..  .....+..+...            ..+.+..++|.+.+.+..+|+.+.+-
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            97320                01  223334333322            12245688888888888888887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.05  E-value=7.7e-10  Score=88.08  Aligned_cols=161  Identities=23%  Similarity=0.393  Sum_probs=118.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      -+++|+.|+|..++|||+|+++++.+.+.....+.  -..+..++..++....+.+.|.+|...     ..|-..+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            46899999999999999999999988877644432  235566666777777888888888432     34567799999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc--cccCCHHHH-HHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE--KRKVKNEEG-ELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +||.+-+..+++.+..+...+..+.. ..+|++.++++.-...  .+.+.+.++ ...++...+.||+.++-.|-++..+
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            99999999999998877766654433 5667777776654322  223333444 4444445688999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |+.+...+....
T Consensus       181 f~~~~~k~i~~~  192 (749)
T KOG0705|consen  181 FQEVAQKIVQLR  192 (749)
T ss_pred             HHHHHHHHHHHH
Confidence            999988886653

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.5e-08  Score=78.01  Aligned_cols=145  Identities=13%  Similarity=0.201  Sum_probs=89.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-----   73 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-----   73 (199)
                      ...++++++|.+|.|||||+|.|+...+...         ...+..+......+.-++..+.++++||||....-     
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            4579999999999999999999998643321         12233444445555557788899999999932110     


Q ss_pred             --------------------cccccccc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           74 --------------------SLAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        74 --------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                                          .+.+..+.  .+++.+|.+..+. ..+..+ ...+..+.    ....+|-|+-|.|....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTK  173 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeeccccCCH
Confidence                                11222233  5678888888663 223332 24444443    34456777889998653


Q ss_pred             ccCC--HHHHHHHHHHhCCcEEEeccCCC
Q 029103          131 RKVK--NEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+..  ..........+++++|.......
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            3322  23345555667888777665544

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=7.1e-09  Score=78.38  Aligned_cols=173  Identities=16%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh----------CCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK----------GQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ..+.++|.-+|+-..|||||--++..          ..+.    ...+...++++....+-+.-.....--.|+|||..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            45799999999999999999887765          0111    111233345555555555544555667899999999


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHhC---
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENG---  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~---  146 (199)
                      -..+-.-..+-|+.|+|+.++|. .+.+.++.+...++..-  ..++|.+||.|+.+..   +.-+.+.+++..+++   
T Consensus       131 IKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            87777777788999999999984 36666666666555533  3367788999997432   223344566666665   


Q ss_pred             --CcEEEeccC---CCCC---HHHHHHHHHHHHHhhCCCCCCCC
Q 029103          147 --LSFLETSAK---SAHN---VNELFYEIAKRLAEVNPSRQTGM  182 (199)
Q Consensus       147 --~~~~~~s~~---~~~~---v~~~~~~l~~~~~~~~~~~~~~~  182 (199)
                        +|++.-||+   .|.+   =.+....|++.+-..-|.+.+..
T Consensus       208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~  251 (449)
T KOG0460|consen  208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDL  251 (449)
T ss_pred             CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccccc
Confidence              467777755   3422   12334455555555555544443

>cd01855 YqeH YqeH

Probab=98.96  E-value=3.8e-09  Score=75.76  Aligned_cols=94  Identities=28%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhC
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENG  146 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  146 (199)
                      +...+..+++.+|++++|+|++++..     .|...+... ..+.|+++|+||+|+..... .......+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            45667788999999999999987531     122222222 34678999999999865332 222233332     2233


Q ss_pred             C---cEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          147 L---SFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       147 ~---~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      .   .++.+|+++++|++++++.|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999999998774

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.93  E-value=2.3e-09  Score=74.42  Aligned_cols=94  Identities=18%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEec
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      .+++....++|++++|+|++++..... ..+...+.   ..+.|+++++||+|+.+....  .....+....+.+++.+|
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence            345566778999999999987643222 12222222   236789999999998543211  111123334567899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 029103          154 AKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ++++.|++++++.|.+.+..
T Consensus        78 a~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          78 AKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             ccccccHHHHHHHHHHHHhh
Confidence            99999999999999887753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.93  E-value=7.2e-09  Score=80.69  Aligned_cols=92  Identities=15%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             ccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEe
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                      .+....+.++|.+++|+|+.++. ....+.+|+....   ..++|+++|+||+|+.+..+.  .........+++.++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            44455689999999999998765 3345556665543   357889999999999643221  12223334678899999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++.|++++++.|...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999888654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.91  E-value=3.9e-09  Score=72.06  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      +++++|.+|+|||||+|+|.+..... .....+.+.......++.   .+.+|||||..
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence            89999999999999999999766442 333344555555555543   46899999963

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.90  E-value=8.4e-09  Score=78.57  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             cccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103           77 PMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      ...+.++|.+++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+.+..+  ...........+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34588999999999999887 77777778776654   3678999999999965321  122233344578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029103          156 SAHNVNELFYEIAK  169 (199)
Q Consensus       156 ~~~~v~~~~~~l~~  169 (199)
                      ++.|+++++..|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.87  E-value=7.6e-09  Score=72.83  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ..++|+++|.|++|||||+|+|.+..... .....+++.........   ..+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~---~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLD---KKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence            35899999999999999999999765432 34445555555554443   25789999994

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.87  E-value=6.2e-08  Score=70.10  Aligned_cols=155  Identities=14%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---c
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---S   74 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---~   74 (199)
                      ...+++|+|+|.+|.|||||+|.|........         ...+..+......+.-.+...+++++||||....-   .
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            35689999999999999999999987543321         11112222233333346677889999999943211   1


Q ss_pred             c-----------------------ccccccC--CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           75 L-----------------------APMYYRG--AAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        75 ~-----------------------~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .                       .+..++.  ++..+|.+..+ ..++..+ ..+++.+.+.    ..++-|+-|.|-.
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v----vNvvPVIakaDtl  197 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV----VNVVPVIAKADTL  197 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh----heeeeeEeecccc
Confidence            1                       1222332  34556666555 3444433 2444444333    2367777799965


Q ss_pred             ccccCC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103          129 EKRKVK--NEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus       129 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ..++..  .+....-...+++.+|+-.+.+.+.=+..++.
T Consensus       198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            322111  12233333457888888777775554444443

>cd01858 NGP_1 NGP-1

Probab=98.87  E-value=9.1e-09  Score=71.51  Aligned_cols=57  Identities=18%  Similarity=0.247  Sum_probs=38.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ..++|+++|.||||||||+|+|.+..... .....+.+.....+....   .+.++||||.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence            36789999999999999999998754322 233344444444444332   3669999994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.84  E-value=1.4e-08  Score=77.74  Aligned_cols=86  Identities=22%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             cccCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+.++|.+++|+|+.++..... +.+|+..+..   .++|+++|+||+|+.+..+ ............+.+++.+|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3589999999999988765433 3566665543   4788999999999963222 122233444566889999999999


Q ss_pred             CCHHHHHHHHH
Q 029103          158 HNVNELFYEIA  168 (199)
Q Consensus       158 ~~v~~~~~~l~  168 (199)
                      +|++++++.|.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.80  E-value=4.1e-08  Score=76.45  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ..++|.+++|++.....++..+..|+....   ..++|.++|+||+|+.+.... ............+.+++.+|+++++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            467999999999987778888888877553   246788999999999653211 1122223344568899999999999


Q ss_pred             CHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKR  170 (199)
Q Consensus       159 ~v~~~~~~l~~~  170 (199)
                      |++++++.|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.79  E-value=7.6e-09  Score=71.37  Aligned_cols=60  Identities=23%  Similarity=0.270  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      -.++++|++|||||||+|.|.+....      ........++.....+.+....   .++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            46799999999999999999985321      1112223333444555554433   488999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.78  E-value=4e-08  Score=75.56  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=97.4

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC--------------cCccceeEEEEEEEeCCe------------
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------------ESTIGAAFFTQVLSLNEV------------   57 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------------   57 (199)
                      +...+.++.|.++|+-+.|||||+-.|..+...+-.              .+..+-+......-+++.            
T Consensus       111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence            344567999999999999999999888775543221              111222223333333222            


Q ss_pred             ---------EEEEEEEeCCCccccccc--ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           58 ---------TIKFDIWDTAGQERYHSL--APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        58 ---------~~~v~l~d~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                               ..-+.|.|+.||+.|-..  .-.+-.+.|..++++.++|.- ....++.+-.+..   -..|++++.||+|
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~-~~~tkEHLgi~~a---~~lPviVvvTK~D  266 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV-TKMTKEHLGIALA---MELPVIVVVTKID  266 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc-chhhhHhhhhhhh---hcCCEEEEEEecc
Confidence                     124779999999987543  233457789999999988752 2222444444433   3788999999999


Q ss_pred             CcccccCCH--HHHHHH----------------------HHHh---CCcEEEeccCCCCCHHHHHH
Q 029103          127 LEEKRKVKN--EEGELY----------------------AQEN---GLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       127 ~~~~~~~~~--~~~~~~----------------------~~~~---~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +........  ++...+                      +.+.   -.|++.+|+.+|+|++-+.+
T Consensus       267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            964322111  111111                      1111   14789999999999865443

>cd01855 YqeH YqeH

Probab=98.77  E-value=1.7e-08  Score=72.31  Aligned_cols=57  Identities=18%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC-------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ..+++++|.+|+|||||+|+|.+....       .......+++.....+.+..   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            458999999999999999999975431       12334445666666665543   4689999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=4.6e-08  Score=74.92  Aligned_cols=120  Identities=18%  Similarity=0.286  Sum_probs=81.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCe-------------------------------
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEV-------------------------------   57 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------------   57 (199)
                      ..=|+++|.=..||||+++.|+.+.++.... +..+++++...+.-+..                               
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            3458999999999999999999988775443 33333443333221110                               


Q ss_pred             --------EEEEEEEeCCCccc-----------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceE
Q 029103           58 --------TIKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM  118 (199)
Q Consensus        58 --------~~~v~l~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~  118 (199)
                              .-.+.++||||.-+           |....+.|...+|.++++||...-+--++....+..++.+   .--+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---ccee
Confidence                    11488999999532           2344567889999999999987655555656666666544   3346


Q ss_pred             EEEEeCCCCccccc
Q 029103          119 FLVANKVDLEEKRK  132 (199)
Q Consensus       119 ivv~nK~D~~~~~~  132 (199)
                      =||+||.|..+..+
T Consensus       215 RVVLNKADqVdtqq  228 (532)
T KOG1954|consen  215 RVVLNKADQVDTQQ  228 (532)
T ss_pred             EEEeccccccCHHH
Confidence            78999999876443

>cd01856 YlqF YlqF

Probab=98.72  E-value=4.6e-08  Score=68.93  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ..++++++|.+|+|||||+++|.+.... ......+++.......+.   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999976653 223333444444444443   35789999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.71  E-value=5.3e-08  Score=76.50  Aligned_cols=95  Identities=29%  Similarity=0.331  Sum_probs=67.9

Q ss_pred             cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH----HHHHH
Q 029103           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE----LYAQE  144 (199)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~  144 (199)
                      .+.|..+...+...++++++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+.... .......    .+.+.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            4567777788888999999999997653     23444444432 367899999999986532 2222222    34556


Q ss_pred             hCC---cEEEeccCCCCCHHHHHHHHHHH
Q 029103          145 NGL---SFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       145 ~~~---~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.70  E-value=1e-07  Score=69.75  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=93.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRG   82 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~   82 (199)
                      ..++.++|.|.+|||||+..|.+. +.+ ..+..+.+............-++++.|.||+-+-..       ..-...+-
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~-~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGT-FSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCC-CCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            358999999999999999998753 222 222233333333333334456788999999643321       22334677


Q ss_pred             CCEEEEEEECCCHHHHHHHHH-HHH----------------------------------------HHHHh----------
Q 029103           83 AAAAVVVYDITSMDSFERAKK-WVQ----------------------------------------ELQRQ----------  111 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~-~~~----------------------------------------~~~~~----------  111 (199)
                      ++.+++|.|+..|-+-..+-+ .++                                        +.+.+          
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da  216 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA  216 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence            899999999987644333321 111                                        10000          


Q ss_pred             ---------CC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          112 ---------GN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       112 ---------~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                               ..  ...|.+.++||+|...-++.+        -.+.+ ..+++|+.++.+++++++.+.+.+.-
T Consensus       217 T~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd--------ii~~iphavpISA~~~wn~d~lL~~mweyL~L  282 (358)
T KOG1487|consen  217 TADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD--------IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKL  282 (358)
T ss_pred             chhhhhhhhccCceeeeeeeeecccceeeeeccc--------eeeeccceeecccccccchHHHHHHHhhcchh
Confidence                     00  026667777787754322211        11222 35899999999999999999887743

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=8.8e-08  Score=73.54  Aligned_cols=150  Identities=17%  Similarity=0.248  Sum_probs=90.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc------------------C-----ccceeEEEEEEEe----------C
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE------------------S-----TIGAAFFTQVLSL----------N   55 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~------------------~-----~~~~~~~~~~~~~----------~   55 (199)
                      .+++++++|.-.+|||||+-.|..+...+-..                  +     ..+++-.....++          +
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            59999999999999999998876633221110                  1     1111111112222          1


Q ss_pred             CeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      ....-+.++|.+|+.+|....-..+.  ..|..++|++++..-.. ..++.+-.+...   ++|+.|+++|.|+.+..- 
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~-  320 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL---NIPFFVLVTKMDLVDRQG-  320 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh---CCCeEEEEEeeccccchh-
Confidence            12334889999999999865543332  24677888887754322 224444445444   789999999999965321 


Q ss_pred             CHHHHHHHHH-----------------------------HhCCcEEEeccCCCCCHHHH
Q 029103          134 KNEEGELYAQ-----------------------------ENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus       134 ~~~~~~~~~~-----------------------------~~~~~~~~~s~~~~~~v~~~  163 (199)
                      .....++++.                             ..-.|+|.+|..+|+|++-+
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            1122222221                             12247899999999997644

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.69  E-value=7e-08  Score=73.21  Aligned_cols=58  Identities=19%  Similarity=0.292  Sum_probs=41.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ..++++++|.||+|||||+|+|.+..... .....+++.....+....   .+.++||||..
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~~  174 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGIL  174 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCcc
Confidence            46899999999999999999999765332 233344454444444432   46899999973

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=9.1e-08  Score=66.47  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      ..+..+|++++|+|+.++..-. ...+...+... ..+.|+++|+||+|+.+.... ......+...+....+.+|++++
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence            3467899999999998863221 12222333322 345889999999998643221 11222332223333578999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 029103          158 HNVNELFYEIAKRLA  172 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~  172 (199)
                      .|++++++.|.+.+.
T Consensus        81 ~~~~~L~~~l~~~~~   95 (157)
T cd01858          81 FGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            999999999977653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.68  E-value=9.3e-08  Score=72.92  Aligned_cols=58  Identities=19%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ..++|+++|.||||||||+|+|.+..... .....+++.....+..+.   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            46899999999999999999999765432 234455555554444432   47799999974

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=4.3e-07  Score=73.30  Aligned_cols=153  Identities=13%  Similarity=0.158  Sum_probs=89.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+++-|+|+||||.|||||++.|...- .......    ...-...+.+...++++.++|..-  .. +-...+-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk~ti~~----i~GPiTvvsgK~RRiTflEcp~Dl--~~-miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TKQTIDE----IRGPITVVSGKTRRITFLECPSDL--HQ-MIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHH-HHhhhhc----cCCceEEeecceeEEEEEeChHHH--HH-HHhHHHhhheeE
Confidence            467888999999999999999988632 1111110    111122356777889999999431  11 223456689999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-----HHHH-HhCCcEEEeccC-CCCCH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-----LYAQ-ENGLSFLETSAK-SAHNV  160 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~-~~~~~~~~~s~~-~~~~v  160 (199)
                      +.+|.+=.-.++. .++++.+..++.+.  ++-|+|+.|+...........+     .+.. ..|+.+|.+|.. +|.--
T Consensus       139 LlIdgnfGfEMET-mEFLnil~~HGmPr--vlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYp  215 (1077)
T COG5192         139 LLIDGNFGFEMET-MEFLNILISHGMPR--VLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYP  215 (1077)
T ss_pred             EEeccccCceehH-HHHHHHHhhcCCCc--eEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCC
Confidence            9999875443444 35666666664443  6778899998642211111111     1111 135778888855 44433


Q ss_pred             HHHHHHHHHHH
Q 029103          161 NELFYEIAKRL  171 (199)
Q Consensus       161 ~~~~~~l~~~~  171 (199)
                      +.-+-.|.+.+
T Consensus       216 DreilnLsRfi  226 (1077)
T COG5192         216 DREILNLSRFI  226 (1077)
T ss_pred             CHHHHHHHHHH
Confidence            33333444444

>PRK12288 GTPase RsgA; Reviewed

Probab=98.66  E-value=6.1e-08  Score=75.50  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      .++++|.+|||||||+|+|.+......      ......++.....+.+.+..   .++||||..++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            378999999999999999997532211      11112234444445554333   389999987654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.66  E-value=2.9e-06  Score=66.58  Aligned_cols=154  Identities=16%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEE----------EEEEe-CCeEEEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFT----------QVLSL-NEVTIKFDIW   64 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~v~l~   64 (199)
                      .+=|+|+||..+|||||++++...-.              .+...+..+.+...          ..+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            57789999999999999999988111              01111222222222          22333 5678899999


Q ss_pred             eCCCcc--------ccc------cccc---------------cccc--CCCEEEEEEECC----CHHHH-HHHHHHHHHH
Q 029103           65 DTAGQE--------RYH------SLAP---------------MYYR--GAAAAVVVYDIT----SMDSF-ERAKKWVQEL  108 (199)
Q Consensus        65 d~~g~~--------~~~------~~~~---------------~~~~--~~d~~i~v~d~~----~~~s~-~~~~~~~~~~  108 (199)
                      |+.|..        +-.      ..|.               ..+.  ..-++++.-|.+    .++.+ +.-.+...++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            999821        100      1111               1111  123666666655    12333 2223555555


Q ss_pred             HHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC--CCCHHHHHHHHH
Q 029103          109 QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEIA  168 (199)
Q Consensus       109 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~~~~l~  168 (199)
                      +..   ++|++|++|-.+--+  .-....+..+..+++.+++++++.+  .+.+..++..+.
T Consensus       177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            544   888999999988433  2346777888899999999998764  334555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01859 MJ1464 MJ1464

Probab=98.66  E-value=1.1e-07  Score=65.86  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ...+++++|.+|+|||||++++.+... ....+..+.+........+.   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            457889999999999999999986442 22344455444333333322   5889999994

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.65  E-value=1.4e-07  Score=73.51  Aligned_cols=83  Identities=13%  Similarity=-0.042  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc-
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~-   73 (199)
                      ++++|+|.|++|||||++.|++... .....+..+.+.....+.+.+.               ...+.+.|+||...-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765 3333333323333333444332               2467899999964322 


Q ss_pred             ---ccc---cccccCCCEEEEEEECC
Q 029103           74 ---SLA---PMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        74 ---~~~---~~~~~~~d~~i~v~d~~   93 (199)
                         .+.   -..++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence               122   23478899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.65  E-value=7.4e-08  Score=74.47  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ..++++++|-|+||||||+|+|.+... ....+.++++.....+..+..   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            458899999999999999999997654 334555677777777766654   6799999964

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.64  E-value=4.4e-08  Score=72.26  Aligned_cols=157  Identities=19%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC-ccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL   75 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~   75 (199)
                      .+....++++|.+++|||||+|.+..........+ ..+.   ...++.-..+..+.+.|.||..          .+...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~---Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK---TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc---ceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence            34578999999999999999999987554322222 3333   3333333444567799999921          12233


Q ss_pred             ccccccCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----CCHHHHHH-------H
Q 029103           76 APMYYRGAA---AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----VKNEEGEL-------Y  141 (199)
Q Consensus        76 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~-------~  141 (199)
                      ...|+.+-+   -+++.+|++.+  ++..-.  ..+......+.|+.+|+||+|......    -....+..       .
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            344444333   33455555533  111111  111222236899999999999743111    11111111       1


Q ss_pred             HHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          142 AQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       142 ~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      ......+.+.+|+.++.|+++++-.|.+.
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhhh
Confidence            11223466789999999998887665543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.64  E-value=6.2e-07  Score=65.94  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=66.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeC---CeEEEEEEEeCCCccccccc------c
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL------A   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~l~d~~g~~~~~~~------~   76 (199)
                      ..-.-|.|+|++++|||+|+|.|.+.  .+.-.. .....+...+.....   +....+.++||+|.......      .
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~-~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD-TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC-CCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            34567899999999999999999987  443211 111222222222221   23568999999997543221      1


Q ss_pred             cccccC--CCEEEEEEECCCH-HHHHHHHHHHHHH---------HHhCCCCceEEEEEeCCCCc
Q 029103           77 PMYYRG--AAAAVVVYDITSM-DSFERAKKWVQEL---------QRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        77 ~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~~---------~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ...+..  ++.+||..+.... ..++.+....+..         .........+++++...++.
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~  147 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD  147 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence            222333  7888887776533 3334433333211         11223445567777666553

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.64  E-value=5.5e-08  Score=73.14  Aligned_cols=59  Identities=22%  Similarity=0.235  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC------CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      ..+++|.+|||||||+|+|....      ..+.......+++....+.++..++   ++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            56899999999999999998632      2233334556667777777754443   88999987654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.7e-07  Score=77.57  Aligned_cols=115  Identities=23%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC------------CC--CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF------------FD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      .-.-+|.++.+-..|||||++.|...+-            -+  ....+.+++-...-+..-...+.++++|+|||..|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            3467899999999999999999987331            11  112223333333444444567889999999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      +.......-+|++++.+|+...-.-+....+.+.+.    .+...++|+||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence            998888899999999999987644333332223232    2344689999999

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.60  E-value=1.4e-07  Score=65.43  Aligned_cols=57  Identities=19%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ...+++++|.||+|||||+|+|.+..... .....+++.........   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence            46889999999999999999999754322 22223333333333332   35789999994

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.60  E-value=3.2e-07  Score=63.57  Aligned_cols=85  Identities=14%  Similarity=0.054  Sum_probs=55.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+..+.. .....+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988754432  12221 11123578999999999985432211 1112233334566899999999999999


Q ss_pred             HHHHHHHHH
Q 029103          164 FYEIAKRLA  172 (199)
Q Consensus       164 ~~~l~~~~~  172 (199)
                      ++.|.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            999877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.59  E-value=1.3e-07  Score=84.46  Aligned_cols=113  Identities=20%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCC----cCcccee-EEEEEEEeCCeEEEEEEEeCCCcc--------ccccccccc
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAA-FFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY   79 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~   79 (199)
                      -+|+|++|+|||||+..- +..++-..    ....+.. ...+...+.+   +..++|++|.-        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            489999999999999874 43332211    0000000 0112222222   35589999932        112234333


Q ss_pred             ---------ccCCCEEEEEEECCCH-----H----HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           80 ---------YRGAAAAVVVYDITSM-----D----SFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        80 ---------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                               -+..|++|+++|+.+-     +    ....++..+.++........|++|++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence                     3568999999998743     1    124556666777777788999999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.58  E-value=2.8e-07  Score=69.86  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC---------------eEEEEEEEeCCCcccc-
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQERY-   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~l~d~~g~~~~-   72 (199)
                      ..++|.|+|.|+||||||+|+|..........+..+++.....+.+.+               ....++++|++|.-.- 
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            578999999999999999999998777666666655555444444422               2456899999985322 


Q ss_pred             ---ccccc---ccccCCCEEEEEEECCC
Q 029103           73 ---HSLAP---MYYRGAAAAVVVYDITS   94 (199)
Q Consensus        73 ---~~~~~---~~~~~~d~~i~v~d~~~   94 (199)
                         ..+-.   +.++.+|+++-|+++.+
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence               22322   33688999999988763

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=1.4e-06  Score=63.65  Aligned_cols=159  Identities=17%  Similarity=0.226  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCC--cHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103           11 VKLVLLGDMGT--GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus        11 ~~i~v~G~~~~--GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+|-+|+  ||.+|+.+|....+.....+...+.++.+++.-....-.+.+.-.+--+++.-..........+++.
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            45789999999  9999999998877777777777777777776433222222222222212222111222345678999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc--------------c------------------------
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE--------------K------------------------  130 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------~------------------------  130 (199)
                      |||++....+..++.|+....-...  -..+.++||+|...              .                        
T Consensus        85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            9999999899999999875321111  11356679998521              0                        


Q ss_pred             ----cc--CCHHHHHHHHHHhCCcEEEeccCCC------------CCHHHHHHHHHHHH
Q 029103          131 ----RK--VKNEEGELYAQENGLSFLETSAKSA------------HNVNELFYEIAKRL  171 (199)
Q Consensus       131 ----~~--~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~~~~l~~~~  171 (199)
                          ..  .......+++.++++.+++.++.+.            .|+..+|+.|...+
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                00  1122346677788899999888543            37888888876554

>PRK12289 GTPase RsgA; Reviewed

Probab=98.56  E-value=1.5e-07  Score=73.41  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=37.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      .++|+|++|||||||+|+|.+......      ......++.....+.+.+..   .++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            379999999999999999996432211      11112244455555554333   58999997643

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=9.5e-08  Score=71.49  Aligned_cols=169  Identities=14%  Similarity=0.133  Sum_probs=100.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeE-------------------------------EEEE-
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAF-------------------------------FTQV-   51 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~-------------------------------~~~~-   51 (199)
                      ++-.++|.-+|+...||||+++++++-.   |-.+.+..+.+..                               .... 
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            3458999999999999999999998721   1111111111110                               0000 


Q ss_pred             EEeCC---eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           52 LSLNE---VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        52 ~~~~~---~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ..+.+   -...+.|.|+|||+.....+-+-..-.|++++.+..+++-...+..+.+..+.-.  .-..++++-||+|+.
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli  192 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence            00010   1235889999999877655554455568888888777542222222322222211  122378888999997


Q ss_pred             ccccCC--HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          129 EKRKVK--NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       129 ~~~~~~--~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      .+++-.  .+....|.+.   .+.+++++||.-..+++-+.++|...+.....+
T Consensus       193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence            544321  1222333332   357899999999999999999888887665443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.55  E-value=2.1e-07  Score=69.30  Aligned_cols=59  Identities=19%  Similarity=0.156  Sum_probs=37.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      -.++++|.+|||||||+|+|.+......      ......+++....+.+.+.    .++||||...+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            3679999999999999999997532211      1112224444444545332    589999976543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.54  E-value=8.2e-08  Score=73.95  Aligned_cols=142  Identities=18%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC----------CCc-----------CccceeEEEEEEE-------------eC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----------FQE-----------STIGAAFFTQVLS-------------LN   55 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~~   55 (199)
                      .-.|+++|++|+||||++..|...-...          .+.           ...+..+......             ..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999887621100          000           0001111110000             01


Q ss_pred             CeEEEEEEEeCCCccccccc----ccc--------cccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEE
Q 029103           56 EVTIKFDIWDTAGQERYHSL----APM--------YYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVA  122 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~  122 (199)
                      ...+.+.++||||.......    ...        .-...+..++|+|++.. +.+.....+.    +.   -.+.-+|+
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~---~~~~giIl  266 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EA---VGLTGIIL  266 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hh---CCCCEEEE
Confidence            23457899999996432211    111        11346788999999853 2233322221    11   12347899


Q ss_pred             eCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103          123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus       123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ||.|....    .=.+.......++|+..++  +|++++++-
T Consensus       267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            99995432    1123344456689988888  777776653

>cd01856 YlqF YlqF

Probab=98.49  E-value=3.1e-07  Score=64.70  Aligned_cols=91  Identities=23%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEec
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      ......+.++|.+++|+|+.++..... ..+...+     .+.|+++|+||+|+.+....  .....+....+..++.+|
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            344567889999999999987643221 1122211     34688999999998643211  111122233345689999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 029103          154 AKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~  172 (199)
                      ++++.|++++.+.|...+.
T Consensus        83 a~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.49  E-value=8.1e-06  Score=55.83  Aligned_cols=148  Identities=20%  Similarity=0.223  Sum_probs=78.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCC-Ccc--------------ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA-GQE--------------RYH   73 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~-g~~--------------~~~   73 (199)
                      ..++|+|.|+||||||||+..+...- ......  --.+...++.-.+...-|.+.|+. |..              .|.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~k--vgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKL-REKGYK--VGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHH-HhcCce--eeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            47899999999999999999887421 111111  112233344445666667777776 311              111


Q ss_pred             -----------ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH
Q 029103           74 -----------SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA  142 (199)
Q Consensus        74 -----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  142 (199)
                                 ...+..++.+|++  ++|=-.+..+.. +.+...+......+.|++.++.+.+-       .-..+.+.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence                       1122233445544  455444422211 34444455544567887777766552       11223333


Q ss_pred             HHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          143 QENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       143 ~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      . .+..|+.   .+.+|-+.++..|...+..
T Consensus       151 ~-~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         151 K-LGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             h-cCCEEEE---EccchhhHHHHHHHHHhcc
Confidence            3 3333333   4555556788877776643

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.48  E-value=5.6e-07  Score=66.04  Aligned_cols=121  Identities=14%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH-------HHHHHHHHHHHHHHHh----CCCCceEEEEEe
Q 029103           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM-------DSFERAKKWVQELQRQ----GNPNLIMFLVAN  123 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~----~~~~~p~ivv~n  123 (199)
                      .-..+.++.+|.+|+.....-|-..+..+.++|+|+..++-       .+...+++-+..+++.    -...+.+|+.+|
T Consensus       198 qVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLN  277 (379)
T KOG0099|consen  198 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLN  277 (379)
T ss_pred             eccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEec
Confidence            33456688999999999999999999999999999987742       1223333333332221    124566899999


Q ss_pred             CCCCccc------------------------------ccCCHHHHHHHHHH-------------hCCcEEEeccCCCCCH
Q 029103          124 KVDLEEK------------------------------RKVKNEEGELYAQE-------------NGLSFLETSAKSAHNV  160 (199)
Q Consensus       124 K~D~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~v  160 (199)
                      |.|+..+                              +......++.+.+.             +-+.+.++.|.+.+++
T Consensus       278 KqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenI  357 (379)
T KOG0099|consen  278 KQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  357 (379)
T ss_pred             HHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHH
Confidence            9998321                              11112223333322             1245677888999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 029103          161 NELFYEIAKRLAEVN  175 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (199)
                      ..+|+...+.+.+..
T Consensus       358 rrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  358 RRVFNDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998777776643

>PRK14974 cell division protein FtsY; Provisional

Probab=98.47  E-value=2.5e-07  Score=71.63  Aligned_cols=94  Identities=20%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCcccccc-c---cccc--ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHS-L---APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      +.+.++||+|...... +   ...+  ..+.|.+++|+|++... ..+....+..    .   -.+--+++||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~----~---~~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE----A---VGIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh----c---CCCCEEEEeeecCCCCc
Confidence            4588999999653221 1   1111  23568889999987542 2232222211    1   11247889999975321


Q ss_pred             cCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103          132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                        .  .+...+...+.|+..++  +|++++++..
T Consensus       296 --G--~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 --G--AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             --c--HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence              1  22333345688888887  6888876653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.46  E-value=2.2e-07  Score=70.20  Aligned_cols=94  Identities=18%  Similarity=0.142  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCCcccccccc----c--------ccccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103           58 TIKFDIWDTAGQERYHSLA----P--------MYYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~----~--------~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (199)
                      .+.+.++||||....+...    .        ..-...|..++|+|++.. +.+...    ..+.+...   +.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence            4678899999975432211    0        112247899999999743 223332    22222111   35789999


Q ss_pred             CCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103          125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .|.....    =.........+.|+..++  +|++++++-
T Consensus       227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            9974421    123344445688888887  677776553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.45  E-value=6.7e-07  Score=67.89  Aligned_cols=100  Identities=20%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             CCccc-ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103           67 AGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN  145 (199)
Q Consensus        67 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  145 (199)
                      |||.. ........+..+|++++|+|+.++.+.+.. .+...+     .+.|+++|+||+|+.+....  ..........
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence            66642 223345668899999999999876443221 111212     25789999999998543211  1111122234


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          146 GLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       146 ~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      +.+++.+|++++.|++++.+.|.+.+.+.
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            56789999999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.41  E-value=1.3e-06  Score=60.81  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCccccccccc--------ccccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAP--------MYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      .....++|++|.........        ......+.+++++|+.+... ++....+..++...      -+|++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            45678999999754332222        12345789999999754322 11212233333322      3789999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.41  E-value=2e-06  Score=66.35  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=82.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC------------------CCcCcccee-----EEEE--------------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD------------------FQESTIGAA-----FFTQ--------------   50 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~------------------~~~~~~~~~-----~~~~--------------   50 (199)
                      -.+++|+++|+..+|||||+-.|..+...+                  -..+..+-+     ....              
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            369999999999999999998776532211                  111111111     1111              


Q ss_pred             EEEeCCeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           51 VLSLNEVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        51 ~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .-.+.+....++|+|.+|++.|....-.-..  -.|.-++++-.+-. -.-..++.+.....   -..|+++|.+|+|+.
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence            1112233345889999999998754332211  23444555544321 11111222222222   267788888888876


Q ss_pred             ccccCCHHHHHHHH-----------------------------HHhCCcEEEeccCCCCCHHHHH
Q 029103          129 EKRKVKNEEGELYA-----------------------------QENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus       129 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ......+ ..+.+.                             .+.-|++|.+|-.+|+++.-+.
T Consensus       287 PANiLqE-tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  287 PANILQE-TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             cHHHHHH-HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            5433222 111111                             1223578999999999976443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.41  E-value=1e-06  Score=60.01  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=50.6

Q ss_pred             ccccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      ..+..+|++++|+|+.++.+..  .+..++..   . ..+.|+++++||+|+.+...  ...........+..++++|++
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            3567899999999998875433  33333332   2 25689999999999864332  223334444556789999999


Q ss_pred             CCC
Q 029103          156 SAH  158 (199)
Q Consensus       156 ~~~  158 (199)
                      ++.
T Consensus        81 ~~~   83 (141)
T cd01857          81 KEN   83 (141)
T ss_pred             CCC
Confidence            875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=6.8e-07  Score=70.39  Aligned_cols=57  Identities=19%  Similarity=0.199  Sum_probs=39.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .++.++|.+|||||||+|+|.+....    ....+..+++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            47999999999999999999864311    112344555666555555443   3599999974

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.37  E-value=7.1e-06  Score=63.29  Aligned_cols=144  Identities=18%  Similarity=0.144  Sum_probs=76.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeE---------EEEE-----EEeC---------------Ce
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAF---------FTQV-----LSLN---------------EV   57 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~---------~~~~-----~~~~---------------~~   57 (199)
                      .+|-|.-|||||||++.++.+..-..      ....++++.         ...+     +.|.               ..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            47889999999999999998442000      001111110         0000     1111               12


Q ss_pred             EEEEEEEeCCCcccccccccccc--------cCCCEEEEEEECCCHHHH-HHHHH-HHHHHHHhCCCCceEEEEEeCCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDSF-ERAKK-WVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      .+...++++.|..........+.        ...|+++-|+|+..-... ..... ...++.   ..   =+|++||+|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~A---D~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FA---DVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hC---cEEEEecccC
Confidence            24566888888665543333332        235789999998654222 11222 222232   12   3899999999


Q ss_pred             cccccCCHHHHHHHHHH--hCCcEEEeccCCCCCHHHHHH
Q 029103          128 EEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       128 ~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      .+....  .......+.  ...+++.++. ...+..++++
T Consensus       158 v~~~~l--~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         158 VDAEEL--EALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             CCHHHH--HHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            886642  233333333  3456777776 3344444443

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=1.9e-07  Score=72.69  Aligned_cols=134  Identities=16%  Similarity=0.156  Sum_probs=97.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC--------CCCCC--------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF--------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      .-.+|.|+.+-.+||||.-.+++--        .....        .....+++....-+++++.+.++.++||||+-.|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            4568999999999999998887641        11110        1223466777788889999999999999999999


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (199)
                      .-..+..++-.|+++.|||.+-.-..+.+..|.+    ....++|-...+||.|......  .........+++..
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak  185 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK  185 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence            8888888999999999999986644555556643    3356788889999999865332  23344455556654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.37  E-value=1.2e-06  Score=69.00  Aligned_cols=58  Identities=19%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~   71 (199)
                      .+|+++|.+|||||||+|+|.+....    .......+++.....+..+.   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            48999999999999999999974321    12334455555555554422   246999999753

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.35  E-value=1.3e-06  Score=66.66  Aligned_cols=60  Identities=18%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCC-c-----CccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-E-----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      -.++++|++|||||||+|.|.+....... .     ....++.........+..   .++|+||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            46899999999999999999975432211 1     112233444444444322   489999986643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.34  E-value=7.5e-07  Score=64.32  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEe
Q 029103           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVAN  123 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~n  123 (199)
                      +-..+.+.+.|.+|+.....-|-..+.++-.+++.+.++.          ...+++.+-++..+..+. ..+.++|+.+|
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN  274 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  274 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence            3345567789999998888888888888888877766653          344555556666676665 37888999999


Q ss_pred             CCCCcccc----------------cCCHHHHHHHHHHh----C------CcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          124 KVDLEEKR----------------KVKNEEGELYAQEN----G------LSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       124 K~D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      |.|+.++.                +.+...+.+|....    +      +.-..+.|.+.+++.-+|..+.+-+.+.
T Consensus       275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            99984422                22333344444321    1      1124666788899999999888777654

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=2.6e-06  Score=74.94  Aligned_cols=114  Identities=23%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeC-CeEEEEEEEeCCCccc--------cccccccc----
Q 029103           14 VLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQER--------YHSLAPMY----   79 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~--------~~~~~~~~----   79 (199)
                      +|+|+||+||||++.. ++..|+- ....-.+..... +..|+ ...-.-.++||.|...        ....|..+    
T Consensus       129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             EEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            7999999999999875 3333321 111111111111 22332 2223456889998321        11233322    


Q ss_pred             -----ccCCCEEEEEEECCCH-----H----HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           80 -----YRGAAAAVVVYDITSM-----D----SFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        80 -----~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                           .+..|++|+.+|+.+-     .    ....++.-+.++...-....|+++++||.|+..
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                 5778999999998742     1    123334445666666678999999999999864

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.31  E-value=1.2e-06  Score=69.94  Aligned_cols=57  Identities=23%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .+.|++||-|+|||||+||+|.|.+-.. .++++|.+.+..++.+..   .+.|.||||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            6999999999999999999999876443 677888888888887654   46699999953

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.30  E-value=1.4e-06  Score=66.55  Aligned_cols=101  Identities=21%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             CCCccc-ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 029103           66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE  144 (199)
Q Consensus        66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  144 (199)
                      .|||.. -.......+..+|++++|+|+.++.+.+.  .++....    .+.|+++|+||+|+.+....  .....+...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHH
Confidence            367642 22334556789999999999987644322  1111111    26789999999998543211  111222234


Q ss_pred             hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          145 NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       145 ~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .+.+++.+|++++.|++++.+.|.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            466789999999999999999998887654

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.30  E-value=6.6e-06  Score=65.60  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=60.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh------CCC----CCCC-----------cCccceeEEEEEEEeC-------------
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK------GQF----FDFQ-----------ESTIGAAFFTQVLSLN-------------   55 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~------~~~----~~~~-----------~~~~~~~~~~~~~~~~-------------   55 (199)
                      +..|+++|++||||||++..|..      .+.    .+.+           ....+.+.+......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            56789999999999999988863      110    0000           0001111111100000             


Q ss_pred             CeEEEEEEEeCCCcccccc-c---ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           56 EVTIKFDIWDTAGQERYHS-L---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ...+.+.++||+|...... +   ...  -..+.+-+++|+|++-......   ....+.+.   -.+.-+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence            1246789999999643321 1   111  1234678899999874422211   11222221   23458899999964

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.3e-05  Score=66.13  Aligned_cols=66  Identities=17%  Similarity=0.275  Sum_probs=42.2

Q ss_pred             EEEEEeCCCccc---ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           60 KFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        60 ~v~l~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .+.++|.||.+-   ...-.-.+-..+|++|+|.++-+...... +.++..+...   ++.+.|+.||.|...
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPNIFILNNKWDASA  275 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCcEEEEechhhhhc
Confidence            366889998542   22223445678999999999876544433 4444444433   445778889999754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.28  E-value=1.9e-06  Score=66.11  Aligned_cols=58  Identities=19%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCC-c-----CccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-E-----STIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~   71 (199)
                      -.++++|++|||||||+|+|.+....... .     ....++.....+.+.+.   ..++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            36899999999999999999875432111 1     11112333334444333   25899999764

>PRK01889 GTPase RsgA; Reviewed

Probab=98.27  E-value=4.8e-06  Score=65.39  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=56.7

Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSA  157 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~  157 (199)
                      ...++|.+++|+++..+-....+.+++..+...   +++.+||+||+|+.+..   ......+.. ..+.+++.+|++++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence            368899999999996433333444555554443   55678999999996531   111122221 45678999999999


Q ss_pred             CCHHHHHHHHH
Q 029103          158 HNVNELFYEIA  168 (199)
Q Consensus       158 ~~v~~~~~~l~  168 (199)
                      .|++++..+|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999888774

>PRK13796 GTPase YqeH; Provisional

Probab=98.24  E-value=6e-06  Score=65.12  Aligned_cols=83  Identities=34%  Similarity=0.415  Sum_probs=56.2

Q ss_pred             cCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHHHhCC---cEEEe
Q 029103           81 RGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQENGL---SFLET  152 (199)
Q Consensus        81 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~---~~~~~  152 (199)
                      ...+ .+++|+|+.|..     ..|...+.... .+.|+++|+||+|+.... ......    ..+++..++   .++.+
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~-~~~~~i~~~l~~~~k~~g~~~~~v~~v  139 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKS-VKKNKVKNWLRQEAKELGLRPVDVVLI  139 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCc-cCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence            3444 899999997743     23444444432 367899999999996422 222222    233455565   58999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~  170 (199)
                      ||+++.|++++++.|.+.
T Consensus       140 SAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        140 SAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999999765

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=3.7e-06  Score=68.38  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF----------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      .--+|.+.-+-.+||||+-++.+-..-.                -......+++....-..+.+..+.++++|||||-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            4567899999999999999886541100                001222345555555666777899999999999998


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .-.....++-.|+.++|++....-.-+....|. ++..   .+.|.+..+||.|.....
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~r---y~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKR---YNVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHh---cCCCeEEEEehhhhcCCC
Confidence            888888888999999999987553233333443 3333   478899999999986544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=2.1e-05  Score=61.77  Aligned_cols=140  Identities=13%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeEE------------------EEEEE---------eCCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFF------------------TQVLS---------LNEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~---------~~~~~~   59 (199)
                      .-.++++|++|+||||++..|.......   ........+.+                  .....         ......
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3478899999999999999987532110   00000111110                  00000         011234


Q ss_pred             EEEEEeCCCccccccc----cccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 029103           60 KFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEEK  130 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~  130 (199)
                      .+.++||+|....+..    ...+  .....-.++|++.+.. +.+..+..-+..........  .+--+|+||.|....
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            6889999996543321    1111  1223456889988753 34444433333322111111  123688899996542


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEec
Q 029103          131 RKVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                          .=.+.......++|+..++
T Consensus       297 ----~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        297 ----LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ----ccHHHHHHHHHCcCeEEEe
Confidence                2233445556677765555

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.12  E-value=1.4e-05  Score=56.32  Aligned_cols=84  Identities=14%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             EEEEEEEeCCCcccccc----ccccc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ...+.++|++|...+..    ....+  ....+.+++|+|......   .......+.+...   ...+++||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            44578899999743221    11111  124899999999865432   2233333332222   257788999965422


Q ss_pred             cCCHHHHHHHHHHhCCcEEE
Q 029103          132 KVKNEEGELYAQENGLSFLE  151 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~  151 (199)
                          -.....+...++|+..
T Consensus       156 ----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 ----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             ----chhhhhHHHHCcCeEe
Confidence                1122255555666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.10  E-value=2e-05  Score=54.10  Aligned_cols=58  Identities=22%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      .+.+.++|++|.....   ..++..+|.+++|....-.+.+.-++   ..+...  .   -++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~~--~---~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIMEI--A---DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhhh--c---CEEEEeCCC
Confidence            4678899999965322   34788899898888765222222211   112221  1   388899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.09  E-value=7.7e-05  Score=57.70  Aligned_cols=95  Identities=8%  Similarity=0.069  Sum_probs=49.7

Q ss_pred             EEEEEEeCCCccccccccccccc--------CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYR--------GAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      ....++++.|......+...++.        ..++++.|+|+.+.... +.......++.   ..   -+|++||+|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~A---D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YA---DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hC---CEEEEeccccCC
Confidence            45678889887655544433321        24789999998643221 11111222222   22   389999999876


Q ss_pred             cccCCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHH
Q 029103          130 KRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELF  164 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~  164 (199)
                      ..    .......+..+  .+++.++ ........+|
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            32    23333333333  4555544 2223444444

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=1.2e-05  Score=64.30  Aligned_cols=115  Identities=22%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC------------CCCCC--CcCccceeEEEEEEEe----------------CCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG------------QFFDF--QESTIGAAFFTQVLSL----------------NEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~------------~~~~~--~~~~~~~~~~~~~~~~----------------~~~~~   59 (199)
                      -.++.++.+...|||||-+.|...            .+.+.  .+...++++...-+..                ++..+
T Consensus        19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F   98 (842)
T KOG0469|consen   19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF   98 (842)
T ss_pred             cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence            346788999999999999998751            11111  1122233333322222                34567


Q ss_pred             EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .++++|.|||-.|.+.....++-.|+.++|+|.-+.-.++.-..+.+.+.+.   -+| ++++||.|..
T Consensus        99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DRA  163 (842)
T KOG0469|consen   99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDRA  163 (842)
T ss_pred             eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhHH
Confidence            8999999999999998888999999999999998775555544454555443   233 7789999953

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.07  E-value=1.3e-05  Score=56.25  Aligned_cols=135  Identities=19%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeC-CCcc--------------------
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT-AGQE--------------------   70 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~-~g~~--------------------   70 (199)
                      +|+|.|+||+|||||++++...- ...  ......+......-++...-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l-~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL-KKK--GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH-HHT--CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh-hcc--CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999988532 110  11111122222333455555666666 3311                    


Q ss_pred             --ccccc----ccccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH
Q 029103           71 --RYHSL----APMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ  143 (199)
Q Consensus        71 --~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  143 (199)
                        .+...    ....+..+|  ++|+|=-.+  ++.. ..|.+.+...-..+.|++.++.+..       .......+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence              11111    111123444  666664322  1111 2334444443346788888876552       0112355556


Q ss_pred             HhCCcEEEeccCCCCCH
Q 029103          144 ENGLSFLETSAKSAHNV  160 (199)
Q Consensus       144 ~~~~~~~~~s~~~~~~v  160 (199)
                      ..+..++.++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            67788999987777664

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.07  E-value=8.6e-05  Score=60.23  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeC
Q 029103           59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        59 ~~v~l~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK  124 (199)
                      -+..+.|.||.-.             -..+...+..+.+++|+|+--.+.+.   -+.... .+.+..+.+...|+|+||
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcCCCCCeeEEEEee
Confidence            3577899999421             12345678899999999986543332   222222 233344567788999999


Q ss_pred             CCCcccccCCHHHHHH
Q 029103          125 VDLEEKRKVKNEEGEL  140 (199)
Q Consensus       125 ~D~~~~~~~~~~~~~~  140 (199)
                      +|+.+..--.....+.
T Consensus       489 VDlAEknlA~PdRI~k  504 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQ  504 (980)
T ss_pred             cchhhhccCCHHHHHH
Confidence            9997653333333333

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.06  E-value=5.7e-06  Score=58.69  Aligned_cols=68  Identities=24%  Similarity=0.217  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCcccccccc---c--ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSLA---P--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ....++++.|......+.   .  ...-..+.+|.|+|+.+-.........+......  .   -+|++||+|+.+..
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--A---DvIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--A---DVIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh--c---CEEEEeccccCChh
Confidence            456677888855444330   0  0123468999999996643333333322222222  2   28999999998755

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.05  E-value=1e-06  Score=63.39  Aligned_cols=84  Identities=18%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCccccccc----cccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      +.+.++||+|...+...    +..+  ....+-+++|++++.. +.++.....+..+    ..   --+++||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~~---~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----GI---DGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----ST---CEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----cC---ceEEEEeecCCCC-
Confidence            45889999996543311    1111  1256788999998754 2233332222211    11   2677999996432 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEec
Q 029103          132 KVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                         .-.........+.|+-.++
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEE
T ss_pred             ---cccceeHHHHhCCCeEEEE
Confidence               2334555666787776665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.03  E-value=6.3e-05  Score=56.95  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=66.6

Q ss_pred             ccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEe
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                      .+.+.-+.+.|-+++|+.+.+|+ +...+.+++-....   .++.-+|++||+|+.+.......+...+....+.+++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            34444556678888888888775 34444444444433   355568889999998755443345666777789999999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~  171 (199)
                      |+++++++.++.+.+...+
T Consensus       148 s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         148 SAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             cCcCcccHHHHHHHhcCCe
Confidence            9999999999988776543

>PRK13695 putative NTPase; Provisional

Probab=98.02  E-value=0.00027  Score=49.85  Aligned_cols=22  Identities=41%  Similarity=0.699  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.00  E-value=3.4e-05  Score=43.30  Aligned_cols=44  Identities=27%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           82 GAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      -.++++|++|++.  +.+.+....++.+++.. ..+.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence            4679999999985  45677777888888877 56899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.00  E-value=1.4e-05  Score=62.95  Aligned_cols=134  Identities=15%  Similarity=0.094  Sum_probs=69.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC----------CCc-----------CccceeEEEEEE---------EeC-CeE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----------FQE-----------STIGAAFFTQVL---------SLN-EVT   58 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~---------~~~-~~~   58 (199)
                      ...|+++|+.|+||||++..|...-...          .+.           ...+.......-         ... ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            3579999999999999999987511000          000           000111110000         000 013


Q ss_pred             EEEEEEeCCCccccccc----ccccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           59 IKFDIWDTAGQERYHSL----APMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-.  .+.+...+..+..    -..--+|+||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence            57889999996432211    11222  234677889987532  2222333333332    1223688999996542  


Q ss_pred             CCHHHHHHHHHHhCCcEEEec
Q 029103          133 VKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s  153 (199)
                        .=.+.......++|+..++
T Consensus       393 --~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2223445556677766555

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.96  E-value=1.3e-05  Score=60.34  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC----CCcCccceeEEEEE-EEeCCeEEEEEEEeCCCcc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQESTIGAAFFTQV-LSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~v~l~d~~g~~   70 (199)
                      ..+++++|+|-||+|||||+|++-......    ......+++..... +.+.... .+.+.||||.-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil  207 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL  207 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence            358999999999999999999987633221    12233444444443 3333322 48899999964

>PRK10867 signal recognition particle protein; Provisional

Probab=97.94  E-value=1.1e-05  Score=64.55  Aligned_cols=87  Identities=14%  Similarity=0.056  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCcccccc-cc---ccc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHS-LA---PMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .+.+.++||+|....+. +.   ..+  .-..+.+++|+|.....   ........+....   ...-+|+||.|.....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence            35688999999543221 11   111  12456779999986532   2222223332211   1236788999953311


Q ss_pred             cCCHHHHHHHHHHhCCcEEEecc
Q 029103          132 KVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                          =.+.......++|+.+++.
T Consensus       257 ----G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                1145555666777665553

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.94  E-value=0.00033  Score=51.05  Aligned_cols=62  Identities=32%  Similarity=0.349  Sum_probs=38.5

Q ss_pred             EEEEeC-CCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           61 FDIWDT-AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        61 v~l~d~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      +.+.|| +|.+.|.   +...+++|.+|.|+|.+- .++....+.-+...+..  -.++.+|+||+|..
T Consensus       136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence            445555 3444433   334678999999999873 45555444433333332  36789999999953

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.94  E-value=0.0012  Score=45.92  Aligned_cols=142  Identities=13%  Similarity=0.082  Sum_probs=100.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEe-CCCcccccccccccccCCCEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD-TAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d-~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      -...|+++|..+.++..|.+++....-    .  .              .++|.+-- .|-..+....    -...|.++
T Consensus        14 n~atiLLVg~e~~~~~~LA~a~l~~~~----~--~--------------~l~Vh~a~sLPLp~e~~~l----RprIDlIV   69 (176)
T PF11111_consen   14 NTATILLVGTEEALLQQLAEAMLEEDK----E--F--------------KLKVHLAKSLPLPSENNNL----RPRIDLIV   69 (176)
T ss_pred             ceeEEEEecccHHHHHHHHHHHHhhcc----c--e--------------eEEEEEeccCCCcccccCC----CceeEEEE
Confidence            378999999999999999999985220    1  0              11211111 1111122222    34689999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +++|..+..+++.+..-+..+.....-+ -++++.+-....+...+...+...++..++++++...-...++...+-+.|
T Consensus        70 Fvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRL  148 (176)
T PF11111_consen   70 FVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRL  148 (176)
T ss_pred             EEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHH
Confidence            9999999999988877666654332222 256777777767777888999999999999999999999998888888888


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.-..
T Consensus       149 L~~lqi~a  156 (176)
T PF11111_consen  149 LRMLQICA  156 (176)
T ss_pred             HHHHHHHc
Confidence            88776543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=2.8e-05  Score=63.36  Aligned_cols=134  Identities=13%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeE------------------EEEEEEe---------CCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAF------------------FTQVLSL---------NEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~------------------~~~~~~~---------~~~~~   59 (199)
                      .-.|+|+|+.|+||||++..|...-...   ........+.                  ......-         ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998887521100   0000000000                  0000000         11246


Q ss_pred             EEEEEeCCCcccccccc----cccc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103           60 KFDIWDTAGQERYHSLA----PMYY-RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  134 (199)
                      .+.|+||+|....+...    ..+. ......++|++.+..  ...+...+..+...    .+.-+|+||.|....    
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~~----  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETGR----  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCccc----
Confidence            78899999965332110    0000 012345677776532  33333333333322    346799999996431    


Q ss_pred             HHHHHHHHHHhCCcEEEec
Q 029103          135 NEEGELYAQENGLSFLETS  153 (199)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~s  153 (199)
                      .-.........++++..++
T Consensus       500 lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe
Confidence            2334455556677766665

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.93  E-value=0.00014  Score=56.83  Aligned_cols=21  Identities=29%  Similarity=0.626  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+|.|..|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999863

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=1.1e-05  Score=64.34  Aligned_cols=133  Identities=15%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCc--------------------cceeEEEEEEE-------eCCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQEST--------------------IGAAFFTQVLS-------LNEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~--------------------~~~~~~~~~~~-------~~~~~~   59 (199)
                      .-.|+++|+.|+||||++..|.+.....   .....                    .++......-.       ......
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            4579999999999999999887531100   00000                    00000000000       011234


Q ss_pred             EEEEEeCCCcccccc----cccccc--cCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      .+.++||+|......    ....+.  ....-.++|++++. ...+.++   +..+..    -.+--+|+||.|....  
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~~--  341 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAAS--  341 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCCC--
Confidence            578999999653221    112221  22346788999873 3333333   222221    2223688999996542  


Q ss_pred             CCHHHHHHHHHHhCCcEEEec
Q 029103          133 VKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s  153 (199)
                        .=.+.......++++..++
T Consensus       342 --~G~~l~~~~~~~lPi~yvt  360 (420)
T PRK14721        342 --LGIALDAVIRRKLVLHYVT  360 (420)
T ss_pred             --ccHHHHHHHHhCCCEEEEE
Confidence              2234555566777776665

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.90  E-value=2.1e-05  Score=63.21  Aligned_cols=136  Identities=19%  Similarity=0.149  Sum_probs=69.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC----C------CCCCcC-----------ccceeEEEEEEEe-----------CC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ----F------FDFQES-----------TIGAAFFTQVLSL-----------NE   56 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~----~------~~~~~~-----------~~~~~~~~~~~~~-----------~~   56 (199)
                      .+..|+++|++|+||||++..|...-    .      .+.+.+           ..+.+........           ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            46789999999999999988876510    0      000000           0011111100000           00


Q ss_pred             eEEEEEEEeCCCccccccc----ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           57 VTIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      ....+.++||+|.......    ...  .....|.+++|+|.+...   ........+...   -...-+|+||.|....
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~i~gvIlTKlD~~a~  247 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VGIGGIIITKLDGTAK  247 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CCCCEEEEecccCCCc
Confidence            1236889999996543211    111  134678899999987542   111222222211   1123688899996431


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEecc
Q 029103          131 RKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                          .=.+.......+.|+.+++.
T Consensus       248 ----~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 ----GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ----ccHHHHHHHHHCcCEEEEec
Confidence                11233444455667655553

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.88  E-value=0.00055  Score=48.44  Aligned_cols=86  Identities=24%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                      ..+.+.++|+|+...  ......+..+|.+++++..+ ..+...+..+++.+...   +.|+.+++|+.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            456789999996532  12334568899999999876 34556666666666543   4567899999996432   244


Q ss_pred             HHHHHHHHhCCcEEE
Q 029103          137 EGELYAQENGLSFLE  151 (199)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (199)
                      +..++....+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            566677777877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.87  E-value=2.3e-05  Score=63.50  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      --++++|+.||||||.+..|.+
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4689999999999999999886

>TIGR00959 ffh signal recognition particle protein

Probab=97.85  E-value=2.8e-05  Score=62.33  Aligned_cols=87  Identities=14%  Similarity=0.063  Sum_probs=48.1

Q ss_pred             EEEEEEEeCCCccccccc----ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .+.+.++||+|....+..    ...  ..-..+.+++|+|.+...   ........+.....   ..-+|+||.|.....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcccc
Confidence            356889999995432211    111  123467889999987542   22233333332211   246889999953311


Q ss_pred             cCCHHHHHHHHHHhCCcEEEecc
Q 029103          132 KVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                          -.+.......++|+..+..
T Consensus       256 ----G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC
Confidence                1255556667777766554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.85  E-value=1.7e-05  Score=61.68  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=44.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ   69 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~   69 (199)
                      ...++++|+|-|++||||+||+|......+ .....+++.....+..+   -.+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheecc---CCceeccCCce
Confidence            568999999999999999999999877654 34556666666666553   35669999995

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.85  E-value=9.1e-05  Score=47.54  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=50.2

Q ss_pred             EEEEc-CCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           13 LVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        13 i~v~G-~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      |.+.| ..|+||||+...|...- .....+..-       +..+ ..+.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~-------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLL-------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEE-------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 56999999987765422 111111111       1111 11678899998864322  2356778999999998


Q ss_pred             CCCHHHHHHHHHHHH
Q 029103           92 ITSMDSFERAKKWVQ  106 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~  106 (199)
                      . +..++..+..+++
T Consensus        71 ~-~~~s~~~~~~~~~   84 (104)
T cd02042          71 P-SPLDLDGLEKLLE   84 (104)
T ss_pred             C-CHHHHHHHHHHHH
Confidence            6 4566766666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.84  E-value=7.6e-05  Score=50.71  Aligned_cols=107  Identities=19%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC
Q 029103           14 VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (199)
                      +.-|..|+|||++.-.+...- .....+..-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALAL-AKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            355889999999976655321 11111111111110   001112678899998753  223346788999999999875


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           94 SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        94 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                       ..++......++.+.... ...++.+++|+.+..
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             455665555566665442 345678999999843

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=2.5e-05  Score=60.86  Aligned_cols=156  Identities=18%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC-----------------------------CCCCCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-----------------------------FFDFQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   57 (199)
                      +...+++.++|+..+||||+-..+....                             ..+......+.+.......+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3558999999999999999876654400                             00111122223333333444445


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH---HHH---HHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FER---AKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ..++.+.|+|||..|-..+-.-..++|+.++|+++...+-   |+.   .+.. ..+... ..-...++++||.|-+.. 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt-~gv~~lVv~vNKMddPtv-  232 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT-AGVKHLIVLINKMDDPTV-  232 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh-hccceEEEEEEeccCCcc-
Confidence            5678899999999888777667788999999998753211   111   1111 112121 223446888999996531 


Q ss_pred             cCCHHH-------HHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 029103          132 KVKNEE-------GELYAQENG------LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       132 ~~~~~~-------~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  165 (199)
                      +.+.+.       ...+.+..+      ..++++|..+|.++++..+
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            112211       122222222      4589999999999887664

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.82  E-value=0.00012  Score=57.51  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=73.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCC-CCCC--cCccceeEEEE-----------------EEEe----------CCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQ--ESTIGAAFFTQ-----------------VLSL----------NEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~--~~~~~~~~~~~-----------------~~~~----------~~~~~   59 (199)
                      .-.|+++||.||||||-+-.|..... ....  ..-++++.+..                 ....          .....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            55789999999999998877765322 0111  11111111110                 0000          12345


Q ss_pred             EEEEEeCCCccccccc----ccccccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           60 KFDIWDTAGQERYHSL----APMYYRG--AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      .+.|+||.|...++..    ...++..  ..-+.+|++++..  .+.++..+..+.....    --+++||.|....   
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDET~s---  353 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDETTS---  353 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEcccccCc---
Confidence            6889999997766532    2333333  3455668887743  4556666666543322    2578999996542   


Q ss_pred             CHHHHHHHHHHhCCcEEEec
Q 029103          134 KNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~s  153 (199)
                       .=.......+.+.|+..++
T Consensus       354 -~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         354 -LGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             -hhHHHHHHHHhCCCeEEEe
Confidence             2223344445566655444

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.82  E-value=1.7e-05  Score=56.13  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999875

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=3.6e-05  Score=65.38  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEE----------------EEEEe-----------CCeEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFT----------------QVLSL-----------NEVTIK   60 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~----------------~~~~~-----------~~~~~~   60 (199)
                      --|+++|+.||||||.+..|.+......   .......+.+.                .....           ......
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3679999999999999999886321110   00001111100                00000           112346


Q ss_pred             EEEEeCCCcccccc----ccccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           61 FDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        61 v~l~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      +.|+||+|......    .....  ....+-.++|+|.+.. +.+.++   ...+...... .+--+|+||.|....   
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~-~i~glIlTKLDEt~~---  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGE-DVDGCIITKLDEATH---  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccC-CCCEEEEeccCCCCC---
Confidence            88999999432221    11111  2234567889998742 333333   3333221100 134688999996542   


Q ss_pred             CHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103          134 KNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                       .=.+..+....++|+..++  +|++|
T Consensus       339 -~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 -LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             -ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence             2223445556677776665  34444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.82  E-value=1.9e-05  Score=52.11  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

...

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.78  E-value=2.7e-05  Score=61.02  Aligned_cols=134  Identities=15%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC----------CCCcC-----------ccceeEEEEEEE---------eC-CeE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF----------DFQES-----------TIGAAFFTQVLS---------LN-EVT   58 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~---------~~-~~~   58 (199)
                      .-.|+++|++|+||||++..|......          +.+..           ..+.......-.         .. ...
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~  285 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC  285 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence            456899999999999999988751100          00000           011111100000         00 023


Q ss_pred             EEEEEEeCCCccccccc----cccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           59 IKFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      +.+.++||+|...+...    ...+..  ..+.+++|++.+.  ...++...+..+.    .-.+--+|+||.|....  
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~--  357 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR--  357 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC--
Confidence            57889999997543321    111221  3356677776532  2333333333322    12223688999996432  


Q ss_pred             CCHHHHHHHHHHhCCcEEEec
Q 029103          133 VKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s  153 (199)
                        .=.+.......+.|+..++
T Consensus       358 --~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        358 --IGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              2223445556677766665

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.78  E-value=2.8e-05  Score=44.70  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+|.|+.|+|||||++++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999999765

>PRK08118 topology modulation protein; Reviewed

Probab=97.78  E-value=2.4e-05  Score=54.92  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +|+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999864

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.76  E-value=0.00026  Score=44.39  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-ccccccCCCEEEEEEE
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD   91 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-~~~~~~~~d~~i~v~d   91 (199)
                      +++.|.+|+||||+...+...--. ...+..         .++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887753211 111111         112    6779999886432221 1445667899999998


Q ss_pred             CCCHHHHHHHHH
Q 029103           92 ITSMDSFERAKK  103 (199)
Q Consensus        92 ~~~~~s~~~~~~  103 (199)
                      ... .++.....
T Consensus        68 ~~~-~~~~~~~~   78 (99)
T cd01983          68 PEA-LAVLGARR   78 (99)
T ss_pred             Cch-hhHHHHHH
Confidence            654 33444333

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.0002  Score=57.04  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC--CCCc--------------------CccceeEEEEE------EEeCCeEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQE--------------------STIGAAFFTQV------LSLNEVTIKF   61 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~--------------------~~~~~~~~~~~------~~~~~~~~~v   61 (199)
                      ..-|+++|++||||||++..|......  ....                    ...+.+.....      .......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            346889999999999999988752100  0000                    00111111000      0001124567


Q ss_pred             EEEeCCCcccccc----ccccccc-----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           62 DIWDTAGQERYHS----LAPMYYR-----GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        62 ~l~d~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      .++||+|......    .+..++.     ...-.++|+|++...  +.+...+..+..    -.+--+|+||.|....  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~--  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF--  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence            8999999643221    1122221     234678899987542  222222222211    1223788999996432  


Q ss_pred             CCHHHHHHHHHHhCCcEEEec
Q 029103          133 VKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s  153 (199)
                        .=.+.......+.|+..++
T Consensus       375 --~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              1223445556677765555

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.74  E-value=0.00028  Score=56.81  Aligned_cols=86  Identities=17%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCCccccc----cccccccc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           58 TIKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      .+.+.++|++|.....    .....++.   ...-+++|++.+-.  ...+...+..+...   + +--+++||.|....
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~  372 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS  372 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc
Confidence            3568899999975432    11222222   23466788887632  22223333333211   1 23688999996432


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEec
Q 029103          131 RKVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                          .-.........++++..++
T Consensus       373 ----~G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        373 ----LGSILSLLIESGLPISYLT  391 (424)
T ss_pred             ----ccHHHHHHHHHCCCEEEEe
Confidence                2245666667788877666

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.74  E-value=0.00027  Score=47.62  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ...+++.|++|+|||+|++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4468999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07261 topology modulation protein; Provisional

Probab=97.73  E-value=3.1e-05  Score=54.58  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +|+|+|++|+|||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.70  E-value=0.00031  Score=49.75  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999998643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.69  E-value=3.4e-05  Score=52.44  Aligned_cols=21  Identities=38%  Similarity=0.695  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+++|+||||||||++.|...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999753

...

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.66  E-value=2.6e-05  Score=54.78  Aligned_cols=49  Identities=20%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK   60 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (199)
                      ..=++|.||+|||||||+++|....  ....+...+++..+..-.++..+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~   52 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYF   52 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeE
Confidence            3457899999999999999998654  333444444444444444444443

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00026  Score=53.41  Aligned_cols=133  Identities=15%  Similarity=0.085  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-C--------------------CcCccceeEEEEEEE---------e-CCeEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-F--------------------QESTIGAAFFTQVLS---------L-NEVTI   59 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~--------------------~~~~~~~~~~~~~~~---------~-~~~~~   59 (199)
                      -+|+++|++|+||||++..+...-... .                    +....+.+.....-.         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            589999999999999998876521100 0                    000011111100000         0 11246


Q ss_pred             EEEEEeCCCcccccc----cccccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      .+.++|++|......    .+..++  ...+-+++|+|++..  .+.+..++..+..    -.+--+++||.|....   
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~---  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS---  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC---
Confidence            788999999653221    111121  234568999998632  2222333333322    2223788999996542   


Q ss_pred             CHHHHHHHHHHhCCcEEEec
Q 029103          134 KNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~s  153 (199)
                       .=.+.......+.|+..++
T Consensus       227 -~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 -SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -ccHHHHHHHHHCcCEEEEe
Confidence             2233445556677766665

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.62  E-value=0.00027  Score=47.45  Aligned_cols=24  Identities=42%  Similarity=0.750  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      --|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.62  E-value=5.5e-05  Score=54.43  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhCCcEE--EeccCCCCCHHHHHHHHHHHHHhh
Q 029103          136 EEGELYAQENGLSFL--ETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .-++.++....+-.|  ++||.+.+-+.|+++.+.+...+-
T Consensus       146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            334445444444444  799999999999999888877653

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.59  E-value=5.6e-05  Score=55.17  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|+|++|||||||++.+.+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998764

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.58  E-value=8e-05  Score=44.13  Aligned_cols=21  Identities=19%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.56  E-value=9.9e-05  Score=58.09  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -+++++|.+|+|||||++.|.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            478999999999999999999743

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.0014  Score=52.10  Aligned_cols=139  Identities=12%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCC-----CCc--------------------CccceeEEEEEEE-------eCCe
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-----FQE--------------------STIGAAFFTQVLS-------LNEV   57 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~-----~~~--------------------~~~~~~~~~~~~~-------~~~~   57 (199)
                      ...|+++|++|+||||.+..|...-...     ...                    ...+.+.......       -...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4578999999999999998876421000     000                    0011111110000       0113


Q ss_pred             EEEEEEEeCCCcccccc----cccccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           58 TIKFDIWDTAGQERYHS----LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      .+.+.++||+|......    ....++..   ..-.++|+|++..  ...+...+..+..    -.+--+++||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence            45688999999654321    11122222   2257899998754  3333333333321    1234788999996442


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103          131 RKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                          .=.+..+....+.|+..++  +|.++
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence                2223445556677765555  34444

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.52  E-value=0.00032  Score=50.66  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      |+|+|++|+||||+++.+.+..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.52  E-value=0.00032  Score=46.41  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            458899999999999999998754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.52  E-value=7.8e-05  Score=54.79  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |.++|++|+|||||++.+.|-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999998873

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.52  E-value=8e-05  Score=53.18  Aligned_cols=23  Identities=13%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .=|+|+||+|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            44899999999999999999864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.51  E-value=7.4e-05  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>PRK10646 ADP-binding protein; Provisional

Probab=97.47  E-value=0.00087  Score=46.04  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -|++-|.-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998754

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.47  E-value=0.00051  Score=44.35  Aligned_cols=100  Identities=15%  Similarity=0.055  Sum_probs=59.0

Q ss_pred             EcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH
Q 029103           16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM   95 (199)
Q Consensus        16 ~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (199)
                      =+..|+||||+.-.|...-.........-.+....     .. ..+.++|+|+....  .....+..+|.++++.+.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence            36779999998776654211110111111111111     00 16789999885432  2334678899999999754 5


Q ss_pred             HHHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 029103           96 DSFERAKKWVQELQRQGNP-NLIMFLVANK  124 (199)
Q Consensus        96 ~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK  124 (199)
                      .++..+..+++.+.....+ ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6677777777777765444 4456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK06217 hypothetical protein; Validated

Probab=97.46  E-value=0.00013  Score=51.97  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.46  E-value=0.00011  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999988643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.46  E-value=0.00015  Score=49.13  Aligned_cols=21  Identities=38%  Similarity=0.708  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=97.46  E-value=0.00012  Score=51.92  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +|+|+|+||+||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998763

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.45  E-value=0.00012  Score=48.61  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998864

...

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.43  E-value=0.00014  Score=51.10  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++|+|++|+|||||+|-+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            579999999999999998876

>PRK14530 adenylate kinase; Provisional

Probab=97.42  E-value=0.00014  Score=53.15  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999875

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00013  Score=53.18  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|+|++|+|||||++.+.+
T Consensus        33 VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          33 VAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            78999999999999999976

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.40  E-value=0.00015  Score=51.41  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.40  E-value=0.00015  Score=51.75  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999754

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.39  E-value=0.0002  Score=52.03  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....-|+|+|++|+|||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35667889999999999999999753

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.39  E-value=0.00017  Score=48.04  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |++.|+||+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00235 udk uridine kinase

Probab=97.38  E-value=0.00021  Score=51.93  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...-|+|+|++|+|||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999863

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.38  E-value=0.00081  Score=45.68  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQF   35 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~   35 (199)
                      .--|++-|+-|||||||.+.+...--
T Consensus        25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          25 GDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            34578889999999999999887543

>PRK13949 shikimate kinase; Provisional

Probab=97.38  E-value=0.00018  Score=50.57  Aligned_cols=21  Identities=38%  Similarity=0.687  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+|+|++|+|||||.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998876

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.00049  Score=51.44  Aligned_cols=62  Identities=23%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----cCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~l~d~~g   68 (199)
                      ....++|+-+|..|-|||||++.|.+-.+....    .+............-.+..+++.+.||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            346899999999999999999999986664322    23333333333344466778899999998

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.38  E-value=6.8e-05  Score=58.47  Aligned_cols=59  Identities=17%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g   68 (199)
                      .....+.|+++|-|++||||++|+|-...    .-...++........+----..+-|+|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~Kk----VCkvAPIpGETKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKK----VCKVAPIPGETKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcc----cccccCCCCcchHHHHHHHHhceeEecCCC

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.36  E-value=0.0002  Score=47.92  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQF   35 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~   35 (199)
                      -.++++|++|+||||++..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4689999999999999999986543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.35  E-value=0.00018  Score=46.27  Aligned_cols=21  Identities=43%  Similarity=0.784  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14532 adenylate kinase; Provisional

Probab=97.33  E-value=0.00021  Score=51.08  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999975

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.32  E-value=0.0024  Score=52.66  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3566899999999999999874

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.31  E-value=0.0002  Score=50.98  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|+|+|||||||+++.|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.31  E-value=0.00021  Score=51.47  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.30  E-value=0.0014  Score=47.07  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+.++|+||.||||||+...+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            56789999999999999998776

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.30  E-value=0.00021  Score=50.63  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -|+|+|++|+|||||++.|.+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4799999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.28  E-value=0.00029  Score=51.25  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.28  E-value=0.0002  Score=48.43  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=23.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5688999999999999999999875

>PRK00625 shikimate kinase; Provisional

Probab=97.27  E-value=0.00028  Score=49.77  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+++|.|||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>PRK08233 hypothetical protein; Provisional

Probab=97.26  E-value=0.00032  Score=49.69  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..-|+|.|++|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            366888999999999999999853

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.26  E-value=0.00029  Score=50.30  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++|+|++|+|||||++.|++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            457899999999999999999864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00056  Score=48.09  Aligned_cols=39  Identities=21%  Similarity=0.124  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhCCcEE--EeccCCCCCHHHHHHHHHHHHHhh
Q 029103          136 EEGELYAQENGLSFL--ETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~--~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      .-+..++.+...-.|  ++||.+.+=+.|++..|.++..+-
T Consensus       162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence            334555555554444  799999999999999888777663

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.25  E-value=0.00026  Score=51.98  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998863

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.24  E-value=0.00025  Score=52.83  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+||.|+|||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999987

>PRK02496 adk adenylate kinase; Provisional

Probab=97.24  E-value=0.00034  Score=49.81  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+|+|+|+||+||||+...|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.24  E-value=0.00032  Score=47.48  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998763

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14531 adenylate kinase; Provisional

Probab=97.23  E-value=0.00033  Score=49.88  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+|+++|+|||||||+...|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.23  E-value=0.0003  Score=51.49  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998743

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.22  E-value=0.00033  Score=51.69  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++|+|+|+|||||||+...|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.22  E-value=0.00033  Score=49.51  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      -.++|+|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.22  E-value=0.00036  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|+.|+|||||++.|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.22  E-value=0.00031  Score=49.87  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|+|+|||||||+...|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999875

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.21  E-value=0.00028  Score=50.55  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.20  E-value=0.00033  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.20  E-value=0.00033  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.20  E-value=0.0057  Score=44.84  Aligned_cols=103  Identities=13%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECC--CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT--SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN  135 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  135 (199)
                      .+.+.|+|+.|.....  ....+..+|.+|+=.-.+  |-+..-....|+..+.......+|.-|++|++.-.... ...
T Consensus        83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~-~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLT-RAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhh-HHH
Confidence            3578899998865322  334466789888866555  33333333456666655557889999999998732111 111


Q ss_pred             HHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103          136 EEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ....++.  .++|++.+.....+...++|.
T Consensus       160 ~~~~e~~--~~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQL--ESLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHH--hcCCccccccccHHHHHHHHH
Confidence            1122222  258889998888877777776

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PLN02200 adenylate kinase family protein

Probab=97.19  E-value=0.00054  Score=50.78  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|+|+|||||||+...|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357799999999999999998875

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.19  E-value=0.00033  Score=50.69  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .--|+|+|++|+|||||++.|.+.
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.19  E-value=0.00034  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.19  E-value=0.00032  Score=50.24  Aligned_cols=22  Identities=41%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+.
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.0003  Score=54.50  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ++++||+|+|||||++.+.|-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-69
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-59
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-59
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-58
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-58
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-58
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-58
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-58
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-58
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-58
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-58
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-58
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-57
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-57
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-44
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		9e-41
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-38
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		9e-37
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-36
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-36
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-36
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		9e-36
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-35
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-35
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-35
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-35
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-35
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-34
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-34
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-34
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-34
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-33
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-33
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-33
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-33
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-33
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-33
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-32
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-32
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-32
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-32
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-32
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		7e-32
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		7e-32
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-32
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-32
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-31
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-31
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-31
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-31
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-31
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-31
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-31
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-31
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-31
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-31
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		9e-31
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-30
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-30
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-30
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-30
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-30
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-30
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-30
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-29
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-29
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-29
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		9e-29
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-28
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-28
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-28
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		7e-28
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-28
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-27
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-26
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-26
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-25
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-24
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-23
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-23
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-23
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-22
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-22
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-22
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-22
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-22
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-22
1byu_A	216	Canine Gdp-Ran Length = 216		2e-22
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-22
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-22
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		9e-22
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		9e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-21
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-21
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-21
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-21
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-21
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-21
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		5e-21
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		8e-21
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-20
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-20
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-19
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		7e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-18
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-18
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-18
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-18
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-18
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-18
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-18
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		6e-18
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-18
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-18
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-18
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		8e-18
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-18
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		9e-18
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-17
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-17
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-17
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-17
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-17
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-16
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-16
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-16
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-16
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-16
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-16
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-16
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		9e-16
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-15
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-15
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-15
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		7e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		8e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-14
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-14
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-14
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		5e-14
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		6e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		9e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-13
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-13
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-13
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		6e-13
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		6e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		6e-13
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-12
1mh1_A	186	Small G-Protein Length = 186		2e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		4e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		7e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		6e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		6e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		7e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		7e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		8e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		9e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		9e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		9e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-09
2kb0_A	178	Cdc42(T35a) Length = 178		2e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		6e-09
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		6e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		6e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-07
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-07
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-07
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-07
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-06
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-06
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-04

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  256 bits (655), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 141/177 (79%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRG       +D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEIA+RL  V P+
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  223 bits (568), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 133/178 (74%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           +++K  Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+I
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
           WDTAGQERYHSLAPMYYRG       YDIT+ ++F RAK WV+ELQRQ +P++++ L  N
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTG 181
           K DL  KR V+ EE + YA +N L F+ETSAK+A NVN+LF  IAK+L +  P    G
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  223 bits (568), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 126/162 (77%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 63  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 125/162 (77%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTI AAF TQ + L++ T+KF+IWDTAGQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 125/162 (77%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q KLVLLG+   GK+SLVLRFVKGQF ++QESTIGAAF TQ + L++ T+KF+IWDTAG 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ERYHSLAPMYYRG       YDIT+ D+F RAK WV+ELQRQ +PN+++ L  NK DL  
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KR V+ +E + YA +N L F+ETSAK+A NVNE+F  IAK+L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  219 bits (559), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  219 bits (558), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/166 (62%), Positives = 127/166 (76%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 126/166 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAG ERYHSLAPMYYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 125/166 (75%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAP YYRG       YDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 63  TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F ETSAK++ NVNE+F  IAK+L
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 116/164 (70%), Gaps = 3/164 (1%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD-LEE 129
           R+ SLAP YYR        YD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D L+E
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 130 --KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             +RKV  EEGE  A+E GL F ETSAK+  NVN++F  I +++
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 108/167 (64%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       KF IWDTAGQ
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+HSLAPMYYRG       YDIT  DSF   KKWV+EL+  G  N++M +  NK DL +
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            R+V  ++ + YA+  G   +ETSAK+A N+ ELF  I++++  ++P
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 105/162 (64%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       KF IWDTAGQ
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG       YDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            R+V   + + YA      F+ETSAK+A N+NELF EI++R+
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 104/162 (64%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWDTAG 
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG       YDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 66  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            R+V   + + YA      F+ETSAK+A N+NELF EI++R+
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 103/162 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  +E E YA+  G     TSAK    + ELF ++ KR+ E
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 103/162 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDIT  D+F     W+++ ++  N N+++ L+ NK DLE +R
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           +VK EEGE +A+E+GL F+ETSAK+A NV E F   AK + E
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + D   STIG  F  + +SL   T+K  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  DSF+  K+W+QE+ R    N+   LV NK DL  KR
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V ++EG   A  +G+ F+ETSAK+A+NV + F+    EI KR+
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 105/162 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           ++  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L E
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 102/162 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+ A+F T+ L++    +   IWDTAGQER
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  +E E YA+  G     TSAK    + ELF ++ KR+ E
Sbjct: 142 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 102/162 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+ A+F T+ L++    +   IWDTAGQER
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR        YDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  +E E YA+  G     TSAK    + ELF ++ KR+ E
Sbjct: 128 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 104/160 (65%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAGQER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 68  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 102/160 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 16  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+ +SF +  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 76  FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR 135
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 136 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 104/160 (65%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAG ER
Sbjct: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 75  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L 
Sbjct: 135 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 101/160 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            VK EEGE +A+E+GL F+ETSAK+A NV E F   AK +
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 103/160 (64%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAG ER
Sbjct: 8   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 68  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 128 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 103/161 (63%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++  +WDTAG ER
Sbjct: 18  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 78  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L 
Sbjct: 138 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 178

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 1/180 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK-LHTESHG 190
            V  +E   +A++N LSF+ETSA  + NV E F  I   +  +   +Q   +  H ES G
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPG 186

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 96/160 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTS++ RF    F +  +STIG  F ++ L L+E  ++  +WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R        YDIT+  SFE   KW+Q++  +   ++I+ LV NK DL + R
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           KV  EEG   AQE    F ETSAK+ HN+  LF + A +L
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 97/160 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +A+ENGL FLE SAK+  NV + F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR        YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGM 182
           +V  +  E +++   + +LETSAK + NV +LF ++A RL  ++ +RQ  +
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL--ISEARQNTL 196

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 97/156 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 97/156 (62%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 96/160 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQ R
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 92  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +A+ENGL FLE SAK+  NV + F E AK++
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQE 70
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + L N   IK  IWDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           RY ++   YYRG       YDIT  +SFE  +KW++EL+   + N+++ LV NK DL+  
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
           R + + +   YA++  L+F+ETSA  A NV   F+++   +  V   +Q
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQ 177

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 2/184 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF K +F    +STIG  F T+ L +    IK  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGG 191
            V  EE + +AQEN L F ETSA ++ NV++ F E+   + +     Q  M L   S  G
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQ--MDLGDSSANG 192
Query: 192 GRRG 195
              G
Sbjct: 193 NANG 196

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +S+   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V N   + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +S+   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V N   + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 40/197 (20%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL----------------- 54
           K VLLG+   GK+S+VLR  K  F +   +TIGA+F T V++L                 
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 55  --------------------NEVTIKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITS 94
                               N   IKFDIWDTAGQERY S+ P+YYRG       +DI++
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95  MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154
            ++ +RAK WV +L+     N I+ LVANK+D + K +V   E + YAQ+N L F++TSA
Sbjct: 129 SNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KSAHNVNELFYEIAKRL 171
           K+  N+  +FY +A+ +
Sbjct: 186 KTGTNIKNIFYMLAEEI 202

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRLA 172
            V     + +A   G+ FLETSAK+A NV + F     EI KR+ 
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRLA 172
            V     + +A   G+ FLETSAK+A NV + F     EI KR+ 
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 96/156 (61%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E   +A++NGLSF+ETSA  + NV   F  I
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 95/164 (57%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK  L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKR 170
            V     + +A   G+ FLETSAK+A NV + F     EI KR
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 101/173 (58%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           + R S  +   KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K
Sbjct: 12  VPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             IWDTAGQER+ ++   YYRG       YD+T  +SF   K W+QE+ R     ++  L
Sbjct: 72  LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           V NK DL++KR V+ +  + +A  N + FLETSA  + NV + F  +A+++ E
Sbjct: 132 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-ESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++  K++L+GD G GKT L++RF  G F      ST+G  F  +VL ++ V +K  +WDT
Sbjct: 8   DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126
           AGQER+ S+   YYR        YD+T+  SF+  + W+ E+      ++ + L+ NKVD
Sbjct: 68  AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
              +R VK E+GE  A+E GL F+ETSAK+  NV+  F  IAK L
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 97/162 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V+ +  + +A  N + FLETSA  + NV + F  +A+++ E
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 97/162 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V+ +  + +A  N + FLETSA  + NV + F  +A+++ E
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YDIT   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   T+K  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   +PN+++ L  NK DL+ +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AEVNPSR 178
           +V   E   +AQEN L FLETSA +  NV E F + A+ +       E++P R
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPER 199

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV  K DL  K+
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY----EIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F     EI KR+
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 94/164 (57%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N   K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    +K  IWDTA
Sbjct: 23  NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           G ERY ++   YYRG       +D+T   ++   ++W++EL       +++ LV NK DL
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            + R+V  EE  ++A+ NGL FLETSA  + NV   F  + K +
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 94/164 (57%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N   K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    +K  IWDTA
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           G ERY ++   YYRG       +D+T   ++   ++W++EL       +++ LV NK DL
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            + R+V  EE  ++A+ NGL FLETSA  + NV   F  + K +
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT   +F   K+W + +    N    + LV NK D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D+ E 
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           R V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 127 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AEVNPSR 178
           +V   E   +AQEN L FLETSA +  NV E F + A+++       E++P R
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPER 184

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+T   +F   K+W + +    N    + LV NK D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 95/160 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 95/160 (59%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 91/156 (58%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF   +F    +STIG  F T+ + +    IK  IWDTAG ER
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            V  +E + +A EN + F ETSA ++ NV++ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 97/160 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E   +AQEN L FLETSA +  +V E F + A+++
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD   GKT +V RF  G F + Q STIG  F  + L +    +K  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR        YDIT   SF     W++++++    N++  L+ NK DL E R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E +  A+  + L  +ETSAK + NV E F  +A  L
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           + +++++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
           GQER++S+   YYR        YDIT  ++F+   KW++ + +  + +  + LV NK+D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 128 EEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIA 168
           E  R++  ++GE +AQ+  G+ F E SAK   NV+E+F ++ 
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 185

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 96/160 (60%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAG ER
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRG       YDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E   +AQEN L FLETSA +  +V E F + A+++
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG       YD+TS +SF   K+W+ E+  Q   ++   LV NK D  E++
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERK 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELF---YEIAKRLAEVNPSRQ 179
            V+ E+   +A + G+   ETSAK   NV E+F    E+  R  + N ++Q
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 169
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  IA+
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 169
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  IA+
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 169
           ++ NK+D  E R+V  +  + +   +N + + ETSAK A NV + F  IA+
Sbjct: 122 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN-LIMFLVANKVDLEE 129
           R+ +L P YYRG       YD+T  D+F +   W+ EL+     N ++  LV NK+D +E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            R+V   EG  +A+++   F+E SAK+   V   F E+ +++ +
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAG ER+ SL   +YRG       +D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 120 LVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFYEIAK 169
           ++ NK+DL E R+V  +  + +   +N + + ETSAK A NV + F  IA+
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 91/168 (54%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           N +   KL+++G+   GKTS + R+    F     ST+G  F  + +  +E  +K  IWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERY ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK 
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           D+EE+R V  E+G+L A++ G  F E SAK   +V + F  +   + +
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 86/162 (53%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+   GKTS + R+    F     ST+G  F  + +  ++  IK  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDI + +SF   + W  +++     N  + LV NK DLE++R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  E+G   A + G  F E SAK   NV ++F  +   + E
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 100/181 (55%), Gaps = 18/181 (9%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD---- 62
           KNI +K+++LGD G GKTSL+ R+V  ++    ++TIGA F T+     EVT+  D    
Sbjct: 6   KNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK-----EVTVDGDKVAT 59
Query: 63  --IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLI 117
             +WDTAGQER+ SL   +YRG       YD+T+  SFE  K W  E     N   P   
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 118 MFLV-ANKVDLEEKRKVKNEEG--ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174
            F++  NK+D EE +K+ +E+   EL      +    TSAK+A NV+  F EIA+   + 
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
Query: 175 N 175
           N
Sbjct: 180 N 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 87/168 (51%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           N +   K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERY ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           D+E++R V +E G   A   G  F E SAK   NV + F  +   + E
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 85/162 (52%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRG       YDIT+ +SF   + W  +++     N  + LV NK D E++R
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V +E G   A   G  F E SAK   NV + F  +   + E
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 72  YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEE 129
           +  S+   YYR        YD+T+M SF     W++E ++    N I   LV NK DL  
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN---VNELFYEIAKRL 171
             +V  +  + +A  + +   ETSAK+ ++   V  +F  +A +L
Sbjct: 142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 69/115 (60%)
Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72
           L+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73  HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
            ++   YYRG       YD+T  +SF   K+W+QE+ R  + N+   LV NK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE+Y  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S K++ +K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SFE    W +E        +P    F+V
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEV 174
             NKVD +E R+V  EE + +  ENG   +LETSAK   NV   F E  +++  V
Sbjct: 122 LGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F      T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72  YH-SLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEE 129
           +  S+   YYR        YD T+  SF     W++E ++    N I   LV NK DL  
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHN---VNELFYEIAKRL 171
             +V  +  + +A  +     ETSAK+ ++   V  +F  +A +L
Sbjct: 151 AIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F      T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAG
Sbjct: 4   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRG       +  T  +SFE    W +++  +   ++   LV NK+DL 
Sbjct: 64  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLL 122
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170
           +   +KNEE E  A+   L F  TS K   NV+E+F  +A++
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
           A      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
           ++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG +G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 65
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  E+G+ L  Q N  +FLE+SAKS  NVNE+FY++ +++
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 120
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           + RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 121 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAG E++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 121
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 122 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 4   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 63
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F++
Sbjct: 64  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 123
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
             NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E  +R+
Sbjct: 124 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IK
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAG E++  L   YY         +D+TS  +++    W ++L R    N+ + L
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVL 119
Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 120 CGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFLV 121
           DTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F++
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121
Query: 122 -ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
             NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E  +R+
Sbjct: 122 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           ++ K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   I
Sbjct: 5   SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN---PNLIMFL 120
           WDTAGQER+ SL   +YRG       + +    SF+    W +E     +   P    F+
Sbjct: 65  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 121 V-ANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           +  NK D++E R+V  EE + + ++NG   + ETSAK + NV   F E  +R+
Sbjct: 125 ILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  E+G+ L  Q N  +FLE+SAKS  NVNE+FY++ +++
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL GD   GK+S ++R  K +F +   +T+G  F  + L ++       +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL---- 127
           + S+A  Y+R        YD+T   SF   ++WV  ++   +  + + LV NK D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 128 --EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             E ++ V    GE  A   G  F ETSAK   N+ E    +A+ +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
            E++  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 123
Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           + RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 124 D-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F D  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  E+G+ L  Q    +FLE+SAKS  NVNE+FY++ +++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
           A      +Q KLVL+GD GTGKT+ V R + G+      +T+G      V   N   IKF
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
           ++WDTAGQE++  L   YY         +D+TS  +++    W ++L R    N+ + L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125
Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            NKVD+++ RKVK +    + ++N L + + SAKS +N  + F  +A++L
Sbjct: 126 GNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 124
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
           KVK +    + ++N L + + SAKS +N  + F  +A++LA  NP
Sbjct: 125 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLAG-NP 167

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 123
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
           KVK +    + ++N L + + SAKS +N  + F  +A++LA  NP
Sbjct: 124 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLAG-NP 166

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD GTGKT+ V R + G+F     +TIG          N   IKFD+WDTAG E+
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +  L   YY         +D+TS  +++    W ++L R    N+ + L  NKVD++E R
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE-R 131
Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           KVK +    + ++N L + + SAKS +N  + F  +A++LA
Sbjct: 132 KVKAKTITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLA 171

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK--RLAEVNPSRQTGMKLHTES 188
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++ +  R  ++  S++   K   +S
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKS 194
Query: 189 HGGGRRGFCC 198
                R  CC
Sbjct: 195 LAKRIRERCC 204

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV  ++      +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++  +Y +        Y IT+  +F   +   +++ R +   ++ M LV NK DLE++
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 RKVKNEEGE-LYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  E+G+ L  Q    +FLE+SAKS  NVNE+FY++ +++
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++ + +
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 19/180 (10%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N             + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAGQER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE----LFYEIAKRLAE 173
             L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +    L   I KR+ +
Sbjct: 146 --LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 98/161 (60%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R        + IT M+SF     + +++ R + + N+   LV NK DLE+K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE +  A++  ++++ETSAK+  NV+++F+++ + +
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 15/164 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ--VLSLNEVT--------IK 60
           +K + LGD G GKTS++ ++  G+F     +T+G  F  +  V   N           I 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+T+  SF   + W+ +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161
             L  NK DLE++R VK EE    A++ G+ + ETSA +  N++
Sbjct: 132 --LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAG 68
           Q+K+V+LGD  +GKTSL   F +  F    + TIG  FF + ++L   + +   IWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKW---VQELQRQGNPNLIMFLVANKV 125
           Q     +   Y  G       YDIT+  SFE  + W   V+++  +     ++ LV NK+
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 178
           DLE  R +K E+   + QENG S    SAK+  +V   F ++A  +  +  ++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE    + ++++R + + ++ M LV NK DL   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  ++ +  A+  G+ F+ETSAK+   V++ FY + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           Y ++   Y+R        + IT  +SF    ++ +++ R       + + +V NK DLEE
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +R+V  EE    A+E G+ ++ETSAK+  NV+++F+++ + +
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+ L+   ++ DI DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           Y ++   Y+R        + IT  +SF    ++ +++ R       + + +V NK DLEE
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +R+V  EE    A+E G+ ++ETSAK+  NV+++F+++ + +
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQF---------FDFQESTIGAAFFTQVL---SLNEVT 58
           +KL+ LGD G GKT+ + R+   +F          DF+E  +   + TQ     S     
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV--VYDTQGADGASGKAFK 69
Query: 59  IKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPN 115
           +   +WDTAG ER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+
Sbjct: 70  VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 129
Query: 116 LIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
           ++  L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 130 IV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W+ +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V++ + +  A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V++ + +  A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE    + ++++R + + ++ M LV NK DL   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PS 123
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V  ++ +  A+  G+ F+ETSAK+   V++ FY + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD+  GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 5   IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA-FFTQVLSLNEVTIKFDIWD 65
           + +  K+ L+GD G GKT+ + R + G+F     +T+GA       L      IKF++WD
Sbjct: 8   RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQE+   L  +YY G       +D+TS  + +   +WV+E Q        + + ANK+
Sbjct: 68  TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           D++ ++K+  +      +     + E SAK+AHN    F  +A+
Sbjct: 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AG 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V++ + +  A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y ++   Y R        + I +  SFE   ++ ++++R + + ++ M LV NK DL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R V++ + +  A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W  +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQG---NPNLI 117
             +WDTAG ER+ SL   ++R        +D+TS  SF   + W  +LQ      NP+++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160
             L+ NK DL ++R+V   +    A++ G+ + ETSA +  NV
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 66  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 8   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 66
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 67  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 125
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 182

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 123
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 5   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 122
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 170
            +            +  V++EEG   A   +   +LE SAK+   V E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDL 141
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 170
            +            +  V++EEG   A   +   +LE SAK+   V E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K+ +VKL + G  G GK++LV+RF+  +F    + T+ + +  Q  ++++  +  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVAN 123
           AGQE        + R        YDIT   SFE     K  + E+++  N  LI  LV N
Sbjct: 84  AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI--LVGN 140
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIAKRL 171
           K DL+  R+V  EEGE  A E   +F E SA +   N+ E+FYE+ + +
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++ F K +F +    T+   +   +  ++   ++  +WDTAG
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + S DS E   +KWV E+ +   PN+ + LVANK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDL 141
Query: 128 EEKRKVKNEEGELYAQE-------------NGLSFLETSAKSAHNVNELFYEIAKRLA 172
                V+ E   +  +                  +LE SAK+   V E+F E A R A
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRAA 198

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 119
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +   +F      T+   F   V +++   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ YRG       + + S  S+E   KKW+ EL+R   PN+ + LV  K+DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127
Query: 130 KRK--------VKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
            +         + + +G EL  Q    +++E S+K+  NV  +F    K +  + P R+ 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV--LQPPRRK 185
Query: 181 GMKLHTESHGGGRRGFC 197
            +    ++H   RR  C
Sbjct: 186 EVPRRRKNH---RRSGC 199

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ + G  G GK+SLVLRFVKG F +    T+   +  QV+S ++      I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLI-MFLVANKVDLEE 129
           + ++  +           Y ITS  S E  K   +++ + +G+   I + LV NK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
            R+V++ E E  A+    +F+ETSAK  HNV ELF E+
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V+LG    GKTSL  +FV+G+F +  + T+   + +++++L +      + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           Y  L   +  G       Y +TS+ SF+  +   Q+L    G   + + LV NK DL  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
           R+V+  EG+  A+  G +F+E+SA+       +F ++ + +A V  S
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 170
            +            +  V++EEG   A   +   +LE SAK+   V E+F E+A R
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD+  GKT L++ F K QF      T+   +   +  ++   ++  +WDTAG
Sbjct: 4   IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y    P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 63  QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 121
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK  EG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAK-----RLAEVNPSRQTG 181
           A+  G+ ++ETSAK+   V + FY + +     +L ++NP  ++G
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESG 178

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)
Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           M++    +I+ KLV++GD   GKT L++   KGQF +    T+   +   V  ++   ++
Sbjct: 1   MSQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVE 59
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQR--QGNPNLI 117
             +WDTAGQE Y  L P+ Y         + I   DS E  + KW+ E+    QG P   
Sbjct: 60  LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP--- 116
Query: 118 MFLVANKVDL------------EEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELF 164
           + LV  KVDL            E ++ V ++EG+  A + G + + E SAK+ + V E+F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
Query: 165 YEIAKR 170
            E A R
Sbjct: 177 -EAATR 181

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+   +   +  ++   ++  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
            E Y  L P+ Y         + I S DS E   +KW  E+ +   PN+ + LV NK DL
Sbjct: 66  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 124
Query: 128 E------------EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLA 172
                        ++  VK EEG   A   G   ++E SAK+   V E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 15/174 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V+ ++  T+   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDL-E 128
            Y+ L P+ YRG       + + S  S+E   KKW+ EL+    P + + LV  K+DL +
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLRD 124
Query: 129 EKRKVKNEEG----------ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +K+ +K+  G          EL      + +LE S+K+  NV  +F + A R+A
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRVA 177

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT L++ +    F      T+   F   V+ +N  T+   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRG       + + S  S+E  +KKW+ EL+    P + + LV  K+DL +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRD 126
Query: 130 KRK----------VKNEEGELYAQENGL-SFLETSAKSAHNVNELF 164
            ++          +   +GE   +  G  +++E S+KS  NV  +F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL-QRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    +L    G   + + LV NK DL  +
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           VK+VL+GD G GKTSL++ F  G F +    T+   +    L +    +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P++Y         +D+TS +SF+    +W  E+       + + +V  K DL +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRK 152
Query: 130 KRKVKNE------------EGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
            + + N+             G+  A+  G +++LE SA+   NV+ +F E A+
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+ +LG    GK+SL ++FV+GQF D  + TI   F T+++++N       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEK 130
           Y      Y          Y +TS+ SFE  K    + L   G   + + LV NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           R +  EEG+  A+    +FLE+SAK      ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +    F      T+   F   V+ ++  T+   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y+ L P+ YRG       + + S  S+E  AKKW+ EL R   P + + LV  K+DL +
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
Query: 130 KRK-----------VKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
            ++             N+  EL        ++E S+K+  NV  +F
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F++  F    + TI  ++  Q + +++   + DI DTAGQE + ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + +T   SFE   K+ +++ R +      M L+ NK DL+ +R+V  EEG+  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAK 169
           A++  ++++E SAK   NV++ F+E+ +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E+ +  DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ F+ETSAK+   V++ FY + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQDL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ F+ETSAK+   V++ FY + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 20/170 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           VK VL+GD   GKTSLV+ +       +    I  AF  F+ V+S++   ++  + DTAG
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTN---GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDL 127
           Q+ +  L P+ Y         + + S  SF+  ++KWV E+ R   P   + LV  + DL
Sbjct: 78  QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDL 136
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELF 164
            E            ++ V  E  +L A+E    S++E SA +  N+ E+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAG E Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGHEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE    + ++++R + + ++ M LV NK DL   R V  ++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ F+ETSAK+   V++ FY + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K +L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAK 169
           A+  G+ ++ETSAK+   V + FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + +I  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV N+ DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + +I  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG+E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F +  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F D  + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEIAK 169
           A +  + ++ETSAK    NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F++  F    + TI  ++ T++ S++ +  + DI DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83  XXXXXXXYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I    SF E  K + Q L+ +   +  + LV NK DLE +R+V   E   +
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAK 169
              + +++ E SAK   NV+E F ++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVR 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E  +  DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXL-LDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SFE   ++ ++++R + + ++ M LV NK DL   R V++ + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+  G+ ++ETSAK+   V + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQE Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  + I +  SF     + ++++R + + ++ M LV NK DL   R V  ++    
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK 183
           A+  G+ F+ETSAK+   V + FY + + +      RQ  MK
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI------RQYRMK 187

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F D  + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEIAK 169
           A +  + ++ETSAK    NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K+SLVLRFVKG F D    TI   +  QV+S ++      I DT G  ++ ++  +    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83  XXXXXXXYDITSMDSFERAKKWVQEL-QRQGN-PNLIMFLVANKVDLEEKRKVKNEEGEL 140
                  + +TS  S E      + + Q +G+  ++ + LV NK D E +R+V   E + 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 141 YAQENGLSFLETSAKSAHNVNELFYEI 167
            AQE   +F+ETSAK  +NV ELF E+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 23/188 (12%)
Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFD 62
           SN+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELS 58
Query: 63  IWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLV 121
           +WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV
Sbjct: 59  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLV 117
Query: 122 ANKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEI 167
             K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+  
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH-- 175
Query: 168 AKRLAEVN 175
              LA VN
Sbjct: 176 VATLACVN 183

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++FV G F +  + TI   F+ + + ++      +I DTAG E++ S+  +Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y + +  SF+  K    ++ R +    + + LV NKVDLE +R+V + EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 AQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           A+E G  F+ETSAKS   V+ELF EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F    + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 89
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEIAK 169
           A +  + ++ETSAK    NV++ F+++ +
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
           N+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  +
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 139
Query: 123 NKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEIA 168
            K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+   
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH--V 197
Query: 169 KRLAEVN 175
             LA VN
Sbjct: 198 ATLACVN 204

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 23  KTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F +  F    + TI  ++       N+  I  D+ DTAGQE + ++   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRT 84
Query: 83  XXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELY 141
                  Y +T   SFE   ++ Q + R +   +  M LVANKVDL   RKV  ++G+  
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 142 AQENGLSFLETSAKSAH-NVNELFYEIAK 169
           A +  + ++ETSAK    NV++ F+++ +
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDI 63
           N+N++ K+V++GD   GKT+L+  F K     F E+ +   F  +T    ++   I+  +
Sbjct: 19  NQNVKCKIVVVGDSQCGKTALLHVFAKDC---FPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y         +DI+  ++ +   KKW  E+Q +  PN  M LV 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 134
Query: 123 NKVDL------------EEKRKVKNEEGELYAQENG-LSFLETSA-KSAHNVNELFYEIA 168
            K DL              +  V  ++G   A++ G  +++E SA +S ++V ++F+   
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH--V 192
Query: 169 KRLAEVN 175
             LA VN
Sbjct: 193 ATLACVN 199

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E + + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 177 SRQ 179
           +RQ
Sbjct: 182 TRQ 184

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 185
Query: 177 SRQ 179
            ++
Sbjct: 186 VKK 188

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFV-KG-QFFDFQESTIGAAFFTQVLSLNEVTIKFDIW- 64
            ++ K+ ++G+   GK++L+  F  KG +F      T G       +++ + T+  +++ 
Sbjct: 18  TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 65  -DTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPN----LIMF 119
            DTAG + Y      Y+ G       +D++SM+SFE  K W  EL +   P+    L   
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 120 LVANKVDLEEKR-KVKNEEGELYAQENGLSFLETSA-KSAHNVNELFYEIA 168
           LVANK DL  +R +V+ +  + +A  N L F + SA     + +  F  IA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
Query: 177 SRQ 179
            ++
Sbjct: 184 VKK 186

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAG 68
           ++VLLGD G GKTSL   F   Q  D  E  +G   + + L+++      +  D W+   
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDL 127
            ++  S      +G       Y I    SFE A +   +L+R    + + + LV NK DL
Sbjct: 65  LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
              R+V  EEG   A      F+ETSA   HNV ELF
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 131
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E + + +LE SA +   +  +F E
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  S+E  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E + + +LE SA +   +  +F E
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIK 60
           +  N    +K+V++GD   GKT L+L F KG+      + +   F  F+ V+        
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEFI 72
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMF 119
             +WDTAGQE Y  L P+ Y         + + +  SF+  + KW  E++   +    + 
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV- 131
Query: 120 LVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
           LV  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIK 60
           +  N    +K+V++GD   GKT L+L F KG+      + +   F  F+ V+        
Sbjct: 15  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI---PTAYVPTVFENFSHVMKYKNEEFI 71
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFER-AKKWVQELQRQGNPNLIMF 119
             +WDTAGQE Y  L P+ Y         + + +  SF+  + KW  E++   +    + 
Sbjct: 72  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV- 130
Query: 120 LVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164
           LV  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F
Sbjct: 131 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +             +   +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
Query: 177 SRQ 179
            ++
Sbjct: 182 VKK 184

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   P+  + LV  K+DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 121
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GK  L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +           T+   +   V+ ++   +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  + KW  E+ R   PN  + LV  K+DL +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD+  GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 S 177
Sbjct: 180 P 180

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+
Sbjct: 4   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 63
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
           W+  G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV 
Sbjct: 64  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           NK DL   R+V   EG   A      F+ETSA   HNV ELF  I +++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDI 63
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+
Sbjct: 35  NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVA 122
           W+  G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV 
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           NK DL   R+V   EG   A      F+ETSA   HNV ELF  I +++
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 12  KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
           G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV NK D
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           L   R+V   EG   A      F+ETSA   HNV ELF  I +++
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 214
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SF   + KW  E+ R   PN  + LV  K+DL +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 273
Query: 130 KR------------KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 181
Query: 177 S 177
Sbjct: 182 P 182

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 182
Query: 177 S 177
Sbjct: 183 P 183

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 65
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 182
Query: 177 S 177
Sbjct: 183 P 183

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 66
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 176

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 S 177
Sbjct: 180 P 180

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 12  KLVLLGDMGTGKTSLVLRFVK-GQFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++      I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVD 126
           G+  +  L     +        Y IT   SFE+A +   +L+R +   ++ + LV NK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           L   R+V   EG   A      F+ETSA   HNV ELF  I +++
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 63
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 180
Query: 177 S 177
Sbjct: 181 P 181

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 177

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K V++GD   GKT L++ +    F +    T+   +   V ++        ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAG 75
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + +  SF+  K +WV EL+    PN+   L+  ++DL
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDL 134
Query: 128 EEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
            +  K            +  E+G+  A+E G   ++E SA +   +  +F E
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 S 177
Sbjct: 180 P 180

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 S 177
Sbjct: 180 P 180

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTA 67
           + KLVL+GD+  GKT+++    K  +    E+ +   F  +T  L   E  ++  +WDT+
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCY---PETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVD 126
           G   Y ++ P+ Y         +DI+  ++ + A KKW  E+     P+  + L+  K D
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 142
Query: 127 L------------EEKRKVKNEEGELYAQENGLS-FLE----TSAKSAHNV 160
           L            +++  +  E+G   A++ G   +LE    TS KS H++
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 72
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 189
Query: 177 SRQ 179
Sbjct: 190 PEP 192

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 186
Query: 177 S 177
Sbjct: 187 P 187

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V    E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 S 177
Sbjct: 180 P 180

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 35/199 (17%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +    F      T+   +   V+ ++   +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 71  RYHSLAPMYYRGXXXXXXXYDIT-------------------SMDSFERAK-KWVQELQR 110
            Y  L P+ Y          DIT                   S  SFE  + KW  E+ R
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 111 QGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKSA 157
              PN  + LV  K+DL + +             +   +G   A+E G + +LE SA + 
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 158 HNVNELFYEIAKRLAEVNP 176
             +  +F E  + +    P
Sbjct: 184 RGLKTVFDEAIRAVLCPPP 202

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAG 68
           +K V++GD   GKT L++ +   +F       + A F  +   + +        ++DTAG
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDL 119
Query: 128 EE------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
            +            ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLRDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GK  L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 186
Query: 177 S 177
Sbjct: 187 P 187

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 66
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 183
Query: 177 S 177
Sbjct: 184 P 184

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +       T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE 166
                       ++ +  E  E  A++   + ++E SA +   +  +F E
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGLE 62
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ Y         + + S  SFE  K KWV E+     P     LV  ++DL +
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 130 ------------KRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
                       ++ +  E  E  A++   + ++E SA +   +  +F E    LA + P
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAALEP 179
Query: 177 SRQ 179
Sbjct: 180 PEP 182

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 4   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 62  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 116
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL   R+V  +EG   A      F+ETSA   HNV  LF  + +++
Sbjct: 117 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL   R+V  +EG   A      F+ETSA   HNV  LF  + +++
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIK-FDIWDTAG 68
           K++LLG  G GK++L   F  G   D  E+      + + + ++  E ++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKV 125
                 H +A             Y +T   SFE+A +   +L+R +   ++ + LV NK 
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKS 121
Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL   R+V  +EG   A      F+ETSA   HNV  LF  + +++
Sbjct: 122 DLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
           K++LLG+ G GK++L   F   Q  +  E       + + + ++  EVT I +DIW   D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  + H L              + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 74  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 127
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVT-IKFDIW---D 65
           K++L+G+ G GK++L   F   Q     E       + + + ++  EVT + +DIW   D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  R H L     +        + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 85  AGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 138
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLVLRF--VKGQFFDFQESTIGAAFFTQVLSLNEVT-IKFDIW---D 65
           K++L+G+ G GK++L   F  ++G      E++        ++   EVT I +DIW   D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP--NLIMFLVAN 123
             G  + H L              + +T   SF +  + +  L R G P  +L + LV N
Sbjct: 64  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRL-RAGRPHHDLPVILVGN 117
Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164
           K DL   R+V  EEG   A       +ETSA   HN  ELF
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVG 374
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 431
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 432 KQDLPDAMK 440

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  +WD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E +K  +  L    Q QG P L++    NK 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 D----LEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVN 161
           D    L+EK  +  E+  L A Q+  +     S K   N++
Sbjct: 135 DLPGALDEKELI--EKMNLSAIQDREICCYSISCKEKDNID 173

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  IWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E ++  +  L    Q QG P L++    NK 
Sbjct: 78  PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 D----LEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVN 161
           D    L+EK+ +  E+  L A Q+  +     S K   N++
Sbjct: 135 DLPNALDEKQLI--EKMNLSAIQDREICCYSISCKEKDNID 173

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVG 64
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 65  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 121
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 122 KQDLPDAMK 130

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           GQ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 66  GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G  F  + ++   VTIK  +WD  GQ
Sbjct: 31  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQ 86
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQEL----QRQGNPNLIMFLVANKV 125
            R+ S+   Y RG        D    +  E +K  +  L    Q QG P L++    NK 
Sbjct: 87  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 126 D----LEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVN 161
           D    L+EK  +  E+  L A Q+  +     S K   N++
Sbjct: 144 DLPGALDEKELI--EKMNLSAIQDREICCYSISCKEKDNID 182

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
           L +  K
Sbjct: 113 LPDAMK 118

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVD 126
           +   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQD 112
Query: 127 LEEKRK 132
           L +  K
Sbjct: 113 LPDAMK 118

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++ LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
              L   YY G        D    D  + A+   QEL R  N     + I+ + ANK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 EEKRK 132
            +  K
Sbjct: 114 PDAXK 118

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N ++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVG 65
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVAN 123
           G ++   L   YY G        D    D  + A+   QEL R  N     + I+ + AN
Sbjct: 66  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 122
Query: 124 KVDLEEKRK 132
           K DL +  K
Sbjct: 123 KQDLPDAMK 131

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  G
Sbjct: 2   MEMRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGF-NVETVTYKNVKFNVWDVGG 56
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
            ++   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK
Sbjct: 57  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 VDLEEKRK 132
            DL +  K
Sbjct: 114 QDLPDAMK 121

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +++++++LG    GKT+++ +   GQ      +TI    F  V ++    +KF++WD  G
Sbjct: 1   MEMRILMLGLDAAGKTTILYKLKLGQSV----TTIPTVGF-NVETVTYKNVKFNVWDVGG 55
Query: 69  QERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANK 124
            ++   L   YY G        D    D  + A+   QEL R  N     + I+ + ANK
Sbjct: 56  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 VDLEEKRK 132
            DL +  K
Sbjct: 113 QDLPDAMK 120

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
           GQ+R  SL   YYR         D         A++ +Q +  +    N +  + ANK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 127 LEE 129
           L E
Sbjct: 130 LPE 132

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDT 66
           KL ++G+ G+GKT+L+ +  K +  D   Q +T+G     +  Q+    +  +  ++WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKV 125
           AG+E ++S  P +          YD++   +  +  K W+  ++ + + + ++ LV   +
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 126 DLEEKRKVK 134
           D+ ++++ K
Sbjct: 123 DVSDEKQRK 131

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIG---AAFFTQVLSLNEVTIKFDIWDT 66
           KL ++G+ G+GKT+L+ +  K +  D   Q +T+G     +  Q+    +  +  ++WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKV 125
           AG+E ++S  P +          YD++   +  +  K W+  ++ + + + ++ LV   +
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 126 DLEEKRKVK 134
           D+ ++++ K
Sbjct: 121 DVSDEKQRK 129

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVD 126
           GQ+R  SL   YYR         D         A++ +Q +  +       +LV ANK D
Sbjct: 70  GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 127 LEE 129
           L E
Sbjct: 130 LPE 132

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G  G GKT+++ +   G+      +TI    F  V ++    I F +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVETVQYKNISFTVWDVGGQD 55
Query: 71  RYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLV-ANKVDLEE 129
           R  SL   YYR         D         A++ +Q +  +       +LV ANK DL E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67
           N +++++++G  G GKT+++ +   G+      +TI    F  V  +    I F +WD  
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVI----TTIPTIGF-NVECVQYCNISFTVWDVG 69
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVD 126
           GQ+R  SL   YY          D         A++ +Q +  +    N    + ANK D
Sbjct: 70  GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 127 LEE 129
           L E
Sbjct: 130 LPE 132

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++++++G    GKTS++ +   G+      +TI    F  V ++    I F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTSILYKLKLGEIV----TTIPTIGF-NVETVEYKNISFTVWDVGGQ 71
Query: 70  ERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKV 125
           ++   L   YY+         D    D    A+   +EL +  N     N I+ + ANK 
Sbjct: 72  DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKH 128
Query: 126 DLEEKRKV 133
           DL +   +
Sbjct: 129 DLPQAMSI 136

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA- 67
           ++V L +LG  G GK++L ++F+  +F    +  +   + ++  +++   +   + DTA 
Sbjct: 20  LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 68  -----GQERYHSLAPMYYRGXXXXXXXYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA 122
                  ERY + A  +             +S    E      +E QR    ++   L+ 
Sbjct: 79  LDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR----SIPALLLG 134
Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEIAK 169
           NK+D+ + R+V   EG   A   G  F E SA     +V  +F+E  +
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-103
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-100
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-99
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-99
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-96
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	7e-85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	7e-85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-82
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-81
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-81
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	7e-81
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-80
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-80
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-80
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-79
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-79
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-78
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-77
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-75
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-74
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-74
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-73
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-73
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-73
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-73
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	9e-73
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-72
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-71
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-70
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-70
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-69
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-67
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-66
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-65
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-65
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-64
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-63
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-62
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-62
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-61
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-60
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-60
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-60
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	9e-60
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-54
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	9e-43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	5e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-41
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-40
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-39
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-38
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-28
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-24
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-20
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-18
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	5e-13
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	7e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-10
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-10
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	8e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	9e-10
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-09
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	7e-05
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	8e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	5e-04

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  295 bits (757), Expect = e-103
 Identities = 123/177 (69%), Positives = 148/177 (83%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA   NK+I  KLVLLGD+G GK+SLVLRFVK QF +FQESTIGAAFF+Q L++N+ T+K
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D+T+  SFERAKKWVQELQ QGNPN++M L
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
             NK DL + RKV  E+ + YAQENGL F+ETSAK+A NV E+FYEIA+RL  V P+
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  287 bits (737), Expect = e-100
 Identities = 83/177 (46%), Positives = 117/177 (66%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +    +   ++K+ LLGD G GK+S+V RFV+  F      TIGA+F T+ +       K
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F IWDTAGQER+HSLAPMYYRG+AAAV+VYDIT  DSF   KKWV+EL+  G  N++M +
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
             NK DL + R+V  ++ + YA+  G   +ETSAK+A N+ ELF  I++++  ++P 
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 190

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  284 bits (729), Expect = 1e-99
 Identities = 109/168 (64%), Positives = 134/168 (79%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L +
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  283 bits (727), Expect = 3e-99
 Identities = 76/166 (45%), Positives = 112/166 (67%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           +   ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAG ER+ +LAPMYYRG+AAA++VYDIT  ++F   K WV+EL++ G P++++ +  NK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL + R+V   + + YA      F+ETSAK+A N+NELF EI++R+
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  284 bits (730), Expect = 4e-99
 Identities = 76/203 (37%), Positives = 117/203 (57%), Gaps = 6/203 (2%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N   + KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++ 
Sbjct: 8   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 67

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
            +WDTAG ER+ SL P Y R +  AVVVYDIT+++SF++  KW+ +++ +   ++I+ LV
Sbjct: 68  QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AEVN 175
            NK DL +KR+V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L       + +
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187

Query: 176 PSRQTGMKLHTESHGGGRRGFCC 198
                 +KL          G C 
Sbjct: 188 REDMIDIKLEKPQEQPVSEGGCL 210

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  278 bits (714), Expect = 4e-97
 Identities = 73/170 (42%), Positives = 109/170 (64%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N   + KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + T++ 
Sbjct: 6   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 65

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLV 121
            +WDTAGQER+ SL P Y R +  AVVVYDIT+ +SF +  KW+ +++ +   ++I+ LV
Sbjct: 66  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            NK DL +KR+V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  277 bits (710), Expect = 1e-96
 Identities = 73/168 (43%), Positives = 110/168 (65%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           ++    K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQER+H+L P+YYR +  A++VYDIT  DSF++ K WV+EL++     + + +V NK+
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           DLE++R V  +E E YA+  G     TSAK    + ELF ++ KR+ E
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  254 bits (650), Expect = 6e-87
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 1/183 (0%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ-VLSLNEVTIK 60
                + +  K+ L+GD G GKT+ + R + G+F     +T+GA       L      IK
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
           F++WDTAGQE+   L  +YY GA+ A++ +D+TS  + +   +WV+E Q        + +
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
            ANK+D++ ++K+  +      +     + E SAK+AHN    F  +A+           
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

Query: 181 GMK 183
              
Sbjct: 183 SNV 185

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  251 bits (644), Expect = 1e-86
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 4/177 (2%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIW 64
           +   Q+K+V+LGD  +GKTSL   F +  F    + TIG  FF + ++L   + +   IW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW---VQELQRQGNPNLIMFLV 121
           D  GQ     +   Y  GA   ++VYDIT+  SFE  + W   V+++  +     ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSR 178
            NK+DLE  R +K E+   + QENG S    SAK+  +V   F ++A  +  +  ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  248 bits (635), Expect = 7e-85
 Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 2/173 (1%)

Query: 1   MARTSNKNI--QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           +    +++     K+VL+G+ G GKT+L+ RF + +F     +TIG  F T+ + L    
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
           +K  IWDTAG ERY ++   YYRGA  A++V+D+T   ++   ++W++EL       +++
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            LV NK DL + R+V  EE  ++A+ NGL FLETSA  + NV   F  + K +
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  248 bits (635), Expect = 7e-85
 Identities = 71/182 (39%), Positives = 108/182 (59%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTESHGG 191
            V  +E   +A++N LSF+ETSA  + NV E F  I   +  +   +Q   +   +   G
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPG 186

Query: 192 GR 193
             
Sbjct: 187 NN 188

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  246 bits (631), Expect = 3e-84
 Identities = 68/160 (42%), Positives = 102/160 (63%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  +E   +A++NGLSF+ETSA  + NV   F  I   +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  245 bits (628), Expect = 1e-83
 Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           TS K + +K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   I
Sbjct: 2   TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQI 61

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMF 119
           WDTAGQER+ SL   +YRGA   V+V+D+T+ ++F+    W  E   Q +P    N    
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL------AE 173
           ++ NK+DLE ++            +N + + ETSAK A NV + F  IA+         E
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

Query: 174 VNPSRQTGMKLHTESHGGGRRGFCC 198
           +       +KL            C 
Sbjct: 182 LYNEFPEPIKLDKNERAKASAESCS 206

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  240 bits (616), Expect = 3e-82
 Identities = 69/160 (43%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +A+ENGL FLE SAK+  NV + F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  242 bits (619), Expect = 5e-82
 Identities = 71/160 (44%), Positives = 100/160 (62%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF K +F    +STIG  F T+ L +    IK  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA  A++VYDI+   S+E    W+ EL+   + N+ + L+ NK DL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +AQEN L F ETSA ++ NV++ F E+   +
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  239 bits (613), Expect = 3e-81
 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 1   MARTSNKNIQV--KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           MA  +    QV  KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
           IKF++WDTAGQE++  L   YY  A  A++++D+TS  +++    W ++L R    N+ +
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPI 122

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            L  NKVD+++++     +  ++ ++  L + + SAKS +N  + F  +A++L
Sbjct: 123 VLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  237 bits (608), Expect = 3e-81
 Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA A V+V+  T  +SFE    W +++  +   ++   LV NK+DL +  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            +KNEE E  A+   L F  TS K   NV+E+F  +A++ 
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  238 bits (609), Expect = 7e-81
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 40/203 (19%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK----- 60
            K    K VLLG+   GK+S+VLR  K  F +   +TIGA+F T V++LN++ IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  --------------------------------FDIWDTAGQERYHSLAPMYYRGAAAAVV 88
                                           FDIWDTAGQERY S+ P+YYRGA  A+V
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 89  VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148
           V+DI++ ++ +RAK WV +L+   + N I+ LVANK+D   K +V   E + YAQ+N L 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLL 179

Query: 149 FLETSAKSAHNVNELFYEIAKRL 171
           F++TSAK+  N+  +FY +A+ +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEI 202

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  237 bits (608), Expect = 1e-80
 Identities = 66/160 (41%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G  GTGK+ L+ +F++ +F      TIG  F ++V+++   T+K  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   +PN+++ L  NK DL+ +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E   +AQEN L FLETSA +  NV E F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  237 bits (606), Expect = 1e-80
 Identities = 70/160 (43%), Positives = 107/160 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            VK EEGE +A+E+GL F+ETSAK+A NV E F   AK +
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  237 bits (607), Expect = 1e-80
 Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
               ++ K+ ++G+   GK++L+  F     +F      T G       +++ + T+  +
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 63  IW--DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ---GNPNLI 117
           ++  DTAG + Y      Y+ G   A++V+D++SM+SFE  K W + L+         L 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 118 MFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEIAKRLAEVN 175
             LVANK DL  +R  V+ +  + +A  N L F + SA     + +  F  IA       
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY 194

Query: 176 PSRQTGMKLHTESH 189
             +    +    ++
Sbjct: 195 EDKVAAFQDACRNY 208

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  234 bits (600), Expect = 1e-79
 Identities = 68/160 (42%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  +  E +++   + +LETSAK + NV +LF ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  232 bits (595), Expect = 5e-79
 Identities = 64/160 (40%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E   +AQEN L FLETSA +  NV E F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  231 bits (590), Expect = 2e-78
 Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 3/165 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD--- 126
           ER+ SLAP YYR A AA+VVYD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D   
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
              +RKV  EEGE  A+E GL F ETSAK+  NVN++F  I +++
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  231 bits (592), Expect = 3e-78
 Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 9/196 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG+   ++VYD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR---------LAEVNPSRQTGM 182
            V+ +  + +A  N + FLETSA  + NV + F  +A++         L E    ++   
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189

Query: 183 KLHTESHGGGRRGFCC 198
            ++ +       G CC
Sbjct: 190 NVNLKGQSLTNTGGCC 205

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  228 bits (583), Expect = 7e-77
 Identities = 70/160 (43%), Positives = 98/160 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   +VVYD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F  +A  +
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  227 bits (582), Expect = 8e-77
 Identities = 70/160 (43%), Positives = 98/160 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GK+ L+LRF    + +   STIG  F  + + L+  TIK  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   +VVYD+T  +SF   K+W+QE+ R  + N+   LV NK DL  K+
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V     + +A   G+ FLETSAK+A NV + F  +A  +
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  225 bits (577), Expect = 5e-76
 Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLVL+GD   GKT +V RF  G F + Q STIG  F  + L +    +K  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYR A  A++ YDIT   SF     W++++++    N++  L+ NK DL E R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150

Query: 132 KVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E +  A+    L  +ETSAK + NV E F  +A  L
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  222 bits (569), Expect = 7e-75
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 6/166 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL GD   GK+S ++R  K +F +   +T+G  F  + L ++       +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL---- 127
           + S+A  Y+R A   +++YD+T   SF   ++WV  ++   +  + + LV NK D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149

Query: 128 --EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             E ++ V    GE  A   G  F ETSAK   N+ E    +A+ +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  220 bits (564), Expect = 3e-74
 Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +    +++   K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK
Sbjct: 11  LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK 70

Query: 61  FDIWDTAGQERYH-SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-M 118
             +WDTAGQER+  S+   YYR   A V VYD+T+M SF     W++E ++    N I  
Sbjct: 71  IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH---NVNELFYEIAKRL 171
            LV NK DL    +V  +  + +A  + +   ETSAK+ +   +V  +F  +A +L
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  219 bits (561), Expect = 7e-74
 Identities = 63/160 (39%), Positives = 99/160 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  219 bits (561), Expect = 1e-73
 Identities = 57/160 (35%), Positives = 87/160 (54%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V +E G   A   G  F E SAK   NV + F  +   +
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  218 bits (559), Expect = 2e-73
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFL 120
           DTAGQER+ SL   +YRG+   ++ + +    SF+    W +E     +     +    +
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 121 VANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           + NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E  +R+
Sbjct: 122 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  219 bits (560), Expect = 2e-73
 Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130
           + +L P YYRGA   ++VYD+T  D+F +   W+ EL+     N I   LV NK+D  E 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-EN 135

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V   EG  +A+++ + F+E SAK+   V   F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  218 bits (558), Expect = 3e-73
 Identities = 59/160 (36%), Positives = 89/160 (55%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+   GKTS + R+    F     ST+G  F  + +  ++  IK  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDI + +SF   + W  +++     N  + LV NK DLE++R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  E+G   A + G  F E SAK   NV ++F  +   +
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  217 bits (556), Expect = 5e-73
 Identities = 68/184 (36%), Positives = 104/184 (56%), Gaps = 9/184 (4%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTI 59
           M+  S K   +K+++LGD G GKTSL+ R+V  ++    ++TIGA F T+ ++++ +   
Sbjct: 1   MS--SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVA 58

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----N 115
              +WDTAGQER+ SL   +YRGA   V+VYD+T+  SFE  K W  E     N      
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118

Query: 116 LIMFLVANKVDLEE-KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAE 173
               ++ NK+D EE K+ V  +  +  A+  G +    TSAK+A NV+  F EIA+   +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

Query: 174 VNPS 177
            N +
Sbjct: 179 QNQA 182

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  217 bits (555), Expect = 6e-73
 Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F      ST+G  F  +VL ++ V +K  +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++ + L+ NKVD   +
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R VK E+GE  A+E GL F+ETSAK+  NV+  F  IAK L
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  217 bits (554), Expect = 9e-73
 Identities = 59/160 (36%), Positives = 92/160 (57%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++G+   GKTS + R+    F     ST+G  F  + +  +E  +K  IWDTAGQER
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+EE+R
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  E+G+L A++ G  F E SAK   +V + F  +   +
Sbjct: 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  217 bits (554), Expect = 1e-72
 Identities = 59/161 (36%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G  G GKTSL+ RF    F +  +ST+G  F  + + L    I+  IWDTAGQER
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           ++S+   YYR A   ++VYDIT  ++F+   KW++ + +  + +  + LV NK+D E  R
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147

Query: 132 KVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRL 171
           ++  ++GE +AQ+  G+ F E SAK   NV+E+F ++   +
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  215 bits (550), Expect = 4e-72
 Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+++GD G GK+SL+LRF    F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG    +VVYD+TS +SF   K+W+ E+ +    ++   LV NK D  E++
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERK 129

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V+ E+   +A + G+   ETSAK   NV E+F  I + +
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  214 bits (548), Expect = 4e-72
 Identities = 66/160 (41%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  216 bits (551), Expect = 7e-72
 Identities = 64/160 (40%), Positives = 101/160 (63%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  +WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYD+T   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK +
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  214 bits (548), Expect = 1e-71
 Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 2/171 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             K+V+LG    GKTSL  +FV+G+F +  + T+    ++++++L +      + DTAGQ
Sbjct: 24  YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN-TYSKIVTLGKDEFHLHLVDTAGQ 82

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           + Y  L   +  G    V+VY +TS+ SF+  +   Q+L    G   + + LV NK DL 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
            +R+V+  EG+  A+  G +F+E+SA+       +F ++ + +A V  S  
Sbjct: 143 PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  213 bits (544), Expect = 1e-70
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 1   MARTSNKN--IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--- 55
           +    + +    +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +  N   
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 56  -------EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQEL 108
                     +   +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +L
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133

Query: 109 QRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167
           Q      N  + L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +    +
Sbjct: 134 QANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 168 AKRLAEVNPSRQTGMKLHTESHGG 191
              + +         ++    +GG
Sbjct: 194 LDLIMKRMEQCVEKTQIPDTVNGG 217

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  210 bits (536), Expect = 5e-70
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             K+ +LG    GK+SL ++FV+GQF D  + TI    FT+++++N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN-TFTKLITVNGQEYHLQLVDTAGQ 64

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           + Y      Y       ++VY +TS+ SFE  K    +L    G   + + LV NK DL 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK 183
            +R +  EEG+  A+    +FLE+SAK      ++F  I     +++ +   G  
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  207 bits (530), Expect = 6e-69
 Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKF 61
           K + LGD G GKTS++ ++  G+F     +T+G  F  + +                I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFL 120
            +WDTAG ER+ SL   ++R A   ++++D+T+  SF   + W+ +LQ    + N  + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             NK DLE++R VK EE    A++ G+ + ETSA +  N++     +   +
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  203 bits (519), Expect = 1e-67
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+G+ G GK++L   F   Q     E       + + + +++  +   ++D   Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 72  YHSLAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEE 129
                     +   A ++V+ +T   SF +  + +  L+    + +L + LV NK DL  
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
            R+V  EEG   A       +ETSA   HN  ELF    +
Sbjct: 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  204 bits (521), Expect = 2e-67
 Identities = 60/201 (29%), Positives = 111/201 (55%), Gaps = 4/201 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
             +  N     K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++
Sbjct: 5   KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQ 63

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMF 119
            DI DTAGQE Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   
Sbjct: 64  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK--RLAEVNPS 177
           LV NK DLE+KR+V  EE +  A++  ++++ETSAK+  NV+++F+++ +  R  ++  S
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183

Query: 178 RQTGMKLHTESHGGGRRGFCC 198
           ++   K   +S     R  CC
Sbjct: 184 KEKNGKKKRKSLAKRIRERCC 204

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  203 bits (519), Expect = 3e-67
 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 4/177 (2%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
           ++  K+ +VKL + G  G GK++LV+RF+  +F    + T+ + +     ++++  +  +
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSME 79

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLV 121
           I DTAGQE        + R     V+VYDIT   SFE        L       N+ + LV
Sbjct: 80  ILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138

Query: 122 ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIAKRLAEVNPS 177
            NK DL+  R+V  EEGE  A E   +F E SA +   N+ E+FYE+ + +      
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMV 195

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  202 bits (515), Expect = 8e-67
 Identities = 53/169 (31%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
             + N     K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++ 
Sbjct: 10  GGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQI 68

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFL 120
           DI DTAGQE Y ++   Y+R     + V+ IT M+SF     + +++ R + + N+   L
Sbjct: 69  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128

Query: 121 VANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           V NK DLE+KR+V  EE +  A++  ++++ETSAK+  NV+++F+++ +
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  201 bits (515), Expect = 8e-67
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 7/172 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++G  G GK++L ++F++  F    + TI    +T++ S++ +  + DI DTAGQE 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPARLDILDTAGQEE 69

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++V+ I    SF    K   ++ R     +  + LV NK DLE +
Sbjct: 70  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA-----KRLAEVNPS 177
           R+V   E   +   + +++ E SAK   NV+E F ++       +  E+ PS
Sbjct: 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPS 181

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  201 bits (513), Expect = 3e-66
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 2/171 (1%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           +     K+   K++L+G+ G GK++L   F   Q     E       + + + +++  + 
Sbjct: 14  LYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT 73

Query: 61  FDIWDTAGQERYHSLAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIM 118
             ++D   Q            +   A ++V+ +T   SF +  + +  L+    + +L +
Sbjct: 74  LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 133

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
            LV NK DL   R+V  EEG   A       +ETSA   HN  ELF    +
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  197 bits (504), Expect = 3e-65
 Identities = 52/159 (32%), Positives = 96/159 (60%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T     + + + L+   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++ +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  197 bits (503), Expect = 3e-65
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ S+  +Y +     ++VY + +  SF+  K    ++ R      + + LV NKVDLE
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            +R+V + EG   A+E G  F+ETSAKS   V+ELF EI +++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  196 bits (502), Expect = 4e-65
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++LLG  G GK++L   F  G     +    G   + + + ++       ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
              L         A V+VY +T   SFE+A +   +L+R +   ++ + LV NK DL   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           R+V  +EG   A      F+ETSA   HNV  LF  + +
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  196 bits (502), Expect = 5e-65
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ + G  G GK+SLVLRFVKG F +    T+    + QV+S ++      I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANKVDLEE 129
           + ++  +      A ++VY ITS  S E  K   +++        ++ + LV NK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
            R+V++ E E  A+    +F+ETSAK  HNV ELF E+  
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  197 bits (503), Expect = 9e-65
 Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 4/195 (2%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++   ++V+ G  G GK+SLVLRFVKG F D    TI    + QV+S ++      I DT
Sbjct: 5   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDT 63

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR--QGNPNLIMFLVANK 124
            G  ++ ++  +      A ++V+ +TS  S E      + + +      ++ + LV NK
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKL 184
            D  + R+V   E +  AQE   +F+ETSAK  +NV ELF E+       N S     K 
Sbjct: 124 CDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKR 182

Query: 185 HTESHGGGRRGFCCS 199
             +     R    C+
Sbjct: 183 SGKQKRTDRVKGKCT 197

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  206 bits (526), Expect = 2e-64
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---- 57
                   ++K+ L+GD   GKTSL+ + +   F   +  T G    T+     +     
Sbjct: 33  GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92

Query: 58  ----TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN 113
                  F  WD  GQE  H+    +   ++  +++ D     +      W++ +++ G 
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG- 148

Query: 114 PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
               + +V NK+D      ++ ++           F   S K+   V  +   +   +  
Sbjct: 149 GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

Query: 174 VNPSRQT 180
            +    T
Sbjct: 209 PDSIYGT 215

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  194 bits (495), Expect = 7e-64
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           +     +++L +LGD  +GK+SL+ RF+ G +    E T     + + + ++  T    I
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE-QYKKEMLVDGQTHLVLI 58

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-----QGNPNLIM 118
            + AG          +   A A + V+ +   +SF+   +   +L       +G   L +
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 119 FLVANKVDLEEKRKVKNEEG-ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
               +++     R V +     L A     S+ ET A    NV+ +F E+A+++  +   
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173

Query: 178 RQ 179
           +Q
Sbjct: 174 QQ 175

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  192 bits (490), Expect = 3e-63
 Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++VLLGD G GKTSL   F   Q  D     +G   + + L+++       + DT   E+
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64

Query: 72  YHSLAPM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
                      +G +A V+VY I    SFE A +   +L+R     ++ + LV NK DL 
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
             R+V  EEG   A      F+ETSA   HNV ELF  + +
Sbjct: 125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  191 bits (488), Expect = 1e-62
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F D  + TI    + +   ++      D+ DTAGQE 
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEE 78

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY +T   SFE   ++ Q + R     +  M LVANKVDL   
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIAK 169
           RKV  ++G+  A +  + ++ETSAK    NV++ F+++ +
Sbjct: 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  190 bits (485), Expect = 2e-62
 Identities = 34/184 (18%), Positives = 87/184 (47%), Gaps = 15/184 (8%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDF--QESTIGAAFFTQVLSLN---EVTIKFDIW 64
           ++KL+++G+ G+GKT+L+ + +K +  D   Q +T+G       + +    +  +  ++W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVAN 123
           D AG+E ++S  P +    A  + VYD++   +  +  K W+  ++ + + + ++ LV  
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGT 120

Query: 124 KVDLEEKRKVK---NEEGELYAQENGLSFL-----ETSAKSAHNVNELFYEIAKRLAEVN 175
            +D+ ++++ K   ++  +    + G   +       + + +  + +L   I        
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180

Query: 176 PSRQ 179
              Q
Sbjct: 181 IRDQ 184

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  188 bits (479), Expect = 1e-61
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE   ++ ++++R   + ++ M LV NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
             R V++ + +  A+  G+ ++ETSAK+   V + FY + +
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  188 bits (479), Expect = 2e-61
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 8/191 (4%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE    + ++++R   + ++ M LV NK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMKLHTES 188
             R V  ++ +  A+  G+ F+ETSAK+   V++ FY + + + +               
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKD-----GK 176

Query: 189 HGGGRRGFCCS 199
               +    C 
Sbjct: 177 KKKKKSKTKCV 187

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  188 bits (480), Expect = 3e-61
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++  +   I  D+W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVD 126
           G+  +  L     +   A ++VY IT   SFE+A +   +L+R     ++ + LV NK D
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
           L   R+V   EG   A      F+ETSA   HNV ELF  I +++     S++
Sbjct: 157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  185 bits (471), Expect = 2e-60
 Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 3/162 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV+LG  G GK++L ++FV+G F +  + TI    + + + ++      +I DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ ++  +Y +      +VY IT+  +F   +   +++ R     ++ M LV NK DLE
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 129 EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAK 169
           ++R V  E+G+  A++    +FLE+SAKS  NVNE+FY++ +
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  185 bits (473), Expect = 2e-60
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 7/177 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTA 67
           ++VL+G+ G GK++L   F       D     +G   + + L ++  +   I  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVD 126
           G+  +  L     +   A ++VY IT   SFE+A +   +L+R     ++ + LV NK D
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125

Query: 127 LEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTGMK 183
           L   R+V   EG   A      F+ETSA   HNV ELF  I +++     S++   +
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  185 bits (471), Expect = 4e-60
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                   ++V L +LG  G GK++L ++F+  +F    +  +    ++   +++   + 
Sbjct: 12  ENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLED-TYSSEETVDHQPVH 70

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ---GNPNLI 117
             + DTA  +   +    Y   A A +VVY + S  SF+ +  +++ L         ++ 
Sbjct: 71  LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129

Query: 118 MFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNELFYEIAK 169
             L+ NK+D+ + R+V   EG   A   G  F E SA     +V  +F+E  +
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  184 bits (469), Expect = 9e-60
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI    + + + ++  T   DI DTAGQ
Sbjct: 21  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQ 79

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SF     + ++++R + + ++ M LV NK DL 
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
             R V  ++    A+  G+ F+ETSAK+   V + FY + + + +    + 
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  171 bits (435), Expect = 1e-54
 Identities = 33/172 (19%), Positives = 73/172 (42%), Gaps = 11/172 (6%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFD 62
               +  ++K+ ++G++ +GK++LV R++ G +   +ES  G   F + + ++  +    
Sbjct: 13  NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPEGG-RFKKEIVVDGQSYLLL 70

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLV 121
           I D  G          +     A V V+ +    SF+    +   L    N + + M LV
Sbjct: 71  IRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125

Query: 122 ANKVDL--EEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKR 170
             +  +     R + +      + +    ++ ET A    NV  +F ++A++
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (380), Expect = 3e-46
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
            +  N    +K+V++GD   GKT L+L F KG+       T+   F   +          
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM-KYKNEEFIL 73

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFL 120
            +WDTAGQE Y  L P+ Y  +   ++ + + +  SF+    KW  E+ +         L
Sbjct: 74  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVL 132

Query: 121 VANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
           V  KVDL +     V  +EG+   Q+ G ++++E S+ +   +NE+F +    +    P 
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192

Query: 178 RQ 179
            +
Sbjct: 193 PK 194

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  140 bits (355), Expect = 9e-43
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           + + +  +K V +GD   GKT L++ +    F      T+   F   V  +N  T+   +
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-VVNGATVNLGL 60

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVA 122
           WDTAGQE Y+ L P+ YRGA   ++ + + S  S+E    KW+ EL +   P + + LV 
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVG 119

Query: 123 NKVDLEEKRK----------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
            K+DL + ++          +   +GE   +  G  +++E S+KS  NV  +F    +  
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR-- 177

Query: 172 AEVNP 176
             + P
Sbjct: 178 VVLQP 182

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  141 bits (358), Expect = 1e-42
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 17/198 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V +GD   GKT +++ +   +F      T+   F   V +++   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P+ YRGA   V+ + + S  S+E    KW+ EL R+  PN+ + LV  K+DL +
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRD 127

Query: 130 --------KRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180
                      + + +GE   ++ G  +++E S+K+  NV  +F   A ++    P R+ 
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDT-AIKVVLQPPRRKE 186

Query: 181 GMKLHTESHGGGRRGFCC 198
             +         RR  C 
Sbjct: 187 VPR----RRKNHRRSGCS 200

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  140 bits (355), Expect = 2e-42
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 17/184 (9%)

Query: 1   MARTSNKN-IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI 59
           + R S+   I+ KLV++GD   GKT L++ F K QF +    T+    +   + ++   +
Sbjct: 15  VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQV 73

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIM 118
           +  +WDTAGQE Y  L P+ Y      ++ + I S DS E    KW  E+ +   PN+ +
Sbjct: 74  ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPI 132

Query: 119 FLVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFY 165
            LV NK DL +               V++EEG   A       +LE SAK+   V E+F 
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192

Query: 166 EIAK 169
              +
Sbjct: 193 MATR 196

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  139 bits (353), Expect = 5e-42
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           VK+VL+GD G GKTSL++ F  G F +    T+   +   +  +    +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQD 93

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE 129
            Y  L P++Y  A+  ++ +D+TS +SF+    +W  E+       + + +V  K DL +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

Query: 130 KRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
            +             V    G+  A+  G +++LE SA+   NV+ +F E A+
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  138 bits (349), Expect = 1e-41
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           M     +   +K V++GD   GKT L++ +    F      T+   +   V  ++   + 
Sbjct: 21  MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVN 79

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMF 119
             +WDTAGQE Y  L P+ Y      ++ + + S  SFE  + KW  E+ R   PN  + 
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPII 138

Query: 120 LVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           LV  K+DL + +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

Query: 167 IAK 169
             +
Sbjct: 199 AIR 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  138 bits (349), Expect = 2e-41
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
                I+ KLV++GD   GKT L++ F K +F +    T+   +   +  ++   ++  +
Sbjct: 19  YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELAL 77

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVA 122
           WDTAGQE Y  L P+ Y      ++ + + S DS E    KWV E+ +   PN+ + LVA
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVA 136

Query: 123 NKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
           NK DL                 V+ ++G   A       +LE SAK+   V E+F    +
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  136 bits (343), Expect = 1e-40
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            VK VL+GD   GKTSLV+ +    +      T    F   V S++   ++  + DTAGQ
Sbjct: 20  GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV-SVDGRPVRLQLCDTAGQ 78

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLE 128
           + +  L P+ Y      ++ + + S  SF+    KWV E+ R   P   + LV  + DL 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLR 137

Query: 129 EKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
           E  K            V  E  +L A+E    S++E SA +  N+ E+F     
Sbjct: 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  134 bits (340), Expect = 2e-40
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 17/180 (9%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           SN+N++ K+V++GD   GKT+L+  F K  F +    T+   +      ++   I+  +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVAN 123
           DT+G   Y ++ P+ Y  + A ++ +DI+  ++ +    KW  E+ ++  PN  M LV  
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGC 119

Query: 124 KVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYEIAK 169
           K DL                 V  ++G   A++ G  +++E SA  + N V ++F+    
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  133 bits (336), Expect = 1e-39
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 22/186 (11%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIW 64
             + +K V++GD   GKT L++ +    F +    T+   F  +   +++        ++
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQYLLGLY 71

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVAN 123
           DTAGQE Y  L P+ Y      ++ + + +  SF+  K +WV EL ++  PN+   L+  
Sbjct: 72  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGT 130

Query: 124 KVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKR 170
           ++DL +  K            +  E+G+  A+E G   ++E SA +   +  +F E    
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII- 189

Query: 171 LAEVNP 176
            A + P
Sbjct: 190 -AILTP 194

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  132 bits (333), Expect = 2e-39
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
             +K V++GD   GKT L++ +    F      T+   +   V  ++   +   +WDTAG
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAG 62

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDL 127
           QE Y  L P+ Y     +++ + + S  SFE  + KW  E+ R   PN  + LV  K+DL
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDL 121

Query: 128 EEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
            + +             +   +G   A+E G + +LE SA +   +  +F E  +
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  129 bits (325), Expect = 5e-38
 Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 17/183 (9%)

Query: 2   ARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKF 61
               N+N++ K+V++GD   GKT+L+  F K  F +    T+   +      ++   I+ 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIEL 78

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFL 120
            +WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ +    KW  E+ ++  PN  M L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLL 137

Query: 121 VANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYE 166
           V  K DL                 V  ++G   A++ G  +++E SA  + N V ++F+ 
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

Query: 167 IAK 169
              
Sbjct: 198 ATL 200

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (314), Expect = 3e-36
 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 17/181 (9%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
                 + KLVL+GD+  GKT+++    K  + +    T+   +   +    E  ++  +
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSL 79

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVA 122
           WDT+G   Y ++ P+ Y  + A ++ +DI+  ++ + A KKW  E+     P+  + L+ 
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIG 138

Query: 123 NKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAK-SAHNVNELFYEIA 168
            K DL                 +  E+G   A++ G   +LE SA  S  +++ +F   +
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS 198

Query: 169 K 169
            
Sbjct: 199 M 199

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  105 bits (262), Expect = 4e-28
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 29  RFVKGQFFDFQESTIGAAFFTQVLSLNEVT---IKFDIWDTAGQERY--HSLAPMYYRGA 83
            F+  Q F    ST    +  +  +    +   + +   D  G E+       P      
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 84  AAAVVVYDITSMD--SFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL 140
              ++  D++     +F+   K+V  L  Q       + +V  K D   +R +++     
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 141 YAQENGLSFLETSAKSAHNVNELFYEIAK 169
            +++N L  +ETSA+S  NV+  F  + +
Sbjct: 224 LSKKN-LQVVETSARSNVNVDLAFSTLVQ 251

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 96.6 bits (240), Expect = 2e-24
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 16/183 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
                     +K V++GD   GKT L++ +    F      T+   +   V  ++   + 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVN 204

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMF 119
             +WDTAG E Y  L P+ Y      ++ + + S  SF   + KW  E+ R   PN  + 
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPII 263

Query: 120 LVANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYE 166
           LV  K+DL + +             +   +G   A+E G + +LE SA +   +  +F E
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

Query: 167 IAK 169
             +
Sbjct: 324 AIR 326

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 24/188 (12%)

Query: 3   RTSNKNIQVKLVLLGDMGTGKTSLV-LRFVKGQFFD--FQESTIGAAFFTQVLSLNEVTI 59
               +  + +++L+G   +GK+S+  + F K    +  F EST       +    N   +
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFV 69

Query: 60  KFDIWDTAGQERYHSLAP---MYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNP 114
            F IWD  GQ  +        M +RG  A + V D     M++  R    V +  +  NP
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NP 128

Query: 115 NLIMFLVANKVDL--EEKR---------KVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163
           ++   +  +KVD   ++ +         +  ++  +   ++  LSF  TS    H++ E 
Sbjct: 129 DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEA 187

Query: 164 FYEIAKRL 171
           F ++ ++L
Sbjct: 188 FSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 80.0 bits (197), Expect = 3e-18
 Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 19/192 (9%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTA 67
           +  KL+L+G  G+GK+S+    +   +  F    +GA    +   L     +  ++WD  
Sbjct: 2   LGSKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60

Query: 68  GQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ--RQGNPNLIMFL 120
           GQ+ +            ++     + V+D+ S +  +  + + + L+  R+ +P+  +F+
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 121 VANKVDL--EEKRKVKNEEGELYAQE-------NGLSFLETSAKSAHNVNELFYEIAKRL 171
           + +K+DL   +KR+   +       E         L    TS     ++ + + +I   L
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179

Query: 172 AEVNPSRQTGMK 183
                + Q+ +K
Sbjct: 180 IPNMSNHQSNLK 191

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 21/192 (10%)

Query: 1   MA--RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-----------TIGAAF 47
           M+    +N+ I  K+V  G   +GKT+  L+++  +  + ++            T+   F
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDF 61

Query: 48  FT-QVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKW-- 104
               +  +     +F ++   GQ  Y++   +  RG    V V D         A+    
Sbjct: 62  LPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN 121

Query: 105 -VQELQRQG-NPNLIMFLV-ANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161
             + L   G   + +  ++  NK DL +   V+     +   E     LE  A     V 
Sbjct: 122 MRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE-MVRAVVDPEGKFPVLEAVATEGKGVF 180

Query: 162 ELFYEIAKRLAE 173
           E   E+++ +  
Sbjct: 181 ETLKEVSRLVLA 192

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 65.5 bits (159), Expect = 5e-13
 Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 24/177 (13%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT--IKFDIWDTAGQE 70
           ++L+G    GK+S+  + V           + +   T   SL   +  I   + +  GQ 
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 71  RYHSLA---PMYYRGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
            Y   +      ++   A V V D     +++       ++    + NP++ + ++ +KV
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAY-KVNPSINIEVLIHKV 116

Query: 126 DL--EEKR---------KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           D   E+ +         +   E  EL      +SF  TS    H++ E F  I ++L
Sbjct: 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
              +++L L+G   +GKT+ V     GQF +    T+G   F  +  + +  +   +WD 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG---FN-MRKITKGNVTIKLWDI 74

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMF 119
            GQ R+ S+   Y RG +A V + D    +  E +K    EL         QG P L++ 
Sbjct: 75  GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK---NELHNLLDKPQLQGIPVLVL- 130

Query: 120 LVANKVDLE 128
              NK DL 
Sbjct: 131 --GNKRDLP 137

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 25/179 (13%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           K  +++L++LG    GKT+++ +F           T+G  F  + L       K +IWD 
Sbjct: 15  KERELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHR--GFKLNIWDV 69

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMF 119
            GQ+   S    Y+      + V D       +  +   +ELQ         G   LI  
Sbjct: 70  GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIF- 125

Query: 120 LVANKVDLEEKRKVK--NEEGELYA-QENGLSFLETSAKSAHNVNE----LFYEIAKRL 171
             ANK DL          E  EL + + +       SA +  ++      L  +I+ R+
Sbjct: 126 --ANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           ++++++G    GKT+++ +   G+       TIG  F  + +      I F +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQD 55

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKVD 126
           +   L   Y++     + V D    +    A+   +EL R      L   + LV ANK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVLLVFANKQD 112

Query: 127 LEE 129
           L  
Sbjct: 113 LPN 115

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+ Q  ++ +G   +GKT L +R + GQ+ D Q ++I  +        N       + 
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAI-YKVNNNRGNSLTLI 59

Query: 65  DTAGQERY-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-----QGNPNLIM 118
           D  G E     L   +   A A V V D  +     +     + L +         N   
Sbjct: 60  DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPS 117

Query: 119 FLV-ANKVDL 127
            L+  NK D+
Sbjct: 118 LLIACNKQDI 127

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             N ++++++LG  G GKT+++ R   G+    +  TIG  F  + LS     +K ++WD
Sbjct: 14  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSYK--NLKLNVWD 68

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV- 121
             GQ         YY   AA + V D T  D    A    +EL        L     LV 
Sbjct: 69  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVF 125

Query: 122 ANKVDLE 128
           ANK D  
Sbjct: 126 ANKQDQP 132

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 25/181 (13%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K++++G    GKT+++ +F   +       TIG     + + +N    +F +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVIN--NTRFLMWDIGGQ 70

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMFLVA 122
           E   S    YY      +VV D T  +     +   +EL +       +    LI    A
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLIF---A 124

Query: 123 NKVDLEEKRKVK--NEEGELYA-QENGLSFLETSAKSAHNVNE----LFYEIAKRLAEVN 175
           NK D++E   V   ++  +L + +++        A +   + +    +   +  RL   +
Sbjct: 125 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184

Query: 176 P 176
            
Sbjct: 185 H 185

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG    GKTS++ R   G        T+G     + L      I F++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVG--VNLETLQYK--NISFEVWDLGGQ 76

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKV 125
                    Y+    A + V D T  D    AK    EL        L   + L+ ANK 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQ 133

Query: 126 DLEEKRKVK--NEEGELYA-QENGLSFLETSAKSAHNVNE----LFYEIAKR 170
           DL +        E+  + +      + +++S+K+   + E    L   + ++
Sbjct: 134 DLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 25/175 (14%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           Q++++++G    GKT+++ +   G+       TIG  F  + +      I F +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYK--NICFTVWDVGGQ 83

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIMFLVA 122
           ++   L   Y++     + V D    +  + +     ELQ+       +    L+    A
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESA---DELQKMLQEDELRDAVLLVF---A 137

Query: 123 NKVDLEEKRKVK--NEEGELYA-QENGLSFLETSAKSAHNVNE----LFYEIAKR 170
           NK D+     V    ++  L   +        T A     + +    L +E++KR
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
              + + K++++G    GKT+++ +F   +       TIG     + + +N    +F +W
Sbjct: 16  PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIG--SNVEEIVIN--NTRFLMW 70

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV 121
           D  GQE   S    YY      +VV D T  +     +   +EL +   + +L     L+
Sbjct: 71  DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTR---EELYKMLAHEDLRKAGLLI 127

Query: 122 -ANKVDLEE 129
            ANK D++E
Sbjct: 128 FANKQDVKE 136

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG  G GKT+++ R   G+       TIG   F  V ++    +KF +WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG---FN-VETVTYKNLKFQVWDLGGL 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-ANKV 125
                    YY    A + V D    D    +K    EL        L   + +V ANK 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK---SELVAMLEEEELRKAILVVFANKQ 118

Query: 126 DLEEKRKVK--NEEGELYA-QENGLSFLETSAKSAHNVNE----LFYEIAKR 170
           D+E+            L A ++      +TSA     ++E    L   +  R
Sbjct: 119 DMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 14/132 (10%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDI 63
              + +V ++ LG   +GKT+++ +             TIG   F+ +      ++ F +
Sbjct: 16  PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG---FS-IEKFKSSSLSFTV 71

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ------ELQRQGNPNLI 117
           +D +GQ RY +L   YY+   A + V D +       AK+ +       +++ +  P L 
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF 131

Query: 118 MFLVANKVDLEE 129
               ANK+DL +
Sbjct: 132 F---ANKMDLRD 140

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S  + +V+++LLG    GKT+L+ +            T G  F  + +       K ++W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQ--GFKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLI 117
           D  GQ +       Y+      + V D      FE      QEL            P LI
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG---QELTELLEEEKLSCVPVLI 122

Query: 118 MFLVANKVDLE 128
               ANK DL 
Sbjct: 123 F---ANKQDLL 130

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
             K+ Q  +++ G   +GKTSL+              +        + + +       + 
Sbjct: 7   KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEP-----LSAADYDGSGVTLV 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAV--VVYDITSMDSFERAKKWVQELQR------QGNPNL 116
           D  G  +       Y +  A  V  +++ + S    ++     + L            N 
Sbjct: 61  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120

Query: 117 IMFLV-ANKVDL 127
           I  L+  NK +L
Sbjct: 121 IDILIACNKSEL 132

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
                KLV LG    GKT+L+      +       T+     ++ L++    + F  +D 
Sbjct: 22  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELTIA--GMTFTTFDL 76

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNL--IMFLV-A 122
            G  +   +   Y       V + D    +    +K   +EL     +  +  +  L+  
Sbjct: 77  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK---EELDSLMTDETIANVPILILG 133

Query: 123 NKVDLEE 129
           NK+D  E
Sbjct: 134 NKIDRPE 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 7   KNIQVKLVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
            N   KL+ LG D   GKT+L+      +    Q  T      T    L    IKF  +D
Sbjct: 20  WNKHGKLLFLGLD-NAGKTTLLHMLKNDRLATLQ-PTWH---PT-SEELAIGNIKFTTFD 73

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------QGNPNLIM 118
             G  +   L   Y+      V + D    + F+ A+    EL         +  P +I+
Sbjct: 74  LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR---VELDALFNIAELKDVPFVIL 130

Query: 119 FLVANKVDLE 128
               NK+D  
Sbjct: 131 ---GNKIDAP 137

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
              + Q  +++ G   +GKTSL+              +        + + +       + 
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE-----PLSAADYDGSGVTLV 96

Query: 65  DTAGQERYHSLAPMYYRGAAAAV--VVYDITSMDSFERAKKWVQELQR------QGNPNL 116
           D  G  +       Y +  A  V  +++ + S    ++     + L            N 
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 117 IMFLV-ANKVDL 127
           I  L+  NK +L
Sbjct: 157 IDILIACNKSEL 168

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 65  DTAGQERYHSLAPMYYRGAAAA-----VVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           DT G +    L  +    A          +  +T           V   +    P     
Sbjct: 89  DTPGLDDVGELGRLRVEKARRVFYRADCGIL-VTDSAPTPYEDDVVNLFKEMEIP---FV 144

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           +V NK+D+  ++  + +   LY        L  SA      +++   I++ L  
Sbjct: 145 VVVNKIDVLGEKAEELKG--LYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 55/212 (25%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSL---VLRFVKGQ-FFDFQES--TIG------------AA 46
             KN+    ++ G +G+GKT +   V    K Q   DF+     +               
Sbjct: 149 PAKNV----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 47  FFTQV------LSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV---VYDITSMDS 97
              Q+       S +   IK  I     + R    +  Y       +V   V +  + ++
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKAWNA 261

Query: 98  FE-RAKKWVQELQRQGNPNLIMFLVANK---VDLEEKRKV--KNEEGELYAQENGLSFLE 151
           F    K  +    R     +  FL A     + L+        +E   L  +     +L+
Sbjct: 262 FNLSCKILL--TTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLD 312

Query: 152 TSAKS----AHNVNELFYE-IAKRLAEVNPSR 178
              +         N      IA+ + +   + 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD-GLAT 343

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-------Q 111
           I F +WD  GQ++   L   Y++     + V D    +    A+   +EL R       +
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELR 265

Query: 112 GNPNLIMFLVANKVDLE 128
               L+    ANK DL 
Sbjct: 266 DAVLLVF---ANKQDLP 279

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 89  VYDITSMDSFERAKKWVQELQRQGNPNLI---MFLVANKVDLEEKRKVKNEEGELYAQEN 145
           V D    +  +  +   +E+    +P L+     +  NKVDL E+  VK     L     
Sbjct: 242 VLDAAD-EPLKTLETLRKEV-GAYDPALLRRPSLVALNKVDLLEEEAVKALADAL--ARE 297

Query: 146 GLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
           GL+ L  SA +   +  L   +   +    P
Sbjct: 298 GLAVLPVSALTGAGLPALKEALHALVRSTPP 328

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 87  VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG 146
            VV+ +          + V    +     + + LV NK+D       K  E  + A    
Sbjct: 89  AVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA-----AKYPEEAMKAYHEL 143

Query: 147 LSFLET---SAKSAHNVNELFYEIAKRLAE 173
           L   E    SA     V EL  ++   + E
Sbjct: 144 LPEAEPRMLSALDERQVAELKADLLALMPE 173

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 114 PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            +L   +V NK+D+ ++  +K  E  +  +E GL+ ++ SA     ++ +  EI K L  
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFV--KEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336

Query: 174 V 174
           +
Sbjct: 337 L 337

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 83  AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA 142
           A   + + D+ +    +   +  +          +   VANK+D        +      A
Sbjct: 313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL--TVANKLDRAAN---ADALIRAIA 367

Query: 143 QENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQTG 181
              G   +  SA +   ++ L   +   +  ++   +  
Sbjct: 368 DGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEAS 406

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 87  VVVYDITSMDSFERAKKWV--QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144
           V+++ I + + +    + +    ++    P   + +V NK+D     K      +   ++
Sbjct: 95  VILFMIDATEGWRPRDEEIYQNFIKPLNKP---VIVVINKIDKIGPAKNVLPLIDEIHKK 151

Query: 145 NGLSFLE---TSAKSAHNVNELFYEIAKRLAE 173
           +     E    SA    N++EL   I K L E
Sbjct: 152 HP-ELTEIVPISALKGANLDELVKTILKYLPE 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.68
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.61
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.55
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.54
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.53
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.49
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.44
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.32
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.26
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.98
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.93
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.92
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.47
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.36
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.27
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.27
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.23
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.1
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.1
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.07
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.92
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.88
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.78
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.7
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.6
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.6
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.58
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.57
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.56
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.56
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.54
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.5
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.46
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.46
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.44
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.41
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.41
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.4
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.4
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.4
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.38
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.36
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.36
2xxa_A	433	Signal recognition particle protein; protein trans	97.36
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.35
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.34
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.33
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.31
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.31
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.31
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.3
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.3
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.3
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.29
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.29
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.29
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.28
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.27
1g6h_A	257	High-affinity branched-chain amino acid transport	97.27
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.27
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.26
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.26
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.26
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.25
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.25
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.25
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.25
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.25
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.25
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.25
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.24
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.24
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.24
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.23
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.23
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.23
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.22
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.21
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.2
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.2
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.2
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.19
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.18
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.18
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.18
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.17
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.16
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.16
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.16
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.16
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.16
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.15
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.15
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.14
3end_A	307	Light-independent protochlorophyllide reductase ir	97.13
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.13
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.12
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
1via_A	175	Shikimate kinase; structural genomics, transferase	97.11
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.1
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.1
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.09
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.09
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.09
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.08
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.07
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.04
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.04
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.03
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.01
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.01
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.01
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.01
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.99
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.98
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.98
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.98
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.97
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.97
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.95
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.94
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.94
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.93
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.93
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.93
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.92
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.92
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.92
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.91
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.9
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.9
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.9
3co5_A	143	Putative two-component system transcriptional RES	96.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.9
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.9
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.9
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.9
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.9
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.88
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.88
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.87
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.86
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.86
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.84
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.82
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.79
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.79
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.79
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.78
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.77
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.74
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.74
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.74
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.73
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.73
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.71
2og2_A	359	Putative signal recognition particle receptor; nuc	96.71
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.68
3bos_A	242	Putative DNA replication factor; P-loop containing	96.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.66
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.65
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.65
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.65
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.65
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.58
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.58
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.56
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.55
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.53
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.53
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.48
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.48
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.47
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.45
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.44
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.44
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.43
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.43
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.43
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.41
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.4
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.4
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.39
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.39
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.39
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.32
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.31
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.3
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.27
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.26
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.25
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.24
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.21
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.21
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.21
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.17
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.17
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.17
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.16
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.15
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.13
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.12
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.12
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.11
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.11
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.1
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.1
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.06
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.06
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.06
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.06
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.03
2qgz_A	308	Helicase loader, putative primosome component; str	96.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.02
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.99
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.98
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.97
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.96
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.92
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.91
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.91
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.9
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.9
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.89
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.88
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.86
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.84
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.84
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.81

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.2e-43  Score=255.05  Aligned_cols=169  Identities=44%  Similarity=0.735  Sum_probs=147.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+++||+|+|.+|||||||+++|..+.+...+.++++.++.......++..+.+.+|||+|+++|..+++.+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            46799999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+.....+++|+++|+||+|+.+.++++..++..+++.++++|+++||++|.||+++|+.|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988878899999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 029103          168 AKRLAEVNP  176 (199)
Q Consensus       168 ~~~~~~~~~  176 (199)
                      ++.+.....
T Consensus       171 ~~~i~~~~~  179 (216)
T 4dkx_A          171 AAALPGMES  179 (216)
T ss_dssp             HHHC-----
T ss_pred             HHHHHhhhc
Confidence            999876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.8e-37  Score=222.50  Aligned_cols=170  Identities=38%  Similarity=0.692  Sum_probs=157.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            46789999999999999999999999988877888888888888888889899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877778999999999999887777888888999999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q 029103          167 IAKRLAEVNP  176 (199)
Q Consensus       167 l~~~~~~~~~  176 (199)
                      |.+.+.+...
T Consensus       165 l~~~i~~~~~  174 (206)
T 2bcg_Y          165 MARQIKESMS  174 (206)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999987754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.6e-36  Score=218.05  Aligned_cols=192  Identities=34%  Similarity=0.618  Sum_probs=149.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45789999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCCCHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~  161 (199)
                      |+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .......+...++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988776542    578999999999997 34556677777777 678899999999999999


Q ss_pred             HHHHHHHHHHHhhCCC------CCCCCccccccCCCCCCCCCCC
Q 029103          162 ELFYEIAKRLAEVNPS------RQTGMKLHTESHGGGRRGFCCS  199 (199)
Q Consensus       162 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~cc~  199 (199)
                      ++|++|.+.+.++...      ........+.+...+.+.+|||
T Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          164 QAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             HHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            9999999999776432      1222333332323356667877

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=9.8e-36  Score=210.60  Aligned_cols=175  Identities=70%  Similarity=1.095  Sum_probs=153.7

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~   80 (199)
                      |+........++|+++|++|||||||+++|.+..+.....++.+.++......+++..+.+.+||+||++.+...+..++
T Consensus         3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            67777778899999999999999999999999988877778888888888888888899999999999999999999999


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+.+...+...+...++..++++++++||++|.|+
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV  162 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence            99999999999999999999999999998887789999999999999877777888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 029103          161 NELFYEIAKRLAEVN  175 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (199)
                      +++|++|.+.+.+..
T Consensus       163 ~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          163 KEIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999998886643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=7.4e-36  Score=215.43  Aligned_cols=166  Identities=31%  Similarity=0.556  Sum_probs=147.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            3579999999999999999999999887766666665544 455667888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..++...++..++..++++++++||++|.|++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999988765 358999999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 029103          167 IAKRLAEV  174 (199)
Q Consensus       167 l~~~~~~~  174 (199)
                      |.+.+.++
T Consensus       171 l~~~i~~~  178 (206)
T 2bov_A          171 LMREIRAR  178 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=216.90  Aligned_cols=170  Identities=42%  Similarity=0.687  Sum_probs=146.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            56899999999999999999999998887777788888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++..++++++++||+++.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988767789999999999998877788888899999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 029103          168 AKRLAEVNPS  177 (199)
Q Consensus       168 ~~~~~~~~~~  177 (199)
                      .+.+.++...
T Consensus       171 ~~~i~~~~~~  180 (223)
T 3cpj_B          171 INTIYQKVSK  180 (223)
T ss_dssp             HHHHTTCC--
T ss_pred             HHHHHHHhhh
Confidence            9999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=208.23  Aligned_cols=171  Identities=41%  Similarity=0.688  Sum_probs=158.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35689999999999999999999999988888888888889888898999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887789999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 029103          167 IAKRLAEVNPS  177 (199)
Q Consensus       167 l~~~~~~~~~~  177 (199)
                      |.+.+.++.+.
T Consensus       173 l~~~i~~~~~~  183 (196)
T 3tkl_A          173 MAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHhcc
Confidence            99999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=9.9e-35  Score=207.50  Aligned_cols=171  Identities=41%  Similarity=0.745  Sum_probs=152.5

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      ....+.+||+|+|++|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34467999999999999999999999998887777777888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988777889999999999998877788888999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 029103          165 YEIAKRLAEVN  175 (199)
Q Consensus       165 ~~l~~~~~~~~  175 (199)
                      ++|.+.+.++.
T Consensus       176 ~~l~~~i~~~~  186 (191)
T 2a5j_A          176 INTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.7e-34  Score=205.95  Aligned_cols=168  Identities=36%  Similarity=0.636  Sum_probs=154.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++.++|+|+|.+|||||||+++|.+..+.....++.+.++........+..+.+.+||+||++.+...+..++..+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            45689999999999999999999999988777778888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876778999999999999887777888889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 029103          167 IAKRLAEV  174 (199)
Q Consensus       167 l~~~~~~~  174 (199)
                      |.+.+.++
T Consensus       179 l~~~i~~~  186 (189)
T 2gf9_A          179 LVDVICEK  186 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-35  Score=210.44  Aligned_cols=169  Identities=40%  Similarity=0.708  Sum_probs=155.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+|+|.+|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            35689999999999999999999999988877888888888888888899899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||++|+|++++|++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877778999999999999877778888888999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.++.
T Consensus       183 l~~~i~~~~  191 (201)
T 2ew1_A          183 LACRLISEA  191 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.1e-35  Score=209.99  Aligned_cols=170  Identities=38%  Similarity=0.640  Sum_probs=147.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35689999999999999999999999888777777777788788888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY  165 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~  165 (199)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..++...++ +++++||++|+|++++|+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887778899999999999988777888889999999999 999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 029103          166 EIAKRLAEVNP  176 (199)
Q Consensus       166 ~l~~~~~~~~~  176 (199)
                      +|.+.+.++..
T Consensus       186 ~l~~~i~~~~~  196 (201)
T 2hup_A          186 RVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhcc
Confidence            99999987653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.7e-35  Score=209.90  Aligned_cols=169  Identities=37%  Similarity=0.696  Sum_probs=125.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++.++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35789999999999999999999998877766777778778777888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876778999999999999877777888889999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.++.
T Consensus       165 l~~~i~~~~  173 (183)
T 2fu5_C          165 LARDIKAKM  173 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999997754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1e-34  Score=203.29  Aligned_cols=167  Identities=44%  Similarity=0.774  Sum_probs=145.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+++|++|||||||+++|.++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999888777788888888878888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887765678999999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHHh
Q 029103          167 IAKRLAE  173 (199)
Q Consensus       167 l~~~~~~  173 (199)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.9e-34  Score=203.44  Aligned_cols=168  Identities=42%  Similarity=0.744  Sum_probs=153.6

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ...+.++|+|+|.+|||||||+++|.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34568999999999999999999999988877777888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999888778999999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 029103          166 EIAKRLAE  173 (199)
Q Consensus       166 ~l~~~~~~  173 (199)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=203.94  Aligned_cols=168  Identities=38%  Similarity=0.657  Sum_probs=152.7

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            45789999999999999999999998888777788888888888888899899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            9999999999999999999998776 468999999999999888888888999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.+..
T Consensus       165 l~~~~~~~~  173 (181)
T 3tw8_B          165 ITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999997754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.3e-34  Score=202.53  Aligned_cols=166  Identities=65%  Similarity=1.019  Sum_probs=152.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      +.+.++|+++|++|||||||+++|.++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35689999999999999999999999888877778888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877788999999999999877777788888999999999999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |.+.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            988664

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=206.38  Aligned_cols=171  Identities=38%  Similarity=0.684  Sum_probs=155.3

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      +...+.++|+|+|.+|||||||+++|.+..+.....++.+.++......+.+..+.+.+||+||++.+..++..++..+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            33456899999999999999999999998887777788888888888888889999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766789999999999998777778888899999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 029103          165 YEIAKRLAEVN  175 (199)
Q Consensus       165 ~~l~~~~~~~~  175 (199)
                      ++|.+.+.++.
T Consensus       180 ~~l~~~i~~~~  190 (193)
T 2oil_A          180 ETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.9e-34  Score=200.22  Aligned_cols=166  Identities=46%  Similarity=0.777  Sum_probs=153.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+++|++|||||||+++|.+..+.....++.+.++........+....+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35689999999999999999999999988877888888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.+++.+..|+..+.....+..|+++|+||+|+.+..+....+...++..++++++++||+++.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998887789999999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |.+.+.
T Consensus       163 i~~~i~  168 (170)
T 1z0j_A          163 ISRRIP  168 (170)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.3e-34  Score=204.51  Aligned_cols=169  Identities=38%  Similarity=0.669  Sum_probs=155.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++.++|+|+|++|||||||+++|.+..+.....++.+.+........++..+.+.+||+||++.+...+..++..+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35789999999999999999999999888877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||++|+|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988876788999999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.++.
T Consensus       167 l~~~~~~~~  175 (186)
T 2bme_A          167 CARKILNKI  175 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-34  Score=201.34  Aligned_cols=171  Identities=41%  Similarity=0.704  Sum_probs=145.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      +..+..++|+++|.+|||||||+++|.++.+. ....++.+.++.......++..+.+.+||+||++.+...+..++..+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34467899999999999999999999998875 45677788888777778888899999999999999999999999999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876688999999999999887777888889999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |++|.+.+.++.
T Consensus       165 ~~~l~~~~~~~~  176 (180)
T 2g6b_A          165 FTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.5e-34  Score=202.75  Aligned_cols=170  Identities=31%  Similarity=0.477  Sum_probs=150.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+++|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999998888777777777766 66777888899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...++..++..++++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998887654 46899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 029103          166 EIAKRLAEVNPS  177 (199)
Q Consensus       166 ~l~~~~~~~~~~  177 (199)
                      +|.+.+.+....
T Consensus       162 ~l~~~~~~~~~~  173 (181)
T 3t5g_A          162 RIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHTC---
T ss_pred             HHHHHHHHhcCC
Confidence            999999886543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-34  Score=206.88  Aligned_cols=169  Identities=49%  Similarity=0.770  Sum_probs=153.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ..++.++|+|+|.+|||||||+++|.+..+.....++.+.++......+.+..+.+.+||+||++.+...+..++..+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            34578999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|+
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999888777899999999999987777788889999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 029103          166 EIAKRLAEV  174 (199)
Q Consensus       166 ~l~~~~~~~  174 (199)
                      +|.+.+.+.
T Consensus       179 ~l~~~i~~~  187 (192)
T 2fg5_A          179 GISRQIPPL  187 (192)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhh
Confidence            999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-34  Score=201.31  Aligned_cols=164  Identities=54%  Similarity=0.889  Sum_probs=150.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.++|+++|++|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            47899999999999999999999988877778888888888888888899999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc---ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |+|++++.+++.+..|+..+......+.|+++++||+|+.+.   .++...+...++..++++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877788999999999999765   56777888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 029103          166 EIAKRLA  172 (199)
Q Consensus       166 ~l~~~~~  172 (199)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=5.2e-34  Score=201.52  Aligned_cols=171  Identities=27%  Similarity=0.499  Sum_probs=151.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .+....++|+++|.+|||||||+++|.+..+...+.++.+..+. .....++..+.+.+||+||++.+..++..++..+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            34456899999999999999999999998877767777666655 56677888899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            99999999999999999999988744 44578999999999999887788888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 029103          164 FYEIAKRLAEVNP  176 (199)
Q Consensus       164 ~~~l~~~~~~~~~  176 (199)
                      |++|.+.+.+...
T Consensus       163 ~~~l~~~~~~~~~  175 (181)
T 2fn4_A          163 FEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.7e-34  Score=200.37  Aligned_cols=166  Identities=40%  Similarity=0.728  Sum_probs=145.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.++|+++|++|||||||+++|.+..+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            47899999999999999999999988877777888888888888888888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+. ...........++..++++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999988877789999999999994 445667888889999999999999999999999999999


Q ss_pred             HHHHhhC
Q 029103          169 KRLAEVN  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +.+.++.
T Consensus       161 ~~~~~~~  167 (170)
T 1g16_A          161 KLIQEKI  167 (170)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-35  Score=210.72  Aligned_cols=169  Identities=35%  Similarity=0.633  Sum_probs=156.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.+||+|+|.+|||||||+++|.+..+.....++.+.++........+..+.+.+||+||++.+..++..++..+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            57899999999999999999999998887777788888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++|
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988877899999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 029103          168 AKRLAEVNP  176 (199)
Q Consensus       168 ~~~~~~~~~  176 (199)
                      .+.+.++.+
T Consensus       181 ~~~i~~~~~  189 (191)
T 3dz8_A          181 VDAICDKMS  189 (191)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhcc
Confidence            999987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=206.64  Aligned_cols=170  Identities=35%  Similarity=0.686  Sum_probs=147.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .+....++|+|+|.+|||||||+++|.++.+.....++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            44467899999999999999999999988877777788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~  163 (199)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+...++... +++++++||++|+|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999988877778999999999999887777788888888874 889999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029103          164 FYEIAKRLAEV  174 (199)
Q Consensus       164 ~~~l~~~~~~~  174 (199)
                      |++|.+.+.++
T Consensus       181 ~~~l~~~i~~~  191 (192)
T 2il1_A          181 FLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=8e-34  Score=204.55  Aligned_cols=169  Identities=34%  Similarity=0.609  Sum_probs=154.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++.++|+|+|++|||||||+++|.+..+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            45689999999999999999999999888777788888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+.......++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887778888899999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.++.
T Consensus       165 l~~~i~~~~  173 (203)
T 1zbd_A          165 LVDVICEKM  173 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=9.2e-34  Score=200.94  Aligned_cols=167  Identities=32%  Similarity=0.519  Sum_probs=150.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ...+.++|+|+|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345689999999999999999999999888777777776666 6677788889999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC-CCCCHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNEL  163 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~~  163 (199)
                      +++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+...+...++..++++++++||+ ++.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            99999999999999999999888664 35788999999999998888888999999999999999999999 99999999


Q ss_pred             HHHHHHHHHh
Q 029103          164 FYEIAKRLAE  173 (199)
Q Consensus       164 ~~~l~~~~~~  173 (199)
                      |++|.+.+.+
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998876

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=206.53  Aligned_cols=168  Identities=39%  Similarity=0.686  Sum_probs=144.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.++|+|+|.+|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            56899999999999999999999988877777777887888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|++|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999888767889999999999998777788888899999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.++.
T Consensus       183 ~~~i~~~~  190 (200)
T 2o52_A          183 ARTILNKI  190 (200)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.1e-34  Score=201.72  Aligned_cols=166  Identities=43%  Similarity=0.741  Sum_probs=151.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|++|||||||+++|.++.+.....++.+.+........++..+.+.+||+||++.+...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998888777888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+...++...+++++++|++++.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999998877788888889999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       172 ~~~~~~  177 (179)
T 2y8e_A          172 AAALPG  177 (179)
T ss_dssp             HHTCC-
T ss_pred             HHHHhh
Confidence            887644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=208.02  Aligned_cols=169  Identities=33%  Similarity=0.447  Sum_probs=143.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +....++|+|+|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus         4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   82 (199)
T 2gf0_A            4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA   82 (199)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred             cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence            445689999999999999999999999887766666665444 3445677888899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ ......+...++..++++++++||++|.|++++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL  161 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence            9999999999999998888877766432  5789999999999875 456677888888999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 029103          164 FYEIAKRLAEVNP  176 (199)
Q Consensus       164 ~~~l~~~~~~~~~  176 (199)
                      |++|.+.+.++..
T Consensus       162 ~~~l~~~~~~~~~  174 (199)
T 2gf0_A          162 FQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHCSSSCE
T ss_pred             HHHHHHHHhhhhc
Confidence            9999998876543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=5.1e-34  Score=199.28  Aligned_cols=165  Identities=35%  Similarity=0.606  Sum_probs=150.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999998887777888888888888888888999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.....+...++..++++++++|++++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887764 688999999999998777777888899999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-34  Score=208.65  Aligned_cols=169  Identities=30%  Similarity=0.539  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.|..++..++..+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4689999999999999999999999888766666666554 345567788899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc--------CCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK--------VKNEEGELYAQENGL-SFLETSAKSA  157 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~~~~  157 (199)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+...        +...++..++..++. +|+++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 7998887763 5899999999999876443        367778888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCCCC
Q 029103          158 HNVNELFYEIAKRLAEVNPSR  178 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~~~~~~  178 (199)
                      +|++++|++|++.+.+....+
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999998765433

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.4e-34  Score=203.60  Aligned_cols=170  Identities=31%  Similarity=0.554  Sum_probs=151.9

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE-EEEEEeCCe---------EEEEEEEeCCCccccccc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEV---------TIKFDIWDTAGQERYHSL   75 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~v~l~d~~g~~~~~~~   75 (199)
                      +..+.++|+|+|++|||||||+++|.++.+.....++.+.++. .......+.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4567899999999999999999999998887777788877776 556666655         789999999999999999


Q ss_pred             ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103           76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                      +..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+.......++..++++++++|+
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999887754 78999999999999887777888889999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhC
Q 029103          155 KSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +++.|++++|++|.+.+.++.
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999997754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.7e-34  Score=202.69  Aligned_cols=169  Identities=34%  Similarity=0.520  Sum_probs=148.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ..+.++|+|+|++|||||||+++|.++.+...+.++.+.+.....+...+ ..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45689999999999999999999998887666667777777777777776 67899999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +++|||++++.+++.+..|+..+....   ...+|+++|+||+|+.+.+.+...+...++..++++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999989998887642   13444899999999988777888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 029103          163 LFYEIAKRLAEVN  175 (199)
Q Consensus       163 ~~~~l~~~~~~~~  175 (199)
                      +|++|.+.+.+..
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-33  Score=201.27  Aligned_cols=166  Identities=30%  Similarity=0.552  Sum_probs=143.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..+++|+++|++|||||||+++|.+..+...+.++. .+........++..+.+.+||+||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            468999999999999999999999988766555555 3444566667888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..........++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887754 46899999999999974 456678889999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.+..
T Consensus       160 l~~~~~~~~  168 (189)
T 4dsu_A          160 LVREIRKHK  168 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.8e-33  Score=200.35  Aligned_cols=169  Identities=29%  Similarity=0.489  Sum_probs=148.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      .....++|+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            34568999999999999999999999998877777777666553 56678889999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc--cccCCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Q 029103           86 AVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVKNEEGELYAQENGLS-FLETSAKSAHNVN  161 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  161 (199)
                      +++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+  ...+...+...++..+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 6788888765 56899999999999975  3667788899999999998 9999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 029103          162 ELFYEIAKRLAEVNP  176 (199)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (199)
                      ++|++|.+.+.++.+
T Consensus       177 ~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          177 EVFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=206.73  Aligned_cols=170  Identities=32%  Similarity=0.552  Sum_probs=139.0

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      ..+....++|+|+|.+|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            34445689999999999999999999999888777777788888888888899999999999999999999999999999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc------ccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ....+...++..++...+++++++||++|
T Consensus       102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g  181 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG  181 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence            999999999999999999999999888766789999999999996      34566778888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029103          158 HNVNELFYEIAKRLAE  173 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~  173 (199)
                      .|++++|++|.+.+.+
T Consensus       182 ~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          182 SNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.2e-33  Score=201.48  Aligned_cols=166  Identities=36%  Similarity=0.638  Sum_probs=147.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~~~~~~~~~d~~   86 (199)
                      ...++|+|+|.+|||||||+++|.++.+.....++.+.++....+..++..+.+.+||+||++.+. .++..++..+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            467999999999999999999999988887778888888888888888888999999999999988 8888999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC---CCHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA---HNVNE  162 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~~  162 (199)
                      |+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+...++..++++++++|++++   +|+.+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999999988765 578999999999999887778888899999999999999999999   99999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|++|.+.+.+
T Consensus       178 l~~~l~~~i~~  188 (189)
T 1z06_A          178 IFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=204.94  Aligned_cols=168  Identities=30%  Similarity=0.488  Sum_probs=144.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4589999999999999999999999988776667666555 555666677889999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887653 357899999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q 029103          167 IAKRLAEVNP  176 (199)
Q Consensus       167 l~~~~~~~~~  176 (199)
                      |.+.+.+...
T Consensus       181 l~~~i~~~~~  190 (201)
T 3oes_A          181 VIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHhhhh
Confidence            9999988553

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.9e-33  Score=197.20  Aligned_cols=168  Identities=33%  Similarity=0.604  Sum_probs=146.5

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      +....++|+++|++|||||||+++|.++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34678999999999999999999999988887778888888888888888988999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV  160 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v  160 (199)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .......+...++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876543    688999999999997 45566777888877 66789999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029103          161 NELFYEIAKRLAEV  174 (199)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (199)
                      +++|++|.+.+.++
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-33  Score=202.90  Aligned_cols=167  Identities=39%  Similarity=0.724  Sum_probs=150.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999998887777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ............++..++++++++||+++.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999988876678999999999999 445566778888889999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.++.
T Consensus       177 ~~~~~~~~  184 (213)
T 3cph_A          177 AKLIQEKI  184 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=197.95  Aligned_cols=168  Identities=33%  Similarity=0.414  Sum_probs=136.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccccccccCCCE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPMYYRGAAA   85 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~~~~~~~~d~   85 (199)
                      .+.++|+++|++|||||||+++|.+..+... .++.+.+.....+.+++..+.+.+||+||++.  +..+...++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            3579999999999999999999998766543 34566677777788888889999999999987  55666778899999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887753 4689999999999998877788888888898999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 029103          165 YEIAKRLAEVNP  176 (199)
Q Consensus       165 ~~l~~~~~~~~~  176 (199)
                      ++|.+.+.++..
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999977543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.1e-33  Score=196.55  Aligned_cols=165  Identities=25%  Similarity=0.304  Sum_probs=134.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCCEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-~~~~~~~~~d~~i~   88 (199)
                      .+||+++|++|||||||+++|.+.........+.+.+........++..+.+.+||++|++.+.. ++..++..+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999997766655556666777777888899999999999999998876 67778899999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999877653 589999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.4e-33  Score=205.08  Aligned_cols=169  Identities=25%  Similarity=0.447  Sum_probs=145.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....+||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..++..+|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            34689999999999999999999999988877777777665 44566777889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q 029103           87 VVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  152 (199)
                      |+|||++++.+++. +..|+..+... .++.|+++|+||+|+.+.            +.+...++..++..+++ +|+++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998 68999998877 468999999999999763            56888899999999999 99999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHHhhCCC
Q 029103          153 SAKSAHN-VNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       153 s~~~~~~-v~~~~~~l~~~~~~~~~~  177 (199)
                      ||++|.| ++++|++|.+.+.++...
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             ccCCCcccHHHHHHHHHHHHhccCcC
Confidence            9999998 999999999999876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=8.5e-34  Score=203.46  Aligned_cols=170  Identities=25%  Similarity=0.299  Sum_probs=144.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCC
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAA   84 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-~~~~~~~~~d   84 (199)
                      +....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345689999999999999999999976444333344555666667777888999999999999987764 6777889999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...++..++..++++++++||+++.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998877643 58999999999999877778888889999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |++|++.+.++.
T Consensus       179 f~~l~~~i~~~~  190 (195)
T 3cbq_A          179 FEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999987644

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=200.65  Aligned_cols=165  Identities=24%  Similarity=0.426  Sum_probs=142.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....+||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..+ ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            35689999999999999999999999888777777776655 445667888999999999999988775 6789999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc-CCCCCHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVNE  162 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~~  162 (199)
                      ++|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+...++..++..++++++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            99999999999999999999887653   268899999999999887788889999999999999999999 89999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|++|++.+.+
T Consensus       176 lf~~l~~~i~~  186 (187)
T 3c5c_A          176 VFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.5e-33  Score=198.27  Aligned_cols=167  Identities=37%  Similarity=0.687  Sum_probs=151.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|++|||||||+++|.+..+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            46899999999999999999999999888778888888888888888999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..+...+...++..++++++++||+++.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999887654 36799999999999954 456678888899999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 029103          167 IAKRLAEVN  175 (199)
Q Consensus       167 l~~~~~~~~  175 (199)
                      |.+.+.+..
T Consensus       172 l~~~~~~~~  180 (195)
T 1x3s_A          172 LVEKIIQTP  180 (195)
T ss_dssp             HHHHHHTSG
T ss_pred             HHHHHHhhh
Confidence            999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=8.7e-33  Score=198.86  Aligned_cols=165  Identities=48%  Similarity=0.815  Sum_probs=145.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeE-----------------------------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT-----------------------------   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   58 (199)
                      .+.++|+|+|++|||||||+++|++..+.....++.+.++....+...+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            468999999999999999999999998887777888877777777776654                             


Q ss_pred             --------EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           59 --------IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        59 --------~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                              ..+.+||+||++.+...+..++..+|++++|||++++.+++.+..|+..+.....  .|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence                    8899999999999999999999999999999999999999999999999887643  89999999999 555


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ......+...++..++++++++||+++.|++++|++|.+.+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            667788889999999999999999999999999999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=8.7e-33  Score=196.45  Aligned_cols=163  Identities=18%  Similarity=0.338  Sum_probs=142.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ....++||+|+|.+|||||||++++.++.+...+.++.  ..+...+.+++..+.+.+||++|++.+.     ++..+|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            34579999999999999999999999988876665552  3344777888999999999999998776     7788999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHH
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVN  161 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~  161 (199)
                      +++|||++++.+++.+..|+..+..... .+.|+++++||+|+.  +...+...++..++..++ ++|+++||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999987653 688999999999994  466778888999999987 899999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++|++|.+.+.++.
T Consensus       169 ~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          169 RVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.5e-33  Score=197.45  Aligned_cols=168  Identities=38%  Similarity=0.647  Sum_probs=133.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      ....++|+++|++|||||||+++|.+..+...+.++.+.+.....+..+ +....+.+||+||++.+...+..++..+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4568999999999999999999999988877777777777777777776 556889999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HhCCcEEEeccCCCCC
Q 029103           86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHN  159 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~  159 (199)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ ...+...+...++. ..+++++++|+++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876543    6889999999999954 44566777888887 5678999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029103          160 VNELFYEIAKRLAEV  174 (199)
Q Consensus       160 v~~~~~~l~~~~~~~  174 (199)
                      ++++|++|.+.+.++
T Consensus       165 i~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          165 VDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=6.3e-34  Score=207.13  Aligned_cols=169  Identities=30%  Similarity=0.558  Sum_probs=148.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe----------EEEEEEEeCCCcccccccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKFDIWDTAGQERYHSLA   76 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~l~d~~g~~~~~~~~   76 (199)
                      .++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++.          .+.+.+||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            356899999999999999999999988877666677777766666666665          7889999999999999999


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      ..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+...+...++..++++++++||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            9999999999999999999999999999887765543 689999999999998877788888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhC
Q 029103          156 SAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       156 ~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +++|++++|++|.+.+.++.
T Consensus       182 ~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             TTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999987754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=8.5e-33  Score=198.85  Aligned_cols=169  Identities=29%  Similarity=0.463  Sum_probs=138.0

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA   85 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~   85 (199)
                      .....++|+++|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            345789999999999999999999998877666666665443 4556678888999999999999999999999999999


Q ss_pred             EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEE
Q 029103           86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE  151 (199)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  151 (199)
                      +++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.            ..+...+...++..++. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7988887763 58999999999999752            45677888889988887 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      +||++|.|++++|++|.+.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999987543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=6.7e-33  Score=193.38  Aligned_cols=163  Identities=28%  Similarity=0.349  Sum_probs=123.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|++|||||||+++|.+.... ...+..+.++ ......++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999865543 2334444444 45567788999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887753 47899999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 029103          169 KRLAEV  174 (199)
Q Consensus       169 ~~~~~~  174 (199)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.7e-33  Score=193.07  Aligned_cols=164  Identities=32%  Similarity=0.569  Sum_probs=142.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|++|||||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            479999999999999999999999887666666655444 3445678888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..+....+...++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877643 589999999999998877788888999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=7.4e-33  Score=193.16  Aligned_cols=163  Identities=33%  Similarity=0.588  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999887766666666544 3455677788999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.....+...++..+ +.+++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999988877653 468999999999999887777888888888887 789999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=5.9e-33  Score=193.47  Aligned_cols=164  Identities=34%  Similarity=0.565  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|++|||||||+++|.++.+...+.++.+.. ......+++....+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988776666655533 35667778888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..+....+...++..++++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999998887654 3689999999999998877888888899999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.8e-33  Score=198.74  Aligned_cols=167  Identities=34%  Similarity=0.515  Sum_probs=145.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            35689999999999999999999999888776666666544 45566788889999999999987 67778889999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELF  164 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~  164 (199)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999998887754 4689999999999998877788888999999999999999999999 999999


Q ss_pred             HHHHHHHHhhC
Q 029103          165 YEIAKRLAEVN  175 (199)
Q Consensus       165 ~~l~~~~~~~~  175 (199)
                      ++|.+.+.++.
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999998754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-32  Score=194.62  Aligned_cols=165  Identities=25%  Similarity=0.481  Sum_probs=143.2

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            34689999999999999999999999887766666665554 44556677789999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q 029103           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  152 (199)
                      ++|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.            +.+...++..++..+++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 788888876 358899999999999753            35677888899999897 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q 029103          153 SAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ||++|+|++++|++|.+.+..
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.4e-32  Score=193.86  Aligned_cols=166  Identities=27%  Similarity=0.492  Sum_probs=143.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4689999999999999999999999887766666665444 455667888999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  153 (199)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.            ..+...+...++..++. +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 7888887763 48899999999998653            45677788888888887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      |++|.|++++|++|.+.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999987644

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.6e-32  Score=194.75  Aligned_cols=167  Identities=31%  Similarity=0.551  Sum_probs=146.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+|+|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34689999999999999999999999887666666655444 44556788888999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.......+...++..++++++++|++++.|++++|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  173 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  173 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            999999999999999999988877643 5899999999999988777888889999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 029103          166 EIAKRLAEV  174 (199)
Q Consensus       166 ~l~~~~~~~  174 (199)
                      +|.+.+.++
T Consensus       174 ~l~~~i~~~  182 (187)
T 2a9k_A          174 DLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-32  Score=198.01  Aligned_cols=168  Identities=28%  Similarity=0.343  Sum_probs=139.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCC
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGA   83 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~~~~~~~~   83 (199)
                      ..+.+||+|+|.+|||||||+++|.+...  ... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            34679999999999999999999986432  232 33456666677778889899999999999876 455667788999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++..++++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988876542 35799999999999987777888888888889999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 029103          163 LFYEIAKRLAEVN  175 (199)
Q Consensus       163 ~~~~l~~~~~~~~  175 (199)
                      +|++|.+.+..+.
T Consensus       193 lf~~l~~~i~~~~  205 (211)
T 2g3y_A          193 LFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.2e-32  Score=194.26  Aligned_cols=165  Identities=29%  Similarity=0.525  Sum_probs=141.8

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.|...+..++..+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45689999999999999999999999888766666666555 34556778889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q 029103           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (199)
                      ++|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.            +.+...++..++..++ ++|+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 6888888776 468999999999999742            4567788888998887 789999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHh
Q 029103          153 SAK-SAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       153 s~~-~~~~v~~~~~~l~~~~~~  173 (199)
                      ||+ ++.|++++|++|.+.+.+
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999998865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1e-31  Score=191.54  Aligned_cols=168  Identities=29%  Similarity=0.524  Sum_probs=134.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      +...++|+++|.+|||||||+++|.++.+.....++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            45689999999999999999999998877665555554333 45566788889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ......+...++..++++++++|++++.|++++|+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  175 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY  175 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988876543 5789999999999876 45667888899999999999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 029103          166 EIAKRLAEVNP  176 (199)
Q Consensus       166 ~l~~~~~~~~~  176 (199)
                      +|.+.+.+...
T Consensus       176 ~l~~~~~~~~~  186 (190)
T 3con_A          176 TLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.8e-32  Score=191.24  Aligned_cols=161  Identities=24%  Similarity=0.364  Sum_probs=135.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.+||+++|.+|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||++|++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            468999999999999999999999988776 566665443 56667788889999999999876     46788999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCc--ccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ---GNPNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++.+..|+..+...   ...+.|+++|+||+|+.  ..+.+...++..++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            999999999999998876665543   23689999999999994  45667788888888876 6899999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++|++|.+.+.+..
T Consensus       158 ~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          158 RVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.2e-33  Score=202.90  Aligned_cols=173  Identities=29%  Similarity=0.496  Sum_probs=148.1

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCC
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .....+||+|+|.+|||||||+++|+++.+...+.++.+............ ..+.+.+||+||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            345689999999999999999999998887776677777777666665543 4488999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+.......++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988767779999999999998877888888889999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 029103          165 YEIAKRLAEVNPSR  178 (199)
Q Consensus       165 ~~l~~~~~~~~~~~  178 (199)
                      ++|.+.+.+.....
T Consensus       167 ~~l~~~~~~~~~~~  180 (218)
T 4djt_A          167 LHLARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHHHCCTTCC
T ss_pred             HHHHHHHhcccccc
Confidence            99999998865443

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.8e-33  Score=202.14  Aligned_cols=168  Identities=27%  Similarity=0.484  Sum_probs=112.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeCCe--EEEEEEEeCCCcccccccccccccCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      ...++|+|+|++|||||||+++|.+.  .+...+.++.+.+.....+.+++.  .+.+.+||+||++.+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35799999999999999999999988  666666677766677777777776  88999999999999999999999999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcc-cccCCHHHHHHHHHHhCCcEEEeccCC-CC
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEE-KRKVKNEEGELYAQENGLSFLETSAKS-AH  158 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~  158 (199)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ ...+...++..++..++++++++|+++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   6899999999999987 677888889999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhhC
Q 029103          159 NVNELFYEIAKRLAEVN  175 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~  175 (199)
                      |++++|++|.+.+.+..
T Consensus       178 gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNY  194 (208)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999887654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-32  Score=196.08  Aligned_cols=165  Identities=29%  Similarity=0.525  Sum_probs=141.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.|..++..++..+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35689999999999999999999999888776667666555 34556677889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q 029103           87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  152 (199)
                      |+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.            +.+...++..+++.++ ++|+++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 6898888776 468999999999999742            4567788889998887 689999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHh
Q 029103          153 SAK-SAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       153 s~~-~~~~v~~~~~~l~~~~~~  173 (199)
                      ||+ +++|++++|+.|.+.+.+
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=197.30  Aligned_cols=166  Identities=32%  Similarity=0.545  Sum_probs=123.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|.+|||||||+++|.++.+...+.++....+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4689999999999999999999998877665556554333 455667888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEec
Q 029103           88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETS  153 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  153 (199)
                      +|||++++.+++.+. .|+..+... ..+.|+++|+||+|+.+..            .+...++..++...++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 788888776 4678999999999997542            5667788889989897 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      |++|.|++++|++|.+.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999998743

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-32  Score=191.22  Aligned_cols=164  Identities=33%  Similarity=0.464  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            368999999999999999999998887766666665444 3445667888899999999999999889999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |||++++.+++.+..|+..+....  ..+.|+++|+||+|+.+..++...+...++..++++++++|+++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999888888877653  257899999999999887778888888899999999999999999999999999


Q ss_pred             HHHHHHh
Q 029103          167 IAKRLAE  173 (199)
Q Consensus       167 l~~~~~~  173 (199)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9886643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=208.55  Aligned_cols=167  Identities=42%  Similarity=0.715  Sum_probs=141.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.++|+|+|.+|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            56899999999999999999999988777767777888888888888999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998777776677788889999999999999999999999999


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      .+.+.++
T Consensus       191 ~~~l~~~  197 (199)
T 3l0i_B          191 AAEIKKR  197 (199)
T ss_dssp             TTTTTTT
T ss_pred             HHHHHHh
Confidence            8877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.5e-31  Score=191.40  Aligned_cols=164  Identities=34%  Similarity=0.557  Sum_probs=142.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            468999999999999999999999988877666666665543 3567888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103           88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (199)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  153 (199)
                      +|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.            +.+...++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999988 6788887765 358899999999999754            45667788888888888 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 029103          154 AKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~  173 (199)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=6.2e-32  Score=195.00  Aligned_cols=167  Identities=26%  Similarity=0.484  Sum_probs=137.5

Q ss_pred             CCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 029103            3 RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG   82 (199)
Q Consensus         3 ~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~   82 (199)
                      +.......++|+++|.+|||||||+++|.++.+...+.++.+ +........++..+.+.+||+||++.+...+..++..
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ  101 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence            334446689999999999999999999999888766666554 4445566677888999999999999999999999999


Q ss_pred             CCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc------------CCHHHHHHHHHHhCC-c
Q 029103           83 AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK------------VKNEEGELYAQENGL-S  148 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~  148 (199)
                      +|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...            +...++..++...+. +
T Consensus       102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            99999999999999999986 7888887774 7899999999999875432            667788888888886 5


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 029103          149 FLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++++||++|+|++++|++|.+.+
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3e-31  Score=184.51  Aligned_cols=162  Identities=30%  Similarity=0.566  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .++|+++|++|||||||+++|.++.+.....++.+.. .......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            6899999999999999999999987766555555433 345566788889999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.+ ..........++..++++++++|++++.|++++|++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887754 35799999999999876 45667888889999999999999999999999999999


Q ss_pred             HHHHh
Q 029103          169 KRLAE  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-31  Score=191.35  Aligned_cols=165  Identities=32%  Similarity=0.551  Sum_probs=137.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            357899999999999999999999988776666666555543 3567888899999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103           88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS  153 (199)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  153 (199)
                      +|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+.            +.+...++..++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999888 6788888775 368899999999999754            34667778888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q 029103          154 AKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      |++|.|++++|++|.+.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.9e-32  Score=199.90  Aligned_cols=169  Identities=33%  Similarity=0.576  Sum_probs=149.2

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      ......+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+||+||++.+..++..++..+|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34457899999999999999999997777777777888888999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.+....  .+...++...+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  166 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF  166 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999999877 358899999999999764332  25566778889999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 029103          165 YEIAKRLAEVNP  176 (199)
Q Consensus       165 ~~l~~~~~~~~~  176 (199)
                      ++|.+.+.....
T Consensus       167 ~~l~~~l~~~~~  178 (221)
T 3gj0_A          167 LWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHTCTT
T ss_pred             HHHHHHHHhCcc
Confidence            999999987643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.8e-32  Score=196.29  Aligned_cols=168  Identities=20%  Similarity=0.257  Sum_probs=136.1

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------cCccceeEEEEEE-EeCCeEEEEEEEeCCCccc
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------ESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~v~l~d~~g~~~   71 (199)
                      .......+||+|+|++|||||||++.+.+. +...+           .++.+.++..... ..++..+.+.+||+||++.
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            344567999999999999999999877653 33332           2233333333333 5567788999999999999


Q ss_pred             ccccccccccCCCEEEEEEECC------CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103           72 YHSLAPMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN  145 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  145 (199)
                      +...+..+++++|++|+|||++      +.++++.+..|+..+. ....+.|+++|+||+|+.+.  ....++..++..+
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            9999999999999999999999      5567777777877773 33578999999999999764  6778888899999


Q ss_pred             CC-cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          146 GL-SFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       146 ~~-~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ++ +++++||++|+|++++|++|.+.+.++.
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            99 9999999999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.1e-30  Score=186.88  Aligned_cols=167  Identities=28%  Similarity=0.362  Sum_probs=137.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAA   84 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~~~~~~~~d   84 (199)
                      .+.+||+|+|.+|||||||+++|.+..  +... .++.+.+.....+.+++..+.+.+||++|.+. +..++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  2232 23455666667778889899999999999865 4556677888999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++..++++|+++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 457899999999999876777777888888888999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |++|.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999986544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.7e-32  Score=193.02  Aligned_cols=164  Identities=30%  Similarity=0.545  Sum_probs=126.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+.++|+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            346899999999999999999999988876655555443322 2233456677888999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc----------CCHHHHHHHHHHhCC-cEEEecc
Q 029103           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK----------VKNEEGELYAQENGL-SFLETSA  154 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...          +...++..++..++. +++++||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999987 7888887763 5899999999999876443          367778888888896 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~  172 (199)
                      ++|.|++++|++|.+.+.
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.98  E-value=3.9e-30  Score=184.83  Aligned_cols=168  Identities=41%  Similarity=0.717  Sum_probs=148.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999998877777777778888888888999999999999999999989999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|+|+++..+++.+..|+..+......+.|+++++||+|+.+.......++..++...++.++++|++++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888889888876655688999999999998877777888899999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.+..
T Consensus       163 ~~~~~~~~  170 (199)
T 2f9l_A          163 LTEIYRIV  170 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=9.2e-32  Score=192.96  Aligned_cols=167  Identities=16%  Similarity=0.257  Sum_probs=129.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA   83 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~   83 (199)
                      ++.....+|+|+|.+|||||||+++|.++.+.. .+.++.+.....  +  ....+.+.+||+||++.+..++..++..+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            344579999999999999999999999888776 566666643332  2  34457899999999999999999999999


Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCcccccCCHH---HHH-HHHHHhCCcEEE
Q 029103           84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--------PNLIMFLVANKVDLEEKRKVKNE---EGE-LYAQENGLSFLE  151 (199)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~---~~~-~~~~~~~~~~~~  151 (199)
                      |++|+|||++++++++.+..|+..+.....        .+.|+++|+||+|+.+.......   ... .++...++++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence            999999999999999999888888765411        38899999999999765321111   111 111346788999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +||++|.|++++|++|.+.+.++.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             eeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999998865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=9.6e-31  Score=183.18  Aligned_cols=160  Identities=22%  Similarity=0.361  Sum_probs=126.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+.. ..++.+..  ...+...  ...+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            347999999999999999999999887654 34444433  3334444  567899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHH-HH----HHHHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEG-EL----YAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+...  ..+. ..    .+...+++++++||++|+|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999998888887776543 36899999999999976432  1121 11    122345689999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      ++|++|.+.+.++
T Consensus       158 ~l~~~l~~~i~~~  170 (171)
T 1upt_A          158 EAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=3.1e-29  Score=179.06  Aligned_cols=165  Identities=41%  Similarity=0.725  Sum_probs=149.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            35679999999999999999999999888777888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|+|+++..+++.+..|+..+......+.|+++++||+|+.+........+..++...++.++++|++++.+++++|+.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999988888988877665568899999999999877777788899999999999999999999999999999


Q ss_pred             HHHHH
Q 029103          167 IAKRL  171 (199)
Q Consensus       167 l~~~~  171 (199)
                      |.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=2.1e-31  Score=189.76  Aligned_cols=160  Identities=23%  Similarity=0.325  Sum_probs=128.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|.+|||||||+++|.++.+...+.++.+..+..  +  ....+.+.+||+||++.+...+..++..+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            468999999999999999999999988876667777665543  2  233578899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999988888876542 3689999999999997532  222221111     1234579999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.1e-31  Score=184.55  Aligned_cols=156  Identities=19%  Similarity=0.340  Sum_probs=120.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+.. ..++.+..  ...+  ....+.+.+||+||++.+...+..++.++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 34444422  2223  234578999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+.+..  ...+... +    ....+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999988888887653 24689999999999996532  2222211 1    11234579999999999999999


Q ss_pred             HHHHHHHHh
Q 029103          165 YEIAKRLAE  173 (199)
Q Consensus       165 ~~l~~~~~~  173 (199)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=180.77  Aligned_cols=160  Identities=21%  Similarity=0.302  Sum_probs=126.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ...++|+|+|.+|||||||+++|.+.. +.....++.+  .....+..+  ...+.+||+||++.+...+..++..+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999876 3444455554  333444444  36889999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCC
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH  158 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~  158 (199)
                      ++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.  ....+......     ..+++++++||++|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999889888876543   58999999999999753  23344444432     235789999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 029103          159 NVNELFYEIAKRLAE  173 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~  173 (199)
                      |++++|++|.+.+.+
T Consensus       173 gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          173 GLQEGVDWLQDQIQT  187 (190)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.4e-29  Score=179.83  Aligned_cols=160  Identities=19%  Similarity=0.262  Sum_probs=127.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++. ...+.++.+..  ...+..+  ...+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            468999999999999999999999877 54455555533  3333343  468899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  ..+.....     ...+++++++||++|+|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999988888876542 46899999999999976432  22222221     1245689999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=5.9e-30  Score=183.84  Aligned_cols=156  Identities=19%  Similarity=0.235  Sum_probs=119.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+.. +.++.+..  ...+..++  ..+.+||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            346899999999999999999999876543 44444443  23444554  78899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----------------hCCcE
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSF  149 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (199)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .....+...+...                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999988876542 46899999999999975  4455555555442                 34579


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029103          150 LETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      +++||++|+|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.7e-29  Score=180.30  Aligned_cols=156  Identities=20%  Similarity=0.250  Sum_probs=124.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+.. +.++.+..  ...+..++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            346899999999999999999999887653 44444443  34455555  78899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH------------hCCcEEEecc
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSA  154 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  154 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .....+.......            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988876542 36899999999999976  3444454444322            3567999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 029103          155 KSAHNVNELFYEIAKR  170 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~  170 (199)
                      ++|+|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.5e-30  Score=182.69  Aligned_cols=161  Identities=20%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|.+|||||||+++|.++.+. .+.++.+...  ..+..+  ...+.+||+||++.+...+..++.++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999987765 3445544333  233334  378899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|+|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988887643 3689999999999997532  233333322     2345689999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++|++|.+.+....
T Consensus       167 ~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          167 QGLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999886654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.1e-30  Score=186.76  Aligned_cols=159  Identities=18%  Similarity=0.334  Sum_probs=118.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+|+|++|||||||+++|.++.+.. ..++.+  .....+..  ..+.+.+||+||++.+...+..++..+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            458999999999999999999998776543 333333  22333333  3478899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-H----HHHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  ..+... +    ....+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999988888876532 46899999999999965422  122111 1    11234579999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      ++|++|.+.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.8e-30  Score=180.90  Aligned_cols=156  Identities=20%  Similarity=0.295  Sum_probs=122.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|.+|||||||+++|.++.+ ....++.+....  .+..++  ..+.+||+||++.+...+..++..+|+++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4689999999999999999999998876 334455554432  333343  78899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  171 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  171 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888876542 4689999999999996532  233332222     2245689999999999999


Q ss_pred             HHHHHHHHH
Q 029103          162 ELFYEIAKR  170 (199)
Q Consensus       162 ~~~~~l~~~  170 (199)
                      ++|++|.+.
T Consensus       172 ~l~~~l~~~  180 (181)
T 2h17_A          172 QGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=1.1e-28  Score=189.95  Aligned_cols=163  Identities=26%  Similarity=0.482  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            468999999999999999999999888766666664443 4556678888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEecc
Q 029103           89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSA  154 (199)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            ..+...++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999886 7888887764 48999999999998653            46777888899999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 029103          155 KSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~  173 (199)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999998865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.4e-30  Score=184.33  Aligned_cols=160  Identities=24%  Similarity=0.373  Sum_probs=125.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+.. ..++.+...  ......  ...+.+||+||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            468999999999999999999998766543 344444332  333333  468899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-----HHHHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++++++....|+..+.... ..+.|+++|+||+|+.+...  ..+...     .....+++++++||++++|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999998888887776543 46899999999999976432  122111     112235679999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      ++|++|.+.+.++
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=8.5e-30  Score=182.65  Aligned_cols=161  Identities=23%  Similarity=0.322  Sum_probs=122.2

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE--EEEEEe-CCeEEEEEEEeCCCcccccccc---ccc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF--TQVLSL-NEVTIKFDIWDTAGQERYHSLA---PMY   79 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~v~l~d~~g~~~~~~~~---~~~   79 (199)
                      +..+.+||+++|.+|||||||++++.+. +...  ++.+.+..  .....+ .+..+.+.+||++|++.|....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            4457999999999999999999988753 3332  22332222  222223 2566789999999999987776   789


Q ss_pred             ccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------cccCCHHHHHHHHH----HhC
Q 029103           80 YRGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEEGELYAQ----ENG  146 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~  146 (199)
                      ++.+|++|+|||++++  ++++.+..|+..+... ..+.|+++|+||+|+.+       .+.+.......++.    .++
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999987  6777777777776543 56899999999999754       33444555677777    678


Q ss_pred             CcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          147 LSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++|+++||++ .|++++|+.|++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=3.5e-30  Score=182.47  Aligned_cols=159  Identities=20%  Similarity=0.286  Sum_probs=122.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.+..+ ..+.++.+..  ...+..+  .+.+.+||+||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5689999999999999999999987643 2234445433  2333344  467899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++.+..|+..+... ...+.|+++++||+|+.+...  ..+.....     ...+++++++||++|+|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999988888776543 246789999999999976432  22221111     1234679999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029103          162 ELFYEIAKRLAE  173 (199)
Q Consensus       162 ~~~~~l~~~~~~  173 (199)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987755

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.5e-32  Score=195.61  Aligned_cols=163  Identities=28%  Similarity=0.520  Sum_probs=134.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ....++|+++|.+|||||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35689999999999999999999998777655555543333 34445566778899999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEe
Q 029103           87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLET  152 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  152 (199)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+...+...++...++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999998886 7887776553 488999999999997543            4455666777777887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 029103          153 SAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~  171 (199)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.7e-30  Score=182.79  Aligned_cols=164  Identities=20%  Similarity=0.411  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEe---CCeEEEEEEEeCCCcccccccccccccCCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      ++||+|+|++|||||||+++|.+.  .+...+.++.+.++.......   ++..+.+.+||++|++.|..+++.++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999974  344445566666665554433   235678999999999999999999999999


Q ss_pred             EEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC---HHHHHHHHHHhCCc----EEEeccCC
Q 029103           85 AAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLS----FLETSAKS  156 (199)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  156 (199)
                      ++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+.....   ......++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 5788889999988765 3578999999999987644332   23345555566776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHhh
Q 029103          157 AH-NVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~-~v~~~~~~l~~~~~~~  174 (199)
                      +. ++.++++.|.+.+...
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            96 9999999998887663

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=3.5e-30  Score=182.37  Aligned_cols=160  Identities=24%  Similarity=0.357  Sum_probs=122.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.++.+ ....++.+...  ..+..+  ...+.+||+||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999997766 33455555333  333343  378899999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+......     ..+++++++||++|+|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888876653 4789999999999986532  2333322221     123579999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      ++|++|.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4.2e-28  Score=169.25  Aligned_cols=153  Identities=17%  Similarity=0.196  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------ccccccc--
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYYR--   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~~--   81 (199)
                      .++|+++|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||++.+..      +...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998765443334334444444444444  5788999999887653      2345554  


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      .+|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+.+...+.. +...++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999988643   3456666654   3688999999999876544432 3577788889999999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      ++|++|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=185.94  Aligned_cols=165  Identities=23%  Similarity=0.290  Sum_probs=121.8

Q ss_pred             CCceeeEEEEEcCC---------CCcHHHHHHHHHh---CCCCCCCcCcc-ceeEEEEE--------------EEeCCeE
Q 029103            6 NKNIQVKLVLLGDM---------GTGKTSLVLRFVK---GQFFDFQESTI-GAAFFTQV--------------LSLNEVT   58 (199)
Q Consensus         6 ~~~~~~~i~v~G~~---------~~GKSsL~~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~   58 (199)
                      ...+.+||+|+|.+         |||||||+++|.+   ..+...+.++. +.++....              ...++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            34568999999999         9999999999998   34444343332 22221111              1135567


Q ss_pred             EEEEEEe-----------------------CCCccccccccccccc---------------------CCCEEEEEEECCC
Q 029103           59 IKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDITS   94 (199)
Q Consensus        59 ~~v~l~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   94 (199)
                      +.+.+||                       ++|++.|..++..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6677777777877777                     7999999999999


Q ss_pred             H--HHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           95 M--DSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        95 ~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      +  .+++.+..|+..+... ...+.|+++|+||+|+.+.+.+  .+...++.. .+++++++||++|.|++++|++|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  8999999999888765 3467999999999999765443  456667665 48899999999999999999999987


Q ss_pred             HH
Q 029103          171 LA  172 (199)
Q Consensus       171 ~~  172 (199)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1.1e-27  Score=173.75  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=112.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCcccccc-cccccccCCCE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHS-LAPMYYRGAAA   85 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~~-~~~~~~~~~d~   85 (199)
                      ...++|+++|++|||||||+++|.++.+...+.++ ......  +..++. .+.+.+||+||++.+.. ++..++..+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            45899999999999999999999998876655433 233322  444443 67899999999999887 78888999999


Q ss_pred             EEEEEECCCHH-HHHHHHH-HHHHHHH--hCCCCceEEEEEeCCCCcccccCCHHHHHHHH-------------------
Q 029103           86 AVVVYDITSMD-SFERAKK-WVQELQR--QGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-------------------  142 (199)
Q Consensus        86 ~i~v~d~~~~~-s~~~~~~-~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------------------  142 (199)
                      +++|||+++.. ++..... |...+..  ....+.|+++|+||+|+.+...... ....+.                   
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH-HHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH-HHHHHHHHHHHHhccchhccccccC
Confidence            99999999854 4555544 4444433  2346799999999999975432211 111111                   


Q ss_pred             ----------------H-Hh--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 029103          143 ----------------Q-EN--GLSFLETSAKSA------HNVNELFYEIAKR  170 (199)
Q Consensus       143 ----------------~-~~--~~~~~~~s~~~~------~~v~~~~~~l~~~  170 (199)
                                      . .+  +++|+++||++|      .|++++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            0 11  567999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=2.2e-27  Score=167.16  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=118.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...++|+++|++|||||||+++|.+..+.....++.+.+.....+..++.  .+.+||+||++.+...+..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45789999999999999999999988777655555555554455555553  5679999999999999999999999999


Q ss_pred             EEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-------C--CcEEEeccC
Q 029103           88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-------G--LSFLETSAK  155 (199)
Q Consensus        88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~  155 (199)
                      +|+|++++   .+++.+    ..+   ...+.|+++|+||+|+.+..   ...........       +  ++++++||+
T Consensus        84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            99999883   333322    222   23578899999999987531   22222222221       2  579999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCC
Q 029103          156 SAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       156 ~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      +|.|++++|++|.+.+.....
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999999877543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=3.7e-27  Score=179.85  Aligned_cols=160  Identities=21%  Similarity=0.332  Sum_probs=124.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-----cccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-----HSLAPMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-----~~~~~~~~   80 (199)
                      ..+||+++|.+|||||||++++.++...   ....++.+....  ...+.+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999876322   123344444333  333433 678999999999988     67888899


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--ccc----CCHHHHHHHHHHhC---CcE
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--KRK----VKNEEGELYAQENG---LSF  149 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  149 (199)
                      +.+|++|+|||++++.+++.+..|...+....  .++.|+++++||+|+.+  .+.    ....++..++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999988877655443321  56899999999999876  333    44567788888887   789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHH
Q 029103          150 LETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      +++||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999988887553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=7.1e-27  Score=171.23  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=115.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~   78 (199)
                      ...++|+|+|.+|||||||+++|.+..+.....+..............  ...+.+|||||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            357999999999999999999999876542222222222222222222  367899999998321         111234


Q ss_pred             cccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHhC--CcEEE
Q 029103           79 YYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENG--LSFLE  151 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  151 (199)
                      ++..+|++++|||++++.+++  ....|+..+... ..+.|+++|+||+|+.+...+...   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            567889999999999887654  223566655443 357899999999999876665544   4556666666  88999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +||++|+|++++|++|.+.+.+..
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999987654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=8e-28  Score=185.04  Aligned_cols=158  Identities=19%  Similarity=0.328  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..++|+|+|.+|||||||+++|.++.+... .++.+..+  ..+  ....+.+.+|||||++.+..++..++..+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEE--EETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEE--ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999987765432 23333332  222  2334788999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.+...  ..+.....     ...+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999887777765433 46899999999999976432  22221111     11345799999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|++|.+.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=4.8e-27  Score=166.91  Aligned_cols=159  Identities=18%  Similarity=0.187  Sum_probs=121.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR   81 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~------~~~~~~~~   81 (199)
                      ...++|+++|++|||||||+++|.+..+.....+..+.+.....+...+  ..+.+|||||++.+.      .++..++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            3579999999999999999999998655443444445555555555544  678899999998774      23445553


Q ss_pred             --CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           82 --GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        82 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                        .+|++++|+|.++   ++....|+..+..   .+.|+++++||+|+.+...+. .....++..++++++++|++++.|
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence              5999999999875   4455667766654   478899999999987654443 346778888899999999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      ++++|++|.+.+.+..
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999886644

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=2.3e-27  Score=168.72  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC-----------ccccccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMY   79 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g-----------~~~~~~~~~~~   79 (199)
                      ++|+++|++|||||||+++|.+..+.....+..+...  ......    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999998876655544433322  222222    688999999           55666666667


Q ss_pred             ccC-CCEEEEEEECCCHHHHHHH-HHHHHH---------HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103           80 YRG-AAAAVVVYDITSMDSFERA-KKWVQE---------LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS  148 (199)
Q Consensus        80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  148 (199)
                      +.. ++++++|+++.|..+++.+ ..|...         +......+.|+++|+||+|+.+..   ......++..++.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            766 6666666666666666665 455432         122223578999999999987644   55677788888764


Q ss_pred             -------EEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          149 -------FLETSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       149 -------~~~~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                             ++++||++|+|++++|++|.+.+.+..+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999999987554

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.6e-27  Score=168.50  Aligned_cols=158  Identities=16%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------ccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~~   77 (199)
                      ...++|+|+|.+|||||||+++|.+..+.....+..+.+........+.   .+.+||+||          .+.+..++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            4579999999999999999999998765554555555444444444433   588999999          566666677


Q ss_pred             ccccCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHH-HHHHhCCcEEE
Q 029103           78 MYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL-YAQENGLSFLE  151 (199)
Q Consensus        78 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~  151 (199)
                      .++..+   |++++|+|++++.+.... .++..+..   .+.|+++|+||+|+.+......  .+... +....+.++++
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDV-QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            777666   999999999987665543 22222322   5788999999999976544322  11111 22234678999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 029103          152 TSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      +||++|+|++++|++|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=5.5e-26  Score=169.24  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=118.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc------cccc-
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA------PMYY-   80 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~------~~~~-   80 (199)
                      ...++|+++|++|||||||+++|++..+.....+..+.+.....+..  ....+.+||+||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            35789999999999999999999987654333343333333333333  34688999999998776533      4555 


Q ss_pred             -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           81 -RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                       ..+|++++|+|+++.++.   ..|...+..   .+.|+++++||+|+.+...+.. ....++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999986543   235555544   3789999999999876554432 36778888999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029103          160 VNELFYEIAKRLAE  173 (199)
Q Consensus       160 v~~~~~~l~~~~~~  173 (199)
                      ++++|++|.+.+..
T Consensus       154 i~el~~~i~~~~~~  167 (258)
T 3a1s_A          154 LEELKEKIVEYAQK  167 (258)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.2e-27  Score=181.48  Aligned_cols=157  Identities=21%  Similarity=0.258  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---cccccccCCCE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAA   85 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---~~~~~~~~~d~   85 (199)
                      ||+++|..|||||||++++.++.+..   ...++.+.+...    ++ ..+++++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887553322   134555555542    22 347899999999999964   35789999999


Q ss_pred             EEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH----hCCcEEEe
Q 029103           86 AVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE----NGLSFLET  152 (199)
Q Consensus        86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  152 (199)
                      +|+|||++++  +..+.+..|+..+... .+++|+++++||+|+.+.       +++...+++++++.    ++++|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  3444444555555444 568999999999999753       34556666777775    67899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhC
Q 029103          153 SAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       153 s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ||++ .++.++|..|++.+..+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhH
Confidence            9998 689999999998776543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=3e-26  Score=174.82  Aligned_cols=167  Identities=17%  Similarity=0.097  Sum_probs=124.9

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCccccc----------
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYH----------   73 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~----------   73 (199)
                      +++...-.|+++|.+|||||||+|+|++..+... .+..+++........... ..++.+|||||+..+.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            4556788999999999999999999998776432 222222222222222223 5688999999986544          


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEE
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLE  151 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  151 (199)
                      ..+..++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+.............+...++  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4556778999999999999988777776666776655   468899999999997434444666677777765  78999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +||++|.|++++|++|.+.+.+..
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCC
Confidence            999999999999999999987653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=7.3e-27  Score=164.09  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~   79 (199)
                      ...+|+|+|.+|||||||+++|.+.... ....+..+.+.....+..++.  .+.+|||||.+.+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4689999999999999999999986542 122233344445555666653  4789999998653211        1235


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999998877653 4777777776566899999999999854211       11122467899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029103          160 VNELFYEIAKRLAE  173 (199)
Q Consensus       160 v~~~~~~l~~~~~~  173 (199)
                      ++++|++|.+.+..
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=4.2e-27  Score=191.91  Aligned_cols=165  Identities=19%  Similarity=0.280  Sum_probs=125.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEE--------EeCCeEEEEEEEeCCCcccccccccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL--------SLNEVTIKFDIWDTAGQERYHSLAPM   78 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~l~d~~g~~~~~~~~~~   78 (199)
                      ....+||+++|.+|||||||+++|++..+.....++.+.+......        ..++..+.+.+||+||++.+..++..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4568999999999999999999999988777677777776665421        11234578999999999999999999


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++..+|++|+|+|+++.   +.+..|+..+.... ++.|+++|+||+|+.+...+.......+....+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            99999999999998765   45567888887763 578999999999998877777888888888889999999999999


Q ss_pred             CHHHHHHHHHHHHHhhC
Q 029103          159 NVNELFYEIAKRLAEVN  175 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~~  175 (199)
                      |++++|++|.+.+.+..
T Consensus       194 gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             -CTTHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999887644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=6.6e-26  Score=156.98  Aligned_cols=150  Identities=22%  Similarity=0.171  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-------cccccccccC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSLAPMYYRG   82 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-------~~~~~~~~~~   82 (199)
                      .+|+++|++|+|||||+++|.+..+. ....+....+.........+.  .+.+||+||...+       ...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 222233333344444445543  6789999998763       3345567899


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN  161 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  161 (199)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    .+...++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999987533222 122222222   468899999999997642    2223344 5676 79999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=2.2e-26  Score=172.42  Aligned_cols=155  Identities=17%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc-
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR-   81 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~------~~~~~~~~-   81 (199)
                      ..++|+++|++|||||||+++|++........+  +++.......+.. ...+.+||+||+..+.      .++..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            368999999999999999999998653332233  4444444455555 6679999999998775      34455664 


Q ss_pred             -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                       .+|++++|+|+++.++.   ..|...+..   .+.|+++++||+|+.+...+. .....++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999876543   345555554   478899999999987654443 3457788888999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 029103          161 NELFYEIAKRLAE  173 (199)
Q Consensus       161 ~~~~~~l~~~~~~  173 (199)
                      +++|++|.+.+..
T Consensus       152 ~el~~~i~~~~~~  164 (272)
T 3b1v_A          152 DQVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=3.6e-26  Score=170.00  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----------cccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY   80 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----------~~~~~~   80 (199)
                      .+|+++|++|||||||+|+|.+........+..+.+.....+...+.  .+.+||+||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            47999999999999999999987654444555555555666655554  788999999877653          345566


Q ss_pred             --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                        ..+|++|+|+|+++.++...+..+   +.   ..+.|+++++||+|+.+...... ....+...++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999986554443332   22   23789999999999876443322 2455777889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKR  170 (199)
Q Consensus       159 ~v~~~~~~l~~~  170 (199)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999886

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=2.2e-25  Score=159.03  Aligned_cols=156  Identities=19%  Similarity=0.259  Sum_probs=109.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------ccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~~   77 (199)
                      ...++|+|+|.+|||||||+++|.+.... ...+..+.+..........   .+.+||+||          .+.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45789999999999999999999987633 3344444444433333332   477999999          555666666


Q ss_pred             ccccCC---CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH-hCCcE
Q 029103           78 MYYRGA---AAAVVVYDITSMDSF--ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE-NGLSF  149 (199)
Q Consensus        78 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~  149 (199)
                      .++..+   |++++|+|.++..+.  ..+..|+..   .   +.|+++|+||+|+.+...  ....+...+... .++++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            666665   999999998865332  233333332   2   688999999999864332  222334444444 34789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHh
Q 029103          150 LETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +++||++|.|++++|++|.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999988754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=7.4e-25  Score=164.47  Aligned_cols=159  Identities=22%  Similarity=0.176  Sum_probs=120.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~--   80 (199)
                      +.++|+++|++|||||||+++|.+..+.....+..+.+.........+  ..+.+||+||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            368999999999999999999998766444455555555555555554  3588999999887765      445555  


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|++++|+|+++.+   ....|...+...  ...|+++++||+|+.+....... ...+...++++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            6899999999998753   233444444443  23889999999998754433332 67778888999999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 029103          161 NELFYEIAKRLAEVN  175 (199)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (199)
                      +++|++|.+.+....
T Consensus       154 ~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          154 EELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999886643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=6.7e-26  Score=170.28  Aligned_cols=156  Identities=15%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----------ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APM   78 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----------~~~   78 (199)
                      ..++|+++|.+|+|||||+|+|.+........+..+.+.....+...+  ..+.+|||||+..+...          +..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            368999999999999999999998765433444444444444444444  46789999998876632          222


Q ss_pred             c--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           79 Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        79 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      +  ...+|++++|+|+++.+....+   ...+...   +.|+++|+||+|+.+..... .....+...++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            3  2799999999999886554443   3334333   78899999999987544322 224667778899999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029103          157 AHNVNELFYEIAKRLAE  173 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~  173 (199)
                      |.|++++|++|.+.+..
T Consensus       153 g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             GHHHHHHHHHHHTCCCC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999877654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=8.7e-26  Score=164.64  Aligned_cols=164  Identities=13%  Similarity=0.147  Sum_probs=109.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcc----------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQE----------RYHSLA   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~----------~~~~~~   76 (199)
                      ...++|+|+|.+|||||||+++|++...........+.+......... .....+.+|||||..          .+...+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            457899999999999999999999876322233333344443344443 444678899999953          334444


Q ss_pred             cccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HH-HHHHHHH------
Q 029103           77 PMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EE-GELYAQE------  144 (199)
Q Consensus        77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~-~~~~~~~------  144 (199)
                      ..++..   +|++++|+|.+++.+. ....++..+..   .+.|+++|+||+|+.+......  .. ...+...      
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            455544   7889999999875332 22344444443   4688999999999875433211  11 1222222      


Q ss_pred             hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          145 NGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       145 ~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      .+.+++++||++|.|++++|++|.+.+....
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            5678999999999999999999999986643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.3e-25  Score=163.32  Aligned_cols=144  Identities=17%  Similarity=0.188  Sum_probs=105.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC-
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG-   82 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~-   82 (199)
                      ....++|+++|++|+|||||+++|.+..+...   ..++.+.         ......+.+||+||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            34589999999999999999999998775442   2222211         1244578899999999998888888877 


Q ss_pred             ---CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHhCCc
Q 029103           83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLS  148 (199)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  148 (199)
                         +|++|+|+|++ +++++.....|+..+...    ...+.|+++|+||+|+.+.....      ..+...++..+++.
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888887776654    45789999999999997655433      34456666777788


Q ss_pred             EEEeccCCCCC
Q 029103          149 FLETSAKSAHN  159 (199)
Q Consensus       149 ~~~~s~~~~~~  159 (199)
                      ++++|+++|++
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=1.1e-24  Score=165.56  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=108.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------HSLAPM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--------~~~~~~   78 (199)
                      ....+|+|+|.+|||||||+|+|++..+... ..+..........  ......++.+|||||...+        ......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4567899999999999999999998776421 1221111211112  2233568999999998753        344556


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHHHHHhCCcEEEeccCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAKSA  157 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      +++.+|++++|+|++++.+... ..++..+... ..+.|+++++||+|+.+... . ......+  ....+++++||++|
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g  157 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDE  157 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCH
T ss_pred             HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCC
Confidence            7899999999999987643322 2223444433 35789999999999865332 1 1112222  12346899999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 029103          158 HNVNELFYEIAKRLAEV  174 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~~  174 (199)
                      .|++++|+.|.+.+.+.
T Consensus       158 ~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          158 RQVAELKADLLALMPEG  174 (301)
T ss_dssp             HHHHHHHHHHHTTCCBC
T ss_pred             CCHHHHHHHHHHhcccC
Confidence            99999999998877543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=7.6e-24  Score=169.54  Aligned_cols=157  Identities=16%  Similarity=0.150  Sum_probs=98.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~--------~~~   79 (199)
                      ..++|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++  ..+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3689999999999999999999876422 22223333333344445544  568899999987765433        346


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|++++.+++.+..+...+...  .+.|+++|+||+|+.+....   ....+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            88999999999999887664333333323222  27899999999999765432   22334444347899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 029103          160 VNELFYEIAKRLA  172 (199)
Q Consensus       160 v~~~~~~l~~~~~  172 (199)
                      ++++|++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999987

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=4.8e-23  Score=162.56  Aligned_cols=168  Identities=15%  Similarity=0.111  Sum_probs=117.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEE---------E----------EEeCCeEEEEEEEe
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ---------V----------LSLNEVTIKFDIWD   65 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~v~l~d   65 (199)
                      +..+..++|+++|++++|||||+++|++........ .........         .          .........+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            455678999999999999999999998743221100 000000000         0          00012236899999


Q ss_pred             CCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHHH
Q 029103           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQ  143 (199)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~  143 (199)
                      |||++.|...+...+..+|++++|+|++++.++.+...++..+....  ..|+++++||+|+.+......  .+...+..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999899999999999999998766777777777666552  257999999999976432211  11122221


Q ss_pred             H---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          144 E---NGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       144 ~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      .   .+++++++||++|+|+++++++|.+.+....
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            1   1578999999999999999999998775443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=4.6e-23  Score=160.32  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=117.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---------cccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---------~~~~   78 (199)
                      ...++|+++|.+|||||||+++|.+........+..............  ...+.+|||||...+..         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356899999999999999999999765422222222222222223222  35688999999754321         1123


Q ss_pred             cccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           79 YYRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||.|+.+....  .+...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998776  56777788888876533 7899999999999764432  344556667789999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      |+|++++|++|.+.+.+.
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999998664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=8.7e-24  Score=168.40  Aligned_cols=163  Identities=20%  Similarity=0.150  Sum_probs=113.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAP   77 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~~~   77 (199)
                      ..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||+.          .|.....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4689999999999999999999986543 222233333333334444543  58899999983          3333322


Q ss_pred             -ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH-HHHHH----HhCCcEEE
Q 029103           78 -MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQ----ENGLSFLE  151 (199)
Q Consensus        78 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~  151 (199)
                       .++..+|++++|+|++++.+.+.. .|+..+..   .+.|+++++||+|+.+.......+. ..+..    ..++++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence             367889999999999988776664 56666654   4789999999999976544332222 22222    24679999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          152 TSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      +||++|.|++++|+.+.+.+.....+
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~~~~  353 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENHSLR  353 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EecccCCCHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999988765533

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=6.8e-24  Score=163.33  Aligned_cols=159  Identities=20%  Similarity=0.209  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccccc---CCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMYYR---GAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~~~---~~d   84 (199)
                      +|+|+|.++||||||+++|++........+..+.......+.+.+ ...+.+||+||..+    +..+...|++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            588999999999999999987653321222222222223333433 24688999999643    3334455544   499


Q ss_pred             EEEEEEECCC---HHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCC
Q 029103           85 AAVVVYDITS---MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA  157 (199)
Q Consensus        85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  157 (199)
                      ++|+|+|+++   +++++.+..|+.++..+.  ..+.|+++|+||+|+.+..    .....+...++  .+++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   788888889999988764  2589999999999987532    33455666665  68999999999


Q ss_pred             CCHHHHHHHHHHHHHhhC
Q 029103          158 HNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~~~  175 (199)
                      +|+++++++|.+.+.+..
T Consensus       315 ~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTP  332 (342)
T ss_dssp             STTHHHHHHHHHHHTSCC
T ss_pred             cCHHHHHHHHHHHHhhCc
Confidence            999999999999987643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.9e-23  Score=167.28  Aligned_cols=164  Identities=21%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------cccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA   76 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~   76 (199)
                      ...++|+++|.+|+|||||+++|.+.... ....+..+.+.....+..++.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45789999999999999999999975421 112222223322233444443  688999999          45555444


Q ss_pred             c-ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-----CCcEE
Q 029103           77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFL  150 (199)
Q Consensus        77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  150 (199)
                      . .++..+|++++|+|++++.. +....|+..+..   .+.|+++|+||+|+.+.......+........     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 36788999999999987533 233455555554   46899999999999876665555555555554     57899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          151 ETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      ++||++|.|++++|++|.+.+.....+
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999988776544

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=2e-24  Score=170.29  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=114.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-------cc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PM   78 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-------~~   78 (199)
                      ....++|+|+|.+|+|||||+++|.+..+. ....+..+.+.........+.. .+.+|||||++.+..+.       ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            346899999999999999999999877653 2223333334444444444432 78899999998776553       34


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++..+|++++|+|++..   .....|+..+...   +.|+++|+||+|+.+....  .....+...++++++++||++|.
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence            78899999999998432   2335666666655   7889999999999865543  55666667788999999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 029103          159 NVNELFYEIAKRLAEV  174 (199)
Q Consensus       159 ~v~~~~~~l~~~~~~~  174 (199)
                      |++++|++|.+.+.+.
T Consensus       182 gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          182 GFDDIGKTISEILPGD  197 (423)
T ss_dssp             STTTHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHhhhhh
Confidence            9999999999998554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=3.3e-23  Score=160.09  Aligned_cols=118  Identities=20%  Similarity=0.291  Sum_probs=100.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD  126 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  126 (199)
                      .+.+.+||++|++.+...|..++.+++++|+|||+++          ..+++....|+..+.... ..+.|+++++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5788999999999999999999999999999999998          467888888988887643 47899999999999


Q ss_pred             Ccccc---------------cCCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          127 LEEKR---------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       127 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +.+..               .++..++..++.           ..++.++++||+++.|+.++|+++.+.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            86432               355677777776           35678999999999999999999999997754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=2.5e-22  Score=158.68  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=104.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcC--ccceeEEEEEEEe-------------C--C----eEEEEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFD   62 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~v~   62 (199)
                      .+..++|+++|+.++|||||+++|.+..   +..+..+  ++...+....+..             +  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4568999999999999999999998542   2222233  2222332222211             1  1    237899


Q ss_pred             EEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHH
Q 029103           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGEL  140 (199)
Q Consensus        63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~  140 (199)
                      +||+||++.|...+...+..+|++|+|+|++++....+..+.+..+...  ...|+++++||+|+.+....  ...+...
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            9999999998877777788899999999998642122222333333322  23478999999999764432  2233444


Q ss_pred             HHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          141 YAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       141 ~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +...   .+++++++||++|+|+++++++|.+.+..
T Consensus       163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            4443   36789999999999999999999987754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=3.2e-22  Score=147.45  Aligned_cols=165  Identities=17%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC--ccceeEEEEEEEeCCeEEEEEEEeCCCcc-----------ccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----------RYH   73 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-----------~~~   73 (199)
                      ....++|+|+|.+|||||||+++|++..+.....+  ..+...........+  ..+.+|||||..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34589999999999999999999998776544443  223333333344443  467899999943           233


Q ss_pred             ccccccccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHh
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQEN  145 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  145 (199)
                      ..+...++.+|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.+...+.      ......+...+
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            344455678899999999875322  22222222222211  245899999999986544333      23567778888


Q ss_pred             CCcEEEeccCCC-----CCHHHHHHHHHHHHHhhC
Q 029103          146 GLSFLETSAKSA-----HNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       146 ~~~~~~~s~~~~-----~~v~~~~~~l~~~~~~~~  175 (199)
                      +..|+.++...+     .++.++|+.+.+.+.+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            888888887754     689999999988887643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=3e-22  Score=158.41  Aligned_cols=167  Identities=16%  Similarity=0.175  Sum_probs=111.4

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcC--ccceeEEEEEEEe-------------C--C----eEEE
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIK   60 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   60 (199)
                      ......++|+++|++++|||||+++|.+..   +..+..+  ++...+.......             .  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            345678999999999999999999998542   2222333  2222332222211             1  1    1378


Q ss_pred             EEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHH
Q 029103           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEG  138 (199)
Q Consensus        61 v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  138 (199)
                      +.+||+||++.|...+...+..+|++|+|+|+++.....+..+.+..+...  ...|+++++||+|+.+....  ...+.
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            999999999998877777778899999999998642122222233333333  23578999999998764321  12223


Q ss_pred             HHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          139 ELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ..+...   .+++++++||++|+|+++++++|.+.+..
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            333332   36789999999999999999999987754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=6.1e-22  Score=159.20  Aligned_cols=157  Identities=19%  Similarity=0.170  Sum_probs=109.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC----C---CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ----F---FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~   80 (199)
                      ...++|+++|++++|||||+++|.+..    .   ..+..+.++.+.....+..+  ...+.+||+||++.|...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence            468999999999999999999999765    1   12222222222222223333  36789999999999988888889


Q ss_pred             cCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHh----CCcEEE
Q 029103           81 RGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLE  151 (199)
Q Consensus        81 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~  151 (199)
                      ..+|++++|+|+++   +.+.+.    +..+..   .+.|.++++||+|+.+....  ...+...+....    +.++++
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            99999999999987   333333    333333   25778999999999753221  122334444444    578999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHh
Q 029103          152 TSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +||++|+|+++++++|.+.+..
T Consensus       168 vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhhcC
Confidence            9999999999999999998864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=4.8e-22  Score=158.50  Aligned_cols=152  Identities=20%  Similarity=0.199  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPMYY   80 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~~~   80 (199)
                      .+|+|+|.||||||||+|+|.+.... ....+..+.+.........+.  .+.+|||||.+..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999987643 222333333444444545543  5789999997642         23456678


Q ss_pred             cCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH-HHHHHHhCC-cEEEeccCC
Q 029103           81 RGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQENGL-SFLETSAKS  156 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~  156 (199)
                      +.+|++++|+|++++.+..  .+..|+.   .   .+.|+++|+||+|+.+..   .... .++. .+++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence            9999999999998754332  2233332   2   267899999999986421   1222 3333 4566 789999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      |.|+.++|++|.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=1.3e-22  Score=151.37  Aligned_cols=165  Identities=18%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCc-cceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------   76 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~--------   76 (199)
                      ....++|+|+|++|||||||+++|++.... ....+. .+...........  ...+.+|||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            345799999999999999999999987633 222222 2233333333333  3568899999987654322        


Q ss_pred             ---cccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCcccccCCH-------HHHHHHHHH
Q 029103           77 ---PMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVAN-KVDLEEKRKVKN-------EEGELYAQE  144 (199)
Q Consensus        77 ---~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~  144 (199)
                         ..+++.+|++++|+|+++.... ..+..++..+... ....|.++++| |.|+.... ...       .....+...
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence               2257889999999999863222 2222333333221 11345666665 99987431 111       223335555


Q ss_pred             hCCcE-----EEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          145 NGLSF-----LETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       145 ~~~~~-----~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      .+..+     +++||+++.|++++|++|.+.+....
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            55432     78999999999999999999987754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=4.1e-22  Score=153.95  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ..+.+++||++|++.+...|..++++++++|+|||++          +..+++....|+..+.... ..+.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5688999999999999999999999999999999998          7788999999998887653 4789999999999


Q ss_pred             CCccccc--C-------------------CHHHHHHHHHH----------------hCCcEEEeccCCCCCHHHHHHHHH
Q 029103          126 DLEEKRK--V-------------------KNEEGELYAQE----------------NGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus       126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |+.+...  +                   +..++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9864322  1                   13445555332                124468999999999999999999


Q ss_pred             HHHHhh
Q 029103          169 KRLAEV  174 (199)
Q Consensus       169 ~~~~~~  174 (199)
                      +.+.+.
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=3.8e-22  Score=152.13  Aligned_cols=119  Identities=15%  Similarity=0.216  Sum_probs=99.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV  125 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  125 (199)
                      ..+.+++||++|++.+...|..++++++++|+|+|++          +..+++....|+..+.... ..+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3478999999999999999999999999999999665          5677888888888876643 3789999999999


Q ss_pred             CCcccc----------------cCCHHHHHHHH----------HHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          126 DLEEKR----------------KVKNEEGELYA----------QENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       126 D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      |+.+..                ..+..++..+.          ...++.++++||+++.+|+++|+.+.+.+.+..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            987544                45667777663          345677899999999999999999999998754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=2.2e-22  Score=161.25  Aligned_cols=153  Identities=23%  Similarity=0.254  Sum_probs=110.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-ccccc--------cccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RYHSL--------APMY   79 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-~~~~~--------~~~~   79 (199)
                      .++|+|+|.||||||||+|+|.+.... ....+..+.+.....+.+++  ..+.+|||||.. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 22333344444445555554  468899999987 65432        2456


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|++++.+.+.. .++..+     .+.|+++|+||+|+.+.  ....+...+. ..+.+++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            8899999999999987666553 333332     37789999999999653  2333333332 2346899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 029103          160 VNELFYEIAKRLAE  173 (199)
Q Consensus       160 v~~~~~~l~~~~~~  173 (199)
                      ++++|++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=2.1e-22  Score=153.09  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=107.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc---------ccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~---------~~~~~~~   77 (199)
                      ....+|+|+|++|||||||+|+|.+..... ...+...........  .....++.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999876432 111111111112222  2234578899999987         2344556


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS  156 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      .++..+|++++|+|+++   +.....++.....  ..+.|+++++||+|+.............+...++. .++++|+++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            77899999999999976   2222223322222  35789999999999875222223334455555665 699999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      ++|++++++.|.+.+.+.
T Consensus       159 g~~v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLPEA  176 (301)
T ss_dssp             TTTHHHHHHHHHTTCCBC
T ss_pred             CCCHHHHHHHHHHhCCcC
Confidence            999999999998876553

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=3.3e-22  Score=163.72  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=111.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC--CCCC-----------CcCccceeEEEEEEEe-----CCeEEEEEEEeCCCccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQER   71 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~   71 (199)
                      ..+|+|+|+.++|||||+++|+...  ....           .....+.+.......+     ++..+.+++|||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            5799999999999999999998632  1110           0111223332222222     45568999999999999


Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS---  148 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---  148 (199)
                      |...+...+..+|++|+|+|+++..+.+....|+....    .+.|+++++||+|+.+..  .......+....++.   
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence            99888889999999999999998766666666655442    467899999999997643  233445666666764   


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          149 FLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ++++||++|.|++++|++|.+.+....
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             EEEeecccCCCchhHHHHHhhcCCCcc
Confidence            899999999999999999998876543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=1.8e-21  Score=151.23  Aligned_cols=163  Identities=18%  Similarity=0.111  Sum_probs=109.7

Q ss_pred             eeE-EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc---------cccccccc
Q 029103           10 QVK-LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMY   79 (199)
Q Consensus        10 ~~~-i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~---------~~~~~~~~   79 (199)
                      .++ |+++|.+|||||||+|+|.+...........+.+.....+.+++  ..+.+|||+|...         +...+ ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            345 99999999999999999998765322233333344455566666  4678999999622         22222 24


Q ss_pred             ccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHh---CCcEEEec
Q 029103           80 YRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQEN---GLSFLETS  153 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~s  153 (199)
                      +..+|++++|+|++++.  ..+....|...+......+.|+++|+||+|+.+..... ......+....   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            68899999999999876  55565666666666555688999999999986532100 11222233444   34689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 029103          154 AKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      ++++.|+++++++|.+.+....
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHhcccC
Confidence            9999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=1.8e-22  Score=161.04  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=102.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------ccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY   79 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~--------~~~   79 (199)
                      ..++|+++|++|||||||+|+|.+.... ....+..+.+.....+..++  ..+.+|||||+..+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999999999999986432 22223333333333444454  457899999986654332        336


Q ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103           80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN  159 (199)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|.+++.+... ..|+..+.     ..|+++|+||+|+.+......  ...+  ..+.+++++|+++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~--~~~~--~~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLITS--LEYP--ENITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGSTT--CCCC--TTCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhHH--HHHh--ccCCcEEEEECCCCCC
Confidence            788999999999998755444 45555442     368999999999976544331  1111  1356899999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 029103          160 VNELFYEIAKRLAEVN  175 (199)
Q Consensus       160 v~~~~~~l~~~~~~~~  175 (199)
                      +++++++|.+.+....
T Consensus       371 i~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          371 IDSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999887643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=1.9e-21  Score=159.01  Aligned_cols=161  Identities=17%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC-----C------cCccceeEEE--EEEEe---CCeEEEEEEEeCCCc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----Q------ESTIGAAFFT--QVLSL---NEVTIKFDIWDTAGQ   69 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~v~l~d~~g~   69 (199)
                      ....+|+++|+.++|||||+++|+..  .....     .      ....+++...  ....+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34679999999999999999999862  11110     0      0011111111  11111   455689999999999


Q ss_pred             ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--
Q 029103           70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--  147 (199)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  147 (199)
                      ..|...+...+..+|++|+|+|++++.+.+....|.....    .+.|+++++||+|+.+..  .......+....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888888999999999999998766666666655442    478899999999997643  23344556666666  


Q ss_pred             -cEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          148 -SFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       148 -~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                       .++++||++|.|++++|++|.+.+...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence             489999999999999999999888654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=2.1e-21  Score=150.48  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD  126 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  126 (199)
                      .+.+.+||++|++.+...|..++.+++++|+|||+++          ..+++....|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4778999999999999999999999999999999998          678999889998887653 47899999999999


Q ss_pred             Ccccc----------------cCCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          127 LEEKR----------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       127 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                      +.+..                ..+..++..++.           ..++.++++||+++.|++++|+++.+.+.+..
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            86432                245666666551           34678999999999999999999999987654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=6.5e-22  Score=159.40  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=99.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CC---------------------------CCcCccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|.+++|||||+++|+....  ..                           ......+++.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3579999999999999999999986411  00                           001112333333333444556


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      ..+.+|||||++.|...+..++..+|++|+|+|++++.+.      .+....+......  ...|+++++||+|+.+..+
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence            7899999999999999999999999999999999986432      2222333333322  2356999999999876322


Q ss_pred             CCHHH----HHHHHHHh-----CCcEEEeccCCCCCHHH
Q 029103          133 VKNEE----GELYAQEN-----GLSFLETSAKSAHNVNE  162 (199)
Q Consensus       133 ~~~~~----~~~~~~~~-----~~~~~~~s~~~~~~v~~  162 (199)
                      ....+    ...+....     +++++++||++|+|+.+
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            22222    22233333     45799999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=4.2e-23  Score=164.44  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--------cccccccccccC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYRG   82 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~~~~   82 (199)
                      .+|+++|.+|||||||+|+|.+.... ......++++..........+..+.+|||||++        .+...+..++..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            68999999999999999999976543 234455555555555555556679999999985        455566778899


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN  161 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  161 (199)
                      +|++++|+|+.++.+...  .++..+..  ..+.|+++++||+|+.+....    ..++. ..++ .++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999987654433  22222222  357899999999998653211    11122 3454 78999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 029103          162 ELFYEIAKRLAEV  174 (199)
Q Consensus       162 ~~~~~l~~~~~~~  174 (199)
                      +++++|.+.+.+.
T Consensus       154 ~L~~~i~~~l~~~  166 (436)
T 2hjg_A          154 DLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHTGGGC
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999988653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=4.5e-21  Score=152.65  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=104.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCC---------------------------CcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~   57 (199)
                      ....++|+++|++++|||||+++|+....  ...                           .....+++.......+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35689999999999999999999965311  000                           0111233444444444555


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK  130 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  130 (199)
                      ...+.+|||||++.|...+...+..+|++|+|+|+++...   +   .+....+..+..   .+.| +++++||+|+.+.
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence            5689999999999999888888999999999999987532   1   122333333332   2455 8999999998532


Q ss_pred             c------cCCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 029103          131 R------KVKNEEGELYAQENG------LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       131 ~------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  165 (199)
                      .      +....+...+....+      ++++++||++|+|+.++++
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            1      111222334444443      5799999999999999765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.1e-22  Score=141.51  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=89.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC--
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG--   82 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~--   82 (199)
                      ...++|+++|++|||||||+++|.+..+...   ..++.+         .......+.+||+||++.+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            5678999999999999999999998765431   111111         12244678899999999988888777766  


Q ss_pred             --CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccc
Q 029103           83 --AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        83 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~  132 (199)
                        +|++++|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence              89999999999 899998888888776543    346899999999999976543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.8e-22  Score=151.64  Aligned_cols=162  Identities=15%  Similarity=0.211  Sum_probs=92.5

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-C-------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccc------
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~------   72 (199)
                      +...++|+|+|.+|+|||||+|+|++...... +       .++.+.+........++..+.+.+|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            45689999999999999999999887654332 2       344444444444444555578999999997322      


Q ss_pred             -cccc-------cccc-------------cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           73 -HSLA-------PMYY-------------RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        73 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                       ..+.       ..++             ..+|+++++++.++......-..++..+..    +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence             1111       1112             237789999977652211222334444432    78999999999986433


Q ss_pred             cCCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          132 KVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      +...  .........++++++.+|+++++|+.+++++|.+.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            3221  2334445567899999999999999999999887653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.9e-23  Score=168.74  Aligned_cols=162  Identities=17%  Similarity=0.178  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ...+|+++|++++|||||+++|.+..+.....+..+.+......... ....+.||||||++.|..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            35789999999999999999999865543333333333222222221 22368899999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHH---HHHh--CCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELY---AQEN--GLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~  162 (199)
                      |+|+++....+. ..++..+.   ..+.|+++++||+|+.+..... ......+   ...+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt-~e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQT-VESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHH-HHHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHH-HHHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999997543333 23333333   3467899999999986432111 1111111   0111  24799999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 029103          163 LFYEIAKRLAEVN  175 (199)
Q Consensus       163 ~~~~l~~~~~~~~  175 (199)
                      +|++|...+....
T Consensus       158 Lle~I~~l~~~~~  170 (537)
T 3izy_P          158 LAEATIALAEMLE  170 (537)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhccc
Confidence            9999998876443

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=1.2e-20  Score=154.67  Aligned_cols=160  Identities=22%  Similarity=0.193  Sum_probs=107.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----cCccceeEEEEEE------------EeCCeEEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ...+|+++|++++|||||+++|.+..+....    ..+.+........            ........+.+|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4679999999999999999999876443211    1122211111000            00011125899999999999


Q ss_pred             cccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------------HH
Q 029103           73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------------NE  136 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~~  136 (199)
                      ..++...+..+|++|+|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.......             ..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9999989999999999999998   55554433    2222   478899999999986432110             00


Q ss_pred             ----------HHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103          137 ----------EGELYAQENG---------------LSFLETSAKSAHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       137 ----------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~  175 (199)
                                +......+.+               .+++++||++|.|+++++++|...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                      0111111222               37999999999999999999999886543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.9e-22  Score=156.83  Aligned_cols=164  Identities=13%  Similarity=0.210  Sum_probs=91.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-------~~   71 (199)
                      ...++|+|+|++|+|||||+++|.+..... ...        ++.+...........+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            457899999999999999999987654322 111        23333333333334556678999999998       55


Q ss_pred             cccccc-------ccccCC-------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           72 YHSLAP-------MYYRGA-------------AAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        72 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      +..++.       .++..+             ++++|+++.+ ..++..+. .|+..+    ..+.|+++|+||+|+.+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            555554       444333             3455554431 23343332 343333    467899999999999765


Q ss_pred             ccCCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103          131 RKVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS  177 (199)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~  177 (199)
                      .++..  .....++..++++++++|++++.+ ++.|.++.+.+.+..|-
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            54433  355666667789999999999999 99999999998877654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=5.2e-21  Score=152.54  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=105.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----------   76 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-----------   76 (199)
                      ..++|+|+|++|||||||+|+|.+.... ....+..+.+.....+..++.  .+.+|||+|...+....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999986532 112222223333344455554  57899999975432211           


Q ss_pred             -cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-HH----HHHhCCcEE
Q 029103           77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-LY----AQENGLSFL  150 (199)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~  150 (199)
                       ..++..+|++++|+|+++..+.+.. .+...+..   .+.|+++++||+|+.+.......+.. .+    ....+.+++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2346778999999999876544432 23333332   47889999999998764433332221 22    223457899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          151 ETSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      ++||++|.|++++|+.+.+.+.....
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~~~  358 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASYTT  358 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhcc
Confidence            99999999999999999988876543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=3.8e-22  Score=157.60  Aligned_cols=150  Identities=15%  Similarity=0.175  Sum_probs=103.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHhC--------CCCCC-------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .....++|+++|++++|||||+++|.+.        .+...       .....+.+.......+......+.+|||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3456899999999999999999999873        11110       00122333333444455555678999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc-C--CHHHHHHHHHHhC
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK-V--KNEEGELYAQENG  146 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~--~~~~~~~~~~~~~  146 (199)
                      +|...+...+..+|++|+|+|+++... .+...++..+...   +.| +++++||+|+.+... .  ...+...+...++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888888999999999999987542 3445566555543   567 789999999874211 1  1223445555555


Q ss_pred             -----CcEEEeccCCCCC
Q 029103          147 -----LSFLETSAKSAHN  159 (199)
Q Consensus       147 -----~~~~~~s~~~~~~  159 (199)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=1.7e-21  Score=153.45  Aligned_cols=161  Identities=16%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC-------CCC-------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~   74 (199)
                      +.++|+++|++++|||||+++|.+..       +..       ......+.+.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            47899999999999999999998741       100       0011223333333344444556789999999999988


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHhC----
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG----  146 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  146 (199)
                      .+...+..+|++|+|+|+++.... +...++..+..   .+.| +++++||+|+.+...   ....+...+...++    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999875322 22333344433   3567 689999999874211   11234455666655    


Q ss_pred             -CcEEEeccCCCCC----------HHHHHHHHHHHHHh
Q 029103          147 -LSFLETSAKSAHN----------VNELFYEIAKRLAE  173 (199)
Q Consensus       147 -~~~~~~s~~~~~~----------v~~~~~~l~~~~~~  173 (199)
                       ++++++||++|.+          +.++++.|.+.+..
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence             5899999999764          78888888776653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=6.5e-22  Score=160.22  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC------------------CCCCC--cCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFDFQ--ESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~d~~g   68 (199)
                      ...+|+|+|++|+|||||+++|+...                  ..+..  ....+.+.......+......+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            46899999999999999999996211                  00000  00011222222233333457899999999


Q ss_pred             cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      +..|...+..+++.+|++|+|+|++++........| ..+..   .++|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999899999999999999999986555554333 33332   4789999999999864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=4.4e-21  Score=152.68  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC----------cCc-------------------cceeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ----------EST-------------------IGAAFFTQVLSLNE   56 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~----------~~~-------------------~~~~~~~~~~~~~~   56 (199)
                      ...++|+++|++++|||||+++|++...  ....          ..+                   .+++.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4579999999999999999999986531  1000          000                   11122122223334


Q ss_pred             eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--C-
Q 029103           57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--V-  133 (199)
Q Consensus        57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~-  133 (199)
                      ....+.+|||||++.|...+..++..+|++|+|+|++++. ..+...++..+...  ...|+++++||+|+.+...  . 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            4567899999999999888888899999999999998753 23334454444433  2236899999999975211  1 


Q ss_pred             -CHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 029103          134 -KNEEGELYAQENG-----LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       134 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  165 (199)
                       ...+...+...++     ++++++||++|+|+.++++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             1233455566666     6799999999999988543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=1.6e-21  Score=151.94  Aligned_cols=147  Identities=10%  Similarity=0.084  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      +|+++|++++|||||+++|+        ...++++..  ...+......+.+|||||+++|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~--~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDIT--MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSE--EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEee--EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999987        111111212  22344445579999999999998777778899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCcccccCCH--HHHHHHHHHh---CCcEEE--eccCC---CCC
Q 029103           92 ITSMDSFERAKKWVQELQRQGNPNLIM-FLVAN-KVDLEEKRKVKN--EEGELYAQEN---GLSFLE--TSAKS---AHN  159 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~---~~~  159 (199)
                       ++ ..+.+..+++..+...   +.|. ++++| |+|+ +......  .+...+....   .+++++  +||++   ++|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 4455556666655544   4566 88888 9998 4332211  2334444333   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029103          160 VNELFYEIAKRLAEV  174 (199)
Q Consensus       160 v~~~~~~l~~~~~~~  174 (199)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999987653

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=3.2e-21  Score=147.54  Aligned_cols=118  Identities=16%  Similarity=0.222  Sum_probs=95.4

Q ss_pred             CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeC
Q 029103           56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANK  124 (199)
Q Consensus        56 ~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK  124 (199)
                      ...+.+++||++|++.+...|..++++++++|+|||++          +..+++....|+..+.... ..+.|+++++||
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence            34578999999999999999999999999999999998          6788888888888887654 478999999999


Q ss_pred             CCCcccc---------------cCCHHHHHHHHH-Hh--------------------------CCcEEEeccCCCCCHHH
Q 029103          125 VDLEEKR---------------KVKNEEGELYAQ-EN--------------------------GLSFLETSAKSAHNVNE  162 (199)
Q Consensus       125 ~D~~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~s~~~~~~v~~  162 (199)
                      +|+.+..               .....++..+.. ..                          ++.++++||+++.+++.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            9985421               113444433332 22                          46789999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|+.+.+.+.+
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.84  E-value=1.8e-22  Score=160.68  Aligned_cols=155  Identities=19%  Similarity=0.236  Sum_probs=103.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCC---------------------------cCccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ---------------------------ESTIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|++++|||||+++|+..  .+....                           ....+.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45799999999999999999999864  222110                           0011222222223344455


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHH-------HHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-------WVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-------~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ..+.+|||||+++|...+..++..+|++|+|+|+++ .+++....       ++......  ...|+++++||+|+.+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            679999999999999888889999999999999998 66664332       22222222  224589999999987521


Q ss_pred             ------cCCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 029103          132 ------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       132 ------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  165 (199)
                            +....+...+....+     ++++++||++|+|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  111234555555555     6799999999999986654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=4.3e-20  Score=144.28  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD  126 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  126 (199)
                      .+.+.+||++|++.+...|..++++++++|+|||+++          ..+++....|+..+.... ..+.|+++++||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3789999999999999999999999999999999998          889999999999988753 47899999999999


Q ss_pred             Cccccc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEeccCCCCCHHHH
Q 029103          127 LEEKRK---V---------------------------KNEEGELYA-----QE--------NGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus       127 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~~  163 (199)
                      +.+...   .                           ...++..++     ..        .++.++++||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            864322   1                           124444442     22        2466789999999999999


Q ss_pred             HHHHHHHHHhh
Q 029103          164 FYEIAKRLAEV  174 (199)
Q Consensus       164 ~~~l~~~~~~~  174 (199)
                      |+++.+.+.+.
T Consensus       376 F~~v~~~I~~~  386 (402)
T 1azs_C          376 FNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=1.1e-21  Score=157.14  Aligned_cols=156  Identities=16%  Similarity=0.147  Sum_probs=102.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC--------cccccccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--------QERYHSLAPMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g--------~~~~~~~~~~~~   80 (199)
                      ...+|+|+|.+|||||||+|+|.+..+. ......+++..............+.+|||||        ++.+...+..++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            4679999999999999999999986543 2344556666666666666677899999999        555666777888


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN  159 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  159 (199)
                      ..+|++|+|+|..+.....  ..++..+..  ..+.|+++|+||+|+.+...    ...++. ..+ ..++++||++|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence            9999999999987642222  223322222  25789999999999864321    111111 223 2578999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 029103          160 VNELFYEIAKRLAEV  174 (199)
Q Consensus       160 v~~~~~~l~~~~~~~  174 (199)
                      +.++++.+.+.+...
T Consensus       172 v~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          172 LGDLLDAVAEHFKNI  186 (456)
T ss_dssp             HHHHHHHHHTTGGGS
T ss_pred             hHHHHHHHHhhcccc
Confidence            999999998877643

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=1.4e-20  Score=161.41  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=109.0

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC-------CCC-------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ....++|+++|++++|||||+++|.+..       +..       ......++++......+......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3468999999999999999999998741       000       01122333333223344445577899999999999


Q ss_pred             cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHhC--
Q 029103           73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG--  146 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  146 (199)
                      ...+...+..+|++|+|+|+++.. +.+...++..+...   ++| +++++||+|+.+....   ...+...+....+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            888888899999999999998753 22334455544443   566 7899999999752211   1234455666655  


Q ss_pred             ---CcEEEeccCCC--------CCHHHHHHHHHHHHH
Q 029103          147 ---LSFLETSAKSA--------HNVNELFYEIAKRLA  172 (199)
Q Consensus       147 ---~~~~~~s~~~~--------~~v~~~~~~l~~~~~  172 (199)
                         ++++++||++|        .|+.++++.|.+.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence               68999999999        457778877776554

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.82  E-value=3.3e-21  Score=154.54  Aligned_cols=154  Identities=17%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC---------------------------CcCccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF---------------------------QESTIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|++++|||||+++|+..  .+...                           .....+.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45799999999999999999999752  11100                           00011112211111222234


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  131 (199)
                      ..+.+|||||++.|...+...+..+|++|+|+|+++..   +|+   +....+.....   .++| +++++||+|+.+..
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence            67899999999999988888899999999999999762   222   22222222222   3566 89999999995421


Q ss_pred             ------cCCHHHHHHHHHHh-------CCcEEEeccCCCCCHHHHH
Q 029103          132 ------KVKNEEGELYAQEN-------GLSFLETSAKSAHNVNELF  164 (199)
Q Consensus       132 ------~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~  164 (199)
                            +....+...+....       +++++++|+++|+|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  11122345555554       4569999999999998766

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=1.3e-21  Score=156.91  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ...+|+++|++++|||||+++|.+..+.....+.++.+.....  +......+.+|||||++.|..++...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4678999999999999999999876544332222222221111  22223468899999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHH--HHHHHHHHh--CCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNE--EGELYAQEN--GLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~s~~~~~~v~~  162 (199)
                      |+|+++... .+...++.....   .+.|+++++||+|+.+..  .+...  +...+...+  .++++++||++|.|+++
T Consensus        81 VVda~~g~~-~qT~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVM-PQTIEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSC-TTTHHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCcc-HHHHHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            999987321 111222233322   467899999999996421  11100  000111122  26899999999999999


Q ss_pred             HHHHHHHH
Q 029103          163 LFYEIAKR  170 (199)
Q Consensus       163 ~~~~l~~~  170 (199)
                      +|++|...
T Consensus       157 Lle~I~~~  164 (501)
T 1zo1_I          157 LLDAILLQ  164 (501)
T ss_dssp             HHHHTTTT
T ss_pred             hhhhhhhh
Confidence            99998753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.82  E-value=7.8e-21  Score=152.01  Aligned_cols=153  Identities=12%  Similarity=0.169  Sum_probs=101.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC-----------------------C----cCccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----------------------Q----ESTIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~-----------------------~----~~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|++++|||||+++|++.  .+...                       .    ....+++.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            46899999999999999999999864  11110                       0    0001122211122334445


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCc-eEEEEEeCCCCccc-
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNL-IMFLVANKVDLEEK-  130 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~-  130 (199)
                      ..+.+|||||++.|...+..++..+|++|+|+|+++..   +++   +...++......   +. ++++++||+|+.+. 
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~~  161 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD  161 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccCC
Confidence            67999999999999888888899999999999998753   121   333333333322   44 48999999998731 


Q ss_pred             -cc--CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 029103          131 -RK--VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL  163 (199)
Q Consensus       131 -~~--~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                       ..  ....+...+...++     ++++++||++|+|+.++
T Consensus       162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence             11  11233445555555     68999999999998754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.5e-20  Score=154.83  Aligned_cols=154  Identities=17%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-----------------------------CccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------------------STIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|++++|||||+++|++....-...                             ...+++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457999999999999999999998642211000                             001223222223333445


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      ..+.+|||||++.|...+..++..+|++|+|+|++++..      ..+....+......  ...|+++++||+|+.+..+
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence            688999999999999888889999999999999987421      11222222222222  2345899999999875221


Q ss_pred             CC----HHHHHHHHHHh-----CCcEEEeccCCCCCHHHH
Q 029103          133 VK----NEEGELYAQEN-----GLSFLETSAKSAHNVNEL  163 (199)
Q Consensus       133 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~  163 (199)
                      ..    ......+....     +++++++||++|+|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            11    12223333333     358999999999999876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=5.9e-20  Score=132.48  Aligned_cols=156  Identities=13%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAPM   78 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~~~   78 (199)
                      ...+|+++|++|||||||+++|.+..+.....++.+...........+   .+.+||+||...          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            467999999999999999999987654333344444443333333322   467999999742          1222223


Q ss_pred             cc---cCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhC--CcE
Q 029103           79 YY---RGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LSF  149 (199)
Q Consensus        79 ~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~  149 (199)
                      ++   ..++++++++|++++.+..  .+..|+.   .   .+.|+++++||+|+.+..+.  ....+..+....+  +.+
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            33   4688999999998754432  2223322   2   36788999999998653221  1233444444443  567


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHh
Q 029103          150 LETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +++|++++.|+++++++|.+.+.+
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEEeecCCCCHHHHHHHHHHHHhh
Confidence            899999999999999999888754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=1e-18  Score=137.45  Aligned_cols=161  Identities=17%  Similarity=0.138  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccc---ccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~---~~~~d   84 (199)
                      .|+|+|++|||||||+++|++....-...+..+.......+..++ ...+.+||+||...    +..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987643211111111122222333333 24678999999743    22232323   35689


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      .+++++|++ ...+..+..+..++....  ....|.++++||.|+... . ............+.+++.+||++++|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 555677777776665543  135788999999998754 1 22333444455678999999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 029103          163 LFYEIAKRLAEVNP  176 (199)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (199)
                      ++++|.+.+.+...
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999987653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=3.3e-20  Score=140.85  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc----Cccce----------------------eEE-------------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE----STIGA----------------------AFF-------------   48 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~----~~~~~----------------------~~~-------------   48 (199)
                      ...++|+|+|.+|||||||+|+|++..+.+...    ...+.                      +..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999999877642211    01110                      000             


Q ss_pred             ----------EEEEE-eCCeEEEEEEEeCCCcc-------------cccccccccccCCCEEE-EEEECCCHHHHHHHHH
Q 029103           49 ----------TQVLS-LNEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDITSMDSFERAKK  103 (199)
Q Consensus        49 ----------~~~~~-~~~~~~~v~l~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  103 (199)
                                ...+. .......+.+|||||..             .+...+..++..++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      00000 00112578999999964             23345566788888766 7999987544333233


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH--hC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NG-LSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ++..+   ...+.|+++|+||+|+.+...............  .+ .+++++||++|.|++++|++|.+..
T Consensus       184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            44433   235789999999999876443222221110001  12 3578999999999999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=1.7e-18  Score=129.12  Aligned_cols=120  Identities=16%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-----
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-----   81 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~-----   81 (199)
                      ...++|+++|.+|+|||||+++|++...... .................  +..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3589999999999999999999998764221 11222222233333333  347899999999877665544443     


Q ss_pred             ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCcc
Q 029103           82 ----GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEE  129 (199)
Q Consensus        82 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~  129 (199)
                          .+|++++|+++++.........|+..+......+  .|+++|+||+|+.+
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                7899999999876442122246666666543332  48999999999854

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=9.6e-19  Score=145.57  Aligned_cols=117  Identities=18%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----------------ccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~   71 (199)
                      ....+|+|+|+.|+|||||+++|++.........                ..++++......+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            3467999999999999999999995332100000                012233333333333457899999999999


Q ss_pred             ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      |...+..++..+|++++|+|+++...... ..++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            98888889999999999999876533222 344444444   368899999999986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=2.2e-20  Score=153.40  Aligned_cols=151  Identities=19%  Similarity=0.207  Sum_probs=81.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC---------------------------CcCccceeEEEEEEEeCCeE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF---------------------------QESTIGAAFFTQVLSLNEVT   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   58 (199)
                      ...++|+++|++++|||||+++|+...  ....                           .....++++......+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            457899999999999999999996421  0000                           00112333333334444456


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---S---FERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  131 (199)
                      ..+.||||||++.|...+...+..+|++|+|+|++++.   .   ..+....+..+...   +.| +++++||+|+.+..
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~  331 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWS  331 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTC
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccccc
Confidence            78999999999999998888999999999999998532   1   11222333333332   444 88999999986521


Q ss_pred             cCC----HHHHHHHH-HHhCC-----cEEEeccCCCCCHH
Q 029103          132 KVK----NEEGELYA-QENGL-----SFLETSAKSAHNVN  161 (199)
Q Consensus       132 ~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~  161 (199)
                      ...    ..+...+. ...++     +++++||++|+|+.
T Consensus       332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            111    12223333 33344     69999999999998

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=1.2e-18  Score=145.37  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC--C------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--Q------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      .....+|+|+|++|+|||||+++|+...  +...  .            ....+.+.......+....+.+++|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            3568999999999999999999998421  1000  0            0011111111122222235789999999999


Q ss_pred             cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .|...+..++..+|++|+|+|+++.........|.. +..   .+.|+++++||+|+..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            998888889999999999999998766655544443 333   3788999999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=1.8e-19  Score=140.29  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee---EEE----------E--------------------------
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA---FFT----------Q--------------------------   50 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~---~~~----------~--------------------------   50 (199)
                      -.+|+|+|.+|||||||+++|.+..+.+......+..   ...          .                          
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            3499999999999999999999876533322211100   000          0                          


Q ss_pred             -------------EEE-eCCeEEEEEEEeCCCcccc-------------cccccccccCCCEEEEEEECCCHHHHHHHHH
Q 029103           51 -------------VLS-LNEVTIKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDITSMDSFERAKK  103 (199)
Q Consensus        51 -------------~~~-~~~~~~~v~l~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  103 (199)
                                   ... .......+.+|||||...+             ..+...++..+|++|+|++..+.+...  ..
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                         000 0111235889999998765             345667899999999999876433221  23


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103          104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |+..+......+.|+++|+||+|+.+...........+...++.+|+.+++.++.++++.+..+..
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            444455544567889999999999765444443344444456788999999998888776554433

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=1.9e-18  Score=129.45  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=80.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccc---------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM---------   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~---------   78 (199)
                      ...++|+++|.+|+|||||+|+|++..+... ....+.+.......+......+.+|||||...+......         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3589999999999999999999998765321 112222222222233334567999999998766533221         


Q ss_pred             cccCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCcccc
Q 029103           79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEKR  131 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~  131 (199)
                      ....+|++++|+|++.. ++.. ...|+..+......+  .|+++|+||+|+....
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            13468999999998653 2322 246666666543333  6899999999986543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=3.6e-18  Score=142.72  Aligned_cols=162  Identities=14%  Similarity=0.188  Sum_probs=104.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccce------------eEE---------------------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGA------------AFF---------------------------   48 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~------------~~~---------------------------   48 (199)
                      ..++|+|+|.+|+|||||+|+|++....+. ..++...            +..                           
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            478999999999999999999998664321 1111100            000                           


Q ss_pred             --------------EEEEEeCCeE--EEEEEEeCCCccc---ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q 029103           49 --------------TQVLSLNEVT--IKFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ  109 (199)
Q Consensus        49 --------------~~~~~~~~~~--~~v~l~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  109 (199)
                                    ...+......  ..+.+|||||...   ....+..++..+|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                          0000000000  2588999999765   33455678899999999999988766666555544432


Q ss_pred             HhCCCCceEEEEEeCCCCcccccCCHH----------HHHH-----HHHH--------hCCcEEEeccC-----------
Q 029103          110 RQGNPNLIMFLVANKVDLEEKRKVKNE----------EGEL-----YAQE--------NGLSFLETSAK-----------  155 (199)
Q Consensus       110 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~s~~-----------  155 (199)
                         ..+.|+++|+||+|+......+..          ....     +...        ...+++++|++           
T Consensus       228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence               236679999999998654311110          0111     1111        12469999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHh
Q 029103          156 ---SAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       156 ---~~~~v~~~~~~l~~~~~~  173 (199)
                         ++.|++++++.|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999987754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=4.1e-18  Score=138.18  Aligned_cols=118  Identities=15%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-C-------------------CcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-F-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTA   67 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~   67 (199)
                      ....+|+|+|++|+|||||+++|+.....- .                   .....+.+.......+......+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            357899999999999999999998631100 0                   00111122211222333345789999999


Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      |+..|...+..++..+|++|+|+|+++.... ....++....   ..+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999988888889999999999999875322 2223333322   35788999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=1.3e-17  Score=139.36  Aligned_cols=125  Identities=18%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC--C------------cCccceeEEEEEEEeC-------Ce
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--Q------------ESTIGAAFFTQVLSLN-------EV   57 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~~-------~~   57 (199)
                      |++..+.....+|+|+|+.|+|||||+++|+...  +...  .            ....+.+.......+.       +.
T Consensus         1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~   80 (704)
T 2rdo_7            1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE   80 (704)
T ss_pred             CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence            5554445668999999999999999999997531  1110  0            0011222222222222       23


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .+.++||||||+..|...+..++..+|++|+|+|+++.........| .....   .+.|+++++||+|+..
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            38899999999999988888899999999999999976544443333 33322   4788999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=2.9e-18  Score=143.24  Aligned_cols=125  Identities=19%  Similarity=0.207  Sum_probs=85.6

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHh--CCCCCCC---cC-----------ccceeEEEEEEEeCCeEEEEEEE
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ---ES-----------TIGAAFFTQVLSLNEVTIKFDIW   64 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~v~l~   64 (199)
                      |++..+.....+|+|+|++|+|||||+++|+.  +.+....   ..           ..+++.......+......+++|
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li   80 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII   80 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence            67777777789999999999999999999985  2211000   00           01111111112222234679999


Q ss_pred             eCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           65 DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        65 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      ||||+..+...+..++..+|++|+|+|+++..+......|. .+..   .+.|+++++||+|+..
T Consensus        81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            99999998888888899999999999999876555544443 3433   3788999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=1.2e-19  Score=137.76  Aligned_cols=164  Identities=14%  Similarity=0.188  Sum_probs=87.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC-CCCCCCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-------~~   71 (199)
                      ...++|+|+|++|+|||||+++|.+. .+.....        ++.............+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            46799999999999999999998875 3332211        11111111122222344568999999997       44


Q ss_pred             cccccc-------cccc-------------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           72 YHSLAP-------MYYR-------------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        72 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      +..+..       .++.             .+++++|..+.+. .+++...  ...+... ....|+++|+||.|+.+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence            443332       2222             2334555555432 1122221  1222222 3467899999999987543


Q ss_pred             cC--CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          132 KV--KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      +.  ...++..++..++++++++||+++ +++++|.++.+.+.+..|
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            32  234667788889999999999999 999999999999977654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=2.4e-18  Score=131.58  Aligned_cols=113  Identities=16%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103           59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK  124 (199)
Q Consensus        59 ~~v~l~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK  124 (199)
                      ..+.+|||||...             +...+..++..+|++++|+|.++.... .....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4689999999753             334456678999999999997432211 1111222222   2357899999999


Q ss_pred             CCCcccccCCHHHHHHHHHHhCCcEEEeccCC------CCCHHHHHHHHHHHHHhh
Q 029103          125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKS------AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~~~~l~~~~~~~  174 (199)
                      +|+.+................+..++++++..      +.|+.++++.+.+.+...
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99875443212211110011225677776554      688999999999888764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=6.6e-18  Score=133.00  Aligned_cols=160  Identities=16%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-----
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-----   74 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-----   74 (199)
                      ...++|+|+|++|+|||||+++|++..+.....        ++.............+....+.+||++|...+..     
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            457899999999999999999999876531111        1111111111112223345789999999764311     


Q ss_pred             --------------------cccccccCCCEEEEEEECCCH-HHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           75 --------------------LAPMYYRGAAAAVVVYDITSM-DSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        75 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                                          +...++..+++.+++|..... .+++.. ..|+..+.    .+.|+++|+||+|+.+..+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence                                223445555544444443321 223332 25555553    3789999999999876554


Q ss_pred             CCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          133 VKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      +..  ..+...+..++++++++|+++++++.++|..|...+
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            443  456777778899999999999999999887777654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=2.9e-18  Score=134.55  Aligned_cols=85  Identities=19%  Similarity=0.067  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEE--E-------------------EeCC-eEEEEEEEeCCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV--L-------------------SLNE-VTIKFDIWDTAG   68 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~v~l~d~~g   68 (199)
                      ++|+|+|.||||||||+|+|.+........+..+.+.....  .                   .+.+ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999986522111111111111111  1                   1122 247899999999


Q ss_pred             cccc----ccccc---ccccCCCEEEEEEECCCH
Q 029103           69 QERY----HSLAP---MYYRGAAAAVVVYDITSM   95 (199)
Q Consensus        69 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~   95 (199)
                      ....    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8532    22222   457899999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.72  E-value=3.6e-18  Score=129.78  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             HHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH-HHHHHH
Q 029103           25 SLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAK  102 (199)
Q Consensus        25 sL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  102 (199)
                      +|+.++..+.|. ..+.++++..+. .....++   .+.+||+  +++|..+++.+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            677888878887 777888884443 2222222   6889999  8899999999999999999999999987 678888


Q ss_pred             HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHH
Q 029103          103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       103 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      .|+..+..   .+.|+++|+||+|+.+...+  .+...++..++  ++++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887765   47899999999999764432  34566666777  89999999999999999987653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=5.7e-17  Score=117.75  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee--------------EEEEEEEe----------------CCeEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--------------FFTQVLSL----------------NEVTI   59 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~~   59 (199)
                      ..+|+++|.+|||||||+++|...............+              ........                .....
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            5689999999999999999998753211100000000              00011100                11234


Q ss_pred             EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 029103           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE  139 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  139 (199)
                      .+.+|||+|.....   ..+....+.+++|+|+++...  ....+...      .+.|+++++||+|+.+..........
T Consensus       110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHHH
Confidence            67789988841100   011125688999999876432  11111111      13568999999998754333455555


Q ss_pred             HHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          140 LYAQEN--GLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       140 ~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      ......  +.+++++|+++|.|++++|++|.+.+...
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555543  47899999999999999999999887654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.68  E-value=2.6e-17  Score=127.75  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=70.6

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      .+.+.+|||||....   ....+..+|++++|+|....+....+..        .....|+++|+||+|+.+..... ..
T Consensus       171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LA  238 (355)
T ss_dssp             TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred             CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HH
Confidence            367889999995432   2234588999999999876543322221        11245789999999986532221 11


Q ss_pred             HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ...+...          ++.+++++||++|+|+++++++|.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            2222221          25789999999999999999999998865

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.1e-15  Score=118.07  Aligned_cols=85  Identities=18%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc-
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-   73 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~-   73 (199)
                      .++|+++|.||||||||+|+|++........+..+.+.....+.+.+.               ...+.+||+||...+. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            478999999999999999999986632222211111111112233331               2578999999987653 


Q ss_pred             ---cccc---ccccCCCEEEEEEECCC
Q 029103           74 ---SLAP---MYYRGAAAAVVVYDITS   94 (199)
Q Consensus        74 ---~~~~---~~~~~~d~~i~v~d~~~   94 (199)
                         .+..   .+++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               2333   34789999999999985

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=2.7e-16  Score=128.10  Aligned_cols=117  Identities=17%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC------------------CC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG   68 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g   68 (199)
                      ...+|+|+|+.++|||||.++|+...                  +.  ...+...++++......+.+.++.++|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            46899999999999999999996311                  00  01112223333333344455567899999999


Q ss_pred             cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      |..|.......++-+|++|+|+|+.+.-..+....| .....   .++|.++++||+|...
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            999999888899999999999999876444444444 33433   4788999999999743

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.65  E-value=3.1e-18  Score=132.94  Aligned_cols=158  Identities=13%  Similarity=0.130  Sum_probs=92.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc----cceeEE------------------------------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST----IGAAFF------------------------------------   48 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~----~~~~~~------------------------------------   48 (199)
                      ...+|+|+|.+|||||||+|+|++..+.+.....    .+....                                    
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999987764222111    110000                                    


Q ss_pred             ---------EEEEE-eCCeEEEEEEEeCCCccc-------------ccccccccccCCC-EEEEEEECCCHHHHHHHHHH
Q 029103           49 ---------TQVLS-LNEVTIKFDIWDTAGQER-------------YHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKW  104 (199)
Q Consensus        49 ---------~~~~~-~~~~~~~v~l~d~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~  104 (199)
                               ..... .......+.+|||||...             +..+...++...+ ++++|++.+....-.   .+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence                     00000 011135689999999642             2334556666665 445566655422111   22


Q ss_pred             HHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH--HHHHhC-CcEEEeccCCCCCHHHHHHHHHH
Q 029103          105 VQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL--YAQENG-LSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus       105 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ...+......+.|+++|+||+|+.+...........  +...++ .+++.+||+++.|++++++++.+
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            222333334678999999999987543311111110  000112 24678999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=8.6e-18  Score=122.52  Aligned_cols=154  Identities=20%  Similarity=0.229  Sum_probs=90.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE------------EEEEEeC-Ce------------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF------------TQVLSLN-EV------------------   57 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   57 (199)
                      ...+|+|+|.+|||||||+++|....+......+...+..            .....++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            3689999999999999999999986544322222222211            0111111 10                  


Q ss_pred             -EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103           58 -TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        58 -~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                       ...+.++|++|.-...   ..+-...+..+.++|.........  .... +     ...|.++++||+|+.+.......
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~-~-----~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPG-I-----MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHH-H-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhh-H-----hhcCCEEEEeccccCchhHHHHH
Confidence             1134555655521100   011122345566777432111100  0001 1     13568999999998765444555


Q ss_pred             HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +...+....  +.+++++||++|.|++++|++|.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            666665554  5789999999999999999999988765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=1.8e-16  Score=129.17  Aligned_cols=121  Identities=16%  Similarity=0.221  Sum_probs=78.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCC----------------------eE------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNE----------------------VT------   58 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------~~------   58 (199)
                      ....+|+|+|.+|+|||||+|+|++..+.. .......++.......-..                      .+      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            357899999999999999999999877531 1111111111110000000                      00      


Q ss_pred             -----------EEEEEEeCCCccc-----------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc
Q 029103           59 -----------IKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL  116 (199)
Q Consensus        59 -----------~~v~l~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  116 (199)
                                 ..+.+|||||...           +...+..++..+|++++|+|+++....+....++..+.   ..+.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcCC
Confidence                       2588999999864           33455667889999999999987544444555655553   3467


Q ss_pred             eEEEEEeCCCCcccc
Q 029103          117 IMFLVANKVDLEEKR  131 (199)
Q Consensus       117 p~ivv~nK~D~~~~~  131 (199)
                      |+++|+||+|+.+..
T Consensus       220 pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          220 KIRVVLNKADMVETQ  234 (550)
T ss_dssp             GEEEEEECGGGSCHH
T ss_pred             CEEEEEECCCccCHH
Confidence            899999999987543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=116.31  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=63.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      ++.+.++||+|....   .......+|++++|+|.+++...+.+..   .+     -..|.++++||+|+.+.... ...
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            356789999996422   2344678999999999986543222211   11     24577999999998642211 111


Q ss_pred             HHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          138 GELYAQ----------ENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       138 ~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ...+..          .++.+++.+|+++|+|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            122211          124578999999999999999999987753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.61  E-value=1.3e-14  Score=121.74  Aligned_cols=124  Identities=22%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCC--------CC----------CCCcCccceeEEEEEEEeC-----Ce
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--------FF----------DFQESTIGAAFFTQVLSLN-----EV   57 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~-----~~   57 (199)
                      |+++.+-..-.+|+|+|+.++|||||.++|+...        ..          .+....+++......+...     ..
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            7877766677899999999999999999987411        00          0111112222222222222     23


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .+.++|+|||||..|.......++-+|++|+|+|+.+.-..+...-|.. ....   ++|.++++||+|..
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence            6889999999999999888888999999999999987644444334433 3333   77899999999974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=1.8e-15  Score=128.86  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=84.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCC--CC----------C----CCcCccce--eEEEEEEE------------eCCe
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FF----------D----FQESTIGA--AFFTQVLS------------LNEV   57 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~----------~----~~~~~~~~--~~~~~~~~------------~~~~   57 (199)
                      ....+|+|+|++|+|||||+++|+...  ..          +    +..+.+++  ........            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998741  10          0    00111111  11111121            2344


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .+.+++|||||+..|...+..+++.+|++|+|+|++++.+.+....|.... .   .+.|+++++||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence            789999999999999999999999999999999999876666655554333 2   4788999999999863

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=7.9e-15  Score=113.78  Aligned_cols=154  Identities=21%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-------------------VTIKFDIWDTAGQER   71 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~l~d~~g~~~   71 (199)
                      ++|+++|.||||||||+++|.+........+..+.........+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998642211111111111111112221                   245789999999876


Q ss_pred             cc----cccc---ccccCCCEEEEEEECCCH----------HHHHHHHHHHHH---------------------------
Q 029103           72 YH----SLAP---MYYRGAAAAVVVYDITSM----------DSFERAKKWVQE---------------------------  107 (199)
Q Consensus        72 ~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~---------------------------  107 (199)
                      ..    .+..   ..++.+|++++|+|+++.          +.++.+..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            53    2222   347899999999999851          112211110000                           


Q ss_pred             ------------HHH-------------------hC-CCCceEEEEEeCCCCc--cc-ccCCHHHHHHHHHHhCCcEEEe
Q 029103          108 ------------LQR-------------------QG-NPNLIMFLVANKVDLE--EK-RKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus       108 ------------~~~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                                  +..                   .. ....|+++++||.|..  +. ..........++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        000                   00 1347999999999842  21 1223455677778888999999


Q ss_pred             ccCCCCCHHHHH
Q 029103          153 SAKSAHNVNELF  164 (199)
Q Consensus       153 s~~~~~~v~~~~  164 (199)
                      ||+...++.++.
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998755554443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=9.6e-16  Score=118.33  Aligned_cols=104  Identities=18%  Similarity=0.094  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH-
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE-  136 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-  136 (199)
                      .+.+.+|||||......   .....+|++++|+|.+..+.++.+..   ..     .+.|.++|+||+|+.+....... 
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            45789999999754432   24588999999999876543221111   11     13567999999998653221110 


Q ss_pred             -HHHHHHHHh-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          137 -EGELYAQEN-------GLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       137 -~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                       +........       ..+++++|+++|+|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             111111111       356899999999999999999998775

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.55  E-value=3e-14  Score=105.95  Aligned_cols=113  Identities=15%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCccccccccc------ccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           59 IKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      +.+.+|||||...+.....      ..+.. +++++++|...   +..+.....+....  ....+.|+++|+||+|+.+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence            5789999999876543221      13355 88888988753   22222221111111  1123678999999999865


Q ss_pred             cccCCHHHH---------HH-----------------HHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          130 KRKVKNEEG---------EL-----------------YAQENG--LSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       130 ~~~~~~~~~---------~~-----------------~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      ..+......         ..                 +...++  .+++++|+++++|+++++++|.+.+...
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            332110000         01                 123333  4799999999999999999999887653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.54  E-value=9.9e-16  Score=127.00  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC--CCCCC--------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDF--------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~   74 (199)
                      .||+|+|+.++|||||.++|+..  .....              .+..-+++.......+.+.++.++|+|||||..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47999999999999999998741  11100              011113444444555666778899999999999998


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .....++-+|++|+|+|+.+.-..+.. ..+......   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence            888899999999999999876333332 333444444   667899999999743

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.8e-13  Score=105.15  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=97.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-------ccccccC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRG   82 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-------~~~~~~~   82 (199)
                      ..+|+++|.|+||||||+|+|++........+..+.+.....+.+.+  .+++++|+||.......       .-..++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999998664443444445555555555555  46789999997432211       1234678


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--------cccCCHHHHHHHHHHhCCcEEEe
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--------KRKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                      +|++++|+|+++|.  .....+..++....  ....|.++++||.|...        .......+...+...+.+..-++
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            99999999999873  33333333444332  24667789999999742        22345566666666666544444


Q ss_pred             ccCCCCCHHHHHH
Q 029103          153 SAKSAHNVNELFY  165 (199)
Q Consensus       153 s~~~~~~v~~~~~  165 (199)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            4444455555544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.49  E-value=4e-14  Score=118.27  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=94.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccc---eeE--------------------------------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG---AAF--------------------------------------   47 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~---~~~--------------------------------------   47 (199)
                      ...+|+|+|.+++|||||+|+|++..+.+......+   +..                                      
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            356999999999999999999998665322111000   000                                      


Q ss_pred             ----------EEEEEEeCCeEEEEEEEeCCCcccc-------------cccccccc-cCCCEEEEEEECCCHHHHHHHHH
Q 029103           48 ----------FTQVLSLNEVTIKFDIWDTAGQERY-------------HSLAPMYY-RGAAAAVVVYDITSMDSFERAKK  103 (199)
Q Consensus        48 ----------~~~~~~~~~~~~~v~l~d~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  103 (199)
                                ....+.. .....+.|+||||....             ......++ ..+|++++|+|++.+........
T Consensus       130 g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                      0000101 11224789999996541             11223333 57899999999986432222223


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hC-CcEEEeccCCCCCHHHHHHHHHHH
Q 029103          104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NG-LSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      ++..+   ...+.|+++|+||+|+.+..........  ...    .+ .+++.+||++|.|++++++.|.+.
T Consensus       209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            33333   2457899999999999764433221111  001    12 246889999999999999998873

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.48  E-value=6.7e-14  Score=107.73  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE  137 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  137 (199)
                      ++.+.++||+|.....   ......+|.+++++|....+..+.+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            4578899999975322   1235789999999998654322211111   11     12457777999964322111111


Q ss_pred             HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      ...+...          +..+++.+|++++.|++++++.|.+.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2222221          1457899999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.44  E-value=4e-13  Score=101.97  Aligned_cols=97  Identities=19%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             cccccccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhC
Q 029103           69 QERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENG  146 (199)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  146 (199)
                      ++++..+.+.++.++|++++|+|++++. +++.+.+|+..+..   .++|+++|+||+|+.+...+. ..+...+....+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5677778888999999999999999886 78888888887654   578899999999997543222 334455666778


Q ss_pred             CcEEEeccCCCCCHHHHHHHHH
Q 029103          147 LSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      .+++++||++|+|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=2.7e-13  Score=95.94  Aligned_cols=106  Identities=5%  Similarity=-0.112  Sum_probs=68.6

Q ss_pred             CCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHH----HHHhC-CCCceEEEEEeCC-CCcccccCCHHHHH
Q 029103           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE----LQRQG-NPNLIMFLVANKV-DLEEKRKVKNEEGE  139 (199)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~  139 (199)
                      .+|+...+.+|+.|+.++|++|||+|.+|.+.++ .+..+..    +.... ..+.|++|++||. |++..  .+..+..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHH
Confidence            3478889999999999999999999999875443 3322222    22221 3688999999995 67542  2333322


Q ss_pred             HHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          140 LYAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       140 ~~~~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      +...    .+.+.++.|||.+|+|+.+.++||.+.+..+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            2111    2456789999999999999999998877554

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=7.3e-13  Score=103.25  Aligned_cols=87  Identities=9%  Similarity=-0.026  Sum_probs=50.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH   73 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~   73 (199)
                      ..++|+++|.+|||||||+|+|.+........+..+.+.....+.+.+.               ...+.+||+||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4689999999999999999999987543322333333333333333332               2358999999987644


Q ss_pred             c-------cccccccCCCEEEEEEECCCH
Q 029103           74 S-------LAPMYYRGAAAAVVVYDITSM   95 (199)
Q Consensus        74 ~-------~~~~~~~~~d~~i~v~d~~~~   95 (199)
                      .       .+..+++.+|++++|+|+++.
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            3       334568999999999999753

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.32  E-value=4.1e-11  Score=93.54  Aligned_cols=86  Identities=14%  Similarity=0.053  Sum_probs=57.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~   72 (199)
                      ...+|+++|++|||||||+|+|++... .....+..........+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            367999999999999999999998654 3333333333333334444431               135789999996432


Q ss_pred             cc-------cccccccCCCEEEEEEECCC
Q 029103           73 HS-------LAPMYYRGAAAAVVVYDITS   94 (199)
Q Consensus        73 ~~-------~~~~~~~~~d~~i~v~d~~~   94 (199)
                      ..       .....++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            21       22344688999999999863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.26  E-value=5.3e-12  Score=93.58  Aligned_cols=107  Identities=5%  Similarity=-0.108  Sum_probs=73.3

Q ss_pred             CCCcccccccccccccCCCEEEEEEECCCHHHHH---HHHHHHHHHHHhC-CCCceEEEEEeC-CCCcccccCCHHHHHH
Q 029103           66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE---RAKKWVQELQRQG-NPNLIMFLVANK-VDLEEKRKVKNEEGEL  140 (199)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~  140 (199)
                      .+|+.....+|+.|+.++|++|||+|.+|.+.++   ++.++...+.... ..+.|++|++|| .|++..  .+..+..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence            4678888999999999999999999999886543   2222222232221 368899999996 587643  23332222


Q ss_pred             HHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          141 YAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       141 ~~~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      ...    .+.+.++.+||.+|+|+.+.++||.+.+..+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            111    1456789999999999999999999888654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.08  E-value=1.6e-11  Score=95.65  Aligned_cols=143  Identities=15%  Similarity=0.125  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC----CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------AP   77 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~   77 (199)
                      ..+|+++|.+|+|||||+|+|.+..    .........+++.......+...   +.++||||.......        ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            3579999999999999999999751    11111222334444444444432   679999996433211        11


Q ss_pred             ccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103           78 MYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK  155 (199)
Q Consensus        78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      .++  ...+.++++++.........+..    +......+.|+++++||.|..+.... ......+.+..+..+.+.++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence            111  66789999998742100001100    11112357899999999998765443 444455666677766666665


Q ss_pred             CCCCH
Q 029103          156 SAHNV  160 (199)
Q Consensus       156 ~~~~v  160 (199)
                      +.+++
T Consensus       314 ~~~~~  318 (369)
T 3ec1_A          314 YAAEF  318 (369)
T ss_dssp             GTTTC
T ss_pred             hhhhc
Confidence            54443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=9.9e-12  Score=96.72  Aligned_cols=137  Identities=14%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCC-----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----cc---
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----AP---   77 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----~~---   77 (199)
                      ..+|+++|.+|+|||||+|+|.+....     .......+++.......+...   +.++||||......+    ..   
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            357999999999999999999985311     112333344444444544433   779999997433211    11   


Q ss_pred             -cc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103           78 -MY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus        78 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                       .+  ....+.++++++.........+..    +......+.|+++++||.|..+.... ......+.+..+..+++.++
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence             11  356778888888632100011100    11112357899999999998765433 44445556666665555543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=9.3e-10  Score=86.58  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC--ccceeEE--EEEEEeCCeEEEEEEEeCCCcccccc-----------
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFF--TQVLSLNEVTIKFDIWDTAGQERYHS-----------   74 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~v~l~d~~g~~~~~~-----------   74 (199)
                      .++++|+|++|+|||||++.|.+..+......  ..+....  ............+.++|++|......           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999998643321111  1111111  11122222334688999988532100           


Q ss_pred             ---cc----cc---------cccCC--CE-EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103           75 ---LA----PM---------YYRGA--AA-AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN  135 (199)
Q Consensus        75 ---~~----~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  135 (199)
                         .+    ..         ....+  |+ ++++.|...+-+..+ ..++   ... ..+.|+++|.||+|.....+...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieil---k~L-~~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTM---KKL-DSKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHH---HHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHH---HHH-hhCCCEEEEEcchhccchHHHHH
Confidence               00    00         11122  33 444555543322222 1222   222 36889999999999765433211


Q ss_pred             H--HHHHHHHHhCCcEEEecc
Q 029103          136 E--EGELYAQENGLSFLETSA  154 (199)
Q Consensus       136 ~--~~~~~~~~~~~~~~~~s~  154 (199)
                      .  .........|++++.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence            1  112112245677777774

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=80.51  Aligned_cols=137  Identities=17%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCC---------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---c--
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---L--   75 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---~--   75 (199)
                      +++++++|++|+|||||++.|++.......         .....................+.++|++|......   .  
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            579999999999999999999984322110         00000001111111112223678999998422100   0  


Q ss_pred             -----------------------ccccccCCCEEEEEEECC-CH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103           76 -----------------------APMYYRGAAAAVVVYDIT-SM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        76 -----------------------~~~~~~~~d~~i~v~d~~-~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                                             -...+..+++.++++|.. .+ ...+  ...+..+..   . .+++++++|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence                                   011234467888888854 22 1122  233344432   2 789999999998654


Q ss_pred             ccCCH--HHHHHHHHHhCCcEEEe
Q 029103          131 RKVKN--EEGELYAQENGLSFLET  152 (199)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~~~  152 (199)
                      .+...  .........+++.+|+.
T Consensus       156 ~e~~~~k~~i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          156 EEKSEFKQRVRKELEVNGIEFYPQ  179 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHHHHHcCccccCC
Confidence            32211  22233345567776643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.93  E-value=1.4e-09  Score=84.68  Aligned_cols=97  Identities=26%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHH
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQ  143 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~  143 (199)
                      ..++|...++.+.+..+++++|+|++++.     ..|...+.+.. .+.|+++|+||+|+.+.. ......    ..++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45778888888899999999999999863     34555555543 478999999999996533 222222    33355


Q ss_pred             HhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 029103          144 ENGL---SFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       144 ~~~~---~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ..+.   .++.+||++|.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999987754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.92  E-value=2.9e-10  Score=91.48  Aligned_cols=151  Identities=15%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHH------hCCCC----CCCcCc-----------cceeEEEEEEE-------------e
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFV------KGQFF----DFQEST-----------IGAAFFTQVLS-------------L   54 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~   54 (199)
                      ....|+++|.+||||||+++.|.      +.+..    +.+.+.           .+++.......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      32210    000000           01111110000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc-ccc---cc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 029103           55 NEVTIKFDIWDTAGQERYHS-LAP---MY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDL  127 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~  127 (199)
                      ....+.+.|+||||...... .+.   ..  +..+|.+++|+|+.......   .....+..    ..|+ ++|+||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            00345788999999753221 111   11  23789999999998653211   11222222    1454 889999997


Q ss_pred             cccccCCHHHHHHHHHHhCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 029103          128 EEKRKVKNEEGELYAQENGLSF------------------LETSAKSAHN-VNELFYEIAKR  170 (199)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~l~~~  170 (199)
                      ....  ..  ........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~--g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKG--GG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCC--TH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccch--HH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            6422  11  122233444443                  3468888888 98888888765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=4.1e-08  Score=77.18  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=83.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-Ccccee--EEEEEEEeCCeEEEEEEEeCCCcccccccccc-----ccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAA--FFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-----YYR   81 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~-----~~~   81 (199)
                      ...|+|+|++|||||||+|.|.+........ ...+..  ....... ......+.++|++|..........     -+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999999843221111 000110  0011111 111125789999986422111111     123


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc-------ccccCCHHHH----HHHH----HHhC
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE-------EKRKVKNEEG----ELYA----QENG  146 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~  146 (199)
                      ..+..++ ++.....  .+-..+...+..   .+.|+++|.||.|+.       ..+.......    ..+.    ...+
T Consensus       148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3355554 7765211  111122333333   367899999999863       1111122222    2222    1222


Q ss_pred             ---CcEEEecc--CCCCCHHHHHHHHHHHHHhh
Q 029103          147 ---LSFLETSA--KSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       147 ---~~~~~~s~--~~~~~v~~~~~~l~~~~~~~  174 (199)
                         ..++.+|+  ..+.|++++.+.|.+.+.+.
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence               35788999  55667999999998887553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.76  E-value=3.7e-09  Score=82.26  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHH
Q 029103           68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQ  143 (199)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~  143 (199)
                      .++.|...+..++..++++++|+|++++.+     .|...+.+. ..+.|+++|+||+|+.+... .....    ..+..
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRSV-KYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTTC-CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCcc-CHHHHHHHHHHHHH
Confidence            467788888888899999999999998763     344444443 24788999999999975322 22222    22345


Q ss_pred             HhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 029103          144 ENGL---SFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       144 ~~~~---~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      ..+.   .++.+||++|.|++++++.|.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   689999999999999999987765

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=9.7e-09  Score=77.04  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=69.3

Q ss_pred             EeCCCcc-cccccccccccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH
Q 029103           64 WDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL  140 (199)
Q Consensus        64 ~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  140 (199)
                      ...|||. .........+..+|+++.|+|+.++.+..  .+..|+        .+.|.++++||+|+.+...  ......
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~   73 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKE   73 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHH
Confidence            3568886 33445556788999999999999986653  233332        5788999999999976321  122233


Q ss_pred             HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          141 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       141 ~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +....+.+++.+|++++.|++++++.+.+.+..
T Consensus        74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            444567899999999999999999988887754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.65  E-value=2.6e-08  Score=74.68  Aligned_cols=59  Identities=19%  Similarity=0.315  Sum_probs=35.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER   71 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~   71 (199)
                      ..++|+++|.||||||||+|+|.+..... .....+++..........   .+.++||||...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            46899999999999999999999765322 222233333222222222   477999999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.58  E-value=1.9e-08  Score=74.65  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY   72 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~   72 (199)
                      ++|+++|.+|+|||||+|+|.+..... ..+..+++.........   ..+.+|||||....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence            599999999999999999999765432 22233333322222222   25789999997643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.47  E-value=1.8e-07  Score=74.06  Aligned_cols=136  Identities=16%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC------CC----CCCCcC-----------ccceeEEEEEEEe-------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG------QF----FDFQES-----------TIGAAFFTQVLSL-------------   54 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~-------------   54 (199)
                      ....|+++|++||||||++..|...      +.    .+.+.+           ..+.+........             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999988741      10    000000           0111111000000             


Q ss_pred             CCeEEEEEEEeCCCcccccc-----ccc-ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           55 NEVTIKFDIWDTAGQERYHS-----LAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ....+.+.++||+|......     +.. ......|.+++|+|++.......   ....+...   -.+..||+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCc
Confidence            00125688999999533221     100 11345789999999875432221   22333322   23457999999975


Q ss_pred             ccccCCHHHHHHHHHHhCCcEEEecc
Q 029103          129 EKRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                      ..    .-.+.......+.|+.+++.
T Consensus       253 ~~----gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          253 AK----GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             SS----HHHHHHHHHTTCCCEEEEEC
T ss_pred             cc----ccHHHHHHHHHCCCEEEEEc
Confidence            42    22344445567888877775

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.36  E-value=4.6e-07  Score=74.26  Aligned_cols=64  Identities=14%  Similarity=0.083  Sum_probs=39.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEE--EEe-CCeEEEEEEEeCCCccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQV--LSL-NEVTIKFDIWDTAGQER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~v~l~d~~g~~~   71 (199)
                      ...++|+|+|.||+|||||+|+|.+.... .....+.+.+...+.  ... ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            35688999999999999999999986531 111111111111111  111 12335688999999754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.27  E-value=1.5e-07  Score=74.39  Aligned_cols=87  Identities=15%  Similarity=0.086  Sum_probs=50.6

Q ss_pred             EEEEEEEeCCCccc--ccc-c---ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           58 TIKFDIWDTAGQER--YHS-L---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      .+.+.++||||...  ... .   ...  .....+.+++|+|.........   ....+...   -.+..||+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence            45677999999643  111 0   010  1224689999999875432222   22333322   234689999999653


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEecc
Q 029103          130 KRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                          ..-.+.......+.|+.+++.
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC
Confidence                223344555567899887775

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.27  E-value=2.9e-07  Score=68.27  Aligned_cols=93  Identities=16%  Similarity=0.074  Sum_probs=61.0

Q ss_pred             CCcccc-cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103           67 AGQERY-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN  145 (199)
Q Consensus        67 ~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  145 (199)
                      |||... .......+.++|+++.|+|+.+|.+.....  +.    . . +.|.++++||+|+.+...  ......+....
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----l-l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~   74 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD----F-S-RKETIILLNKVDIADEKT--TKKWVEFFKKQ   74 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----C-T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----h-c-CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence            776532 234456688999999999999886553210  01    1 1 788999999999976321  12223344456


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHH
Q 029103          146 GLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus       146 ~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      +.++ .+|++++.|++++++.|...
T Consensus        75 g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           75 GKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             CCeE-EEECCCCcCHHHHHHHHHHh
Confidence            7888 99999999999988776543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.23  E-value=2.5e-06  Score=67.62  Aligned_cols=84  Identities=17%  Similarity=0.062  Sum_probs=47.2

Q ss_pred             EEEEEEEeCCCcccccc-cc-----cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCcc
Q 029103           58 TIKFDIWDTAGQERYHS-LA-----PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-I-MFLVANKVDLEE  129 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~  129 (199)
                      .+.+.++||||...... +.     ...+..+|.+++|+|......   .......+.    ... | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            45688999999653211 10     011236899999999865431   112222221    233 4 789999999753


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEe
Q 029103          130 KRKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                      .    ...........+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    112333555667776555

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.10  E-value=2.7e-06  Score=70.32  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .|+|+|++|||||||++.+.|-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999999753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.10  E-value=1.4e-06  Score=65.88  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             ccccccccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhCCcEE
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFL  150 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  150 (199)
                      .+.+..+.++|.+++|+|+.+|.. ...+.+++....   ..++|.++|+||+|+.+....  ............+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            444556899999999999987753 333334433332   347788999999999764320  01223344445688999


Q ss_pred             EeccCCCCCHHHHHH
Q 029103          151 ETSAKSAHNVNELFY  165 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~  165 (199)
                      .+|+.++.|++++++
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998887665543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.07  E-value=6.8e-06  Score=61.98  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             EEEEEEEeCCCccc--ccc-ccc-----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 029103           58 TIKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLE  128 (199)
Q Consensus        58 ~~~v~l~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  128 (199)
                      .+.+.++||||...  ... +..     .....+|.+++|+|......   .......+..    ..+ ..+|+||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            35688999999765  211 111     12457899999999864321   1122222222    234 67899999964


Q ss_pred             ccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103          129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ..    .-.........+.++..++  .|+++++
T Consensus       253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 AK----GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             TT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             cc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            31    2234556667788887776  4555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.92  E-value=3.7e-07  Score=73.25  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccc--------cc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLA--------PM   78 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~--------~~   78 (199)
                      ....|+++|.+|+||||+.++|....... ...+.............+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999987642111 011110000000000011112335788888632  22222        45


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ  111 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  111 (199)
                      ++....+.++|+|.++. +.+....|+..+...
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            66667888999999886 344445666666554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.88  E-value=5.7e-05  Score=58.25  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             cccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhCCcEEEeccCC
Q 029103           79 YYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      ...++|.+++|... +|.. ...+.+++.....   .++|.++|+||+|+.+..... ...........|++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46889999988665 4543 2333344433332   366779999999997643210 1112233345688999999999


Q ss_pred             CCCHHHHHHH
Q 029103          157 AHNVNELFYE  166 (199)
Q Consensus       157 ~~~v~~~~~~  166 (199)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999887654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.83  E-value=2.4e-05  Score=62.07  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+-.-|.|+|++++|||+|+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45677899999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.78  E-value=1.5e-05  Score=55.46  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.70  E-value=2.2e-05  Score=54.66  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      --++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.66  E-value=2.7e-05  Score=55.08  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.60  E-value=0.00014  Score=54.97  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      -.++++|++|||||||+|.|.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357999999999999999998

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.60  E-value=1.8e-05  Score=59.88  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.++++|++|||||||+|.|.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            37899999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.58  E-value=4e-05  Score=54.18  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.57  E-value=3.9e-05  Score=53.70  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.56  E-value=9.2e-06  Score=56.97  Aligned_cols=21  Identities=33%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.56  E-value=7.6e-05  Score=51.47  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.|+|+|++||||||+++.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.54  E-value=4.9e-05  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|+|++|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.54  E-value=5.1e-05  Score=54.63  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.51  E-value=5.5e-05  Score=54.36  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|++|+|||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998743

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.50  E-value=6.2e-05  Score=53.19  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..--|+|+|++|||||||++.|.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3446889999999999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.50  E-value=0.00033  Score=49.39  Aligned_cols=85  Identities=9%  Similarity=0.013  Sum_probs=53.4

Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHH
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                      +.+.++|+|+..  .......+..+|.+++++..+.. + ..+..++..+....  .++.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            567899999865  23334556779999999987643 3 56666666665543  345677999999995432   122


Q ss_pred             HHHHHHHHhCCcEE
Q 029103          137 EGELYAQENGLSFL  150 (199)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (199)
                      +.......++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            33444444555443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.50  E-value=7e-05  Score=53.31  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .....|+|+|++|+|||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.46  E-value=7.3e-05  Score=53.25  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      --|+|+|++|||||||++.|.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.46  E-value=7.6e-05  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..|+|+|++|||||||++.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.44  E-value=5.9e-05  Score=52.05  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 029103           12 KLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~   31 (199)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.41  E-value=0.0001  Score=52.10  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.|+|+|++|||||||++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.41  E-value=7.4e-05  Score=54.35  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.41  E-value=9.8e-05  Score=50.33  Aligned_cols=23  Identities=39%  Similarity=0.664  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999999854

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.40  E-value=9.5e-05  Score=51.66  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++++|++|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.40  E-value=9.6e-05  Score=52.40  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..-|+|+|++|||||||++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.40  E-value=9.4e-05  Score=52.30  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ..|+|+|++|||||||++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.38  E-value=0.00011  Score=50.41  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.38  E-value=0.00013  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|.|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.36  E-value=0.00012  Score=51.98  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|+|+|+.|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998873

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.36  E-value=0.00011  Score=53.65  Aligned_cols=22  Identities=32%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.36  E-value=0.00011  Score=56.71  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++++|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.36  E-value=0.00062  Score=53.96  Aligned_cols=84  Identities=14%  Similarity=0.050  Sum_probs=45.1

Q ss_pred             EEEEEEEeCCCcccccc-ccc-----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 029103           58 TIKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK  130 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  130 (199)
                      .+.+.++||||...... +..     ..+...+.+++|+|.......   ......+..    ..+ ..+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            45688999999643321 111     123468899999998754222   112222222    122 3578999997432


Q ss_pred             ccCCHHHHHHHHHHhCCcEEEe
Q 029103          131 RKVKNEEGELYAQENGLSFLET  152 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~  152 (199)
                      .  .  .+.......+.++..+
T Consensus       256 ~--g--~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G--G--AALSIRHITGKPIKFL  273 (433)
T ss_dssp             C--T--HHHHHHHHHCCCEEEE
T ss_pred             H--H--HHHHHHHHHCCCeEEE
Confidence            1  1  2334455556664433

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.35  E-value=9.1e-05  Score=53.49  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.34  E-value=0.00013  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.34  E-value=0.00012  Score=50.19  Aligned_cols=20  Identities=20%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRF   30 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l   30 (199)
                      .-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.33  E-value=0.00014  Score=51.97  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.31  E-value=0.00015  Score=51.59  Aligned_cols=22  Identities=41%  Similarity=0.609  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.31  E-value=0.00014  Score=53.14  Aligned_cols=21  Identities=33%  Similarity=0.656  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.31  E-value=0.00012  Score=52.42  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.30  E-value=0.00012  Score=54.15  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.30  E-value=0.00012  Score=54.51  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|||||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.30  E-value=0.00015  Score=49.95  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.00015  Score=51.25  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..|+|+|++||||||+++.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.29  E-value=0.00023  Score=51.09  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|+|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.29  E-value=0.00012  Score=53.25  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.00018  Score=50.74  Aligned_cols=22  Identities=45%  Similarity=0.736  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3789999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.27  E-value=0.00013  Score=54.13  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4689999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.27  E-value=0.00013  Score=53.74  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.27  E-value=0.00017  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.26  E-value=0.00016  Score=52.90  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.26  E-value=0.00018  Score=50.86  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999986

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.26  E-value=0.00014  Score=53.73  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.26  E-value=0.00017  Score=53.36  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|||||||++.+.+-
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999873

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.25  E-value=0.00016  Score=52.98  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.25  E-value=0.00015  Score=52.51  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.25  E-value=0.00019  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.25  E-value=0.00017  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.370  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.25  E-value=0.00018  Score=50.83  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|+|+|++|+|||||++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998763

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.25  E-value=0.0002  Score=51.48  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|+|++||||||+++.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.25  E-value=0.00013  Score=52.10  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.25  E-value=0.00015  Score=52.94  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.24  E-value=0.00017  Score=54.65  Aligned_cols=26  Identities=12%  Similarity=0.161  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....-|+|+|++|||||||++.|.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44667899999999999999998873

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.24  E-value=0.00017  Score=49.96  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00016  Score=53.34  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.23  E-value=0.00021  Score=50.29  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.23  E-value=0.00016  Score=53.02  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.23  E-value=0.00026  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.22  E-value=0.00026  Score=49.95  Aligned_cols=25  Identities=24%  Similarity=0.573  Sum_probs=22.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.22  E-value=0.00019  Score=53.25  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.22  E-value=0.00023  Score=50.38  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.21  E-value=0.00019  Score=53.02  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5799999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.20  E-value=0.00024  Score=49.46  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00026  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.20  E-value=0.00018  Score=53.52  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.20  E-value=0.00035  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .....|+++|.+|+||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999999875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.20  E-value=0.00016  Score=54.50  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -.++++|++|+|||||+|.|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            357899999999999999998643

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.19  E-value=0.0003  Score=49.86  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|+|+|++|+|||||++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.18  E-value=0.00021  Score=53.34  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.18  E-value=0.00019  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.18  E-value=0.00013  Score=52.82  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-hC
Q 029103           12 KLVLLGDMGTGKTSLVLRFV-KG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~-~~   33 (199)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 64

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.18  E-value=0.00025  Score=49.08  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-++|+|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.17  E-value=0.00024  Score=50.69  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.17  E-value=0.0003  Score=51.33  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.16  E-value=0.0002  Score=53.06  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.16  E-value=0.00039  Score=52.86  Aligned_cols=26  Identities=12%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....+-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999865

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.16  E-value=0.00028  Score=49.08  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.16  E-value=0.00029  Score=48.94  Aligned_cols=22  Identities=41%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.16  E-value=0.00023  Score=51.11  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.16  E-value=0.00033  Score=48.79  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...|+|+|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.16  E-value=0.00049  Score=48.99  Aligned_cols=86  Identities=14%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             EEEEEEEeCCCc-ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103           58 TIKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE  136 (199)
Q Consensus        58 ~~~v~l~d~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  136 (199)
                      .+.+.++|+|+. ..  ......+..+|.+|+++..+ ..++..+...++.+....  +.++.+++|+.|.....  ...
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence            356789999876 32  23345667899999999754 566777777777776532  45578999999864301  123


Q ss_pred             HHHHHHHHhCCcEE
Q 029103          137 EGELYAQENGLSFL  150 (199)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (199)
                      +........+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            33344444565443

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00033  Score=48.89  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.15  E-value=0.00037  Score=52.17  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....-|+|.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999975

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.14  E-value=0.00034  Score=49.51  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.12  E-value=0.00032  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.00027  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.11  E-value=0.00035  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.00015  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|++|+|||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.11  E-value=0.00027  Score=48.67  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.10  E-value=0.00027  Score=54.74  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458899999999999999999874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.10  E-value=0.00034  Score=48.37  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|++.|++|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.09  E-value=0.00039  Score=50.74  Aligned_cols=23  Identities=13%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.09  E-value=0.00046  Score=51.79  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .....|+|+|++|||||||++.|.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998765

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.09  E-value=0.00052  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.08  E-value=0.00032  Score=52.21  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.08  E-value=0.00036  Score=50.23  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.08  E-value=0.00035  Score=51.28  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ......|+++|+|||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34467899999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.07  E-value=0.00045  Score=48.95  Aligned_cols=23  Identities=22%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.07  E-value=0.00021  Score=54.01  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999998863

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.06  E-value=0.0003  Score=54.29  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|+|++|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998743

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.06  E-value=0.00033  Score=54.14  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|+.|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            3689999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.04  E-value=0.00024  Score=47.85  Aligned_cols=22  Identities=27%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.04  E-value=0.00038  Score=51.16  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00035  Score=53.93  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|++|+|||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.04  E-value=0.00035  Score=53.87  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|+.|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.03  E-value=0.00043  Score=49.76  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.02  E-value=0.00037  Score=53.82  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.01  E-value=0.00051  Score=51.95  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|+|+|++|||||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998863

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.01  E-value=0.00055  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....|+|+|++|+|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.01  E-value=0.00035  Score=52.40  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.01  E-value=0.00039  Score=53.74  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3689999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.01  E-value=0.00042  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.00  E-value=0.0005  Score=48.42  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...|+|.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.00  E-value=0.00041  Score=53.96  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            3689999999999999999874

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.99  E-value=0.00045  Score=49.40  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+.|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.98  E-value=0.00037  Score=49.94  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.98  E-value=0.00042  Score=53.82  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999998743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.98  E-value=0.00043  Score=53.73  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|+.|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4689999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.98  E-value=0.00053  Score=47.81  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.97  E-value=0.00048  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.97  E-value=0.00059  Score=47.97  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|+|.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.96  E-value=0.00047  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.|+|+|++|||||||++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            44789999999999999999886

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.95  E-value=0.0007  Score=47.10  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.94  E-value=0.00056  Score=48.52  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.94  E-value=0.0011  Score=46.87  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +++.|++|+|||+|++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.93  E-value=0.00056  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.93  E-value=0.00059  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+++|++|+|||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999886

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.93  E-value=0.00063  Score=49.82  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.92  E-value=0.00035  Score=53.74  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4689999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.92  E-value=0.00045  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.++|+|++|+|||||++.|.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.92  E-value=0.00061  Score=46.64  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.92  E-value=0.00056  Score=53.16  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|++|+|||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.91  E-value=0.00068  Score=46.81  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.90  E-value=0.00061  Score=47.23  Aligned_cols=21  Identities=43%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.90  E-value=0.00077  Score=46.55  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+++|.+|+||||+++.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.90  E-value=0.00059  Score=50.28  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.90  E-value=0.00065  Score=45.26  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|++.|++|+|||++++.+..
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCcEEEECCCCccHHHHHHHHHH
Confidence            34699999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.90  E-value=0.00058  Score=51.53  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .--++++|+.||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999887

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.90  E-value=0.0004  Score=48.03  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=16.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.90  E-value=0.00079  Score=50.77  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |..+.+.....-|+|+|++|||||+|...|..
T Consensus         1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            1 MSDISKASLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence            44433334455688999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.90  E-value=0.00023  Score=50.57  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.90  E-value=0.00065  Score=49.83  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 029103           11 VKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.90  E-value=0.00042  Score=52.96  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|+|||||++.|.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.88  E-value=0.00059  Score=52.21  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.88  E-value=0.00074  Score=48.83  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+|+|++||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.88  E-value=0.00062  Score=50.57  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.87  E-value=0.00078  Score=45.98  Aligned_cols=21  Identities=48%  Similarity=0.672  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.86  E-value=0.0006  Score=53.77  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -|+|+|+.|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.86  E-value=0.00064  Score=49.10  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....-|+|.|+.|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.84  E-value=0.00091  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.83  E-value=0.00061  Score=53.23  Aligned_cols=21  Identities=38%  Similarity=0.800  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++|+|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            478999999999999999987

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.82  E-value=0.00074  Score=48.39  Aligned_cols=22  Identities=41%  Similarity=0.652  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998854

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.82  E-value=0.00035  Score=53.87  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998743

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.79  E-value=0.001  Score=50.71  Aligned_cols=140  Identities=13%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC--------c-------------CccceeEEEEEEEe-------------
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------E-------------STIGAAFFTQVLSL-------------   54 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~--------~-------------~~~~~~~~~~~~~~-------------   54 (199)
                      ..--|+++|++|+||||+++.|.+.......        .             ...+..+.......             
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            3567899999999999999998872110000        0             00010010000000             


Q ss_pred             CCeEEEEEEEeCCCccccccc-ccc-----cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           55 NEVTIKFDIWDTAGQERYHSL-APM-----YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      ......+.++|++|....... ...     ..-..|-.++++|.....   ........+.....   ..++++||.|..
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~  281 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDAD  281 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGC
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCc
Confidence            001123557899996432211 110     122468889999976442   22233333332211   237889999953


Q ss_pred             ccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103          129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..    .-.........+.|+..++  +|+++
T Consensus       282 a~----~G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          282 AR----GGAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             SC----CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             cc----hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence            21    2224455667788888777  55554

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.79  E-value=0.00094  Score=48.41  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|.|++|+||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.79  E-value=0.00057  Score=51.96  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|+|+.|||||||++.|.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46889999999999999999753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.78  E-value=0.00083  Score=46.44  Aligned_cols=21  Identities=19%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.77  E-value=0.00069  Score=54.84  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .|+|+|++|||||||++.|++-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.76  E-value=0.0012  Score=49.27  Aligned_cols=24  Identities=33%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00093  Score=49.00  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.|+|+|++|+||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.74  E-value=0.0013  Score=46.27  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3478899999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.74  E-value=0.00083  Score=50.34  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|+|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988743

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.00081  Score=53.72  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.|.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.73  E-value=0.0011  Score=48.53  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...|++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            446999999999999999999763

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.71  E-value=0.00083  Score=46.23  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.71  E-value=0.00098  Score=51.47  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.|+++|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            44689999999999999999887

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.69  E-value=0.0016  Score=47.08  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567999999999999999998753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.68  E-value=0.0014  Score=46.60  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|+++|++|+||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.67  E-value=0.0012  Score=47.40  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.66  E-value=0.0011  Score=53.28  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .--|+|+|+.|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999887

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.66  E-value=0.0011  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.|+++|++|+|||||++.|.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.65  E-value=0.0013  Score=46.20  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.65  E-value=0.0012  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|+|++|+|||||+..+.+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.65  E-value=0.0014  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.65  E-value=0.0012  Score=50.86  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      +++|+|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.65  E-value=0.0012  Score=46.92  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++++|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.61  E-value=0.0018  Score=48.57  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..+..+++.|+||+|||+|++.+...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567888899999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.58  E-value=0.0013  Score=52.74  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999999988

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.58  E-value=0.0015  Score=43.86  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+|+|+.|+|||||++++.-
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999763

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.56  E-value=0.0065  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHH
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      ++-.-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            456677799999999999999654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.55  E-value=0.0017  Score=49.63  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999999875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.54  E-value=0.0018  Score=46.77  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...++.+|+|+|||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3468999999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.53  E-value=0.0015  Score=53.24  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++++|+.|+|||||++.|.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999743

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.53  E-value=0.0018  Score=43.20  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ...|++.|++|+|||++++.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999987643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.49  E-value=0.0014  Score=46.37  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.48  E-value=0.0018  Score=48.38  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|++.|+||+|||+|++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            467999999999999999999863

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.48  E-value=0.0017  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.47  E-value=0.0022  Score=48.18  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .....+++.|+||+|||+|++.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999987664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0019  Score=47.92  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.|+||+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.45  E-value=0.0015  Score=53.81  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0017  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999999743

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.44  E-value=0.0019  Score=46.18  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.43  E-value=0.0023  Score=46.31  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....|+|+|++|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.43  E-value=0.0015  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++++|+.|+|||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.43  E-value=0.0023  Score=46.76  Aligned_cols=23  Identities=35%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...|++.|+||+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.42  E-value=0.0023  Score=45.06  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.41  E-value=0.0018  Score=53.37  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.40  E-value=0.003  Score=47.39  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.40  E-value=0.0019  Score=45.47  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...|+|+|++|+|||+|...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.39  E-value=0.0019  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999886

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.39  E-value=0.0032  Score=46.46  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44678999999999999999998764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.39  E-value=0.0023  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            446899999999999999999864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.36  E-value=0.0021  Score=49.78  Aligned_cols=19  Identities=37%  Similarity=0.461  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 029103           13 LVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~   31 (199)
                      .+|+|+.|+|||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4689999999999999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.32  E-value=0.0021  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998743

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.32  E-value=0.0034  Score=48.29  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...+|+++|++|+||||+.+.|.+
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346899999999999999998776

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.31  E-value=0.0024  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998763

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.30  E-value=0.0034  Score=49.51  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..-|+|+|++||||||+.+.|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.27  E-value=0.0027  Score=48.19  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.26  E-value=0.0022  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.26  E-value=0.0027  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.25  E-value=0.0017  Score=53.58  Aligned_cols=22  Identities=36%  Similarity=0.609  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998863

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.24  E-value=0.0025  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++|+|+.|+|||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999743

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.21  E-value=0.0028  Score=47.67  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             EEEEEEEeCCCcccccc-cc---ccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHS-LA---PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .+.+.++||+|...... ..   ...+.  ..+.+++|+|.+..  ...+..+...+..   -+ ..-+++||.|.... 
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-  254 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-  254 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC-
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc-
Confidence            34688999999654321 11   11222  35678889987632  2333333222211   11 23567799997532 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEec
Q 029103          132 KVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                         .-.+.......+.++..++
T Consensus       255 ---~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 ---LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---CHHHHHHHHTCSCCCSEEC
T ss_pred             ---hhHHHHHHHHHCcCEEEEE
Confidence               2244555667777765544

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.21  E-value=0.00043  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            3678999999999999998743

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.21  E-value=0.0023  Score=48.97  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +++.|++|+|||||++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998873

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.19  E-value=0.0028  Score=48.82  Aligned_cols=24  Identities=29%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0029  Score=52.27  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ++|+|+.|+|||||++.|.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.17  E-value=0.0033  Score=47.08  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...+++.|+||+|||+|++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.17  E-value=0.0015  Score=53.72  Aligned_cols=22  Identities=23%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999988763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.16  E-value=0.0034  Score=47.41  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCcccccc-c-------cc----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           59 IKFDIWDTAGQERYHS-L-------AP----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~-~-------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      +.+.++|+||...... +       ..    ......+.+++|+|.+..  .+.+.. ...+...  .+ ...+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCC
Confidence            3578999999532211 0       00    111347888999998633  222221 1222222  11 2367789999


Q ss_pred             CcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103          127 LEEKRKVKNEEGELYAQENGLSFLETSA  154 (199)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                      ....    .-.+.......+.|+.++..
T Consensus       261 ~~~~----gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAK----GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred             Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence            6432    12256666777888777654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0038  Score=49.40  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3568999999999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0039  Score=49.27  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.12  E-value=0.0033  Score=48.02  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.12  E-value=0.0032  Score=48.47  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -+.|+|++|+|||||+..+.+..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.12  E-value=0.0038  Score=48.28  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|.|++|+|||||++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.11  E-value=0.0035  Score=45.28  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.11  E-value=0.0048  Score=46.81  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|++.|+||+|||+|++.+...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3567999999999999999999753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.10  E-value=0.0039  Score=47.41  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|++.|+||+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            457999999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.10  E-value=0.0021  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.06  E-value=0.004  Score=43.20  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+|.+|||||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998743

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.0044  Score=49.07  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.06  E-value=0.0041  Score=47.00  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -|+|+||+|||||||...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.06  E-value=0.0041  Score=42.78  Aligned_cols=24  Identities=21%  Similarity=0.529  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..-|++.|++|+|||||.-.|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456899999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.03  E-value=0.0027  Score=51.88  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..-.|+|+|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467999999999999999998864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.02  E-value=0.0046  Score=46.70  Aligned_cols=24  Identities=42%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.02  E-value=0.0041  Score=47.48  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-|+|+|++|+|||||...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999885

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.00  E-value=0.0046  Score=43.74  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+|+|+.|+|||||++++.-
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            47889999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.99  E-value=0.0043  Score=47.37  Aligned_cols=21  Identities=43%  Similarity=0.687  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +++.|++|+|||++++.+.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.98  E-value=0.0027  Score=46.68  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....|+|.|.+||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.97  E-value=0.0019  Score=47.49  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.96  E-value=0.0042  Score=50.71  Aligned_cols=23  Identities=43%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.++++|+||+|||||++.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998763

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.92  E-value=0.0045  Score=49.90  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.91  E-value=0.0046  Score=49.52  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-+++++|+||+|||+|++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.0049  Score=48.20  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +.-.|++.||||+|||+|++++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999863

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.90  E-value=0.0042  Score=47.92  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.++|.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.90  E-value=0.005  Score=47.36  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -.+++.|+||+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.89  E-value=0.0061  Score=44.14  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999998753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.88  E-value=0.0049  Score=43.84  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.|+|.|++|+||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.86  E-value=0.0053  Score=49.24  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +-.|+++|+||+|||+|++.+.+.
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999863

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.85  E-value=0.0026  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=17.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+-|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.84  E-value=0.0062  Score=52.89  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQF   35 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~   35 (199)
                      .++|+|+.|+|||||++.|.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999997644

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.84  E-value=0.0055  Score=46.64  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ...|++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346899999999999999999754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.82  E-value=0.0068  Score=46.74  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|++.|+||+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.81  E-value=0.0063  Score=46.90  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ....|++.|++|+|||+|++.+...
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-49
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-49
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-48
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-46
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-46
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-45
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-44
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-43
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-43
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-42
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-40
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-40
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-38
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-38
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-36
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-36
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	9e-35
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	9e-35
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	9e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-32
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-32
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-32
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-31
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-30
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-28
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-28
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-27
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-27
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-25
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-24
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-24
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-21
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	9e-17
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-13
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-10
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	9e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-06
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	7e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	8e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	6e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	5e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.002

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (396), Expect = 1e-49
 Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++L+GD G GK+ L++RFV+ +F     +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT   +F   K+W + +    N    + LV NK D+ E R
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 122

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  ++GE  A+E G+ F+E+SAK+  NVNE+F+ +AK + E
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  156 bits (396), Expect = 1e-49
 Identities = 63/160 (39%), Positives = 99/160 (61%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+GD G GKT ++ RF +  F     STIG  F  + + L+   IK  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGA   ++VYDIT+  SF+  + W++ ++   + ++   ++ NK D+ +KR
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  E GE  A + G+ F+ETSAK+  NV   F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (389), Expect = 1e-48
 Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K++L+GD G GKT L++RF  G F      + +G  F  +VL ++ V +K  +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
           R+ S+   YYR A A +++YD+T+  SF+  + W+ E+      ++ + L+ NKVD   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R VK E+GE  A+E GL F+ETSAK+  NV+  F  IAK L
Sbjct: 128 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 4e-46
 Identities = 69/160 (43%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GDMG GK+ L+ +F + +F      TIG  F T+++ ++   IK  IWDTAGQER
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRGAA A++VYDIT   ++     W+ + +   NPN ++ L+ NK DLE +R
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            V  EE + +A+ENGL FLE SAK+  NV + F E AK++
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 5e-46
 Identities = 68/160 (42%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+G+ G GKT LV RF +G F   Q +TIG  F  + + +N   +K  IWDTAGQER
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYR A A ++ YDIT  +SF    +W++E+++  +  +I  LV NK+DL E+R
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  +  E +++   + +LETSAK + NV +LF ++A RL
Sbjct: 127 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  147 bits (372), Expect = 1e-45
 Identities = 65/168 (38%), Positives = 102/168 (60%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+L+G+ G GK+ L+LRF    + +   STIG  F  + + L+  T+K  IWDTAGQER
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + ++   YYRG+   ++VYD+T  +SF   K W+QE+ R     ++  LV NK DL++KR
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
            V+ +  + +A  N + FLETSA  + NV + F  +A+++ E    + 
Sbjct: 128 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 5e-44
 Identities = 59/166 (35%), Positives = 97/166 (58%), Gaps = 1/166 (0%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+ G GK+SL+LRF    F     +TIG  F  + +S++    K  IWDTAGQER
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + +L P YYRGA   ++VYD+T  D+F +   W+ EL+     N I+ ++      +E R
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
           +V   EG  +A+++ + F+E SAK+   V   F E+ +++ +  P 
Sbjct: 129 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ-TPG 173

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 3e-43
 Identities = 75/160 (46%), Positives = 111/160 (69%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV LG+   GKTSL+ RF+   F +  ++TIG  F ++ + L + TI+  +WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + SL P Y R +AAAVVVYDIT+++SF++  KW+ +++ +   ++I+ LV NK DL +KR
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V  EEGE  A+E  + F+ETSAK+ +NV +LF  +A  L
Sbjct: 122 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 3e-43
 Identities = 70/168 (41%), Positives = 105/168 (62%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VL+GD G GK++L+ RF + +F    +STIG  F T+ + ++  TIK  IWDTAGQER
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y  +   YYRGA  A++VYDI    ++E  ++W++EL+   + N+++ LV NK DL   R
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
            V  +E   +A++N LSF+ETSA  + NV E F  I   +  +   +Q
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (352), Expect = 4e-43
 Identities = 59/162 (36%), Positives = 89/162 (54%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G+   GKTS + R+    F     ST+G  F  + +  N+  IK  IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           Y ++   YYRGA   +++YDIT+ +SF   + W  +++     N  + LV NK D+E++R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V +E G   A   G  F E SAK   NV + F  +   + E
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 3e-42
 Identities = 70/160 (43%), Positives = 107/160 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++GD G GK+ L+L+F   +F    + TIG  F  ++++++   IK  IWDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDIT  ++F     W+++ ++  + N+++ L+ NK DLE +R
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            VK EEGE +A+E+GL F+ETSAK+A NV E F   AK +
Sbjct: 125 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 7e-42
 Identities = 109/166 (65%), Positives = 133/166 (80%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
           NK  Q KLVLLG+   GK+SLVLRFVKGQF +FQESTIGAAF TQ + L++ T+KF+IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125
           TAGQERYHSLAPMYYRGA AA+VVYDIT+ +SF RAK WV+ELQRQ +PN+++ L  NK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           DL  KR V  +E + YA +N L F+ETSAK++ NVNE+F  IAK+L
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 4e-40
 Identities = 64/160 (40%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K +++G+ GTGK+ L+ +F++ +F D    TIG  F ++++++    +K  IWDTAGQER
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           + S+   YYRGAA A++VYDITS +++     W+ + +   + N+++ L  NK DL+  R
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +V   E   +AQEN L FLETSA +  NV E F + A+++
Sbjct: 127 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 6e-40
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 11/174 (6%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL----------SLNEVTIK 60
           +KL+ LGD G GKT+ + R+   +F     +T+G  F  + +          S     + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MF 119
             +WDTAGQER+ SL   ++R A   ++++D+TS  SF   + W+ +LQ         + 
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 120 LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           L+ NK DL ++R+V   +    A + G+ + ETSA +  NV +    +   + +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 5e-38
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K+V+LG  G GK++L ++FV G F +  + TI   F+ + + ++      +I DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ S+  +Y +     ++VY + +  SF+  K    ++ R      + + LV NKVDLE
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            +R+V + EG   A+E G  F+ETSAKS   V+ELF EI +++
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 6e-38
 Identities = 73/162 (45%), Positives = 108/162 (66%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+VLLG+   GKTSLVLR+ + +F D   +T+GA+F T+ L++    +   IWDTAGQER
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131
           +H+L P+YYR +  A++VYDIT  DSF++ K WV+EL++     + + +V NK+DLE++R
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            V  +E E YA+  G     TSAK    + ELF ++ KR+ E
Sbjct: 125 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (313), Expect = 4e-37
 Identities = 90/164 (54%), Positives = 121/164 (73%), Gaps = 3/164 (1%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +KLVLLG+   GK+S+VLRFV   F + +E TIGAAF TQ +++NE T+KF+IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL--- 127
           R+ SLAPMYYR A AA+VVYD+T   SF +A+ WV+EL  Q + ++I+ LV NK+D+   
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
             +RKV  EEGE  A+E GL F ETSAK+  NVN++F  I +++
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-36
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 14/182 (7%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K V++GD   GKT L++ +   +F      T+   +   V+   E      ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQE 62

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
            Y  L P+ Y      +V + + S  SFE  K+          P     LV  ++DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 131 RKVKN------------EEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
                            E  E  A++   + ++E SA +   +  +F E      E    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 178 RQ 179
           ++
Sbjct: 183 KK 184

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (305), Expect = 6e-36
 Identities = 76/162 (46%), Positives = 111/162 (68%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++K+ LLGD G GK+S++ RFV+  F      TIGA+F T+ +       KF IWDTAG 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           ER+ +LAPMYYRG+AAA++VYDIT  ++F   K WV+EL++ G P++++ +  NK DL +
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            R+V   + + YA      F+ETSAK+A N+NELF EI++R+
Sbjct: 124 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 4e-35
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            +K V++GD   GKT L++ +    F      T+    ++  + ++   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQ 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
           E Y  L P+ Y     +++ + + S  SFE  +       R   PN  + LV  K+DL +
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 130 KRKVKNE------------EGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            +    +            +G   A+E G + +LE SA +   +  +F E  + +    P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 7e-35
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 6/172 (3%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           + K+   K++LLGD G GK+SL+ R+V  +F      TIG  F  + L ++   +   IW
Sbjct: 1   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFL 120
           DTAGQER+ SL   +YRG+   ++ + +    SF+    W +E     +     +    +
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 121 VANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRL 171
           + NK+D+ E R+V  EE + + ++NG   + ETSAK A NV   F E  +R+
Sbjct: 121 LGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  118 bits (297), Expect = 9e-35
 Identities = 52/161 (32%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  E T   ++  +V+  +   ++ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
           Y ++   Y+R     + V+ IT M+SF     + +++ R   + N+   LV NK DLE+K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  EE +  A +  ++++ETSAK+  NV+++F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 9e-35
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 1   MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60
           MA      + +K V++GD   GKT L++ +    F +    T+    +   +++      
Sbjct: 1   MAHGPGA-LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYL 58

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL 120
             ++DTAGQE Y  L P+ Y      ++ + + +  SF+  K+      ++  PN+   L
Sbjct: 59  LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 118

Query: 121 VANKVDLEEKRK------------VKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167
           +  ++DL +  K            +  E+G+  A+E G   ++E SA +   +  +F E 
Sbjct: 119 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178

Query: 168 AKR 170
              
Sbjct: 179 IIA 181

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 14/174 (8%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           I+ KLV++GD   GKT L++   K QF +    T+    +   + ++   ++  +WDTAG
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
            E Y  L P+ Y      ++ + I S DS E   +      +   PN+ + LV NK DL 
Sbjct: 60  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119

Query: 129 EKRKVKN------------EEGELYAQENG-LSFLETSAKSAHNVNELFYEIAK 169
                +             EEG   A   G   ++E SAK+   V E+F    +
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (287), Expect = 2e-33
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D  E+TIG  F  + + ++   IK  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 72  YHSL-APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEE 129
           +       YYR   A V VYD+T+M SF     W++E ++     ++   LV NK DL  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAH---NVNELFYEIA 168
             +V  +  + +A  + +   ETSAK+ +   +V  +F  +A
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 9e-33
 Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 3/165 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV++G  G GK++L ++ ++  F D  + TI  ++  QV+   E T   DI DTAGQ
Sbjct: 3   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E Y ++   Y R     + V+ I +  SFE   ++ ++++R   + ++ M LV NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            +     +  +  A+  G+ ++ETSAK+   V + FY + + + +
Sbjct: 122 ARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 49/163 (30%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + +LV++G  G GK++L ++F++  F    + TI    +T+   +++   + DI DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLE 128
           E + ++   Y R     ++V+ +T   SFE   K+ ++ L+ +      M L+ NK DL+
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            +R+V  EEG+  A++  ++++E SAK   NV++ F+E+ + +
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 15/175 (8%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           ++ K+V++GD   GKT+L+  F K  F +    T+    +T    ++   I+  +WDT+G
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
              Y ++ P+ Y  + A ++ +DI+  ++ +   K  +   ++  PN  M LV  K DL 
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119

Query: 129 E------------KRKVKNEEGELYAQENG-LSFLETSAKSAHN-VNELFYEIAK 169
                        +  V  ++G   A++ G  +++E SA  + N V ++F+    
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (280), Expect = 4e-32
 Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 4/164 (2%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K+++LGD G GKTSL+ ++V  +F +  ++TIGA F T+ + +++  +   IWDTAGQER
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP----NLIMFLVANKVDL 127
           + SL   +YRGA   V+V+D+T+ ++F+    W  E   Q +P    N    ++ NK+DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           E ++            +N + + ETSAK A NV + F  IA+  
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 4e-32
 Identities = 56/164 (34%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + KLV+LG  G GK++L ++FV+G F +  + TI  ++  QV    +     +I DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTAGT 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E++ ++  +Y +      +VY IT+  +F   +   +++ R     ++ M LV NK DLE
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 129 EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKRL 171
           ++R V  E+G+  A++    +FLE+SAKS  NVNE+FY++ +++
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 5e-32
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             KLV++G  G GK++L ++F++  F            +T++ S++ +  + DI DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           E + ++   Y R     ++V+ I    SF    K   ++ R     +  + LV NK DLE
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            +R+V   E   +   + +++ E SAK   NV+E F ++ + +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 1e-31
 Identities = 57/165 (34%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           + +K+V++G+   GK+S++ R+ KG F    + TIG  F  + + +N+  ++  +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE + ++   YYRGA A V+V+  T  +SF  A    +E       ++   LV NK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESF-EAISSWREKVVAEVGDIPTALVQNKIDLL 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           +   +KNEE E  A+   L F  TS K   NV+E+F  +A++  +
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  108 bits (269), Expect = 1e-30
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +++++G    GKT+++ +   G+       T        V ++    I F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA----NKVDL 127
              L   Y++     + V D    +    A++ +  +  +      + LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
               ++ ++ G    +        T A S   + E    ++ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 4e-30
 Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F    + TI  ++       N+     D+ DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQ-WAILDVLDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEK 130
           + ++   Y R     ++VY +T   SFE   ++ Q + R +   +  M LVANKVDL   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEIAKRL 171
           RKV  ++G+  A +  + ++ETSAK    NV++ F+++ + +
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-28
 Identities = 55/169 (32%), Positives = 97/169 (57%), Gaps = 4/169 (2%)

Query: 9   IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           +Q KLVL+GD GTGKT+ V R + G+F     +T+G      V   N   IKF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           QE++  L   YY  A  A++++D+TS  +++    W ++   +   N+ + L  NKVD++
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLCGNKVDIK 120

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177
           +++        ++ ++  L + + SAKS +N  + F  +A++L   +P+
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG-DPN 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG-AAFFTQVLSLNEVTIKFDIWDTAGQE 70
           K+++LGD G GKTSL+ R+V  ++    ++TIG      +V    +      +WDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFE----RAKKWVQELQRQGNPNLIMFLVANKVD 126
           R+ SL   +YRGA   V+VYD+T+  SFE       +++              ++ NK+D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LEEKRKVKNE-EGELYAQENG-LSFLETSAKSAHNVNELFYEIAKRLAEVN 175
            EE +K+ +E   +  A+  G +    TSAK+A NV+  F EIA+   + N
Sbjct: 124 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 174

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ + G  G GK+SLVLRFVKG F +    T+   +   +     +     I DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSHQ 62

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEE 129
           + ++  +      A ++VY ITS  S E  K   +++        ++ + LV NK D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
            R+V++ E E  A+    +F+ETSAK  HNV ELF E+  
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 4e-28
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 4/164 (2%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +VKL + G  G GK++LV+RF+  +F    + T+ + +  Q  ++++  +  +I DTAGQ
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANKVDLE 128
           E        + R     V+VYDIT   SFE          + +   N+ + LV NK DL+
Sbjct: 61  EDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 119

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYEIAKRL 171
             R+V  EEGE  A E   +F E SA +   N+ E+FYE+ + +
Sbjct: 120 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 99.3 bits (246), Expect = 5e-27
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 9/172 (5%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD 65
             N ++++++LG  G GKT+++ R   G+    +  TIG    T    L+   +K ++WD
Sbjct: 13  GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWD 67

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANK 124
             GQ         YY   AA + V D T  D    A K +  + ++    +  + + ANK
Sbjct: 68  LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127

Query: 125 VDLE---EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            D        +V  E   +  ++   S + +SA     + E    +   + E
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 6e-27
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG    GKT+++ +   GQ       T+G    T         +KF++WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP-TVGFNVETV----TYKNVKFNVWDVGGQ 66

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           ++   L   YY G    + V D    D  + A++ +  +       + I+ + ANK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 129 EKRK---VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +  K   ++ + G    ++       + A S   + E    +    
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 7e-27
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           ++   K+ +LG    GK+SL ++FV+GQF D  + TI   F   + ++N       + DT
Sbjct: 1   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDT 59

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV-QELQRQGNPNLIMFLVANKV 125
           AGQ+ Y      Y       ++VY +TS+ SFE  K    + L   G   + + LV NK 
Sbjct: 60  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 119

Query: 126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           DL  +R +  EEG+  A+    +FLE+SAK      ++F  I  
Sbjct: 120 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 7e-27
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           + K++++G    GKT+++ +F   +              + V  +     +F +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQ 69

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDLE 128
           E   S    YY      +VV D T  +     ++ + ++    +      L  ANK D++
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 129 EK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           E     ++         +++        A +   + +    +  RL
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (237), Expect = 7e-26
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 3/161 (1%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           K++LLG  G GK++L   F      D  E+      + + + ++       ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDLEEK 130
              L         A V+VY +T   SFE+A +   +L+R    + +  + V NK DL   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           R+V  +EG   A      F+ETSA   HNV  LF  + +++
Sbjct: 121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 2e-25
 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L +LGD  +GK+SL+ RF+ G +   +     +  + + + ++  T    I + AG 
Sbjct: 5   ELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGA 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129
                    +         + D  S  +  R    +  L+ +G   L + LV  +  +  
Sbjct: 63  PDAKF--SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 130 KRKVKNEEG---ELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179
                  +     L A     S+ ET A    NV+ +F E+A+++  +   +Q
Sbjct: 121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 91.3 bits (225), Expect = 5e-24
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L++LG    GKT+++ +F           TI       + +L     K +IWD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
           +   S    Y+      + V D       +  ++ +Q L  +       + + ANK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 129 EKRKV---KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
                   +        + +       SA +  ++      +   ++ 
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 91.2 bits (225), Expect = 6e-24
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 9/171 (5%)

Query: 5   SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIW 64
           S  + +V+++LLG    GKT+L+ +            T G    +          K ++W
Sbjct: 11  SAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSV----QSQGFKLNVW 65

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVAN 123
           D  GQ +       Y+      + V D      FE   + + EL  +     + + + AN
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 124 KVDLEEKR---KVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           K DL       ++         ++        SA +   V +    + K +
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 6e-23
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
           N   ++VL+G+ G GK++L   F       D     +G   + + L ++  +    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 67  A-GQERYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 124
              +     L     +   A ++VY IT   SF + ++  +Q  + +   ++ + LV NK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
            DL   R+V   EG   A      F+ETSA   HNV ELF  I +++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 8e-23
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++++++LG  G GKT+++ R   G+       T        V ++    +KF +WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLE 128
                    YY    A + V D    D    +K  +  +  +      I+ + ANK D+E
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 129 EKRKVK---NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
           +        N  G    ++      +TSA     ++E    + + L  
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 85.5 bits (210), Expect = 6e-22
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +++L L+G   +GKT+ V     GQF +    T+G         + +  +   +WD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQ 57

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLE 128
            R+ S+   Y RG +A V + D    +  E +K  +  L  +     + + ++ NK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 129 E---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
               ++++  +      Q+  +     S K   N++     + +  
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (209), Expect = 3e-21
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 43/203 (21%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           ++KL+LLG   +GK++ + +            T G   +      +  ++ F + D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQ 55

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDS-----------FERAKKWVQELQRQGNPNLIM 118
                     +    + + +  ++  D             E    +   +      N  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENG--------------------------LSFLET 152
            L  NK DL E++ + +   + + + +G                          +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 153 SAKSAHNVNELFYEIAKRLAEVN 175
            A    N+  +F  +   + ++N
Sbjct: 176 CATDTENIRFVFAAVKDTILQLN 198

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.2 bits (204), Expect = 5e-21
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 16/169 (9%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           KL+ LG    GKT+L+      +      +T+   +      L    IKF  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEK 130
              L   Y+      V + D    + F+ A+  +  L       ++   ++ NK+D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 131 RKVKN----------EEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
                             +    +  +     S    +   E F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 20/175 (11%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
            VK++LLG   +GK++ + +    +    Q+ T G   +          + F + D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-----------LQRQGNPNLIM 118
                     +    + + +   +  D      +               +  +   N+ +
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            L  NK DL E++       + + +  G        +    + E F    +   +
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ--KFLVECFRGKRRDQQQ 167

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 21/178 (11%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
             KLV LG    GKT+L+      +      +            L    + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGH 67

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLE 128
            +   +   Y       V + D    +    +K+ +   +  +   N+ + ++ NK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 129 EKRKV---------------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           E                   K            L     S        E F  +A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.7 bits (177), Expect = 8e-17
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 23/172 (13%)

Query: 10  QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69
           +VKL+LLG   +GK+++V +           +  G              + F ++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG----IVETHFTFKDLHFKMFDVGGQ 52

Query: 70  ERYHSLAPMYYRGAAAAVVVYDITSMDSF-----------ERAKKWVQELQRQGNPNLIM 118
                     + G  A +    ++  D             E  K +      +   +  +
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170
            L  NK DL E++  K+     Y +  G +  E +A     +   F ++ KR
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA---YIQCQFEDLNKR 161

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (179), Expect = 9e-17
 Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 24/188 (12%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           +L+LLG   +GK+++V +            T G              + F ++D  GQ  
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK----FQVDKVNFHMFDVGGQRD 59

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWV-----------QELQRQGNPNLIMFL 120
                   +    A + V   +S +   R                     +    + + L
Sbjct: 60  ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL 119

Query: 121 VANKVDL-EEKRKVKNEEGELYAQENGLSFLETSAKSAHN----VNELFYEIAKRLAEVN 175
             NK DL  EK      + E Y  E         A         V    Y I      ++
Sbjct: 120 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS 179

Query: 176 PSRQTGMK 183
            +   G  
Sbjct: 180 TASGDGRH 187

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 1e-13
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 5/127 (3%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
            ++ +G   +GKT L +R + GQ+ D  +++I  +     ++ N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 72  YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL----IMFLVANKVDL 127
              L   +   A A V V D  +     +            +  L     + +  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 128 EEKRKVK 134
              +  K
Sbjct: 121 AMAKSAK 127

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (130), Expect = 3e-10
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 1/161 (0%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+V+ G    GK+SL+     G+         G         ++   +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130
                        A   +      +   +       +        +        + +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +     E    ++ NG + +  SA++   V+ L   + + +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 9e-09
 Identities = 17/172 (9%), Positives = 44/172 (25%), Gaps = 19/172 (11%)

Query: 13  LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER- 71
           +++ G   +GKTSL+              T+ +         +   +    +    + R 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 72  --YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ----GNPNLIMFLVANKV 125
                L            +V             +++ ++           + + +  NK 
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 126 DLEEKRKVKNEEGELYAQEN--------GLSFLETSAKSAHNVNELFYEIAK 169
           +L   R     +  L ++           L+ +E               +  
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 9/169 (5%)

Query: 15  LLGDMGTGKTSLVLRFVK------GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68
           L+G    GK+SL+    +         F      +G    ++        I   I   + 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 69  QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFL-VANKVDL 127
            +        +       + V D              +             L   NKVDL
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 125

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176
            E+  VK     L     GL+ L  SA +   +  L   +   +    P
Sbjct: 126 LEEEAVKALADAL--AREGLAVLPVSALTGAGLPALKEALHALVRSTPP 172

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 11/145 (7%)

Query: 8   NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTI--KFDIWD 65
           +  + + + G+ G+GK+S +         +   +  G    T      +         WD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 66  TAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
             G    +     Y              I++    +      + +          + V  
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE---FYFVRT 170

Query: 124 KVDL----EEKRKVKNEEGELYAQE 144
           KVD     E   + +  + E   Q+
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQD 195

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 19/176 (10%), Positives = 53/176 (30%), Gaps = 10/176 (5%)

Query: 7   KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT 66
            +  +++   G    GK+S +      +       T G      +  + +     D+   
Sbjct: 13  SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72

Query: 67  AGQERYHSL---------APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI 117
              E    +           +  R +   +VV         +  ++ ++         L+
Sbjct: 73  GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132

Query: 118 MFLVANKVDLEEKRKVKNE-EGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
           +   A+K+    ++   N     + A    +     S+     V++L  ++    +
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 188

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 4/165 (2%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
           +++G    GK++L  + V  +     E   G        ++      F + DT G     
Sbjct: 4   LIVGRPNVGKSTLFNKLV-KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 74  SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133
                         ++ +   +      K+ + +        L    V   +   +   +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 134 KNEEGELYAQENGLSFLE---TSAKSAHNVNELFYEIAKRLAEVN 175
           +  E E+  +   L F E    SA+   N++ +   I K+L E  
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG 167

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 11  VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70
           +K+ ++G    GK++L    +  +         G         +     K+   DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 71  RYHSLAPMYYRG-----------AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           R   + P                 A  VV+    +     + ++    ++R+G  ++++F
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 120 LVANKVDLEEKRKVKNEE--GELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172
              + V   EKR  +  +   E     +    + TSA    N++ +   +    A
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 9/166 (5%)

Query: 14  VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73
            ++G    GK++L+   +  +                   L E   +    DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 74  SLAPMYYRGA------AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127
                +              VV+ +          + V    +     + + LV NK+D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 128 EEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
            +  +   +       E        SA     V EL  ++   + E
Sbjct: 128 AKYPEEAMKAYHELLPEA--EPRMLSALDERQVAELKADLLALMPE 171

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 26/183 (14%)

Query: 14  VLLGDMGTGKTSLVLRFVK------------------GQFFDFQESTIGAAFFTQVLSLN 55
           +  G    GK++L+ R                                G  F   +    
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 56  EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNP 114
           +  IK +I         +    +      AA  +              ++ Q L+    P
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 115 NLIMFLVANKVDLEEKRKVK----NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170
                +  NK+D  +  +       E+ E+   E    F+  SAK   N+  L   I + 
Sbjct: 124 ---TIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180

Query: 171 LAE 173
           + E
Sbjct: 181 IRE 183

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 3e-05
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 10/175 (5%)

Query: 6   NKNIQVKLVLLGDMGTGKTSLVLRF-------VKGQFFDFQESTIGAAFFTQVLSLNEVT 58
           +K+    + ++G    GK++L+ +           +    +   +G        ++   T
Sbjct: 1   DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60

Query: 59  IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118
               + +     R  +             +V  +     +    + V    R+G   +I+
Sbjct: 61  PGLHMEEKRAINRLMN--KAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVIL 118

Query: 119 FLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173
             V    +++EK  +      L +Q N L  +  SA++  NV+ +   + K L E
Sbjct: 119 A-VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 9/169 (5%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71
           ++ L G    GK+S +   +  +      S  G         +N+     D+      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 72  YHSLAPMYYRGAAA---------AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVA 122
             S    + R             AVV              +  + L+  G P +++   A
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171
           +K+   +  K      +    +     +  S+++    +E +  I K +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 7/161 (4%)

Query: 12  KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--Q 69
           ++V++G    GK++L+ R +  +         G         +    I F I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDIT-SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128
           E    +  +        +   DI   +               +   N    +V NKVD+ 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169
           EK   +  + +L    +    ++ SA     + +L   I +
Sbjct: 121 EKINEEEIKNKLGTDRH---MVKISALKGEGLEKLEESIYR 158

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 7/117 (5%)

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF 119
           +    D  G E   +           A++V          + ++    L   G  NLI+ 
Sbjct: 87  RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIV 146

Query: 120 LVANKVDLEEKR---KVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIAKRL 171
              NKVD+  K        +  +         +  +  SA    N++ L   I + +
Sbjct: 147 --QNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 201

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 11/149 (7%)

Query: 4   TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDI 63
           T+N +  +  VL+G  G+GK+++                + AAF           I+   
Sbjct: 1   TTNHDHHI-YVLMGVSGSGKSAVASEVAH---------QLHAAFLDGDFLHPRRNIEKMA 50

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVAN 123
                 +            AA A+   +  S+      KK  ++L R+GNPNL    +  
Sbjct: 51  SGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG 110

Query: 124 KVDLEEKRKVKNEEGELYAQENGLSFLET 152
             D+ E R +K  +G  +  +  ++  ET
Sbjct: 111 DFDVIESR-LKARKGHFFKTQMLVTQFET 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.7
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.59
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.44
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.44
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.25
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.01
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.98
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.84
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.73
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.72
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.46
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.43
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.33
d1okkd2	207	GTPase domain of the signal recognition particle r	98.31
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.31
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.1
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.03
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.01
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.95
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.94
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.79
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.77
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.71
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.69
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.67
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.6
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.58
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.58
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.58
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.56
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.46
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.46
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.45
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.45
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.43
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.43
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.43
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.41
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.41
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.4
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.39
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.39
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.38
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.37
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.37
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.37
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.36
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.35
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.34
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.32
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.32
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.32
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.29
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.28
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.25
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.25
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.24
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.24
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.2
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.2
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.19
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.19
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.18
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.17
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.16
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.15
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.11
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.1
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.07
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.06
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.05
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.97
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.93
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.89
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.87
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.85
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.83
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.8
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.79
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.76
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.72
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.69
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.63
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.62
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.6
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.59
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.55
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.49
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.4
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.35
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.33
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.21
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.16
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.12
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.08
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.07
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.06
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.04
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.02
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.01
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.9
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.87
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.77
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.76
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.72
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.71
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.63
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.6
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.56
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.56
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.54
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.53
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.5
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.49
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.48
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.38
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.33
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.32
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.3
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.19
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.18
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.11
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.04
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.99
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.97
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.96
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.96
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.83
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.76
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.56
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.53
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.23
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.23
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.99
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.86
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.67
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.44
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.36
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.18
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.67
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.39
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.96
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.03
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.53
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.42
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.18
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.13
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.88
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.75
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.45
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.41
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.22
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.19
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.11
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.22
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.18
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.56
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.68
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.58
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.24
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.48

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-37  Score=216.03  Aligned_cols=167  Identities=35%  Similarity=0.636  Sum_probs=156.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-+||+++|.+|||||||+++|.++.+.+...++.+.+.....+......+.+.+||+||++.+..+++.+++.+|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            56799999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||+++++++..+..|+..+........|+++++||.|+.+...+...++..+++.++++|+++||++|.|++++|++|
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            99999999999999999988888777899999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.++
T Consensus       163 ~~~i~ek  169 (169)
T d3raba_         163 VDVICEK  169 (169)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhC
Confidence            9998763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=214.86  Aligned_cols=165  Identities=44%  Similarity=0.779  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.+||+|+|.+|||||||++++.++.+.+.+.++.+..........++..+.+.+||++|.+.+..+++.++.++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||++++++++.+..|+..+........|+++++||.|+.+.+.++..++..+++.++++|+++||++|.|++++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999988777678889999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 029103          169 KRLAE  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-37  Score=215.08  Aligned_cols=171  Identities=28%  Similarity=0.496  Sum_probs=154.0

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      +++...+||+|+|.+|||||||+++|..+.+...+.++. .+.....+..++..+.+.+||++|.+++...+..++..+|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            356678999999999999999999999998887766654 4555677888999999999999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||++++.+++.+..|+..+.+. ...+.|+++|+||.|+.+.+.....++..++..++++|+++||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999987664 3578899999999999888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 029103          164 FYEIAKRLAEVNP  176 (199)
Q Consensus       164 ~~~l~~~~~~~~~  176 (199)
                      |+.|++.+.+++.
T Consensus       160 f~~l~~~i~k~~~  172 (173)
T d2fn4a1         160 FEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-37  Score=214.33  Aligned_cols=163  Identities=35%  Similarity=0.607  Sum_probs=153.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      ||++++++++.+..|++.+... .+++|+++|+||+|+.+.+.+...+++.+++.++++|+++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE-VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             Eeccchhhhhhccccccccccc-CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            9999999999999999998776 457899999999999988889999999999999999999999999999999999999


Q ss_pred             HHHh
Q 029103          170 RLAE  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-37  Score=214.23  Aligned_cols=167  Identities=41%  Similarity=0.721  Sum_probs=156.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-+||+++|.+|||||||+++|..+.+.....++.+.++....+.+.+..+.+.+||++|++.|..+++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            46799999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+........|+++|+||.|+.+..++...++..+++.++++++++||++|.|++++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999999999888877889999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.+.
T Consensus       163 ~~~l~~~  169 (171)
T d2ew1a1         163 ACRLISE  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=210.76  Aligned_cols=169  Identities=41%  Similarity=0.713  Sum_probs=154.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-+||+|+|.+|||||||++++.++.+...+.++.+.......+..++..+.+.+||++|.+.|...+..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            46799999999999999999999999988888888888888888999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||.++++++..+..|+..+.....+++|+++|+||+|+.+...........+...++.+|+++||++|+|++++|++|
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999999888899999999999999877788888888899999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 029103          168 AKRLAEVNP  176 (199)
Q Consensus       168 ~~~~~~~~~  176 (199)
                      ++.+.+..+
T Consensus       162 ~~~i~~~~~  170 (175)
T d2f9la1         162 LTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999876543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=208.76  Aligned_cols=164  Identities=42%  Similarity=0.760  Sum_probs=154.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-+||+|+|.+|||||||++++.++.+.....++.+.+........++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            46789999999999999999999999988888888888899999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||+++.++++.+..|+..+.+......|+++++||.|+.........++..+++.++++|+++||++|.|++++|++|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988888899999999999998888888899999999999999999999999999999999


Q ss_pred             HHHH
Q 029103          168 AKRL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=209.22  Aligned_cols=164  Identities=32%  Similarity=0.482  Sum_probs=149.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.+||+|+|.+|||||||+++|.++.+.+.+.++.+..+ ...+..++..+.+.+||++|.+.+..++..++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3578999999999999999999999988887788877664 466778999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++++++.+..|+..+.+.. ..++|+++++||+|+...+.++..++..++++++++|+++||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999887654 578999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998775

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=211.50  Aligned_cols=163  Identities=27%  Similarity=0.344  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||++++.+..+.. ..++ ....+...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            699999999999999999998765543 2333 33344566778899999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK  169 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~  169 (199)
                      |++++.+++.+..|+..+.... ...+|+++|+||+|+.+..+++..++..++..++++|+++||++|.|++++|++|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999987754 467899999999999988888999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 029103          170 RLAEVN  175 (199)
Q Consensus       170 ~~~~~~  175 (199)
                      .+..++
T Consensus       160 ~i~~~~  165 (168)
T d2gjsa1         160 QIRLRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.3e-36  Score=207.55  Aligned_cols=164  Identities=46%  Similarity=0.787  Sum_probs=155.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ..++||+|+|.+|||||||+++|..+.+.+.+.++..................+.+||++|++.+..++..++..+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46899999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++++++.+..|+..+........|+++|+||.|+.+.+.+...++..+++.++++|+++||++|.|++++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999999888888999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHH
Q 029103          168 AKRL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=209.29  Aligned_cols=162  Identities=46%  Similarity=0.779  Sum_probs=153.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+|+|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999888999988998889989999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |++++.+++.+..|+..+.....++.|+++|+||.|+.+.......++..+++.++++|+++||++|+|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777899999999999998888888899999999999999999999999999999999987


Q ss_pred             HH
Q 029103          171 LA  172 (199)
Q Consensus       171 ~~  172 (199)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            64

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=210.27  Aligned_cols=168  Identities=38%  Similarity=0.677  Sum_probs=157.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++.+||+|+|.+|||||||+++|.++.+.+.+.++.+..........+.....+.+||+||++++..+++.++..+|+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            46799999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||.++++++..+..|+..+......++|+++++||.|+....+.....+..+++.++++|+++||++|+|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999999888878899999999999998888888889999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.++.
T Consensus       163 ~~~i~~~~  170 (174)
T d2bmea1         163 ARKILNKI  170 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=209.10  Aligned_cols=167  Identities=42%  Similarity=0.762  Sum_probs=152.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      |-+||+|+|++|||||||++++.++.+...+.+.................+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999888888888888888888888999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||++++.+++.+..|+..+......++|+++|+||+|+.........++..++..++++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888788999999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 029103          169 KRLAEVN  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +.+.++.
T Consensus       162 ~~i~~~~  168 (173)
T d2a5ja1         162 KEIYRKI  168 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=211.40  Aligned_cols=171  Identities=38%  Similarity=0.689  Sum_probs=160.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      .++-+||+|+|++|||||||+++|..+.+...+.++.+..+....+.+.+..+.+.+||+||++.+..++..+++.++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45789999999999999999999999998888889999999988999999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||+++++++.....|+..+.+......|+++++||.|+.+.......+...++...++.|+++||++|.|++++|++
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999999999888877889999999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 029103          167 IAKRLAEVNPS  177 (199)
Q Consensus       167 l~~~~~~~~~~  177 (199)
                      |++.+.+....
T Consensus       163 l~~~i~~~~~~  173 (194)
T d2bcgy1         163 MARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHCCH
T ss_pred             HHHHHHHHhhh
Confidence            99999876544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-35  Score=206.81  Aligned_cols=165  Identities=32%  Similarity=0.513  Sum_probs=149.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +.+||+++|.+|||||||++++.++.+.+.+.++.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            579999999999999999999999988877777766444 5566788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELFYE  166 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~~~  166 (199)
                      |||++++++++.+..|+..+.+.. ..+.|+++++||+|+.+.+.++.+++..+++.++++|+++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999987653 5689999999999999888888999999999999999999999886 99999999


Q ss_pred             HHHHHHhh
Q 029103          167 IAKRLAEV  174 (199)
Q Consensus       167 l~~~~~~~  174 (199)
                      |++.+.++
T Consensus       162 l~~~i~~~  169 (169)
T d1x1ra1         162 LVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=6.2e-36  Score=208.09  Aligned_cols=164  Identities=32%  Similarity=0.572  Sum_probs=146.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +-+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|.+++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            467999999999999999999999998887888877655 4566788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|++.+.+.. .++.|+++|+||.|+.+.++++..++..+++.++++|+++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999887653 5789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            998765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=209.34  Aligned_cols=170  Identities=24%  Similarity=0.405  Sum_probs=145.7

Q ss_pred             CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103            1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY   80 (199)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~   80 (199)
                      ||.. +....+||+|+|.+|||||||+++|+.+.+...+.++.+. .........+..+.+.+||++|++.+..++..++
T Consensus         1 m~~~-~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~   78 (185)
T d2atxa1           1 MAHG-PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   78 (185)
T ss_dssp             CSSC-CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             CCCC-CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcc
Confidence            6666 4677999999999999999999999999988877777754 3455566778889999999999999999999999


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-C
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-L  147 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~  147 (199)
                      ..+|++++|||++++++++....|+....+....+.|+++|+||.|+.+            .+.++..++..+++.++ +
T Consensus        79 ~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          79 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             cccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            9999999999999999998876554444444467899999999999864            34677888899999887 7


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          148 SFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      +|+++||++|.|++++|+.+++.+.
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHc
Confidence            8999999999999999999998874

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=207.26  Aligned_cols=166  Identities=64%  Similarity=1.015  Sum_probs=156.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ...+||+|+|.+|||||||+++|..+.+...+.++.+..............+.+.+||++|++.+..++..+++.+++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            35789999999999999999999999999888999999999899999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||+++.++++.+..|+..+.+...++.|+++++||+|+.+.+.++.+.+..++..++++|+++||++|.|++++|+.|
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999999888878899999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+.+
T Consensus       164 ~~~i~~  169 (170)
T d1r2qa_         164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.6e-36  Score=208.06  Aligned_cols=168  Identities=38%  Similarity=0.705  Sum_probs=127.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++-+||+|+|.+|||||||+++|+++.+.....++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            46789999999999999999999998888878888888999999999999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      +|||++++.+++.+..|+..+......+.|+++++||.|+.........++..++...+++|+++||++|+|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988878899999999999998887888888999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      ++.+.++.
T Consensus       164 ~~~i~~k~  171 (173)
T d2fu5c1         164 ARDIKAKM  171 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=207.82  Aligned_cols=164  Identities=24%  Similarity=0.391  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+++|++|||||||+++|..+.+...+.++.+.. ........+..+.+.+||++|+++|...+..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            46999999999999999999999999888777777644 45556678889999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-CcEEEeccC
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAK  155 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~  155 (199)
                      |||+++++|++.+..|+........++.|+++++||.|+.+            ...+...++..+++.++ ++|+++||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998766555555567899999999999864            23477888899998864 789999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 029103          156 SAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       156 ~~~~v~~~~~~l~~~~~~  173 (199)
                      +|.||+++|+.+++.+.+
T Consensus       161 ~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTS
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999988765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-36  Score=209.30  Aligned_cols=163  Identities=33%  Similarity=0.473  Sum_probs=145.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+|+|.+|||||||+++|+++.+.+.+.++.+..+ ......++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999988877777776544 44566788999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      ||++++++++.+..|+..+....  ..++|+++|+||+|+.+.++++..++..+++.++++|+++||++|.|++++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998876543  4788999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+.+
T Consensus       161 ~~~~~~  166 (171)
T d2erxa1         161 LNLEKR  166 (171)
T ss_dssp             HHTCCS
T ss_pred             HHHHHH
Confidence            876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=205.00  Aligned_cols=166  Identities=30%  Similarity=0.531  Sum_probs=145.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+|+|.+|||||||++++..+.+...+.++.+ +........++..+.+.+||++|.+.+...+..++..+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            358999999999999999999999988877777655 4556667789999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||.+++++++.+..|+..+.... ....|+++|+||.|+.+...+...++..+++.++++|+++||++|.|++++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998766543 5688999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 029103          168 AKRLAEVN  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=204.22  Aligned_cols=163  Identities=35%  Similarity=0.593  Sum_probs=147.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+++|.+|||||||+++|+++.+.+.+.++.+ +........++..+.+.+||++|.+.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999999999999988877777666 4456667788999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+.... .++.|+++|+||+|+.+.......++..+++.++++|+++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999999999998877654 5789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 029103          168 AKRLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=203.39  Aligned_cols=163  Identities=31%  Similarity=0.464  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +.||+|+|.+|||||||++++..+.+.+.+.++.+ .........++..+.+.+||++|++.+..+++.++.++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999998887777765 44456667788999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAKS  156 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||++++++++.+..|+........++.|+++++||+|+.+            .+.+...++..+++.++ .+|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999887665555454467899999999999864            23567788899999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029103          157 AHNVNELFYEIAKRLAE  173 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~  173 (199)
                      |.|++++|+.|++.+.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-35  Score=202.61  Aligned_cols=163  Identities=55%  Similarity=0.913  Sum_probs=151.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ..+||+++|.+|||||||+++|..+.+.+.+.++.+..+....+...+..+.+.+||++|.+.+..+++.++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            47899999999999999999999999998888999999888899999999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc---cccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE---KRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |||++++.+++.+..|+..+........|+++++||.|+.+   .+.+...++..+++.++++|+++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887788899999999999864   467788999999999999999999999999999999


Q ss_pred             HHHHHH
Q 029103          166 EIAKRL  171 (199)
Q Consensus       166 ~l~~~~  171 (199)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=200.02  Aligned_cols=165  Identities=42%  Similarity=0.740  Sum_probs=143.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      +..+||+|+|++|||||||++++..+.+. ....++.+.+.....+...+..+.+.+|||+|++.+..++..++.++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            45789999999999999999999998875 44456677888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||+++++++..+..|+..+........|+++++||.|......+...++..+++.++++|+++||++|.|++++|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999998887777788999999999999988888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |++.+.
T Consensus       164 l~~~i~  169 (170)
T d2g6ba1         164 IAKELK  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=208.73  Aligned_cols=168  Identities=30%  Similarity=0.568  Sum_probs=149.2

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC----------eEEEEEEEeCCCccccccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE----------VTIKFDIWDTAGQERYHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~l~d~~g~~~~~~~~~   77 (199)
                      ++.+||+|+|++|||||||+++|.++.+.+.+.++.+.++....+..++          ..+.+.+||++|++.|..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4679999999999999999999999888887777777776666655433          346799999999999999999


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      .+++++|++|+|||++++.+++.+..|+..+.... ...+|+++|+||.|+.+.+.+...++..+++.++++|+++||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            99999999999999999999999999998766543 46788999999999998889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhC
Q 029103          157 AHNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~~  175 (199)
                      |+|++++|++|++.+.++.
T Consensus       163 ~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999987753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=201.98  Aligned_cols=163  Identities=33%  Similarity=0.594  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+++|.+|||||||++++..+.+.+.+.++.+..+ ......++..+.+.+||++|++.+...++.+++.+|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            578999999999999999999999999887777776554 4556678889999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |||++++.+++.+..|+..+... ..++.|+++|+||.|+.........++..++++ .+++|+++||++|.|++++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999887764 357899999999999998888888888999887 4789999999999999999999


Q ss_pred             HHHHHH
Q 029103          167 IAKRLA  172 (199)
Q Consensus       167 l~~~~~  172 (199)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998774

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-35  Score=202.91  Aligned_cols=163  Identities=34%  Similarity=0.516  Sum_probs=143.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|++|||||||+++++.+.+.+.+.++.+..+... ...++..+.+.+||++|.+.+. ....++..++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            68999999999999999999999998888888887766444 4568889999999999998764 456688999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC-HHHHHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN-VNELFYEI  167 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-v~~~~~~l  167 (199)
                      ||++++++++.+..|+..... ....+.|+++|+||+|+.+.+.++..++..++++++++|+++||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999888766544 3357899999999999988888999999999999999999999999985 99999999


Q ss_pred             HHHHHhh
Q 029103          168 AKRLAEV  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=200.11  Aligned_cols=163  Identities=41%  Similarity=0.754  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|.+|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            79999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR  170 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~  170 (199)
                      |.+++++++.+..|+..+........|++++++|.|+.. ......++..++..++++|+++||++|+|++++|++|++.
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            999999999999999888888788899999999999765 4566888999999999999999999999999999999999


Q ss_pred             HHhh
Q 029103          171 LAEV  174 (199)
Q Consensus       171 ~~~~  174 (199)
                      +.++
T Consensus       162 i~~k  165 (166)
T d1g16a_         162 IQEK  165 (166)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8774

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-36  Score=208.21  Aligned_cols=162  Identities=35%  Similarity=0.607  Sum_probs=142.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      -.+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+..++..++.++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999998888888989989988888889999999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA  168 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~  168 (199)
                      |||++++++++.+..|+..+... ..++|+++|+||.|+......  .+...++..++++|+++||++|+|++++|++|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHH-HCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhc-cCCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999988766 468999999999999765433  345577888999999999999999999999999


Q ss_pred             HHHHh
Q 029103          169 KRLAE  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+..
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=198.51  Aligned_cols=163  Identities=31%  Similarity=0.565  Sum_probs=146.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+|+|.+|||||||+++|.++.+...+.++.+..+... ....+..+.+.+||++|.+.+...++.++..++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            579999999999999999999999998887777777665544 5567888999999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI  167 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l  167 (199)
                      |||++++.+++.+..|+..+.... ..++|+++|+||.|+.. ..+...++..+++.++++|+++||++|+|++++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987754 46799999999999864 5567888999999999999999999999999999999


Q ss_pred             HHHHHh
Q 029103          168 AKRLAE  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=198.62  Aligned_cols=166  Identities=37%  Similarity=0.693  Sum_probs=152.7

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+.+||+|+|.+|||||||+++|.++.+.....+..+.......+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+.... ....|+++++||.|... ..+...++..+++.++++|+++||++|+|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999987755 46788899999999754 567788999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 029103          167 IAKRLAEV  174 (199)
Q Consensus       167 l~~~~~~~  174 (199)
                      |++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99999874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=198.17  Aligned_cols=165  Identities=28%  Similarity=0.382  Sum_probs=141.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC---cccccccccccccCCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG---QERYHSLAPMYYRGAA   84 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g---~~~~~~~~~~~~~~~d   84 (199)
                      ..+||+++|.+|||||||++++.+..+. ....++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3689999999999999999999977654 33455666777888888899999999999875   4444  5567889999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++|+|||++++.+++.+..|+..+.... .+++|+++|+||+|+.+.++++..++..++..++++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999999887643 478999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 029103          164 FYEIAKRLAEVN  175 (199)
Q Consensus       164 ~~~l~~~~~~~~  175 (199)
                      |+.|++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999987754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=199.28  Aligned_cols=165  Identities=26%  Similarity=0.434  Sum_probs=141.1

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      ++++||+|+|.+|||||||+++|..+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..++..+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4689999999999999999999999998887777776 445566677899999999999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEecc
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSA  154 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~  154 (199)
                      +|||++++++++.+..|+.........+.|+++|+||+|+.+.            ......++..+++.++ ++|+++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999876444443444678999999999998542            2355667788888877 78999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 029103          155 KSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       155 ~~~~~v~~~~~~l~~~~~~  173 (199)
                      ++|.||+++|+.|++.++.
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999998865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-33  Score=193.79  Aligned_cols=159  Identities=36%  Similarity=0.649  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCCEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-~~~~~~~~~d~~i~   88 (199)
                      .+||+++|.+|||||||++++..+.+.....++.+................+.+||++|...+.. .++.++.++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999988889998899889999999999999999999877654 46778999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC---CCCHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF  164 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~  164 (199)
                      |||++++++++.+..|+..+.+.. ..++|+++|+||+|+.+..+++..+++.+++.++++|+++||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999987754 57899999999999998888999999999999999999999986   56999999


Q ss_pred             HHHH
Q 029103          165 YEIA  168 (199)
Q Consensus       165 ~~l~  168 (199)
                      .+|+
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8873

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-33  Score=197.02  Aligned_cols=164  Identities=37%  Similarity=0.679  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+|++++||
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHH-HHhCCcEEEeccCCCCCHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYA-QENGLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |.+++.+++.+..|+..+....    ..++|+++|+||+|+.+. .....+...++ ...+++|+++||++|.|++++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            9999999999999998876643    356899999999998764 44555555555 45689999999999999999999


Q ss_pred             HHHHHHHhhC
Q 029103          166 EIAKRLAEVN  175 (199)
Q Consensus       166 ~l~~~~~~~~  175 (199)
                      +|++.+.++.
T Consensus       162 ~l~~~i~~~~  171 (184)
T d1vg8a_         162 TIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999987754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-33  Score=195.26  Aligned_cols=164  Identities=38%  Similarity=0.657  Sum_probs=130.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      +||+++|++|||||||+++|.++.+.+.+.++.+.......... +.....+.+||++|++.+...+..+++.++++++|
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLV   82 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEE
Confidence            79999999999999999999999888777777766666655554 34557789999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccc-cCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHH
Q 029103           90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKR-KVKNEEGELYAQENG-LSFLETSAKSAHNVNEL  163 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~  163 (199)
                      ||++++.+++.+..|+..+....    ..++|+++++||+|+.+.. .++..++..+++.++ ++|+++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~  162 (175)
T d1ky3a_          83 YDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA  162 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred             eecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Confidence            99999999999999999876532    3578999999999998654 467788889998886 78999999999999999


Q ss_pred             HHHHHHHHHhh
Q 029103          164 FYEIAKRLAEV  174 (199)
Q Consensus       164 ~~~l~~~~~~~  174 (199)
                      |++|++.+.++
T Consensus       163 f~~l~~~~l~~  173 (175)
T d1ky3a_         163 FEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988775

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-33  Score=194.90  Aligned_cols=163  Identities=26%  Similarity=0.434  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      ++||+++|.+|||||||++++..+.+.+.+.++... ........++..+.+.+||++|++.+...++.+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            689999999999999999999999988877777653 4445566788999999999999999999999999999999999


Q ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103           90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLETSAKS  156 (199)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||+++++|++.+..|+........++.|+++|+||.|+.+            ...++..+...+++.++ ..|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988766555444467999999999999853            34577888999999887 5799999999


Q ss_pred             CC-CHHHHHHHHHHHHHh
Q 029103          157 AH-NVNELFYEIAKRLAE  173 (199)
Q Consensus       157 ~~-~v~~~~~~l~~~~~~  173 (199)
                      |. +++++|+.+++.+..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-32  Score=190.57  Aligned_cols=165  Identities=34%  Similarity=0.617  Sum_probs=145.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+-+||+|+|.+|||||||++++..+.+.+.+.++.+...........+..+.+.+||++|...+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45789999999999999999999999998888888988888888888999999999999999999889999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNE  162 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~  162 (199)
                      +++|.+++.+++.+..|+..+....    ..+.|+++|+||.|+.+ +.+...++..+++.. +++|+++||++|.|+++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            9999999999999999998876532    35789999999999865 567888899999876 48999999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|++|++.+..
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-31  Score=184.56  Aligned_cols=161  Identities=23%  Similarity=0.346  Sum_probs=134.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+++||+++|++|||||||++++.++.+.. ..++.. ..+...+.+++..+.+.+||++|+..+     .+++.+|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            458999999999999999999999988755 334433 344666778999999999999998754     3788899999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCc--ccccCCHHHHHHHHHH-hCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLE--EKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++++++.+..|+..+....   ...+|+++|+||.|+.  ....+...++..++.. ++++|+++||++|.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999999999998876543   4678999999988874  3456777788888654 57899999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 029103          162 ELFYEIAKRLAEVN  175 (199)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (199)
                      ++|..|++.+....
T Consensus       156 ~~F~~l~~~i~~~~  169 (175)
T d2bmja1         156 RVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999887754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=185.93  Aligned_cols=157  Identities=24%  Similarity=0.339  Sum_probs=126.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .++||+++|++|||||||+++|.++.+.+.+.++.+..+..  ...  ..+.+.+||+||++.+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhc
Confidence            37999999999999999999999999887777777655433  333  34778999999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHH-HH----HHHHhCCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEG-EL----YAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |||+++.++++....|+..+.... .++.|+++++||.|+.+...  ..+. ..    .+...+++++++||++|+|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            999999999999888887765543 57899999999999875332  2221 11    1223456799999999999999


Q ss_pred             HHHHHHHHH
Q 029103          163 LFYEIAKRL  171 (199)
Q Consensus       163 ~~~~l~~~~  171 (199)
                      +|+||++++
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=4.6e-31  Score=182.70  Aligned_cols=158  Identities=18%  Similarity=0.255  Sum_probs=122.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+++|++|||||||+++|.+..+. ...++.+...  ..+.  ...+.+.+||++|++.+...+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLE--HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEE--ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eecc--ccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            3689999999999999999999876553 3445554333  2233  334778899999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHH
Q 029103           89 VYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |||+++..++.....++..... ....+.|++||+||.|+.+....  .+.....     ...+++++++||++|+|+.+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999998887766655443 33578999999999999754433  2222211     22345789999999999999


Q ss_pred             HHHHHHHHHHh
Q 029103          163 LFYEIAKRLAE  173 (199)
Q Consensus       163 ~~~~l~~~~~~  173 (199)
                      +|+||++++..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=2.3e-31  Score=186.08  Aligned_cols=159  Identities=21%  Similarity=0.284  Sum_probs=122.7

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA   84 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d   84 (199)
                      .++++++||+++|++|||||||+++|.++.+.. ..++.+.+  ......  ..+.+.+||++|++.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~--~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFN--IKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEE--EEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeee--EEEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            344568999999999999999999998876643 22333322  233333  3477899999999999999999999999


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHH-----HHHHHhCCcEEEeccCCCC
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE-----LYAQENGLSFLETSAKSAH  158 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++++|||+++..++.....|+..+.... ..++|+++++||.|+.+....  ....     ......++.++++||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            9999999999999999988877765433 467899999999999764322  2111     1222345679999999999


Q ss_pred             CHHHHHHHHHHH
Q 029103          159 NVNELFYEIAKR  170 (199)
Q Consensus       159 ~v~~~~~~l~~~  170 (199)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.5e-31  Score=188.08  Aligned_cols=161  Identities=24%  Similarity=0.348  Sum_probs=121.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~   86 (199)
                      ..+++||+++|.+|||||||+++|.++.+.. ..++.+.....  .  ....+.+.+||++|++.+...+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVET--L--SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEE--E--EETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEE--E--eeCCEEEEEEecccccccchhHHhhhccceeE
Confidence            4568999999999999999999998766543 33444433322  2  22347789999999999999999999999999


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHH-----HHHHhCCcEEEeccCCCCCH
Q 029103           87 VVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ++|+|++++.++.....|+..... ....+.|++|++||+|+.+...  ..+...     .+...++.++++||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999888887766544 3357899999999999865322  222211     22334567999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 029103          161 NELFYEIAKRLAEV  174 (199)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (199)
                      +++|++|++.+.++
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998774

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=181.02  Aligned_cols=159  Identities=22%  Similarity=0.389  Sum_probs=120.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+++||+++|++|||||||+++|..+.+.. ..++.+...  ..  .....+.+.+||+||.+.+...+..++..+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~--~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE--EE--EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE--EE--eeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            458999999999999999999998766433 222333222  22  2333467889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHH---HHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE---GELYAQENGLSFLETSAKSAHNVNEL  163 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|+++.+++..+..|+....+. .....|+++++||+|+.+........   ....+...++.++++||++|+|++|+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999988877776543 35789999999999997533221111   11222234567999999999999999


Q ss_pred             HHHHHHHH
Q 029103          164 FYEIAKRL  171 (199)
Q Consensus       164 ~~~l~~~~  171 (199)
                      |++|.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=168.71  Aligned_cols=156  Identities=18%  Similarity=0.304  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~   90 (199)
                      +||+++|++|||||||+++|.++.+..........     ....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988775543333221     2233455678999999999999889999999999999999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCH---HHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103           91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVNELFYE  166 (199)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |.+++.++..+..|+..+.... ....|+++++||.|+.+......   .....++...+++++++||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999887777765533 57789999999999875332211   1112233345678999999999999999999


Q ss_pred             HHHHH
Q 029103          167 IAKRL  171 (199)
Q Consensus       167 l~~~~  171 (199)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=161.64  Aligned_cols=157  Identities=20%  Similarity=0.304  Sum_probs=115.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      .+++||+|+|.+|||||||+++|.++.+... .++.+..  ......  ....+.+||+++.+.+...+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEee--cceEEEEeccccccccccchhhhhccceeee
Confidence            4679999999999999999999998776432 2222211  222222  2467889999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHH-----HHHhCCcEEEeccCCCCCHH
Q 029103           88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELY-----AQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +++|.++..+++....++....... ....|+++++||.|+.....  ..+....     ....+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999998888766655544433 47899999999999865432  2222222     23345679999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      ++|++|.+++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=154.03  Aligned_cols=161  Identities=22%  Similarity=0.348  Sum_probs=120.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      .++||+++|.+|||||||++++.++.+... .++.+..  ....  ....+.+.+|+.+|.+.+...+...+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFN--VETV--TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEE--EEEE--EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-eccccee--eeee--ccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            469999999999999999999999876542 2222222  2222  2234678899999999999999999999999999


Q ss_pred             EEECCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCcccccCCH---HHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103           89 VYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKRKVKN---EEGELYAQENGLSFLETSAKSAHNVNELF  164 (199)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+.+..+......++.. +........|+++++||.|+.+......   ..+..++...+++|+++||++|+|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999988877777655444 3334457889999999999976432211   11122334456789999999999999999


Q ss_pred             HHHHHHHHhh
Q 029103          165 YEIAKRLAEV  174 (199)
Q Consensus       165 ~~l~~~~~~~  174 (199)
                      ++|.+.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.1e-25  Score=155.84  Aligned_cols=159  Identities=17%  Similarity=0.128  Sum_probs=107.0

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APM   78 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~   78 (199)
                      .+.-.|+|+|.+|||||||+|+|++...... ..+..............  ...+.+||+||.......        ...
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhccccccc
Confidence            3455799999999999999999998654321 12222222222223233  356889999997543322        234


Q ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCC
Q 029103           79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSA  157 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~  157 (199)
                      .+.++|++++|+|++++..... ..|+..+... ..+.|+++|+||+|+....   +.....+....+ ..++++||++|
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~  155 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDE  155 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCH
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCC
Confidence            4688999999999987643322 3444444433 5678999999999986532   233344444444 56899999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029103          158 HNVNELFYEIAKRLAE  173 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~  173 (199)
                      .|+++++++|++.+.+
T Consensus       156 ~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         156 RQVAELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHHHHHTTCCB
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.8e-25  Score=158.57  Aligned_cols=160  Identities=16%  Similarity=0.183  Sum_probs=122.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+++|..|||||||++++..+.+.  +.++.+....    .+....+.+++||++|++.+...|..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            4799999999999999999999988763  4577765543    233455778899999999999999999999999999


Q ss_pred             EEECCCHH-----------HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----------------CCHHHHHHH
Q 029103           89 VYDITSMD-----------SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----------------VKNEEGELY  141 (199)
Q Consensus        89 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------------~~~~~~~~~  141 (199)
                      ++|.++..           ..+....|...+......+.|+++++||.|+.+...                ........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998753           345566777777777678999999999999743221                112222222


Q ss_pred             HH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          142 AQ----------ENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       142 ~~----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      ..          ...+.++++||++|.|+.++|+.|.+.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          1234578999999999999999999888764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.1e-26  Score=162.77  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      +++||+++|..|||||||+++|....++..     +.    .+..+......+++||++|++.+...|..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            479999999999999999999987665432     22    123344455788999999999999999999999999999


Q ss_pred             EEECCCHHHH-----------HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---------------cCCHHHHHH-H
Q 029103           89 VYDITSMDSF-----------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---------------KVKNEEGEL-Y  141 (199)
Q Consensus        89 v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------------~~~~~~~~~-~  141 (199)
                      |+|+++.+++           +....|...+........|+++++||.|+....               ......... +
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999987643           333445555555556889999999999963211               111122111 1


Q ss_pred             ----HH------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          142 ----AQ------ENGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       142 ----~~------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                          ..      ..++.++++||+++.||+++|+.+.+.+.++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence                11      1234678999999999999999999888664

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-24  Score=149.08  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=115.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (199)
                      ||+++|++|||||||+++|.++.+.. ..++.+....    ........+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999987653 3444433332    233334567899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH------------HHhCCcEEEeccCCCC
Q 029103           92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA------------QENGLSFLETSAKSAH  158 (199)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~  158 (199)
                      .++..++.....|+....... ..+.|+++++||.|+....  ...+.....            ...++.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999988888877776665543 5788999999999986532  222221111            1223568999999999


Q ss_pred             CHHHHHHHHHH
Q 029103          159 NVNELFYEIAK  169 (199)
Q Consensus       159 ~v~~~~~~l~~  169 (199)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999975

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=9.9e-24  Score=147.41  Aligned_cols=159  Identities=17%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cc---ccccccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SL---APMYYRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~---~~~~~~~~d   84 (199)
                      +|+++|.+|||||||+|+|++...........+...... .........+.+||+||.....    ..   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999987654332222222222222 2233334568899999954321    11   123467889


Q ss_pred             EEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           85 AAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        85 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++++++|....  ........|+...... ..+.|+++|+||+|+.+...  .....+.....+.+++.+||++|+|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998643  2233333333322111 24578999999999976443  2334444556788999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 029103          163 LFYEIAKRLAEV  174 (199)
Q Consensus       163 ~~~~l~~~~~~~  174 (199)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999998888654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.8e-25  Score=151.90  Aligned_cols=151  Identities=21%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------ccccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYR   81 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~   81 (199)
                      +||+++|.+|||||||+|+|++..... ...+..............  ...+.++|++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeecc--CceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999866432 122222222333333333  35678999999644322        1234578


Q ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103           82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      .+|++++++|..+....+....|...+... ..+.|+++|+||+|+.+.....       ....+.+++++||++|+|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            999999999999877666655554444443 5678999999999986532211       11245789999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          162 ELFYEIAKRL  171 (199)
Q Consensus       162 ~~~~~l~~~~  171 (199)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.8e-24  Score=147.07  Aligned_cols=159  Identities=19%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------ccccccccC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYRG   82 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------~~~~~~~~~   82 (199)
                      +|+|+|++|||||||+++|++..... .....+.+..............+.+||++|.....         .....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce-ecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            69999999999999999998754321 12222222222233334444568899999953221         223345688


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +|+++++.+.++...... ..++..+...   +.|+++|+||+|+.....  .....++.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            999999999876543322 4555555544   568999999999865321  2223333334445689999999999999


Q ss_pred             HHHHHHHHHHhhCCC
Q 029103          163 LFYEIAKRLAEVNPS  177 (199)
Q Consensus       163 ~~~~l~~~~~~~~~~  177 (199)
                      ++++|.+.+.+...+
T Consensus       155 L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         155 MLETIIKKLEEKGLD  169 (171)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999886543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=1.6e-23  Score=146.17  Aligned_cols=163  Identities=17%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc-----ceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-----GAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG   82 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~   82 (199)
                      .+.++|+++|++++|||||+|+|++...........     +................+.++|++|+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            357899999999999999999999643221111111     111111111222234568899999999888888888899


Q ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHH----hCCcEEEeccCC
Q 029103           83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE----NGLSFLETSAKS  156 (199)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~s~~~  156 (199)
                      +|++++|+|+.+....+ ....+..+..   .+.|+++++||+|+.+.....  ......+...    .+.+++++||++
T Consensus        83 ~d~~ilv~d~~~g~~~~-~~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQ-TGEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchh-hhhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            99999999998753222 2233333333   367899999999987643221  1112222221    235799999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      |+|++++++.|.+.+.+.
T Consensus       159 g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CTTHHHHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHhcCCcc
Confidence            999999999999988764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=4.8e-23  Score=144.02  Aligned_cols=157  Identities=19%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i   87 (199)
                      +++.||+++|++|||||||+++|.++.+... .++.+....  .....+  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5689999999999999999999998765432 233222222  233333  45779999999999999999999999999


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----------------hCCcE
Q 029103           88 VVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSF  149 (199)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (199)
                      +++|.++.........++..... ....+.|+++++||.|+....  ...........                 .++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC--CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888777655544433 335789999999999986532  23333332221                 13468


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029103          150 LETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      +++||++|+|++|+|+||.+++
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.7e-22  Score=143.13  Aligned_cols=158  Identities=18%  Similarity=0.224  Sum_probs=108.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v   89 (199)
                      .+||+++|.+|||||||++++.   +...+.++.+...  ..  ++.....+.+||++|++.+...|..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~--~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YD--FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EE--EEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EE--EeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   4444566766443  22  333456788999999999999999999999999999


Q ss_pred             EECCCHH----------HHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccc----------------cCCHHHHHHHH
Q 029103           90 YDITSMD----------SFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKR----------------KVKNEEGELYA  142 (199)
Q Consensus        90 ~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~  142 (199)
                      ++.++..          .++....++..+.. ....+.|+++++||.|+.+..                ......+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998742          34444455555443 335789999999999974311                11122233222


Q ss_pred             HH-----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          143 QE-----------NGLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       143 ~~-----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      ..           ..+.++++||+++.+|+++|+.+.+.+.+.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            21           135567899999999999999998887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.1e-23  Score=141.49  Aligned_cols=149  Identities=22%  Similarity=0.231  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---------cccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPMYY   80 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---------~~~~~~   80 (199)
                      +||+++|.+|||||||+|+|++..... ...+..............  ...+.+||+||......         .....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            689999999999999999999865321 122222222223333333  35678999999532111         112235


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV  160 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..+|++++|+|.+++....... +...+     ...++++++||.|+.+...  ..... .....+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~-~~~~~-----~~~~~i~~~~k~d~~~~~~--~~~~~-~~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEKIN--EEEIK-NKLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCCCC--HHHHH-HHHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhh-hhhhc-----ccccceeeeeeccccchhh--hHHHH-HHhCCCCcEEEEECCCCCCH
Confidence            7899999999999876544432 22222     4567899999999876432  22222 22234578999999999999


Q ss_pred             HHHHHHHHHH
Q 029103          161 NELFYEIAKR  170 (199)
Q Consensus       161 ~~~~~~l~~~  170 (199)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=5e-22  Score=139.25  Aligned_cols=161  Identities=19%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------------
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------------   74 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------------   74 (199)
                      ...+||+|+|.+|||||||+|+|++..... .................++  ..+.++|+||......            
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            347999999999999999999999765321 1111111122222233333  4577999999643221            


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----hCCcE
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----NGLSF  149 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~  149 (199)
                      .....+..+|++++|+|+..+.. .....++..+..   .+.|+++++||+|+....+....+.......     ...++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            22334678899999999975432 222344444444   3678999999999865444333333322222     23579


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          150 LETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                      +++||++|.|+++++++|.+.+...
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998877653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.4e-22  Score=140.60  Aligned_cols=151  Identities=19%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------------ccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------------SLA   76 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------------~~~   76 (199)
                      .|+++|.||||||||+|+|.+........+  +++.........    .+.++|+||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            699999999999999999998654322222  222222222222    25689999952111               112


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHH----------HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERA----------KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG  146 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  146 (199)
                      ......+|++++|+|...+......          ..+++.+..   .+.|+++|+||+|+.+..+   .....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            3346789999999998754322111          122333333   4788999999999764322   12222222222


Q ss_pred             -------CcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          147 -------LSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       147 -------~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                             ..++++||++|+|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                   2488999999999999999999998763

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=1.7e-22  Score=142.89  Aligned_cols=163  Identities=16%  Similarity=0.168  Sum_probs=107.6

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccc--eeEEEEEE-------------------EeCCeEEEEE
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIG--AAFFTQVL-------------------SLNEVTIKFD   62 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~--~~~~~~~~-------------------~~~~~~~~v~   62 (199)
                      +++.++|+++|+.++|||||+++|++......   ......  ..+.....                   ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            56789999999999999999999986332111   111111  11111111                   1122346789


Q ss_pred             EEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHH
Q 029103           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGEL  140 (199)
Q Consensus        63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~  140 (199)
                      ++|+||+..|.......+..+|++++|+|+.++.......+.+..+...  ...+++++.||.|+.+.....  ......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999999888877788999999999998763333444444444444  234578889999987643221  112222


Q ss_pred             HHHHh---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          141 YAQEN---GLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       141 ~~~~~---~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      +....   +++++++||++|+|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            22222   36799999999999999999887754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=3.4e-22  Score=144.39  Aligned_cols=160  Identities=19%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccce--eEEEEE--------------EEeCCeEEEEEEEeCCCcccccccc
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQV--------------LSLNEVTIKFDIWDTAGQERYHSLA   76 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~--~~~~~~--------------~~~~~~~~~v~l~d~~g~~~~~~~~   76 (199)
                      |+|+|++++|||||+++|++.............  ......              ..+.....++.++|||||..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999874322111111100  011110              1123345578899999999998888


Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH-------------H-------
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-------------E-------  136 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-------------~-------  136 (199)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .+.|+++++||+|+........             .       
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999986432222 344444443   3778999999999865332110             0       


Q ss_pred             HHH----HHHHH--------------hCCcEEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103          137 EGE----LYAQE--------------NGLSFLETSAKSAHNVNELFYEIAKRLAEVNP  176 (199)
Q Consensus       137 ~~~----~~~~~--------------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~  176 (199)
                      ...    .+...              ...+++++||++|.|++++++.|.....+...
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            000    00000              01368999999999999999999888766553

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=5.4e-22  Score=141.24  Aligned_cols=167  Identities=14%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccc--eeEEEEEEE------------------------e
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIG--AAFFTQVLS------------------------L   54 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~--~~~~~~~~~------------------------~   54 (199)
                      ++..++.++|+++|+.++|||||+++|++......   ......  .........                        .
T Consensus         2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (205)
T d2qn6a3           2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE   81 (205)
T ss_dssp             CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSC
T ss_pred             CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecc
Confidence            34556789999999999999999999986321100   000000  000000000                        0


Q ss_pred             CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103           55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK  134 (199)
Q Consensus        55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  134 (199)
                      ......+.++|+|||..|.......+..+|++|+|+|+.+.-...+.++.+......  ...|++|++||+|+.+.....
T Consensus        82 ~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          82 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             CEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHH
T ss_pred             ccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHH
Confidence            112356899999999999877777788999999999998753223334444444443  234788999999997543221


Q ss_pred             H--HHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103          135 N--EEGELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA  172 (199)
Q Consensus       135 ~--~~~~~~~~~~---~~~~~~~s~~~~~~v~~~~~~l~~~~~  172 (199)
                      .  .....+....   +++++++||++|.|++++++.|..++.
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            1  1112221111   367999999999999999998887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=9.6e-23  Score=142.91  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----ccc---ccccCCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LAP---MYYRGAA   84 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----~~~---~~~~~~d   84 (199)
                      +|+|+|+||||||||+|+|++........+..+........... ....+.+||+||......    ...   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            68999999999999999998765432222222222222222222 223578999999633221    111   2245678


Q ss_pred             EEEEEEECCCHHH---HHHHHHHH--HHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH--hCCcEEEeccCCC
Q 029103           85 AAVVVYDITSMDS---FERAKKWV--QELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSA  157 (199)
Q Consensus        85 ~~i~v~d~~~~~s---~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~  157 (199)
                      .++++++....+.   .+....+.  .........++|+++|+||+|+.+...    ....+...  .+.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEECCCC
Confidence            8888887664322   22211111  112222235789999999999876432    22333333  3678999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 029103          158 HNVNELFYEIAKRLAE  173 (199)
Q Consensus       158 ~~v~~~~~~l~~~~~~  173 (199)
                      +|++++++.|.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999998855

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1e-20  Score=134.73  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCCEEEEEE
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVVVY   90 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~~~~~~~~~d~~i~v~   90 (199)
                      +|+|+|++|||||||+++|.++.+... .++.+.+...... .......+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999877653 3444444433322 24556789999999998775 56678889999999999


Q ss_pred             ECCCHHHH-HHHHHHHHHH-HH--hCCCCceEEEEEeCCCCcccc
Q 029103           91 DITSMDSF-ERAKKWVQEL-QR--QGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        91 d~~~~~s~-~~~~~~~~~~-~~--~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      |+++..+. .....++..+ ..  .....+|++|++||+|+++..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99987653 4444444333 22  224678999999999997543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.8e-20  Score=132.20  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------------ccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------------LAP   77 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------------~~~   77 (199)
                      .+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|......             .+.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            4899999999999999999997553322233332222222222222   233566666322111             122


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hCCcEEEec
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLETS  153 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s  153 (199)
                      ..+..++++++++|++++.. .....+++.+...   +.|+++|+||+|+.+..+.. .....+...    .+.+++++|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            33566789999999876532 2223555555543   67899999999986543322 222222222    445799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 029103          154 AKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       154 ~~~~~~v~~~~~~l~~~~  171 (199)
                      |++|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.5e-21  Score=139.32  Aligned_cols=158  Identities=16%  Similarity=0.213  Sum_probs=112.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~   88 (199)
                      ...||+++|..|||||||++++..+.+    .++.|...  ..+.+.  .+.+.+||++|++.+...|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceEE
Confidence            478999999999999999999986653    35555433  333344  4678899999999999999999999999999


Q ss_pred             EEECCCH----------HHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCccccc----C--------------------
Q 029103           89 VYDITSM----------DSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRK----V--------------------  133 (199)
Q Consensus        89 v~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~----~--------------------  133 (199)
                      |+|.++.          ..+.+...++..+.. ....+.|++|++||+|+.+...    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9999853          234344444444433 3357899999999999853211    0                    


Q ss_pred             ------CHHHHHH-----HHHHh--------CCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103          134 ------KNEEGEL-----YAQEN--------GLSFLETSAKSAHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       134 ------~~~~~~~-----~~~~~--------~~~~~~~s~~~~~~v~~~~~~l~~~~~~~  174 (199)
                            ...++..     +...+        .+..+.+||.++.+++.+|+.+.+.+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  0112222     21111        13457899999999999999888777664

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=3.3e-21  Score=135.69  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=109.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC-------C-------CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ-------F-------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~   74 (199)
                      +.++|+++|+.++|||||+++|++..       .       ....+...+++.......+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            57999999999999999999997510       0       011122334455555566666677899999999999988


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC---HHHHHHHHHHhC-----
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENG-----  146 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-----  146 (199)
                      .....+..+|++++|+|+.+.- ..+.++.+..+...  ...|++|++||.|+.+..+.-   ..+...+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8777889999999999998753 23334545554443  335688999999986432211   112333333333     


Q ss_pred             CcEEEeccCCC----------CCHHHHHHHHHHHH
Q 029103          147 LSFLETSAKSA----------HNVNELFYEIAKRL  171 (199)
Q Consensus       147 ~~~~~~s~~~~----------~~v~~~~~~l~~~~  171 (199)
                      ++++++|+++|          .++.++++.|.+++
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            56999999988          47888887776543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.6e-19  Score=122.67  Aligned_cols=160  Identities=16%  Similarity=0.138  Sum_probs=99.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCeEEEEEEEeCCCccc---------cccccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAP   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~---------~~~~~~   77 (199)
                      .+--.|+|+|.+|||||||+|+|++........ ................  ..+..+|++|...         +.....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence            455679999999999999999999865432221 1121122222222222  3455678877421         122334


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKS  156 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      .....+++++++.|..+.....  ..+...+.   ....|.++++||.|..............+...++ .+++++||++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             cchhhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            4456778888899877543221  22222232   2456789999999986644333333444444455 5799999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 029103          157 AHNVNELFYEIAKRLAEV  174 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~~  174 (199)
                      |.|++++++.|.+++.+.
T Consensus       156 g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         156 GLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             TTTHHHHHHHHHTTCCBC
T ss_pred             CCCHHHHHHHHHHhCCCC
Confidence            999999999998887553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=3.2e-19  Score=126.36  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC--------CCCC-------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--------FFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      ++++|+++|++++|||||+++|+...        ....       .+...+++.......+...+.++.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            57999999999999999999997410        0000       00111334444444555566778899999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC-C--HHHHHHHHHHhC---
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV-K--NEEGELYAQENG---  146 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~--~~~~~~~~~~~~---  146 (199)
                      ......+..+|++|+|+|+.+.-..+. .+.+......   +.| ++|++||+|+.+..+. .  ..+...+....+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            888888899999999999987643333 4444545444   444 6778999998653211 1  122233333332   


Q ss_pred             --CcEEEeccCC
Q 029103          147 --LSFLETSAKS  156 (199)
Q Consensus       147 --~~~~~~s~~~  156 (199)
                        +++++.|+..
T Consensus       158 ~~i~~i~~sa~~  169 (204)
T d2c78a3         158 DEVPVIRGSALL  169 (204)
T ss_dssp             TTSCEEECCHHH
T ss_pred             ccceeeeeechh
Confidence              4578888753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=8.6e-19  Score=124.59  Aligned_cols=116  Identities=13%  Similarity=0.155  Sum_probs=81.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc----ccCCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY----YRGAA   84 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~----~~~~d   84 (199)
                      |+.+|+|+|+||||||||+|+|.++.+.+.    .+..  .....+......+.+||+||++.+...+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQ--EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCS--SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEec--ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            567999999999999999999998765432    1111  2223344555678899999998766554433    45568


Q ss_pred             EEEEEEECCC-HHHHHHHHHHH----HHHHHhCCCCceEEEEEeCCCCccc
Q 029103           85 AAVVVYDITS-MDSFERAKKWV----QELQRQGNPNLIMFLVANKVDLEEK  130 (199)
Q Consensus        85 ~~i~v~d~~~-~~s~~~~~~~~----~~~~~~~~~~~p~ivv~nK~D~~~~  130 (199)
                      .+++++|..+ ..+++....|+    ..+......++|+++++||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888764 44445544444    3344555688999999999998653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.75  E-value=1.2e-17  Score=119.50  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC-----------------------------CcCccceeEEEEEE
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----------------------------QESTIGAAFFTQVL   52 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~   52 (199)
                      +......++|+++|+.++|||||+++|+..  .....                             .....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            345567899999999999999999999641  11000                             00001111122222


Q ss_pred             EeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103           53 SLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK  132 (199)
Q Consensus        53 ~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  132 (199)
                      .+......+.++|+|||..|..........+|++++|+|+.+.-. .+..+.+......  .-..++++.||.|+.+..+
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~-~Qt~e~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcc-cchHHHHHHHHHc--CCCEEEEEEEccccccccc
Confidence            333345678899999999998888888899999999999986532 2333333433333  1233788899999975332


Q ss_pred             CCH----HHHHHHHHHhC-----CcEEEeccCCCCCHH
Q 029103          133 VKN----EEGELYAQENG-----LSFLETSAKSAHNVN  161 (199)
Q Consensus       133 ~~~----~~~~~~~~~~~-----~~~~~~s~~~~~~v~  161 (199)
                      ...    .+...+....+     ++++++||++|+|+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            111    12233444443     367999999999873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.4e-17  Score=116.11  Aligned_cols=162  Identities=12%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------c--
Q 029103            5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------L--   75 (199)
Q Consensus         5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~--   75 (199)
                      .+....++|+++|.+|||||||+|+|.+............................+..++.++......       .  
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            3456689999999999999999999987654332222222222222222222222233333322221111       1  


Q ss_pred             -ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH---h--CCcE
Q 029103           76 -APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE---N--GLSF  149 (199)
Q Consensus        76 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~--~~~~  149 (199)
                       ........+.++.+.+....... ....++..+...   ..++++++||.|+.+..... .....+...   .  ..++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVDS---NIAVLVLLTKADKLASGARK-AQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCHHHHH-HHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhheeEEEEeecccccchh-HHHHHHHHhhhc---cccccchhhhhhccCHHHHH-HHHHHHHHHHHhhCCCCcE
Confidence             11112334455566665543222 223444444443   56689999999986533221 112222221   1  3468


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029103          150 LETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      +++||++|.|++++++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.70  E-value=7.5e-17  Score=117.00  Aligned_cols=157  Identities=16%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHhCC--CCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (199)
                      .+..++|+++|+.++|||||+.+|+...  ...                           ......+.........+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3468899999999999999999995311  000                           00111111222222223334


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ...+.++|+|||..|..........+|++++|+|+.+...-      .+..+.+..+....  -.++++++||.|+....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~--i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--INHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--CSSEEEEEECTTSTTCS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC--CCeEEEEEEcCCCCccc
Confidence            46789999999999998888888999999999999864211      13334444443331  22378899999986432


Q ss_pred             cCC--H----HHHHHHHHHh-------CCcEEEeccCCCCCHHHHHH
Q 029103          132 KVK--N----EEGELYAQEN-------GLSFLETSAKSAHNVNELFY  165 (199)
Q Consensus       132 ~~~--~----~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ...  .    .+...+....       .++++++||++|+|+.++++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            111  0    1111121111       24789999999999977544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=1.3e-17  Score=119.79  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=94.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC--CCC---------------------------CCcCccceeEEEEEEEeCCeEE
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFD---------------------------FQESTIGAAFFTQVLSLNEVTI   59 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (199)
                      +.++|+++|+.++|||||+.+|+...  ...                           ......+.+.......+.....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            47999999999999999999986310  000                           0011122333333344455567


Q ss_pred             EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  133 (199)
                      .+.++|||||..|.......+.-+|++|+|+|+.+...      ..+..+.+......  ...++++++||.|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcccc
Confidence            89999999999999988888999999999999997532      12233333333333  23457888999998642111


Q ss_pred             C------HHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 029103          134 K------NEEGELYAQENG-----LSFLETSAKSAHNVNE  162 (199)
Q Consensus       134 ~------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      .      ..+...+...++     ++++++||..|+|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0      112233333333     4689999999998753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=8.8e-17  Score=117.83  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC--CCCC--------------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      -.+|+++|+.|+|||||+.+|+..  ....              ......+.+.......+.+.+.+++++||||+..|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            347999999999999999999751  1100              001111222223334445556789999999999999


Q ss_pred             ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      ......+.-+|+.|+|+|+.+.-.....+-| ....   ..+.|.++++||.|.
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr  135 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDK  135 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTS
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH---HcCCCEEEEEecccc
Confidence            9999999999999999999976544443334 4343   348899999999997

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=7.1e-17  Score=116.62  Aligned_cols=153  Identities=13%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh--CCCCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD---------------------------FQESTIGAAFFTQVLSLNEV   57 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (199)
                      ..+.++|+++|+.++|||||+.+|+.  +....                           ..+...+++.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            34679999999999999999999963  11100                           00111233333333344445


Q ss_pred             EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH-----H-HHHHHHHHHHHHhCCCCc-eEEEEEeCCCCccc
Q 029103           58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS-----F-ERAKKWVQELQRQGNPNL-IMFLVANKVDLEEK  130 (199)
Q Consensus        58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~  130 (199)
                      ..++.++|+|||..|...+...+..+|++|+|+|+.+..-     . .+....+......   ++ +++|++||.|+.+.
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCC
Confidence            5789999999999999888888999999999999986421     0 1233333333333   33 47889999998753


Q ss_pred             ccCC----HHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 029103          131 RKVK----NEEGELYAQENG-----LSFLETSAKSAHNVNE  162 (199)
Q Consensus       131 ~~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      .+..    ..+...+....+     ++++++|+..|+|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3211    122333444433     5689999999988643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.67  E-value=3.2e-16  Score=114.53  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCC-CCC-----c----------CccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQ-----E----------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS   74 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~-----~----------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~   74 (199)
                      .+|+|+|+.++|||||+++|+...-. +..     .          ...+.+.......+.+.+.++.++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            47999999999999999999642110 000     0          0112222333334444556789999999999998


Q ss_pred             cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      .....+.-+|++|+|+|+.+.-..... ..+....+.   +.|.++++||.|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhH-HHHHhhhhc---cccccccccccccc
Confidence            888889999999999999876444443 333444443   77899999999963

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.2e-14  Score=112.38  Aligned_cols=158  Identities=13%  Similarity=0.128  Sum_probs=91.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC---ccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-----cccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES---TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----PMYY   80 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-----~~~~   80 (199)
                      .+++|+|+|.+|||||||+|+|.|.........   ..+++........ .....+.+|||||........     ...+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            479999999999999999999998543322211   1111221112222 223347799999976443221     2235


Q ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHH-HHH-------HHHh
Q 029103           81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEG-ELY-------AQEN  145 (199)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~-~~~-------~~~~  145 (199)
                      ..+|.++++.|..-.  - .-..++..+...   +.|+++|.||+|....       ........ ..+       ....
T Consensus       134 ~~~d~~l~~~~~~~~--~-~d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFK--K-NDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCC--H-HHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCC--H-HHHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            677888888774321  1 223444555544   7889999999996310       11111111 111       1112


Q ss_pred             C---CcEEEeccCC--CCCHHHHHHHHHHHHHh
Q 029103          146 G---LSFLETSAKS--AHNVNELFYEIAKRLAE  173 (199)
Q Consensus       146 ~---~~~~~~s~~~--~~~v~~~~~~l~~~~~~  173 (199)
                      +   -+++.+|..+  ..++.++.+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            2   3578888765  34888888888777654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=9.9e-15  Score=106.58  Aligned_cols=124  Identities=11%  Similarity=0.080  Sum_probs=72.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-------cc--
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------AP--   77 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-------~~--   77 (199)
                      ..+++|+++|.+|||||||+|+|++........ +..+...........+  ..+.++||||.......       ..  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            458999999999999999999999876443221 1222222333333443  56889999996432211       11  


Q ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccC
Q 029103           78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKV  133 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~  133 (199)
                      ......+++++|++++...--......+..+....+  .-.+++||+||.|.......
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~  165 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL  165 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCC
Confidence            112356788999888653111111222333332222  23468999999998654433

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.1e-14  Score=109.69  Aligned_cols=115  Identities=20%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             ee-EEEEEcCCCCcHHHHHHHHHhC--CC--------------CCCCcCccceeEEEEEEEe--------------CCeE
Q 029103           10 QV-KLVLLGDMGTGKTSLVLRFVKG--QF--------------FDFQESTIGAAFFTQVLSL--------------NEVT   58 (199)
Q Consensus        10 ~~-~i~v~G~~~~GKSsL~~~l~~~--~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~   58 (199)
                      .+ +|+|+|+.++|||||+++|+..  ..              ..+..+..++......+..              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 6999999999999999999741  11              0111111222211222211              3456


Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE  128 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (199)
                      +.+.++|||||..|.......++-+|++++|+|+.++-..... ..+.....   .+.|.++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH---cCCCeEEEEECcccc
Confidence            7899999999999998888889999999999999976544443 33333333   478899999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.45  E-value=1.1e-13  Score=103.67  Aligned_cols=104  Identities=14%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG  138 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  138 (199)
                      +.+.+++|.|...-.   .....-+|..++|......+..+..+.-+-++        +-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~--------aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFEL--------ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHH--------CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhh--------hheeeEeccccccchHHHHHHH
Confidence            456677887754322   22345599999999998776555443222222        1389999999876443322222


Q ss_pred             HHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          139 ELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       139 ~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      ..+...          +..+++.+|+++++|+++++++|.++...
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            222222          34579999999999999999999887654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=3e-14  Score=102.92  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=65.1

Q ss_pred             EEEEEeCCCcccccccccc---c--ccCCCEEEEEEECC---CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           60 KFDIWDTAGQERYHSLAPM---Y--YRGAAAAVVVYDIT---SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      .+.++|+||+..+......   +  ....+.+++++|+.   ++...............  .-..|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccHH
Confidence            4778999998765432221   1  22456888999875   33332222111111111  1367789999999986533


Q ss_pred             cCCHHH---------H--------------HH---HHH--HhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103          132 KVKNEE---------G--------------EL---YAQ--ENGLSFLETSAKSAHNVNELFYEIAKRL  171 (199)
Q Consensus       132 ~~~~~~---------~--------------~~---~~~--~~~~~~~~~s~~~~~~v~~~~~~l~~~~  171 (199)
                      +.....         .              ..   ...  ...++++++||++|+|++++++.|.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            211100         0              00   001  1346899999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.3e-13  Score=103.54  Aligned_cols=101  Identities=20%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             EEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH
Q 029103           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL  140 (199)
Q Consensus        61 v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  140 (199)
                      +.+++|.|.....   ..+...+|.+++|.+....+..+..+..+-++        +-++|+||.|+....... .....
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~-~~~~~  216 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVA-IARHM  216 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHH-HHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHH-HHHHH
Confidence            4455555532211   12456789999999876555444433333222        127889999987533221 11111


Q ss_pred             HHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103          141 YAQ----------ENGLSFLETSAKSAHNVNELFYEIAKRLAE  173 (199)
Q Consensus       141 ~~~----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~  173 (199)
                      +..          .+..+++.+||.+|+|++++++.|.++...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHH
Confidence            111          233579999999999999999999876643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=1.9e-11  Score=89.88  Aligned_cols=84  Identities=18%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccc---
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQER---   71 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~---   71 (199)
                      .++|+++|.|+||||||+++|++........+..+.+.....+.+.+.               ...+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            579999999999999999999986644333233222222222333221               13588999999522   


Q ss_pred             -cccccc---ccccCCCEEEEEEECC
Q 029103           72 -YHSLAP---MYYRGAAAAVVVYDIT   93 (199)
Q Consensus        72 -~~~~~~---~~~~~~d~~i~v~d~~   93 (199)
                       -..+..   ..++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence             122333   3478999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=2.5e-10  Score=85.46  Aligned_cols=83  Identities=18%  Similarity=0.089  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc------ceeEEEEEEE----------------eCCeEEEEEEEeCCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI------GAAFFTQVLS----------------LNEVTIKFDIWDTAG   68 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~------~~~~~~~~~~----------------~~~~~~~v~l~d~~g   68 (199)
                      ++|+++|.|+||||||+|+|++........+..      ++........                .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999865432222222      2111111110                012346799999999


Q ss_pred             ccccc----ccc---cccccCCCEEEEEEECC
Q 029103           69 QERYH----SLA---PMYYRGAAAAVVVYDIT   93 (199)
Q Consensus        69 ~~~~~----~~~---~~~~~~~d~~i~v~d~~   93 (199)
                      .-...    .+.   -..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            53211    111   23357899999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.01  E-value=1.5e-09  Score=80.22  Aligned_cols=87  Identities=15%  Similarity=0.098  Sum_probs=57.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCC---------------eEEEEEEEeCCCccc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQER   71 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~l~d~~g~~~   71 (199)
                      ...++|+++|.|+||||||+++|++... .....+..+++.......+.+               ....+.+.|+||.-.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3578999999999999999999997643 222333333333333334333               124688999998542


Q ss_pred             cc----ccc---cccccCCCEEEEEEECCC
Q 029103           72 YH----SLA---PMYYRGAAAAVVVYDITS   94 (199)
Q Consensus        72 ~~----~~~---~~~~~~~d~~i~v~d~~~   94 (199)
                      -.    .+.   -..++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            22    222   233689999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.2e-09  Score=80.78  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEe----------------------------------
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSL----------------------------------   54 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~----------------------------------   54 (199)
                      ..+|+|+|..++|||||+|+|++..+.+. ..+............-                                  
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45799999999999999999998665322 2222111111111000                                  


Q ss_pred             ---------------CCeEEEEEEEeCCCccccc-------------ccccccccCCC-EEEEEEECCCHHHHHHHHHHH
Q 029103           55 ---------------NEVTIKFDIWDTAGQERYH-------------SLAPMYYRGAA-AAVVVYDITSMDSFERAKKWV  105 (199)
Q Consensus        55 ---------------~~~~~~v~l~d~~g~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~  105 (199)
                                     ......+.++|+||.....             .+...|+.+.+ ++++|.+............+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                           0001137799999964321             22344556666 555677666554444444554


Q ss_pred             HHHHHhCCCCceEEEEEeCCCCcccc
Q 029103          106 QELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus       106 ~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ..+   .....++++|+||.|..+..
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTT
T ss_pred             HHh---CcCCCceeeEEeccccccch
Confidence            444   34456799999999986543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.84  E-value=2.2e-09  Score=79.72  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             EEEEEeCCCcccc-------------cccccccccCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           60 KFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVY-DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        60 ~v~l~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      .+.++|+||....             ..+...|+.+++.+++++ +......-.....+...+   ......+++|+||.
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            3779999996432             134556788888766655 444322222223333333   33456799999999


Q ss_pred             CCcccc
Q 029103          126 DLEEKR  131 (199)
Q Consensus       126 D~~~~~  131 (199)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            986433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=7.3e-09  Score=75.63  Aligned_cols=59  Identities=19%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE   70 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~   70 (199)
                      ...++|+|+|.|+||||||+|+|.+.... ...+..+++.....+..+.   .+.++||||..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~-~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceE-EECCcccccccceEEECCC---CeEEecCCCcc
Confidence            45899999999999999999999975532 2445555555444444332   37799999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=2.9e-09  Score=74.89  Aligned_cols=60  Identities=20%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCCCCC------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQFFD------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      -..+++|++|||||||+|+|.+.....      .......++.....+.+.+..   .++||||..++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            356899999999999999998643211      112223344444455555443   388999976544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=7.6e-09  Score=72.98  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCCCCC------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQFFD------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH   73 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~   73 (199)
                      ..+++|++|||||||+|+|.+.....      .......+++....+..++ .   .++||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCcccccc
Confidence            46799999999999999998742211      1111122223333333444 2   378999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=3.1e-07  Score=64.37  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             cccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH--HhCCcEEEeccC
Q 029103           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ--ENGLSFLETSAK  155 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~  155 (199)
                      ...+.|.+++|+.+.+|+ +...+.+++-....   .+++.+||+||+|+.+....  .....+..  ..+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEeccc
Confidence            457899999999988764 34555555555544   47788999999999764322  12222222  334688999999


Q ss_pred             CCCCHHHHHHHH
Q 029103          156 SAHNVNELFYEI  167 (199)
Q Consensus       156 ~~~~v~~~~~~l  167 (199)
                      +++|++++...|
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999988765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.43  E-value=1.3e-06  Score=58.90  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=3.9e-06  Score=58.89  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|.|..|||||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3688999999999999999874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.31  E-value=9.5e-08  Score=66.43  Aligned_cols=84  Identities=15%  Similarity=0.070  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCccccccc----cccc--------ccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           59 IKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      ..+.++||+|...+...    +..+        ....+-.++|+|.+. .+.+......+..+    ..   --+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~~---~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----GL---TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----CC---SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----CC---ceEEEecc
Confidence            46789999996443321    1111        124567889999874 44455555544444    11   26789999


Q ss_pred             CCcccccCCHHHHHHHHHHhCCcEEEec
Q 029103          126 DLEEKRKVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      |.....-    .........++|+..++
T Consensus       162 Det~~~G----~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         162 DGTAKGG----VLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             TSSCCCT----THHHHHHHHCCCEEEEE
T ss_pred             CCCCCcc----HHHHHHHHHCCCEEEEe
Confidence            9643221    13445567788877666

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.31  E-value=5.6e-08  Score=67.78  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCcccccc------ccccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103           59 IKFDIWDTAGQERYHS------LAPMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE  129 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  129 (199)
                      ..+.|+||+|...+..      ....+  .-+.+-+++|++++.. +..+.....+..   .   ++ --+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~---~---~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA---S---KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH---C---TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc---c---Cc-ceEEEecccCCC
Confidence            4688999999644331      11111  2235678899998743 333333332221   1   11 357799999643


Q ss_pred             cccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103          130 KRKVKNEEGELYAQENGLSFLETSAKSAHNVNE  162 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                          ..=.........++|+..++  +|+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                23445666677889987777  4665543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=8e-08  Score=67.07  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCccccccc----cccc---c-----cCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           59 IKFDIWDTAGQERYHSL----APMY---Y-----RGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      +.+.|+||+|...++..    ...+   .     ...+-.++|+|.+.. +.+......+   ... .   +--+++||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~~-~---~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFK---EAV-N---VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHH---HHS-C---CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhc---ccc-C---CceEEEecc
Confidence            45789999995433211    1111   1     124678899998643 3333333332   222 1   236889999


Q ss_pred             CCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103          126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      |....    .=.+.......++|+..++  +|++++
T Consensus       167 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         167 DGTAK----GGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             GGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             cCCCc----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            95431    2234555667788887777  455553

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.5e-07  Score=65.55  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCcccccc----cc---ccccc-----CCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103           59 IKFDIWDTAGQERYHS----LA---PMYYR-----GAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKV  125 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~----~~---~~~~~-----~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  125 (199)
                      +.+.++||+|....+.    .+   .....     ..+-.++|+|.+. .+.+......+..+    .   +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----G---LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----C---CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----C---CceEEEeec
Confidence            4578999999543221    11   11122     2468889999874 33344443333322    1   236889999


Q ss_pred             CCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103          126 DLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN  161 (199)
Q Consensus       126 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      |....    .=.+.......++|+..++  .|++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            96432    2234455667788888777  555553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=5.9e-07  Score=63.15  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             cccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHHHHhCCcEEEeccC
Q 029103           79 YYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQENGLSFLETSAK  155 (199)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~  155 (199)
                      ...+.|.+++|+++.+|+ +...+.+++-...   ..+++.+||+||+|+.+..+...  ..........+++++.+|++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~---~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH---HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            457899999999988764 3455555554443   34778899999999975432211  11233445678999999999


Q ss_pred             CCCCHHHHHHHH
Q 029103          156 SAHNVNELFYEI  167 (199)
Q Consensus       156 ~~~~v~~~~~~l  167 (199)
                      +++|++++...|
T Consensus        84 ~~~gl~~L~~~l   95 (231)
T d1t9ha2          84 DQDSLADIIPHF   95 (231)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             ChhHHHHHHHhh
Confidence            999887776544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.03  E-value=1.7e-06  Score=58.03  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++.++|+|.|+|||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=4.9e-06  Score=60.22  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103           77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS  156 (199)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      ...+..+|+++.|+|+.+|.+...  ..+..+    ..+.|.++|+||+|+.+....  .....+....+...+.+|+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~----~~~Kp~IlVlNK~DLv~~~~~--~~w~~~f~~~~~~~i~isa~~   81 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI----LKNKPRIMLLNKADKADAAVT--QQWKEHFENQGIRSLSINSVN   81 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH----CSSSCEEEEEECGGGSCHHHH--HHHHHHHHTTTCCEEECCTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH----HcCCCeEEEEECccCCchHHH--HHHHHHHHhcCCccceeeccc
Confidence            446789999999999998865432  112222    136789999999999764322  222333344567899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 029103          157 AHNVNELFYEIAKRLAE  173 (199)
Q Consensus       157 ~~~v~~~~~~l~~~~~~  173 (199)
                      +.+..++...+.+.+.+
T Consensus        82 ~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          82 GQGLNQIVPASKEILQE   98 (273)
T ss_dssp             CTTGGGHHHHHHHHHHH
T ss_pred             CCCccccchhhhhhhhh
Confidence            99988887777666654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=2.1e-06  Score=58.01  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-+|+|.|++|+|||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999985

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=1.6e-06  Score=60.12  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCccccccc----cccc--ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103           59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR  131 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (199)
                      ..+.++||+|....+..    +..+  ..+.+-+++|.|.+... ..+....+++.+    ..   --+++||.|.... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~~---~~~I~TKlDe~~~-  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----GV---TGLVLTKLDGDAR-  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----CC---CEEEEECGGGCSS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----CC---CeeEEeecCcccc-
Confidence            46789999996443321    1111  23567889999987553 333333332222    11   2588999995331 


Q ss_pred             cCCHHHHHHHHHHhCCcEEEec
Q 029103          132 KVKNEEGELYAQENGLSFLETS  153 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                         .-.+.......+.|+..++
T Consensus       165 ---~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 ---GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ---CHHHHHHHHHHCCCEEEEC
T ss_pred             ---chHHHHHHHHHCCCEEEEe
Confidence               3334556667888887765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.86  E-value=3.3e-06  Score=56.34  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.+|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.1e-06  Score=55.26  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=6.6e-06  Score=55.54  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.79  E-value=6.6e-06  Score=53.78  Aligned_cols=21  Identities=24%  Similarity=0.543  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|+||||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.77  E-value=7.9e-06  Score=55.68  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.73  E-value=9.3e-06  Score=54.93  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999885

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=1e-05  Score=54.70  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.72  E-value=1.3e-05  Score=54.74  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -.-++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999986

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.71  E-value=1.5e-05  Score=53.34  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....+.|.++|.|||||||+.+.|..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44568899999999999999988874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.70  E-value=1.3e-05  Score=54.70  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +..|+|+|+|||||||+.+.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999975

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.70  E-value=7.7e-06  Score=55.69  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +++|+|+|+|||||||+.+.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.69  E-value=1.1e-05  Score=53.65  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -|+|.|+|||||||+++.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999853

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.3e-05  Score=54.16  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.2e-05  Score=54.21  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.1e-05  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.7e-05  Score=52.13  Aligned_cols=21  Identities=29%  Similarity=0.669  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=2e-05  Score=52.37  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=9.8e-06  Score=54.79  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+||+||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=2.1e-05  Score=54.11  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-|+++|.||||||||+++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.4e-05  Score=52.00  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.47  E-value=3e-05  Score=51.35  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+++|+|||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.46  E-value=4.8e-05  Score=54.34  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+..|++.|+||+|||||+..+.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.1e-05  Score=54.71  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +|+|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=5.5e-05  Score=50.65  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ...-|+++|.|||||||+++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355789999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.6e-05  Score=51.49  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999885

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3.6e-05  Score=51.05  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      =++|+|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4e-05  Score=51.97  Aligned_cols=21  Identities=33%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.1e-05  Score=53.39  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467788999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.43  E-value=4.1e-05  Score=51.39  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|.|++||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=6.2e-05  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..++-|+|.|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00011  Score=53.00  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcC--ccceeEEEEEEEe-CCeEEEEEEEeCCCcccc
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQES--TIGAAFFTQVLSL-NEVTIKFDIWDTAGQERY   72 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~   72 (199)
                      +-.-|.|+|+.++|||+|+|.|.+.... .....  ..+.....+.... .+....+.++||.|....
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            3557889999999999999999975532 11111  1111222222222 344567889999997543

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.40  E-value=4.1e-05  Score=50.92  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999998753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=4.7e-05  Score=51.36  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.7e-05  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      --|+|+|+|||||||+...|..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588899999999999999976

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.38  E-value=5e-05  Score=50.44  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999999863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.37  E-value=4.7e-05  Score=53.86  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=4.4e-05  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|+.|+|||||++.+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            3689999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=5.1e-05  Score=53.19  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4689999999999999998873

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.36  E-value=4.5e-05  Score=53.45  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999988753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=4.8e-05  Score=54.18  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|+|||||++.|.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.35  E-value=5.9e-05  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=18.1

Q ss_pred             eEEE-EEcCCCCcHHHHHHHHHh
Q 029103           11 VKLV-LLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~-v~G~~~~GKSsL~~~l~~   32 (199)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3565 569999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=5.4e-05  Score=51.56  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=6.1e-05  Score=52.96  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ++++|+.|+|||||++.+.+-
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCChHHHHHHHHHcC
Confidence            568999999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.32  E-value=0.00026  Score=46.40  Aligned_cols=26  Identities=35%  Similarity=0.598  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      +..-|++-|+-|||||||++.+...-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34568899999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.7e-05  Score=53.69  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999998763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=6.2e-05  Score=52.95  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.32  E-value=6.7e-05  Score=49.97  Aligned_cols=20  Identities=20%  Similarity=0.483  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=7.3e-05  Score=50.84  Aligned_cols=20  Identities=35%  Similarity=0.694  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=6.7e-05  Score=54.25  Aligned_cols=22  Identities=36%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .|+|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999999874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.28  E-value=5e-05  Score=53.12  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999998743

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.25  E-value=8e-05  Score=52.44  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998643

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.25  E-value=5.3e-05  Score=53.75  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+...|++.||||+|||+|++++...
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            34567999999999999999999753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=6.6e-05  Score=52.87  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=9e-05  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      =|+|+||+|||||||++.|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3689999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.20  E-value=0.0001  Score=50.09  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=24.6

Q ss_pred             CCCCceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ......++-|+|-|..||||||+++.|..
T Consensus         3 ~~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           3 YAEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34556678999999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.20  E-value=0.00012  Score=50.77  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+.|+|-|||||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999999886

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.0001  Score=51.74  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=7e-05  Score=52.60  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            368999999999999999987

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.18  E-value=9e-05  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00013  Score=49.60  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-+++++|+||||||++++.|...
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            347899999999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00014  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00011  Score=51.84  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998743

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.11  E-value=6.6e-05  Score=53.45  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+|+|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999998875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.11  E-value=0.00012  Score=52.20  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.10  E-value=6.9e-05  Score=52.80  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00016  Score=50.68  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..+++.||||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00014  Score=51.82  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ++++|+.|+|||||++.+.+-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00018  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-+++++|+||||||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            347899999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.05  E-value=9.4e-05  Score=54.55  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      .+|+|.|++|||||||+++|+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00022  Score=52.23  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|+++||||+|||.|++++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            456899999999999999999863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.00028  Score=49.12  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00041  Score=48.87  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.||||+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.89  E-value=0.00036  Score=49.43  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      ..-.++|.|+||+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00031  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|.|||||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467789999999999999886

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.85  E-value=0.00042  Score=47.67  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            8 NIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         8 ~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +...-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00053  Score=46.24  Aligned_cols=24  Identities=17%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999998865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00052  Score=50.00  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....++-|+|.|++|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345689999999999999999888764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.79  E-value=0.0003  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.383  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -+++.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999998863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00034  Score=53.73  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-+|+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999986

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.00052  Score=48.50  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.|++.|+||+|||+|++++..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.69  E-value=0.00045  Score=49.00  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00062  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.+++.||||+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            446999999999999999999853

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00058  Score=47.51  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999998863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0007  Score=48.10  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|++.||||+|||+|++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999999863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00063  Score=47.11  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4899999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.00097  Score=48.00  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=21.7

Q ss_pred             CCceeeEEEEEcCCCCcHHHHHHHHH
Q 029103            6 NKNIQVKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus         6 ~~~~~~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      .+..++=|+|.|++|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34557889999999999999987764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00069  Score=46.91  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00061  Score=47.84  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00091  Score=45.55  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.001  Score=47.49  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-.|++.|+||+|||+|++++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            457999999999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.35  E-value=0.00064  Score=51.17  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -+++++|+||||||++++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3569999999999999976654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.33  E-value=0.00089  Score=46.44  Aligned_cols=65  Identities=15%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcc
Q 029103           59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEE  129 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~  129 (199)
                      +.+.++|+++....  .....+..+|.++++... +..++....+....+.+.   +.|++ +|+|+.+..+
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT
T ss_pred             CCEEEEcccccccc--cchhhhhhhhcccccccc-cceecchhhHHHHHHhhh---hhhhhhhhhccccccc
Confidence            45778888875422  233446679999999985 466677776666666543   55654 8899998654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0014  Score=44.80  Aligned_cols=20  Identities=35%  Similarity=0.406  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.21  E-value=0.0044  Score=43.87  Aligned_cols=88  Identities=15%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCccccccc-ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCcccccCCH
Q 029103           59 IKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLI-MFLVANKVDLEEKRKVKN  135 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~  135 (199)
                      +.+.++|+|+....... .......+|.++++... +..++.........+..... .+.+ .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            45778888764332222 12223457888777765 56666666666555555432 2333 3478899886442    3


Q ss_pred             HHHHHHHHHhCCcEEE
Q 029103          136 EEGELYAQENGLSFLE  151 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~~  151 (199)
                      ...+.+.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4456667777766543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.16  E-value=0.0021  Score=42.71  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ..-|++.|++|+||||+.-.|....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3568999999999999999888644

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0025  Score=46.54  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.++++||+|+|||.|++.|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            44689999999999999999876

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0027  Score=43.37  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +-|+|.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            55889999999999999988653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.07  E-value=0.00079  Score=49.58  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.0018  Score=48.25  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +.-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456799999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.04  E-value=0.0022  Score=42.63  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ..-|++.|++|+|||||.-.|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3568999999999999999887543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.003  Score=42.99  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHh
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0044  Score=41.89  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -+.|.|+||+|||+|+..+..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999998887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0022  Score=43.90  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998888754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.90  E-value=0.003  Score=41.71  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      ..-|++.|++|+||||+.-.|....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            4578999999999999998887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.87  E-value=0.0025  Score=47.50  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.+++.||||+|||+|...+.+
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999886

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0015  Score=45.42  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.72  E-value=0.0013  Score=47.26  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999998754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.00061  Score=45.95  Aligned_cols=19  Identities=37%  Similarity=0.622  Sum_probs=16.8

Q ss_pred             EEEcCCCCcHHHHHHHHHh
Q 029103           14 VLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~   32 (199)
                      +|+|+.|+|||||++++.-
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.003  Score=43.74  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -++|.|+||+|||+|+..+..+
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999888654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.56  E-value=0.0043  Score=45.28  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +++.|+||+|||.|++.|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344799999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.56  E-value=0.0043  Score=45.53  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-++|.|=|+-|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            468999999999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.54  E-value=0.004  Score=44.47  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-|+|.|..|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.53  E-value=0.0031  Score=46.30  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-++|.|=|+-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0041  Score=43.15  Aligned_cols=21  Identities=29%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|-|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478889999999999999875

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.49  E-value=0.0097  Score=42.52  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             EEEEEEeCCCccccccccccc-ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceE-EEEEeCCCCcccccCCH
Q 029103           59 IKFDIWDTAGQERYHSLAPMY-YRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIM-FLVANKVDLEEKRKVKN  135 (199)
Q Consensus        59 ~~v~l~d~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ivv~nK~D~~~~~~~~~  135 (199)
                      +.+.++|+|+........... ...++.++++.. .+..++..+...+..+.... ..+.++ .++.|+.+....    .
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----D  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----H
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----H
Confidence            456788887653222221111 234566666654 45666666666555554432 344444 378898874322    3


Q ss_pred             HHHHHHHHHhCCcEEEeccC---------CC---------CCHHHHHHHHHHHHHhhC
Q 029103          136 EEGELYAQENGLSFLETSAK---------SA---------HNVNELFYEIAKRLAEVN  175 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~---------~~---------~~v~~~~~~l~~~~~~~~  175 (199)
                      .....+....+.+++.+-..         .|         ....+.|..|.+.+.++.
T Consensus       194 ~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~  251 (289)
T d2afhe1         194 ELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNK  251 (289)
T ss_dssp             HHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCC
Confidence            34556666677665432111         11         224456777788877754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.48  E-value=0.004  Score=43.37  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|.|+||+|||+|.-.+..+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999988776543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0054  Score=41.81  Aligned_cols=21  Identities=19%  Similarity=0.399  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998776

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.33  E-value=0.0048  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-++|.|-|+-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            357899999999999999998863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.32  E-value=0.0051  Score=46.41  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      |+|.|+.||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999998743

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.30  E-value=0.0051  Score=42.63  Aligned_cols=23  Identities=48%  Similarity=0.667  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHhC
Q 029103           11 VKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      --++|.|+||+|||+|+..+..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34689999999999999888765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.28  E-value=0.098  Score=35.45  Aligned_cols=83  Identities=12%  Similarity=0.044  Sum_probs=48.7

Q ss_pred             EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 029103           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE  139 (199)
Q Consensus        60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  139 (199)
                      .+.++|+|+....  .....+..+|.+++|... +..++......+........  ..+-+|+|+.+...    ......
T Consensus       111 D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~-~~~~~~~~~~~~~~~~~~~~--~~~~iv~N~~~~~~----~~~~~~  181 (232)
T d1hyqa_         111 DILLLDAPAGLER--SAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERLGT--KVLGVVVNRITTLG----IEMAKN  181 (232)
T ss_dssp             SEEEEECCSSSSH--HHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHHTC--EEEEEEEEEECTTT----HHHHHH
T ss_pred             ceeeecccccccc--hhHHHhhhhheeeeeccc-cccchhhhhhhhhhhhhccc--cccccccccccccc----ccchhh
Confidence            4678888775422  223345679999999875 45556665555555544422  23457889987432    123345


Q ss_pred             HHHHHhCCcEEE
Q 029103          140 LYAQENGLSFLE  151 (199)
Q Consensus       140 ~~~~~~~~~~~~  151 (199)
                      .+.+..+.+++.
T Consensus       182 ~i~~~~~~~~~~  193 (232)
T d1hyqa_         182 EIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHTTSCEEE
T ss_pred             hHHhhcCCeEEE
Confidence            566667776553

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.0034  Score=45.23  Aligned_cols=19  Identities=21%  Similarity=0.454  Sum_probs=16.9

Q ss_pred             EEEcCCCCcHHHHHHHHHh
Q 029103           14 VLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        14 ~v~G~~~~GKSsL~~~l~~   32 (199)
                      +++|+.|+||||+++++.-
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            7899999999999998843

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.19  E-value=0.0064  Score=41.65  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhC
Q 029103           13 LVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0064  Score=42.29  Aligned_cols=21  Identities=33%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0055  Score=45.97  Aligned_cols=21  Identities=19%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHH
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFV   31 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~   31 (199)
                      .++ +|+|+.|+|||++++++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            354 588999999999999974

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.007  Score=41.41  Aligned_cols=20  Identities=30%  Similarity=0.278  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |++-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.018  Score=39.80  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|.|+||+|||+|.-.+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.97  E-value=0.0082  Score=41.62  Aligned_cols=21  Identities=19%  Similarity=0.178  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.96  E-value=0.01  Score=43.15  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.++++|++|+|||.|++.|..
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHH
Confidence            33678889999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.96  E-value=0.0072  Score=41.73  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      -++|.|+||+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999998887643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.83  E-value=0.0086  Score=42.41  Aligned_cols=20  Identities=20%  Similarity=0.383  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999888764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.012  Score=36.30  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=22.9

Q ss_pred             CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            7 KNIQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         7 ~~~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .++-+.|.+-|.+|+|||+|.++|..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            35678999999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.56  E-value=0.01  Score=40.55  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -++|.|+||+|||+|+..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999876653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.53  E-value=0.0092  Score=40.30  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      .-.+++.|+++.|||.|+.+|+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            35688999999999999999876

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.011  Score=44.63  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      .-+++|+|.+|+|||+++..+..+
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            346899999999999998877653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.013  Score=41.24  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999877654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.99  E-value=0.011  Score=42.28  Aligned_cols=17  Identities=29%  Similarity=0.544  Sum_probs=13.9

Q ss_pred             EEEEcCCCCcHHHH-HHH
Q 029103           13 LVLLGDMGTGKTSL-VLR   29 (199)
Q Consensus        13 i~v~G~~~~GKSsL-~~~   29 (199)
                      ++|+|+||+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68999999999976 443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.86  E-value=0.013  Score=42.22  Aligned_cols=15  Identities=33%  Similarity=0.780  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 029103           13 LVLLGDMGTGKTSLV   27 (199)
Q Consensus        13 i~v~G~~~~GKSsL~   27 (199)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.023  Score=40.56  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.44  E-value=0.035  Score=39.20  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            456788999999999999999876

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.042  Score=40.53  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 029103           12 KLVLLGDMGTGKTSLVLRF   30 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l   30 (199)
                      -++|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999987553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.18  E-value=0.045  Score=38.13  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHh
Q 029103           10 QVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        10 ~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..-|+|.|++|+||+.+++.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999999865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.059  Score=37.90  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      -+.|.|++|+|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3578999999999998877754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.95  E-value=0.085  Score=37.30  Aligned_cols=22  Identities=36%  Similarity=0.745  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |++|+|.+|+|||+|+-.+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6899999999999998888754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.39  E-value=0.53  Score=29.81  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=29.7

Q ss_pred             ccccCCCEEEEEEECCCH---HH-------HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103           78 MYYRGAAAAVVVYDITSM---DS-------FERAKKWVQELQRQGNPNLIMFLVANKVDL  127 (199)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~---~s-------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (199)
                      ..++++|++|+.......   ..       ..-++.+.+.+.++..++.-++++.|-+|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            457889999998765521   11       233344555566665555556666676663

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.96  E-value=1.2  Score=28.80  Aligned_cols=101  Identities=11%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             ceeeEEEEEcC-CCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------c----
Q 029103            8 NIQVKLVLLGD-MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------H----   73 (199)
Q Consensus         8 ~~~~~i~v~G~-~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~----   73 (199)
                      ...+||.|+|. .++|-+ |+-.|..+.....                 ...+.+.+.|.+.....         .    
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhcccccc
Confidence            45889999997 667755 5555655543221                 22345667777652110         0    


Q ss_pred             --------ccccccccCCCEEEEEEECCCH---HHH-------HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           74 --------SLAPMYYRGAAAAVVVYDITSM---DSF-------ERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        74 --------~~~~~~~~~~d~~i~v~d~~~~---~s~-------~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                              ......+.++|++|++-.....   ...       .-++.+.+.+.++..++.-++++.|-+|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    1113347888999988765421   111       1223444556666555666777777666

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.03  E-value=0.11  Score=34.18  Aligned_cols=20  Identities=15%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      |+|+|...||||.+...+..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.15  Score=35.04  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68899999999999998654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.42  E-value=0.17  Score=31.76  Aligned_cols=18  Identities=39%  Similarity=0.560  Sum_probs=14.4

Q ss_pred             EEEcCCCCcHHH-HHHHHH
Q 029103           14 VLLGDMGTGKTS-LVLRFV   31 (199)
Q Consensus        14 ~v~G~~~~GKSs-L~~~l~   31 (199)
                      +++||-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            578999999999 566654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.21  E-value=0.17  Score=33.76  Aligned_cols=24  Identities=8%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103            9 IQVKLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus         9 ~~~~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998876

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.18  E-value=0.16  Score=34.63  Aligned_cols=20  Identities=15%  Similarity=0.295  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHh
Q 029103           13 LVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        13 i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ++|.|+..+||||+++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.13  E-value=0.12  Score=32.01  Aligned_cols=21  Identities=24%  Similarity=0.191  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      ..+|.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            347789999999998765443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.75  E-value=0.22  Score=34.93  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 029103           12 KLVLLGDMGTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~   32 (199)
                      -+.+.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            357899999999999877664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.45  E-value=0.16  Score=36.06  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            6799999999999998766643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.41  E-value=0.22  Score=34.91  Aligned_cols=38  Identities=26%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEeCCC
Q 029103           85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVD  126 (199)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  126 (199)
                      .+++|... ++.++....+.+..+....   .|+ -+|+|++-
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~g---i~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAIG---LKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHHT---CCCEEEEEEEEC
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhcC---CCceEEEEcCCc
Confidence            55666554 4567777788888877663   333 57779974

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.22  E-value=0.24  Score=34.80  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKG   33 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~   33 (199)
                      =+.+.|++++|||+|...++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3578999999999999887754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=0.16  Score=36.39  Aligned_cols=14  Identities=57%  Similarity=0.821  Sum_probs=13.0

Q ss_pred             EEEcCCCCcHHHHH
Q 029103           14 VLLGDMGTGKTSLV   27 (199)
Q Consensus        14 ~v~G~~~~GKSsL~   27 (199)
                      ++.|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999976

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.11  E-value=0.28  Score=32.60  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=17.2

Q ss_pred             EEEEEcCC-CCcHHHHHHHHHh
Q 029103           12 KLVLLGDM-GTGKTSLVLRFVK   32 (199)
Q Consensus        12 ~i~v~G~~-~~GKSsL~~~l~~   32 (199)
                      |+.|.|.. ||||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            68899995 9999999766654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=0.27  Score=34.27  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 029103           12 KLVLLGDMGTGKTSLVLRF   30 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l   30 (199)
                      =|++.|.-||||||+.-.|
T Consensus        22 iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          22 LIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3455699999999975444

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.22  E-value=0.18  Score=36.25  Aligned_cols=15  Identities=53%  Similarity=0.740  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 029103           13 LVLLGDMGTGKTSLV   27 (199)
Q Consensus        13 i~v~G~~~~GKSsL~   27 (199)
                      -++.|.+|.|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.18  E-value=0.21  Score=35.21  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhCC
Q 029103           12 KLVLLGDMGTGKTSLVLRFVKGQ   34 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~~~l~~~~   34 (199)
                      |++|+|.+|+|||+|+..+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            57899999999999987655443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.56  E-value=0.22  Score=35.85  Aligned_cols=14  Identities=57%  Similarity=0.821  Sum_probs=13.1

Q ss_pred             EEEcCCCCcHHHHH
Q 029103           14 VLLGDMGTGKTSLV   27 (199)
Q Consensus        14 ~v~G~~~~GKSsL~   27 (199)
                      ++.|.+|.|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999997

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.68  E-value=0.47  Score=31.06  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=13.3

Q ss_pred             EEEEEcCCCCcHHHHH
Q 029103           12 KLVLLGDMGTGKTSLV   27 (199)
Q Consensus        12 ~i~v~G~~~~GKSsL~   27 (199)
                      ++++.+++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4789999999999743

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.58  E-value=0.21  Score=30.42  Aligned_cols=16  Identities=38%  Similarity=0.287  Sum_probs=12.9

Q ss_pred             eEEEEEcCCCCcHHHH
Q 029103           11 VKLVLLGDMGTGKTSL   26 (199)
Q Consensus        11 ~~i~v~G~~~~GKSsL   26 (199)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4568889999999944

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.24  E-value=1.2  Score=28.08  Aligned_cols=24  Identities=13%  Similarity=0.194  Sum_probs=17.4

Q ss_pred             eeeEEEEEcC-CCCcHHHHHHHHHhC
Q 029103            9 IQVKLVLLGD-MGTGKTSLVLRFVKG   33 (199)
Q Consensus         9 ~~~~i~v~G~-~~~GKSsL~~~l~~~   33 (199)
                      .++||.|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            4689999996 788887665 44433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.48  E-value=4.6  Score=24.92  Aligned_cols=91  Identities=18%  Similarity=0.324  Sum_probs=49.9

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc------c----c--------
Q 029103           12 KLVLLGD-MGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE------R----Y--------   72 (199)
Q Consensus        12 ~i~v~G~-~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~------~----~--------   72 (199)
                      ||.|+|. -.+| +++...|.......                      .+.++|+....      .    +        
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~~~----------------------elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~   58 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPLVS----------------------RLTLYDIAHTPGVAADLSHIETRATVKGYLG   58 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTTCS----------------------EEEEEESSSHHHHHHHHTTSSSSCEEEEEES
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCccc----------------------eEEEEeccccchhhHHHhhhhhhcCCCeEEc
Confidence            8999995 8999 66677776443221                      24455654310      0    0        


Q ss_pred             cccccccccCCCEEEEEEECCC-----H-HH----HHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103           73 HSLAPMYYRGAAAAVVVYDITS-----M-DS----FERAKKWVQELQRQGNPNLIMFLVANKVD  126 (199)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~-----~-~s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  126 (199)
                      ...+...++++|++++......     + +-    ..-++.+.+.+.++ .++.-++++.|=+|
T Consensus        59 ~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD  121 (144)
T d1mlda1          59 PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN  121 (144)
T ss_dssp             GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred             CCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence            0112334678998888765431     1 11    23334455556666 45656666666665