Citrus Sinensis ID: 029105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKTEVS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEccccccccccccHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mkltwnknkgnkkrslqqfpnlpfdqqdqehglsgaeleknddnnehqepfdaKQLALSFEAQGNNLAEDGKFREALGKWEAAlnlrpenavlHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRaqlnfgepdKAIESFERAlaikpdseearDDRQTALHLVKRRKHlhlsglsndanrfvvgdktevs
Flexible Loop (DISEMBL)
mkltwnknkgnkkrslQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAlaikpdseearDDRQTALHLVKRrkhlhlsglsndanrfvvgdktevs
Low Complexity Region (SEG)
MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAlhlvkrrkhlhlSGLSNDANRFVVGDKTEVS
Disordered region (IsUnstruct)
***********************************************************************KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE***********************************************************
Disordered Region (DISOPRED)
MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD*****
Disordered Region (DISEMBL)
************KRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD********QTALHLVKRRKHLHLSGLSNDANRFVVGDKTEVS
Disordered Region (DISPRO)
MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKTEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q6DI40	268	Tetratricopeptide repeat	yes	no	0.472	0.350	0.5	1e-17
Q5M990	258	Tetratricopeptide repeat	N/A	no	0.492	0.379	0.469	3e-16
Q6PID6	262	Tetratricopeptide repeat	yes	no	0.467	0.354	0.484	3e-15
Q9D6K7	262	Tetratricopeptide repeat	yes	no	0.537	0.408	0.458	3e-15
Q43468	569	Heat shock protein STI OS	no	no	0.633	0.221	0.307	5e-08
Q9QYI3	494	DnaJ homolog subfamily C	no	no	0.517	0.208	0.320	9e-08
O43049	473	Serine/threonine-protein	yes	no	0.592	0.249	0.271	1e-07
P56558	1036	UDP-N-acetylglucosamine--	no	no	0.567	0.109	0.307	2e-07
P81436	1046	UDP-N-acetylglucosamine--	no	no	0.567	0.108	0.307	2e-07
O15294	1046	UDP-N-acetylglucosamine--	no	no	0.567	0.108	0.307	2e-07

>sp|Q6DI40|TTC33_DANRE Tetratricopeptide repeat protein 33 OS=Danio rerio GN=ttc33 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G  LAE  +  EAL KW+ A+ L PE+AVL+E K+QVL+ LG+ + A+++A  AT L  
Sbjct: 66  EGALLAEQDRNWEALKKWDEAVQLTPEDAVLYEMKSQVLITLGEVFLAVQSAEMATRLRP 125

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
            W EAW TLGRAQL+ GE + A+ SF+ AL + P
Sbjct: 126 IWWEAWQTLGRAQLSLGEVELAVRSFQVALHLHP 159

Danio rerio (taxid: 7955)

>sp|Q5M990|TTC33_XENLA Tetratricopeptide repeat protein 33 OS=Xenopus laevis GN=ttc33 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 64/98 (65%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G  LAEDG+ +EAL KW+ A+ L P +A L+E KAQVL+ + + + A++AA  A +   
Sbjct: 65  EGGLLAEDGRQKEALTKWDEAIQLTPGDAALYEMKAQVLMGVHEIFPAVQAAETAVQRNP 124

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
            + EAW TLGRAQL+ GE   AI SF+  L I P + E
Sbjct: 125 HFVEAWQTLGRAQLSLGEITMAIRSFQIGLHICPANTE 162

Xenopus laevis (taxid: 8355)

>sp|Q6PID6|TTC33_HUMAN Tetratricopeptide repeat protein 33 OS=Homo sapiens GN=TTC33 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 63/95 (66%), Gaps = 2/95 (2%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-E 121
           +G +LAE+ ++REA+ KW+ AL L P +A L+E K+QVL+ L + + A+ AA  A +   
Sbjct: 65  EGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNP 124

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
            SW E+W TLGRAQL  GE   AI SF+ AL I P
Sbjct: 125 HSW-ESWQTLGRAQLGLGEIILAIRSFQVALHIYP 158

Homo sapiens (taxid: 9606)

>sp|Q9D6K7|TTC33_MOUSE Tetratricopeptide repeat protein 33 OS=Mus musculus GN=Ttc33 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 53  AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112
            KQ +   + +G  LAE+ +++EA+ KW+ AL L P +A L+E K+QVLL L + + A+ 
Sbjct: 55  CKQRSQQLKDEGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVH 114

Query: 113 AATRATEL-EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
           AA  A +    SW EAW TLGRAQL  GE   AI SF+ AL I P + E
Sbjct: 115 AAEMAVKRNPHSW-EAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMNPE 162

Mus musculus (taxid: 10090)

>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 37  ELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ 96
           E EK     E QE FD K LA     +GN L +  K+ EA   +  A+   P++A  +  
Sbjct: 362 EAEKAKKELEQQEYFDPK-LADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSN 420

Query: 97  KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
           +A    +LG     LK A +  EL+ ++++ +   G  Q +  E DKA+E++   L   P
Sbjct: 421 RAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDP 480

Query: 157 DSEEARD 163
           +++E  D
Sbjct: 481 NNQELLD 487

Glycine max (taxid: 3847)

>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%)

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111
           DAK+ A SF+ QGN       + EA   +  A+++ P NA  +  +A  L+ LG    AL
Sbjct: 23  DAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREAL 82

Query: 112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
             A ++  L+ S+    +  G+  L+ G    A  SF+RAL +
Sbjct: 83  GDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL 125

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm.

Mus musculus (taxid: 10090)

>sp|O43049|PPT1_SCHPO Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppt1 PE=3 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           AL  + + N   ++G   +A+  +  A+ L   NA+L+  ++   L+  D   A+  A++
Sbjct: 5   ALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASK 64

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           A E +  +A+A+     A +   +P +A+  F +ALA+ P    AR   +    LVKR
Sbjct: 65  AIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKR 122

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90. Dephosphorylation positively regulates the Hsp90 chaperone machinery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 60  FEAQGNNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           F A  +NLA    + GK +EAL  ++ A+ + P  A  +      L E+ D   AL+  T
Sbjct: 350 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 409

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
           RA ++  ++A+A   L     + G   +AI S+  AL +KPD  +A  +    L +V
Sbjct: 410 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 466

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 60  FEAQGNNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           F A  +NLA    + GK +EAL  ++ A+ + P  A  +      L E+ D   AL+  T
Sbjct: 360 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 419

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
           RA ++  ++A+A   L     + G   +AI S+  AL +KPD  +A  +    L +V
Sbjct: 420 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 476

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 60  FEAQGNNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           F A  +NLA    + GK +EAL  ++ A+ + P  A  +      L E+ D   AL+  T
Sbjct: 360 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 419

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
           RA ++  ++A+A   L     + G   +AI S+  AL +KPD  +A  +    L +V
Sbjct: 420 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 476

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
255558526	216	conserved hypothetical protein [Ricinus	0.994	0.916	0.694	5e-71
359492242	205	PREDICTED: tetratricopeptide repeat prot	0.984	0.956	0.658	1e-65
224062978	216	predicted protein [Populus trichocarpa]	0.954	0.879	0.617	5e-64
449463430	215	PREDICTED: tetratricopeptide repeat prot	0.974	0.902	0.636	2e-63
449499089	215	PREDICTED: tetratricopeptide repeat prot	0.974	0.902	0.631	6e-63
302141751	168	unnamed protein product [Vitis vinifera]	0.718	0.851	0.811	2e-59
297839583	214	hypothetical protein ARALYDRAFT_316635 [	0.979	0.911	0.602	1e-58
351725651	192	uncharacterized protein LOC100305761 [Gl	0.949	0.984	0.611	4e-57
334183964	218	tetratricopeptide repeat-containing prot	0.979	0.894	0.572	5e-56
3540197	237	Unknown protein [Arabidopsis thaliana]	0.979	0.822	0.525	6e-53

>gi|255558526|ref|XP_002520288.1| conserved hypothetical protein [Ricinus communis] gi|223540507|gb|EEF42074.1| conserved hypothetical protein [Ricinus communis]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 161/203 (79%), Gaps = 5/203 (2%)

Query: 1   MKLTWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQ-EPFDA---KQL 56
           MK+ W K+   KKR+L ++PNLPFDQ+DQE   S  E+  N      Q EP D+   KQL
Sbjct: 15  MKVIWKKDNKTKKRTLSKYPNLPFDQEDQERE-SLNEITTNQQGFASQDEPLDSQSEKQL 73

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           A SF++QGN LAEDGK+REALGKWEAALNL P + VLHEQKAQVLLE+GDAWNALKAATR
Sbjct: 74  AESFQSQGNKLAEDGKYREALGKWEAALNLMPGSTVLHEQKAQVLLEIGDAWNALKAATR 133

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           ATELE SWAEAWITLGR QLNFGEPD AIESF+RALA+KPD +EA+DDR  ALHLVKRRK
Sbjct: 134 ATELEPSWAEAWITLGRTQLNFGEPDSAIESFDRALALKPDVKEAQDDRHAALHLVKRRK 193

Query: 177 HLHLSGLSNDANRFVVGDKTEVS 199
            LH SGLS + +RF+V DK E S
Sbjct: 194 QLHSSGLSANESRFMVADKAESS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492242|ref|XP_002284637.2| PREDICTED: tetratricopeptide repeat protein 33-like [Vitis vinifera]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/205 (65%), Positives = 159/205 (77%), Gaps = 9/205 (4%)

Query: 1   MKLTWNK-NKG-NKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNN-------EHQEPF 51
           MK+TW K +KG N+KRSL    NLPF+ ++ E   S  E +  ++ +       +  +  
Sbjct: 1   MKITWKKQSKGSNRKRSLAASSNLPFEDEEAEQPTSTMEAKVEEEGDFRGLKTLDSSDGP 60

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111
             +QLA SF+AQG+ LAE GK+REALGKWE AL L P  AVLHEQKAQVLLE+GDAWNAL
Sbjct: 61  STQQLADSFQAQGDKLAEGGKYREALGKWETALTLMPGKAVLHEQKAQVLLEIGDAWNAL 120

Query: 112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
           KAATRATELE SWAEAWITLGRAQLNFGEPD AI+SF+RALAIKP+SEEA+DDR++A HL
Sbjct: 121 KAATRATELEPSWAEAWITLGRAQLNFGEPDIAIKSFDRALAIKPNSEEAQDDRKSAFHL 180

Query: 172 VKRRKHLHLSGLSNDANRFVVGDKT 196
           VKRRK LH SGLS+  NRFVVGDKT
Sbjct: 181 VKRRKQLHSSGLSDTENRFVVGDKT 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062978|ref|XP_002300958.1| predicted protein [Populus trichocarpa] gi|222842684|gb|EEE80231.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/225 (61%), Positives = 158/225 (70%), Gaps = 35/225 (15%)

Query: 1   MKLTWNKNKGNKKRSL---QQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDA---- 53
           MK+TW K   +KKR L    ++PNLPFDQQD  H         ++DNN H +   A    
Sbjct: 1   MKVTWKKE--SKKRPLAAISKYPNLPFDQQDMIHN-------DDEDNNSHTKQLGASHKS 51

Query: 54  -------KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
                  +QLA SF+  GN LAEDGK+REALGKWEAALNL P NAVLHEQKAQVLLE+GD
Sbjct: 52  LDSEASNRQLADSFQDLGNKLAEDGKYREALGKWEAALNLMPGNAVLHEQKAQVLLEIGD 111

Query: 107 AWNALKAATR------------ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
            W+ALKAATR            ATELE SWAEAWITLGRAQLNFGEPD AIESF++ALAI
Sbjct: 112 PWSALKAATRENLNLLWNLLTGATELESSWAEAWITLGRAQLNFGEPDSAIESFDKALAI 171

Query: 155 KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKTEVS 199
           KPDS+EA+ DR  AL LVK+RK LH SGLS+  NR+VV DKTE S
Sbjct: 172 KPDSKEAQGDRHGALQLVKKRKQLHSSGLSSKENRYVVSDKTESS 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463430|ref|XP_004149437.1| PREDICTED: tetratricopeptide repeat protein 33-like [Cucumis sativus]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/209 (63%), Positives = 160/209 (76%), Gaps = 15/209 (7%)

Query: 1   MKLTWNKNKGN-KKRSLQQFP---NLPFD-----QQD-----QEHGLSGAELEKNDDNNE 46
           MKLTW KNKGN KKRSL       NLPF+     ++D     Q   ++   +++++D   
Sbjct: 1   MKLTW-KNKGNSKKRSLTTISTRSNLPFEVPGVVEEDDRANPQVKEVTAQPVDRSEDEAS 59

Query: 47  HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
            +   D K+LA SF+AQGN LAE GKFREALGKWE AL L PENAVLHEQKAQVLLE+G+
Sbjct: 60  DRSLSDLKRLAESFQAQGNTLAEGGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGE 119

Query: 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
           AW ALKAATRAT+L+ SWAEAWITLGRAQLNFGEPD AIESF+RALAIKPDS + +DDRQ
Sbjct: 120 AWGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDVQDDRQ 179

Query: 167 TALHLVKRRKHLHLSGLSNDANRFVVGDK 195
           TA+ L+KRRK LH +GLS+  NR++VG+K
Sbjct: 180 TAMRLIKRRKQLHSAGLSSSKNRYLVGEK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499089|ref|XP_004160718.1| PREDICTED: tetratricopeptide repeat protein 33-like [Cucumis sativus]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 132/209 (63%), Positives = 160/209 (76%), Gaps = 15/209 (7%)

Query: 1   MKLTWNKNKGN-KKRSLQQFP---NLPFD-----QQD-----QEHGLSGAELEKNDDNNE 46
           MKLTW KNKGN KKRSL       NLPF+     ++D     Q   ++   +++++D   
Sbjct: 1   MKLTW-KNKGNSKKRSLTTISTRSNLPFEVPGVVEEDDRANPQVKEVTAQPVDRSEDEAS 59

Query: 47  HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
            +   D K+LA SF+AQG+ LAE GKFREALGKWE AL L PENAVLHEQKAQVLLE+G+
Sbjct: 60  DRSLSDLKRLAESFQAQGDTLAEGGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGE 119

Query: 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
           AW ALKAATRAT+L+ SWAEAWITLGRAQLNFGEPD AIESF+RALAIKPDS + +DDRQ
Sbjct: 120 AWGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDVQDDRQ 179

Query: 167 TALHLVKRRKHLHLSGLSNDANRFVVGDK 195
           TA+ L+KRRK LH +GLS+  NR++VG+K
Sbjct: 180 TAMRLIKRRKQLHSAGLSSSKNRYLVGEK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141751|emb|CBI18954.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 128/143 (89%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
           +QLA SF+AQG+ LAE GK+REALGKWE AL L P  AVLHEQKAQVLLE+GDAWNALKA
Sbjct: 26  QQLADSFQAQGDKLAEGGKYREALGKWETALTLMPGKAVLHEQKAQVLLEIGDAWNALKA 85

Query: 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173
           ATRATELE SWAEAWITLGRAQLNFGEPD AI+SF+RALAIKP+SEEA+DDR++A HLVK
Sbjct: 86  ATRATELEPSWAEAWITLGRAQLNFGEPDIAIKSFDRALAIKPNSEEAQDDRKSAFHLVK 145

Query: 174 RRKHLHLSGLSNDANRFVVGDKT 196
           RRK LH SGLS+  NRFVVGDKT
Sbjct: 146 RRKQLHSSGLSDTENRFVVGDKT 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839583|ref|XP_002887673.1| hypothetical protein ARALYDRAFT_316635 [Arabidopsis lyrata subsp. lyrata] gi|297333514|gb|EFH63932.1| hypothetical protein ARALYDRAFT_316635 [Arabidopsis lyrata subsp. lyrata]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 151/209 (72%), Gaps = 14/209 (6%)

Query: 1   MKLTWNKNKGNKKR-SLQQFPNLPFDQQDQEHGLSGAELEKND----------DNNEH-Q 48
           MKLTWNKN   + R +L  FP+LPF++ D     S  +  ++D          D+++H +
Sbjct: 1   MKLTWNKNPKKRSRVALSNFPDLPFEKDDAPESQSHRQFREDDIGRRQITDQLDSSDHPR 60

Query: 49  EPFD--AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
           E FD  AK LA S  AQG+ LAE+GK++EALGKWEAALNL PE+AVLHEQKAQVLLELGD
Sbjct: 61  EKFDLEAKDLAESIRAQGDKLAEEGKYQEALGKWEAALNLVPEDAVLHEQKAQVLLELGD 120

Query: 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
           AW ALKAATRATE++ SWAEAW TLGRAQLNFGEPD AI SFE AL+I  DS EA DD +
Sbjct: 121 AWKALKAATRATEIDPSWAEAWTTLGRAQLNFGEPDSAIRSFESALSINGDSREANDDLK 180

Query: 167 TALHLVKRRKHLHLSGLSNDANRFVVGDK 195
           TA  L+K+R+ L  SG   +  RFVVGDK
Sbjct: 181 TAKQLIKKREQLQTSGQDTETKRFVVGDK 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725651|ref|NP_001236332.1| uncharacterized protein LOC100305761 [Glycine max] gi|255626545|gb|ACU13617.1| unknown [Glycine max]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 143/198 (72%), Gaps = 9/198 (4%)

Query: 1   MKLTWNKNKGNKK-RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALS 59
           MK+TW   K  +   +L  F +LPF+   Q+H         N D  +     DA QLA  
Sbjct: 1   MKVTWKNKKKKRCLPTLSHFTDLPFEHNHQQHS--------NTDAEDGAHVPDATQLANE 52

Query: 60  FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
           F+AQG+ LA DGK+REALGKWEA L L P+  V+HEQKAQVLLE GDAWNALKAATRATE
Sbjct: 53  FQAQGDKLAMDGKYREALGKWEAVLALAPDVPVVHEQKAQVLLETGDAWNALKAATRATE 112

Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179
           L+ SWAEAW+TLGRAQLNFGE D AIESF+ ALA+KPD EEA+DDR+TA  LVK+RK LH
Sbjct: 113 LDPSWAEAWVTLGRAQLNFGESDNAIESFDHALALKPDYEEAQDDRKTASRLVKKRKQLH 172

Query: 180 LSGLSNDANRFVVGDKTE 197
            SGLS   NR++VG+K E
Sbjct: 173 SSGLSATQNRYMVGEKDE 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183964|ref|NP_177847.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|17381164|gb|AAL36394.1| unknown protein [Arabidopsis thaliana] gi|37202106|gb|AAQ89668.1| At1g77230 [Arabidopsis thaliana] gi|51969438|dbj|BAD43411.1| hypothetical protein [Arabidopsis thaliana] gi|51969472|dbj|BAD43428.1| hypothetical protein [Arabidopsis thaliana] gi|332197831|gb|AEE35952.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 122/213 (57%), Positives = 145/213 (68%), Gaps = 18/213 (8%)

Query: 1   MKLTWNKNKGNKKR-SLQQFPNLPFDQQDQEHGLSGAELEKNDDN--------------- 44
           MKLTWNKN   + R  L  FP+LPF++ D     S     ++D +               
Sbjct: 1   MKLTWNKNPKKRSRLVLSNFPDLPFEKDDSLESQSHLHFREDDIDRRQTTDQLDSSEVGG 60

Query: 45  NEHQEPFD--AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102
           N  +E FD  AK+LA S  AQG+  AE+GK++EALGKWEAALNL PE+A+LHEQKAQVLL
Sbjct: 61  NHPRENFDVEAKKLAESIRAQGDKFAEEGKYQEALGKWEAALNLVPEDAILHEQKAQVLL 120

Query: 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           ELGDAW ALKAATRATE++ SWAEAW TLGRAQLNFGEPD AI SFE AL I  DS EA+
Sbjct: 121 ELGDAWKALKAATRATEIDPSWAEAWTTLGRAQLNFGEPDSAIRSFESALLINADSREAK 180

Query: 163 DDRQTALHLVKRRKHLHLSGLSNDANRFVVGDK 195
           DD ++A  L+K+R+ L  SG   D  RFVV DK
Sbjct: 181 DDLKSAKQLIKKREQLQTSGQDTDTTRFVVNDK 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3540197|gb|AAC34347.1| Unknown protein [Arabidopsis thaliana]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/232 (52%), Positives = 145/232 (62%), Gaps = 37/232 (15%)

Query: 1   MKLTWNKNKGNKKR-SLQQFPNLPFDQQDQEHGLSGAELEKNDDN--------------- 44
           MKLTWNKN   + R  L  FP+LPF++ D     S     ++D +               
Sbjct: 1   MKLTWNKNPKKRSRLVLSNFPDLPFEKDDSLESQSHLHFREDDIDRRQTTDQLDSSEVGG 60

Query: 45  NEHQEPFD--AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102
           N  +E FD  AK+LA S  AQG+  AE+GK++EALGKWEAALNL PE+A+LHEQKAQVLL
Sbjct: 61  NHPRENFDVEAKKLAESIRAQGDKFAEEGKYQEALGKWEAALNLVPEDAILHEQKAQVLL 120

Query: 103 ELGDAWNALKAATR-------------------ATELEQSWAEAWITLGRAQLNFGEPDK 143
           ELGDAW ALKAATR                   ATE++ SWAEAW TLGRAQLNFGEPD 
Sbjct: 121 ELGDAWKALKAATRYDEYSSRTLLTVPMVFVTGATEIDPSWAEAWTTLGRAQLNFGEPDS 180

Query: 144 AIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDK 195
           AI SFE AL I  DS EA+DD ++A  L+K+R+ L  SG   D  RFVV DK
Sbjct: 181 AIRSFESALLINADSREAKDDLKSAKQLIKKREQLQTSGQDTDTTRFVVNDK 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
MGI|MGI:1914765	262	Ttc33 "tetratricopeptide repea	0.773	0.587	0.389	5.7e-20
ZFIN|ZDB-GENE-040718-480	268	ttc33 "tetratricopeptide repea	0.743	0.552	0.392	9.2e-20
UNIPROTKB|Q43468	569	STI "Heat shock protein STI" [	0.633	0.221	0.307	6.3e-10
FB|FBgn0032640	331	Sgt "small glutamine-rich tetr	0.567	0.341	0.274	1.6e-09
TAIR|locus:2137440	427	TPR8 "AT4G08320" [Arabidopsis	0.763	0.355	0.265	3.6e-09
TAIR|locus:2026197	571	Hop2 "Hop2" [Arabidopsis thali	0.497	0.173	0.313	5.9e-09
DICTYBASE|DDB_G0275389	535	DDB_G0275389 "Dyslexia suscept	0.788	0.293	0.206	8.7e-09
MGI|MGI:1928373	494	Dnajc7 "DnaJ (Hsp40) homolog,	0.603	0.242	0.3	1.3e-08
ZFIN|ZDB-GENE-051128-1	1102	ogt.2 "O-linked N-acetylglucos	0.633	0.114	0.303	4.8e-08
RGD|1303226	494	Dnajc7 "DnaJ (Hsp40) homolog,	0.603	0.242	0.291	5.3e-08

MGI|MGI:1914765 Ttc33 "tetratricopeptide repeat domain 33" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 62/159 (38%), Positives = 87/159 (54%)

Query:     5 WNKNKGNK--KRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEA 62
             W +  G K  K + QQF     D++D      G  L+ +    E  +    KQ +   + 
Sbjct:     6 WKRRIGEKVSKATSQQFEAEAADEKDAAENEDGNWLQASKRRKETLQE-GCKQRSQQLKD 64

Query:    63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE- 121
             +G  LAE+ +++EA+ KW+ AL L P +A L+E K+QVLL L + + A+ AA  A +   
Sbjct:    65 EGAQLAENKRYKEAIQKWDEALQLTPGDATLYEMKSQVLLSLHEMFPAVHAAEMAVKRNP 124

Query:   122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
              SW EAW TLGRAQL  GE   AI SF+ AL I P + E
Sbjct:   125 HSW-EAWQTLGRAQLGLGEIVLAIRSFQIALHIYPMNPE 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-480 ttc33 "tetratricopeptide repeat domain 33" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 62/158 (39%), Positives = 89/158 (56%)

Query:     5 WNKNKGNK--KRSLQQFPNLPFDQQDQEH----GLSGAELEKNDDNNEHQEPFDAKQLAL 58
             W +  G +  K+++QQF     +Q D++     G+    + K        E   AK   L
Sbjct:     6 WKRKVGERVSKQTVQQFEQ-DSEQADEDEVEREGVDWLHVIKRK-REVLLEDCAAKSKRL 63

Query:    59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRAT 118
               E  G  LAE  +  EAL KW+ A+ L PE+AVL+E K+QVL+ LG+ + A+++A  AT
Sbjct:    64 KEE--GALLAEQDRNWEALKKWDEAVQLTPEDAVLYEMKSQVLITLGEVFLAVQSAEMAT 121

Query:   119 ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
              L   W EAW TLGRAQL+ GE + A+ SF+ AL + P
Sbjct:   122 RLRPIWWEAWQTLGRAQLSLGEVELAVRSFQVALHLHP 159

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q43468 STI "Heat shock protein STI" [Glycine max (taxid:3847)]

 Score = 152 (58.6 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 39/127 (30%), Positives = 63/127 (49%)

Query:    37 ELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ 96
             E EK     E QE FD K LA     +GN L +  K+ EA   +  A+   P++A  +  
Sbjct:   362 EAEKAKKELEQQEYFDPK-LADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSN 420

Query:    97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
             +A    +LG     LK A +  EL+ ++++ +   G  Q +  E DKA+E++   L   P
Sbjct:   421 RAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDP 480

Query:   157 DSEEARD 163
             +++E  D
Sbjct:   481 NNQELLD 487

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0009408 "response to heat" evidence=IDA

FB|FBgn0032640 Sgt "small glutamine-rich tetratricopeptide containing protein" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/113 (27%), Positives = 63/113 (55%)

Query:    56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
             LA S + +GN L ++ K+ EAL ++  A+   P+N + +  +A   + LG+   A+    
Sbjct:   115 LAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCK 174

Query:   116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
              A     ++++A+  LG A  N G  +KA +++ +A+ ++PD+E  + + + A
Sbjct:   175 SALVYNNNYSKAYCRLGVAYSNMGNFEKAEQAYAKAIELEPDNEVYKSNLEAA 227

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

TAIR|locus:2137440 TPR8 "AT4G08320" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 42/158 (26%), Positives = 79/158 (50%)

Query:    16 LQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQ----EPFDAKQLALSFEAQGNNLAEDG 71
             ++ F N P D  D    L  A    +D  NE +    + FD   LA + + QGN   +  
Sbjct:   131 VRYFRNTP-DGDDDPAQLEKATRIFHDCVNEMEKSGCQTFDVNSLAETLKCQGNKAMQSN 189

Query:    72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131
              + EA+  +  A+ L  +NAV +  +A    ++     A+K   ++ E++ ++++A+  L
Sbjct:   190 LYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSIEIDPNYSKAYSRL 249

Query:   132 GRAQLNFGEPDKAIES-FERALAIKPDSEEARDDRQTA 168
             G A    G+  +AIE  F++AL + P +E  +++ + A
Sbjct:   250 GLAYYAQGKYAEAIEKGFKKALLLDPHNESVKENIRVA 287

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/99 (31%), Positives = 49/99 (49%)

Query:    61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
             +A+GN     G F  A+  +  A+NL P N VL   ++     L     AL  A +  EL
Sbjct:     6 KAKGNAAFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAHASLNHYDEALSDAKKTVEL 65

Query:   121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
             +  W + +  LG A L   + D+A+E++ + L I P +E
Sbjct:    66 KPDWGKGYSRLGAAHLGLNQFDEAVEAYSKGLEIDPSNE 104

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

DICTYBASE|DDB_G0275389 DDB_G0275389 "Dyslexia susceptibility 1 candidate gene 1 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 141 (54.7 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 33/160 (20%), Positives = 81/160 (50%)

Query:     6 NKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEP--FDAKQLALSFEAQ 63
             N N  +K+   ++  N   ++ ++E      + +K ++  E ++       +LA  ++ +
Sbjct:   285 NNNNNDKQEEQKEQTNGKNEKDEEEEKEKDNKKDKEEEEVEKEDENILSQAELANFYKLE 344

Query:    64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
             GN   +   + +A+  +  A++++P + +L+  ++    + G    +L+ A  + +LE +
Sbjct:   345 GNEYFKHNIYFDAIESYSKAISIKPSH-LLYSNRSISYYKFGLFAESLQDALESIKLEAN 403

Query:   124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163
             W + +   G+A     + D+AI+ +E+ L I+PD +  RD
Sbjct:   404 WVKGYHRAGQALEKLNQKDEAIKYYEKGLLIEPDHQPMRD 443

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 36/120 (30%), Positives = 60/120 (50%)

Query:    49 EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108
             E  DAK+ A SF+ QGN       + EA   +  A+++ P NA  +  +A  L+ LG   
Sbjct:    20 EDEDAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFR 79

Query:   109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
              AL  A ++  L+ S+    +  G+  L+ G    A  SF+RAL +   + +A+ + + A
Sbjct:    80 EALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNA 139

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

ZFIN|ZDB-GENE-051128-1 ogt.2 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 2" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 40/132 (30%), Positives = 63/132 (47%)

Query:    36 AELEKNDDNNEHQEPFDAKQLAL--SFEAQGNNLA----EDGKFREALGKWEAALNLRPE 89
             A +++   N E       K L +   F A  +NLA    + GK +EAL  +E A+ + P 
Sbjct:   390 ANIKREQGNIEEAVQLYRKALEVFPDFAAAHSNLASVLQQQGKLQEALMHYEEAIRISPT 449

Query:    90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149
              A  +      L E+ D   AL+  TRA ++  ++A+A   L     + G   +AI S+ 
Sbjct:   450 FADAYSNMGNTLKEMQDIQGALRCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 509

Query:   150 RALAIKPDSEEA 161
              AL +KPD  +A
Sbjct:   510 TALKLKPDFPDA 521

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IMP

RGD|1303226 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Rattus norvegicus (taxid:10116)]

 Score = 136 (52.9 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query:    49 EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108
             E  +AK+ A SF+ QGN       + EA   +  A+++ P+NA  +  +A  L+ LG   
Sbjct:    20 EDEEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFR 79

Query:   109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
              AL  A ++  L+ S+    +  G+  L+ G    A  SF+RAL +   + +A+ + + A
Sbjct:    80 EALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNA 139

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015465001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (221 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	8e-05
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	8e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
smart01043	145	smart01043, BTAD, Bacterial transcriptional activa	0.003
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
            GN   + G + EAL  +E AL L P+NA  +   A    +LG    AL+   +A EL+ 
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
             A+A+  LG A    G+ ++A+E++E+AL + P+
Sbjct: 66  DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-ALKA 113
             A + +  GN L + G + EA+  +E AL L P+NA  +   A   L+LG  +  AL+ 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 114 ATRATEL 120
             +A EL
Sbjct: 61  LEKALEL 67

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 89  ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIES 147
           +NA   +     L +LGD   A++A  +A EL+   AEA+  L  A L  G+  ++A+E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 148 FERALAIKP 156
            E+AL + P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 96  QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
               +  +LGD   AL+   +A EL+   A+A+  L  A    G+ ++A+E +E+AL + 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 156 PDSEEAR 162
           PD+ +A 
Sbjct: 65  PDNAKAY 71

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           A          + +A+  ++  +   P+NAV+    A + LEL D   AL+ A RA +L 
Sbjct: 775 ALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAERALKLA 833

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173
            +      TLG   +  GE D+A+    +A+ I P++   R       HL  
Sbjct: 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR------YHLAL 879

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query: 69  EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128
             G++ EAL   +  +  +P+N    E    +LLE   A  A++   +A  L+ +     
Sbjct: 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ 377

Query: 129 ITLGRAQLNFGEPDKAIESFERALAIKPD 157
           + L +A L  G+P +AI    R L   P+
Sbjct: 378 LNLAQALLKGGKPQEAIRILNRYLFNDPE 406

Length = 484

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 34/91 (37%), Positives = 45/91 (49%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
           G   EA+   E A  L P+        AQ  L  G    AL     A +      EAW+ 
Sbjct: 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           LGRAQL  G+ +KA+ SF++ LA++PDS  A
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
           A+A   LG A L  G+ D+A+E +E+AL + P+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 98  AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
           A +L E GDA  A +   +A EL   WA  W  LG      GE D A  ++E  L + P+
Sbjct: 2   AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61

Length = 287

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 87  RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AEAWITLGRAQLNFG 139
            P+ A      A VL  LGD   AL+   +A EL +         A A   L R  L  G
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 140 EPDKAIESFERALAIKPD 157
           + D+A+E  E+ALA++  
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 70  DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWI 129
           D  F  A+  +  A++L P NA L+  +AQ  ++LG+   A+  A +A EL+ S A+A++
Sbjct: 15  DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

Query: 130 TLGRAQLNFGEPDKAIESFERALAIKPD 157
             G A +   E   A  + E+  ++ P 
Sbjct: 75  RKGTACMKLEEYQTAKAALEKGASLAPG 102

Length = 356

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 47/114 (41%)

Query: 61  EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
           E  G+ L E  K +EA+ + + AL L P + +L    AQ LL+ G    A++   R    
Sbjct: 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403

Query: 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +      W  L +A    G   +A+ +     A+    E+A      A   VK 
Sbjct: 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKL 457

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
           AEA   LG A L  G+ D+A+E +E+AL + P+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 23/124 (18%), Positives = 45/124 (36%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105
             +   D +  A     +G      G+   A   +E AL + P +       AQ+ L   
Sbjct: 114 PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN 173

Query: 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
               A          +    +A +  G   L+ G  + A+ ++ +A+A++P++       
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233

Query: 166 QTAL 169
            T L
Sbjct: 234 ATIL 237

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 39/117 (33%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           A+   L E   F EA    + AL   PEN+      A+ LL  GD   A   A  A    
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAA--QAILAALPL 196

Query: 122 QSWAEAWITLGRAQLNFGEPDKA---IESFERALAIKPDSEEARDDRQTALHLVKRR 175
           Q+  +A   L +AQ+   E   A   I+  +R LA  PD  EA       LHLV R 
Sbjct: 197 QAQDKAAHGL-QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRN 252

Length = 304

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                  G+ ++AL     A +  P++        +  L  GD   A+ +  +   L+  
Sbjct: 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            A A + L  A        KAI S +RAL +KPD+ EA
Sbjct: 634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 22/64 (34%), Positives = 25/64 (39%)

Query: 96  QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
             A+  L  GD   AL A   A       AEA + LG A L  G   +A      ALA  
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 156 PDSE 159
           PD  
Sbjct: 62  PDDP 65

Length = 65

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
           A A+  LG+  L  G+ ++A E +E+AL + P++
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 69  EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128
             G+  EA+     AL L P++        +  L LGD   A +   +ATEL+   A A 
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

Query: 129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
             LG ++L+ G+P +AI   E A  + P+   A  D    L  ++  +
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSGQ 446

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 19/63 (30%), Positives = 25/63 (39%)

Query: 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
           A      L +   EA   L  A L  G  ++A+   ER LA+ P  E        AL+  
Sbjct: 49  AEAERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRA 108

Query: 173 KRR 175
            RR
Sbjct: 109 GRR 111

Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 42  DDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALN---LRPENAVLHEQKA 98
           +D+NE  E     QL L  ++  +   E   + EA   +E AL+   L  + A+    + 
Sbjct: 281 EDSNELDEETGNGQLQLGLKSPESKADE--SYEEAARAFEKALDLGKLGEKEAIALNLRG 338

Query: 99  QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
                 G    AL   +++ EL+    +++I      L  G+PDKA E F++AL +  +
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 19/88 (21%), Positives = 35/88 (39%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
               +  +  K++ A+ + + AL   P +A       ++ L LGD   A K   +A  L 
Sbjct: 27  EAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLG 86

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFE 149
               +    L RA L  G+  + ++   
Sbjct: 87  YPKNQVLPLLARAYLLQGKFQQVLDELP 114

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           LAL ++  G     +  FR AL        L P N  +       L + G    A++   
Sbjct: 71  LALYYQQLGELEKAEDSFRRAL-------TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123

Query: 116 RATELEQ--SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           +A E       A +    G   L  G+ DKA +   RAL I P   E+ 
Sbjct: 124 QAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
KOG1126	638	consensus DNA-binding cell division cycle control	99.86
PRK15359	144	type III secretion system chaperone protein SscB;	99.86
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
KOG1126	638	consensus DNA-binding cell division cycle control	99.85
KOG0553	304	consensus TPR repeat-containing protein [General f	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
KOG1125	579	consensus TPR repeat-containing protein [General f	99.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
PRK12370	553	invasion protein regulator; Provisional	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.81
PRK12370	553	invasion protein regulator; Provisional	99.8
PRK11189	296	lipoprotein NlpI; Provisional	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.79
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.78
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.75
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.73
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.73
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.73
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.7
PLN02789	320	farnesyltranstransferase	99.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.68
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.66
KOG1129	478	consensus TPR repeat-containing protein [General f	99.66
KOG2076	895	consensus RNA polymerase III transcription factor	99.66
KOG1125	579	consensus TPR repeat-containing protein [General f	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
PLN02789	320	farnesyltranstransferase	99.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.64
KOG0553	304	consensus TPR repeat-containing protein [General f	99.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.61
KOG1129	478	consensus TPR repeat-containing protein [General f	99.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.59
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.59
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.59
PRK15331	165	chaperone protein SicA; Provisional	99.59
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.58
KOG2076	895	consensus RNA polymerase III transcription factor	99.58
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.56
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.56
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.55
PRK14574	822	hmsH outer membrane protein; Provisional	99.54
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.54
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.52
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.51
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.5
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.5
PRK14574	822	hmsH outer membrane protein; Provisional	99.5
KOG2003	840	consensus TPR repeat-containing protein [General f	99.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.47
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.47
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.47
PRK10803	263	tol-pal system protein YbgF; Provisional	99.46
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.46
KOG4234	271	consensus TPR repeat-containing protein [General f	99.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.43
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.41
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.41
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.38
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.38
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.37
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.35
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.35
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.35
PF12688	120	TPR_5: Tetratrico peptide repeat	99.35
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.33
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.32
PF13371	73	TPR_9: Tetratricopeptide repeat	99.32
PRK11906	458	transcriptional regulator; Provisional	99.3
PF13371	73	TPR_9: Tetratricopeptide repeat	99.3
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.29
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.29
PF13512	142	TPR_18: Tetratricopeptide repeat	99.28
PRK15331	165	chaperone protein SicA; Provisional	99.28
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.26
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.26
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.21
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.18
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.18
PRK11906	458	transcriptional regulator; Provisional	99.17
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.16
KOG4555	175	consensus TPR repeat-containing protein [Function	99.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.15
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.13
PRK10803	263	tol-pal system protein YbgF; Provisional	99.13
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.1
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.1
PF13512	142	TPR_18: Tetratricopeptide repeat	99.1
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.1
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.09
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
KOG4234	271	consensus TPR repeat-containing protein [General f	99.05
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.04
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.0
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.96
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.94
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.94
PLN03218	1060	maturation of RBCL 1; Provisional	98.93
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.93
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.91
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.91
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.9
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.87
PLN03218	1060	maturation of RBCL 1; Provisional	98.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.87
PF13428	44	TPR_14: Tetratricopeptide repeat	98.85
PLN03077	857	Protein ECB2; Provisional	98.84
KOG4555	175	consensus TPR repeat-containing protein [Function	98.8
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.79
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.79
PF13428	44	TPR_14: Tetratricopeptide repeat	98.79
PF13431	34	TPR_17: Tetratricopeptide repeat	98.68
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.67
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.64
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.63
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.63
PF13431	34	TPR_17: Tetratricopeptide repeat	98.62
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.6
PRK04841	903	transcriptional regulator MalT; Provisional	98.59
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.59
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.57
PLN03077	857	Protein ECB2; Provisional	98.56
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.55
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.55
KOG2471	696	consensus TPR repeat-containing protein [General f	98.52
PRK04841	903	transcriptional regulator MalT; Provisional	98.49
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.49
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.48
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.47
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.47
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.38
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.38
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.38
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.32
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.26
KOG1585	308	consensus Protein required for fusion of vesicles	98.24
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.17
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.16
KOG1586	288	consensus Protein required for fusion of vesicles	98.15
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.13
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.09
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.09
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.09
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	98.02
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	98.0
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.0
PRK10941	269	hypothetical protein; Provisional	97.97
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.97
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.93
KOG2471	696	consensus TPR repeat-containing protein [General f	97.92
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.92
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.92
PRK10941	269	hypothetical protein; Provisional	97.91
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.87
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.86
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.86
KOG1310	758	consensus WD40 repeat protein [General function pr	97.83
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.83
KOG1586	288	consensus Protein required for fusion of vesicles	97.81
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.8
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.76
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.76
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.74
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.73
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.72
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.71
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.65
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.62
KOG1585	308	consensus Protein required for fusion of vesicles	97.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.53
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.52
KOG3364	149	consensus Membrane protein involved in organellar	97.47
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.45
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.38
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.35
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.33
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.3
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.29
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.26
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.24
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.2
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.19
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.18
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.15
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.14
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.12
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.12
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.12
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.09
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.05
KOG3364	149	consensus Membrane protein involved in organellar	97.02
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.0
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.95
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.95
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.93
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.92
COG2912	269	Uncharacterized conserved protein [Function unknow	96.86
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.83
COG2912	269	Uncharacterized conserved protein [Function unknow	96.8
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.78
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.73
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.7
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.69
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	96.65
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.63
KOG1258	577	consensus mRNA processing protein [RNA processing	96.57
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.56
KOG1310	758	consensus WD40 repeat protein [General function pr	96.54
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.48
KOG2581	493	consensus 26S proteasome regulatory complex, subun	96.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.45
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.39
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.28
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.26
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.25
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.11
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.11
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.02
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.01
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	96.01
KOG2422	665	consensus Uncharacterized conserved protein [Funct	95.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.9
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.9
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.84
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.78
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.75
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.74
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.7
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.69
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.58
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.44
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.24
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.14
COG3947	361	Response regulator containing CheY-like receiver a	95.1
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.76
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.7
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.63
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.5
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.49
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.45
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.06
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.99
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.98
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.78
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.74
COG3947	361	Response regulator containing CheY-like receiver a	93.72
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.7
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.66
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.63
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.45
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.23
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.2
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.04
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	92.97
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.59
PF12854	34	PPR_1: PPR repeat	92.51
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.4
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.33
COG4941	415	Predicted RNA polymerase sigma factor containing a	92.33
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.25
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.14
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.75
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.71
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.44
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	91.14
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.63
PF12854	34	PPR_1: PPR repeat	90.41
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.34
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	90.23
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.09
PF13041	50	PPR_2: PPR repeat family	89.7
KOG1258	577	consensus mRNA processing protein [RNA processing	89.55
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	89.05
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.96
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	88.79
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	88.66
KOG0687	393	consensus 26S proteasome regulatory complex, subun	88.46
PHA02537	230	M terminase endonuclease subunit; Provisional	88.24
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.19
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	87.65
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	87.15
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.99
PRK11619	644	lytic murein transglycosylase; Provisional	86.75
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	86.74
KOG3783	546	consensus Uncharacterized conserved protein [Funct	86.29
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.13
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.0
COG5187	412	RPN7 26S proteasome regulatory complex component,	85.91
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	85.86
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	84.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.95
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	83.78
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	83.35
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.01
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	82.87
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	82.74
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	81.9
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	81.84
COG1747	711	Uncharacterized N-terminal domain of the transcrip	81.82
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	81.16
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	80.36
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.24
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	80.2

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=3.8e-24  Score=161.22  Aligned_cols=172  Identities=21%  Similarity=0.225  Sum_probs=124.1

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      +.+...|++|...  -++|+++-..|+..+|...|.++  ..|..+++++++|+++..+|.+++|...|.++++..|+.+
T Consensus       311 ral~~~P~F~~Ay--~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a  388 (966)
T KOG4626|consen  311 RALELQPNFPDAY--NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA  388 (966)
T ss_pred             HHHhcCCCchHHH--hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence            4455555555332  35566777777777777777776  6677777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      .++.+||.+|.++|++++|+.+|+.++++.|...+++.++|..|..+|+.+.|+++|.+++.++|..++++.+|+.+|..
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD  468 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD  468 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             Hhhhhhhhhhcccccc
Q 029105          172 VKRRKHLHLSGLSNDA  187 (199)
Q Consensus       172 ~~~~~~a~~~~~~~~~  187 (199)
                      .|+..+|..++..+..
T Consensus       469 sGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  469 SGNIPEAIQSYRTALK  484 (966)
T ss_pred             cCCcHHHHHHHHHHHc
Confidence            7777777766655544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-24  Score=160.39  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=104.8

Q ss_pred             cccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH
Q 029105           16 LQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL   93 (199)
Q Consensus        16 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~   93 (199)
                      +...|+++  ....++|+++-..+.++.|+..|.++  ..|+.+.++-++|.+|+.+|..+.|+.+|++++++.|+.+++
T Consensus       245 vkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A  322 (966)
T KOG4626|consen  245 VKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA  322 (966)
T ss_pred             hcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence            34444433  33456677777777777777766666  556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      +.++|..+-..|+..+|..+|.+++.+.|+++++.++||.++.++|.+++|...|++++...|+...+..+|+.+|...|
T Consensus       323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg  402 (966)
T KOG4626|consen  323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG  402 (966)
T ss_pred             HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhhhhhhcc
Q 029105          174 RRKHLHLSGL  183 (199)
Q Consensus       174 ~~~~a~~~~~  183 (199)
                      ++++|...+.
T Consensus       403 nl~~Ai~~Yk  412 (966)
T KOG4626|consen  403 NLDDAIMCYK  412 (966)
T ss_pred             cHHHHHHHHH
Confidence            6666554443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.5e-21  Score=155.13  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=146.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  .+|.....+..+|.++...|++++|+..|++++..+|+++.+++.+|.+++..|+
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  414 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE  414 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            45688888999999999999988  7888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|...+..+.
T Consensus       415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887665544


Q ss_pred             c
Q 029105          187 A  187 (199)
Q Consensus       187 ~  187 (199)
                      +
T Consensus       495 ~  495 (615)
T TIGR00990       495 E  495 (615)
T ss_pred             h
Confidence            3

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.4e-22  Score=150.64  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=139.2

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc------------------------------------chhhHHHHHHHHhhHHHh
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF------------------------------------DAKQLALSFEAQGNNLAE   69 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~   69 (199)
                      ....++|..|+.+++|++|...|+.+                                    .+|..|+.|..+|+|+-.
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            44467899999999999999887654                                    467788899999999999


Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      +++++.|+++|++++.++|.+..+|..+|.=+.....++.|..+|+.|+..+|.+..+|+.+|.+|.++++++.|+-.|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            99999999999999999999998888888888888889999999999999999988899999999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          150 RALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      +|+.++|.+......+|.++.++|+.++|...+-.+
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            999999988888888888888888888877654433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.86  E-value=3.3e-20  Score=120.83  Aligned_cols=114  Identities=22%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      ++++|+..|++++.+.|+++..+.+++.+...++
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.6e-20  Score=137.33  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=152.2

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      -.|+.|.-.++.++|+..|+++  .+|....+|..+|.-|....+...|++.|++|++++|.+..+|+.+|+.|--++-.
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh  414 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH  414 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence            3477788888999999999999  89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      --|+-+|++|+...|+++..|..+|.||.++++.++|+++|.+++.....+..++..||.+|.++++..+|...+..-.+
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887665555


Q ss_pred             hhhhcCC
Q 029105          188 NRFVVGD  194 (199)
Q Consensus       188 ~~~~~~~  194 (199)
                      .....|.
T Consensus       495 ~~~~eg~  501 (559)
T KOG1155|consen  495 VSELEGE  501 (559)
T ss_pred             HHHhhcc
Confidence            4433333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=1.8e-20  Score=125.85  Aligned_cols=152  Identities=18%  Similarity=0.128  Sum_probs=143.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|.-|+..|++..|...++++  .+|....++..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.+|+
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence            57899999999999999999999  8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          107 AWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       107 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      +++|.+.|++++..  .|..+.++.++|.|..+.|+++.|...|+++++++|+++.....++..+...|++-+|..
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            99999999999975  345677899999999999999999999999999999999999999999999999988754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.3e-20  Score=142.80  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=152.2

Q ss_pred             ccccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           13 KRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      ++++...|++.+..  ..+|.-+....+++.|...|+.+  .+|.+-.+|+.+|.+|.++++++.|.-.|++|+.++|.+
T Consensus       445 ~RAiQldp~faYay--TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n  522 (638)
T KOG1126|consen  445 KRAIQLDPRFAYAY--TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN  522 (638)
T ss_pred             HHhhccCCccchhh--hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence            36667777655443  55788888889999999999988  788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      ......+|.++.+.|+.++|++.+++|+.++|.++...+..|.+++.++++++|+..+++.-++.|++..++..+|.+|.
T Consensus       523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k  602 (638)
T KOG1126|consen  523 SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK  602 (638)
T ss_pred             hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhcc
Q 029105          171 LVKRRKHLHLSGL  183 (199)
Q Consensus       171 ~~~~~~~a~~~~~  183 (199)
                      ++|+.+.|...+.
T Consensus       603 ~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  603 RLGNTDLALLHFS  615 (638)
T ss_pred             HHccchHHHHhhH
Confidence            9999998876543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=6.3e-20  Score=127.80  Aligned_cols=122  Identities=30%  Similarity=0.500  Sum_probs=117.2

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      ..++.+..-|+-++..++|.+|+..|.+||.++|.++.+|.+.+.+|.++|.++.|++.++.++.+||.+..+|..+|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK  176 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  176 (199)
                      |..+|++++|+..|++++.++|++..++.+|..+-..+++..
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999998888766

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=1.1e-19  Score=144.52  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=140.3

Q ss_pred             cchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105           39 EKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        39 ~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  113 (199)
                      +.|++|+..|.++     ..|....++..+|.+++..|++++|+..|++++.++|.+...+..+|.++...|++++|+..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5788999988877     25788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++..++.++|.++..+|++++|...+.....
T Consensus       388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  461 (615)
T TIGR00990       388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK  461 (615)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=3.7e-19  Score=124.79  Aligned_cols=160  Identities=20%  Similarity=0.144  Sum_probs=145.9

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      .....+|..+...|++++|+..+.++  ..|.+..++..+|.++...|++++|+..+++++...|.+..++.++|.++..
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            33467799999999999999999887  6788889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          104 LGDAWNALKAATRATELE--QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      .|++++|+..+++++...  |.....+..+|.++...|++++|+..+.+++..+|+++.++..++.++...|++++|...
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999853  556778999999999999999999999999999999999999999999999999998775


Q ss_pred             cccc
Q 029105          182 GLSN  185 (199)
Q Consensus       182 ~~~~  185 (199)
                      ....
T Consensus       192 ~~~~  195 (234)
T TIGR02521       192 LERY  195 (234)
T ss_pred             HHHH
Confidence            5443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=9.8e-20  Score=136.21  Aligned_cols=165  Identities=17%  Similarity=0.109  Sum_probs=147.6

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHH-------
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK-------   97 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l-------   97 (199)
                      ..+..|..+++.|+..+|.-.|+.+  .+|.++++|..+|.+....++-..|+..++++++++|++..++..|       
T Consensus       287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            3466789999999999999999888  8999999999999999999999999999999999888876555554       


Q ss_pred             ----------------------------------------------------------------------HHHHHHcCCH
Q 029105           98 ----------------------------------------------------------------------AQVLLELGDA  107 (199)
Q Consensus        98 ----------------------------------------------------------------------a~~~~~~~~~  107 (199)
                                                                                            |.+|...|+|
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence                                                                                  4444445559


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++|+.+|+.||...|++...|..||-.+..-.+..+|+..|.+|+++.|.+..+++++|.+++.+|.|++|.+.+++++.
T Consensus       447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             hhhh
Q 029105          188 NRFV  191 (199)
Q Consensus       188 ~~~~  191 (199)
                      ..-.
T Consensus       527 mq~k  530 (579)
T KOG1125|consen  527 MQRK  530 (579)
T ss_pred             hhhc
Confidence            5433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=4.4e-19  Score=145.22  Aligned_cols=160  Identities=14%  Similarity=0.018  Sum_probs=130.6

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ....|.++...|++++|+..+.++  ..|........++......|++++|+..|+++++.+|+ +.++.++|.++.+.|
T Consensus       545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG  623 (987)
T PRK09782        545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH  623 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence            345577777778888777777766  44555555556666666678888888888888888886 888888898888999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|+..+++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|...+..+
T Consensus       624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999888888999988888899999999999999999988888999999999889888888766655


Q ss_pred             cch
Q 029105          186 DAN  188 (199)
Q Consensus       186 ~~~  188 (199)
                      .+.
T Consensus       704 l~l  706 (987)
T PRK09782        704 IDD  706 (987)
T ss_pred             Hhc
Confidence            544

>PRK12370 invasion protein regulator; Provisional

Probab=99.82  E-value=4.3e-19  Score=139.18  Aligned_cols=146  Identities=15%  Similarity=-0.008  Sum_probs=135.0

Q ss_pred             cchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105           39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR  116 (199)
Q Consensus        39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (199)
                      +++++|+..+.++  .+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4578899999888  88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       117 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      +++++|.++..+..++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+..
T Consensus       398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~  466 (553)
T PRK12370        398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE  466 (553)
T ss_pred             HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999998887777878888999999999999999875 78899999999999999999999886543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=7.2e-19  Score=140.13  Aligned_cols=157  Identities=15%  Similarity=0.078  Sum_probs=122.1

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFRE----ALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      .|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++    |+..|++++.++|+++.++..+|.++...
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            356667777777777777776  667777778888888888888775    67888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      |++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|++......++.++...|++++|...+..
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~  377 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH  377 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888887776666677778888888887776554


Q ss_pred             ccc
Q 029105          185 NDA  187 (199)
Q Consensus       185 ~~~  187 (199)
                      ..+
T Consensus       378 al~  380 (656)
T PRK15174        378 YIQ  380 (656)
T ss_pred             HHH
Confidence            443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.1e-19  Score=131.52  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=144.2

Q ss_pred             CCCCCCchHhhhcchhhhhccchhhhhhccccc--chhh----------------------------------HHHHHHH
Q 029105           19 FPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQ----------------------------------LALSFEA   62 (199)
Q Consensus        19 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~----------------------------------~~~~~~~   62 (199)
                      +|+.++-.  ...|.+.+...++++|+..|+..  .+|-                                  .++....
T Consensus       258 f~~~~~i~--~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCi  335 (559)
T KOG1155|consen  258 FPNSMYIK--TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCI  335 (559)
T ss_pred             CCccHHHH--HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceee
Confidence            45544432  34578888889999999988776  2221                                  1122234


Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  142 (199)
                      +|+-|...++.++|+.+|+++++++|....+|..+|.=|.++++...|++.|++|+.++|.+..+|+.+|++|..++...
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            56667777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      -|+-+|++++...|+++..|..||.||.++++.++|.+.+..+..
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.80  E-value=1.1e-18  Score=136.83  Aligned_cols=147  Identities=10%  Similarity=-0.058  Sum_probs=132.7

Q ss_pred             cchhhhhhccccc--chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      +.+++|+..|.++  .+|+++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4567899999888  8899999999999887643         4489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...++.++...|++++|...+...
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999887777777788889999887765443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=2.1e-18  Score=125.38  Aligned_cols=156  Identities=12%  Similarity=-0.040  Sum_probs=100.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      .++|.++...|++++|+..|.++  .+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|+
T Consensus        68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  147 (296)
T PRK11189         68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR  147 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            45677777777777777777766  6677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------------------------------
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--------------------------------  154 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------------  154 (199)
                      +++|++.++++++++|+++... ....+....+++++|+..+.+++..                                
T Consensus       148 ~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~  226 (296)
T PRK11189        148 YELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGAT  226 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCC
Confidence            7777777777777777765211 1111223344555555555433321                                


Q ss_pred             -----CCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          155 -----KPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       155 -----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                           .|...+++.++|.++...|++++|...+..+
T Consensus       227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A  262 (296)
T PRK11189        227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA  262 (296)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                 1222345666677777777777766655443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=3.9e-18  Score=139.71  Aligned_cols=150  Identities=12%  Similarity=-0.017  Sum_probs=140.2

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      ......|++++|+..+.++  ..|. +.++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3444559999999999998  6676 889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      +..++++++++|+++.+++++|.++..+|++++|+..|++++.++|++..+....+.+.....+++.+.+.+-
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~  735 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG  735 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998888776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=7.8e-18  Score=122.45  Aligned_cols=130  Identities=18%  Similarity=0.050  Sum_probs=113.8

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..+..+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++.++
T Consensus        59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  138 (296)
T PRK11189         59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR  138 (296)
T ss_pred             CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |.++...|++++|+..|+++++.+|+++.....+ .+....+++++|...+
T Consensus       139 g~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        139 GIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence            9999999999999999999999999987422211 2233455666666554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.79  E-value=1.1e-17  Score=107.58  Aligned_cols=105  Identities=13%  Similarity=-0.015  Sum_probs=101.3

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      ++..+.++.+|..++..|++++|...|+.+..++|.+...|++||.|+..+|+|.+|+..|.+++.++|++|.++++.|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      |++..|+.+.|.+.|+.++......
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999887443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=8.4e-19  Score=126.91  Aligned_cols=156  Identities=23%  Similarity=0.216  Sum_probs=119.1

Q ss_pred             chhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           32 GLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      ..++...++++++...+..+    ..+.++..+..+|.++...|++++|+..|+++++.+|+++.+...++.++...|++
T Consensus       117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~  196 (280)
T PF13429_consen  117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY  196 (280)
T ss_dssp             -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence            45667778888888777765    33567889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +++...+.......|+++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|.........
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998888888999999999999999999999999999999999999999999999999999999999887766544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.79  E-value=6.6e-18  Score=115.56  Aligned_cols=122  Identities=20%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             cchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH-HHcCC--HHHHHHH
Q 029105           39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL-LELGD--AWNALKA  113 (199)
Q Consensus        39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~  113 (199)
                      ++.++++..+...  .+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|...
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~  132 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM  132 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3345555555554  66777788888888888888888888888888888888888888888764 56666  4788888


Q ss_pred             HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105          114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      ++++++.+|+++.+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus       133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            88888888888888888888888888888888888888877776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.78  E-value=7.2e-18  Score=119.09  Aligned_cols=156  Identities=15%  Similarity=0.065  Sum_probs=137.1

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhh---HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH---HHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQ---LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV---LHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~l   97 (199)
                      ...+..|..++..|++++|+..+..+  ..|.   ...+++.+|.+++..|++++|+..|+++++..|+++.   +++.+
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~  113 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR  113 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence            34477899999999999999999887  3443   4478899999999999999999999999999998875   78999


Q ss_pred             HHHHHHc--------CCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 029105           98 AQVLLEL--------GDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        98 a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      |.++...        |++++|+..+++++..+|++..++                 ..+|.++...|++.+|+..|++++
T Consensus       114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  193 (235)
T TIGR03302       114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV  193 (235)
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999886        889999999999999999876442                 467888999999999999999999


Q ss_pred             hcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105          153 AIKPDS---EEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       153 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ...|+.   +.++..++.++..+|++++|...
T Consensus       194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~  225 (235)
T TIGR03302       194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDA  225 (235)
T ss_pred             HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            997764   58999999999999999998874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.78  E-value=1.8e-17  Score=116.19  Aligned_cols=155  Identities=17%  Similarity=0.106  Sum_probs=141.8

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--CCcHHHHHHHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--PENAVLHEQKAQVLL  102 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~  102 (199)
                      ....+|.++...|++++|+..+.++  ..|.+..++..+|.++...|++++|+..+++++...  +.....+..+|.++.
T Consensus        67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (234)
T TIGR02521        67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL  146 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence            3356789999999999999999988  567778899999999999999999999999999853  455678999999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ..|++++|...+.+++..+|+++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|...
T Consensus       147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.77  E-value=3.5e-17  Score=105.85  Aligned_cols=114  Identities=20%  Similarity=0.233  Sum_probs=107.7

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|.+..+...+|..++..|++++|...+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+++..++.+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      |.++...|++++|+..|+++++.+|++.......
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  125 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPEYSELK  125 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence            9999999999999999999999999987754433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.77  E-value=2.1e-17  Score=131.87  Aligned_cols=153  Identities=18%  Similarity=0.133  Sum_probs=132.4

Q ss_pred             hhhhccchhhhhhccccc--chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH-
Q 029105           34 SGAELEKNDDNNEHQEPF--DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-  109 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~-  109 (199)
                      .+...|++++|+..+..+  ..| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ 
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence            356667777777766654  211 2233345567888999999999999999999999999999999999999999986 


Q ss_pred             ---HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          110 ---ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       110 ---A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                         |+..|++++.++|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++...|++++|...+....
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               89999999999999999999999999999999999999999999999999999999999999999999987664443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.76  E-value=1.9e-17  Score=136.30  Aligned_cols=152  Identities=21%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .++.++...|++++|+..+...  ..|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+ 
T Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-  819 (899)
T TIGR02917       741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-  819 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence            3444455555555555554444  4455556666666666666666666666666666666666666666666666666 


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      .+|+..+++++...|+++..+..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++|....
T Consensus       820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL  894 (899)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            556666666666666666666666666666666666666666666666666666666666666666666665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.76  E-value=2.8e-17  Score=110.72  Aligned_cols=134  Identities=18%  Similarity=0.135  Sum_probs=123.7

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      .-..+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|-+.|++++.++|++.+++.+.|..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          135 QLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++.+|++++|...|++++..  .|.....+.|+|.|..+.|+.+.|...+.++.+.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            99999999999999999875  3455788999999999999999998877655543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.76  E-value=2e-17  Score=131.15  Aligned_cols=137  Identities=12%  Similarity=-0.019  Sum_probs=131.1

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..|.++.++..+|.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      |.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...+.++.+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.75  E-value=5.9e-18  Score=110.24  Aligned_cols=119  Identities=14%  Similarity=-0.036  Sum_probs=108.6

Q ss_pred             ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .+...|+.     ....|..+...|++++|+..|..+  .+|.+..++..+|.++...|++++|+..|++++.++|+++.
T Consensus        19 al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~   93 (144)
T PRK15359         19 LLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE   93 (144)
T ss_pred             HHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            44455542     345789999999999999999998  88999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      +++++|.++...|++++|+..|++++.+.|+++..+.++|.+...+
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999876643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.75  E-value=8.3e-17  Score=119.64  Aligned_cols=115  Identities=24%  Similarity=0.349  Sum_probs=110.4

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      +...|..++..|+|++|+..|.+++.++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      ++++|+..|++++.++|+++.+...++.|...+..
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999777754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=6.4e-17  Score=122.29  Aligned_cols=151  Identities=18%  Similarity=0.099  Sum_probs=75.3

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLL  102 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~  102 (199)
                      .+|..+...|++++|+..|.++  ..|....++..++.++...|++++|+..+++++...|.+.     ..+..+|.++.
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  191 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            3345555555555555555444  2334444455555555555555555555555554444331     13344455555


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhhhhhhh
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-EEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      ..|++++|+..++++++.+|++..+++.+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|..
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555555555555555555555555555555555555555554443 2334445555555555555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.74  E-value=5.2e-17  Score=111.14  Aligned_cols=119  Identities=17%  Similarity=0.064  Sum_probs=110.6

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH-HhcCC--hHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ-LNFGE--PDKAIE  146 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~--~~~A~~  146 (199)
                      .++.++++..+++++..+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          147 SFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       147 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .++++++.+|+++.++..+|.++...|++++|........+.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999998866655443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.74  E-value=8.7e-17  Score=135.69  Aligned_cols=153  Identities=14%  Similarity=0.056  Sum_probs=138.5

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH--------
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ--------   99 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~--------   99 (199)
                      ..|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.        
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            4477888999999999999998  788889999999999999999999999999999999998876655544        


Q ss_pred             ----------------------------------HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105          100 ----------------------------------VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus       100 ----------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                                                        ++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                              4456799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          146 ESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ..+++++..+|+++.++..++..+...++.++|....
T Consensus       516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l  552 (1157)
T PRK11447        516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL  552 (1157)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999999999998888888888886644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.73  E-value=2.5e-16  Score=129.70  Aligned_cols=152  Identities=16%  Similarity=0.099  Sum_probs=119.3

Q ss_pred             cchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      +|.++...|++++|+..+...   ..+....++..+|.++...|++++|...|++++..+|++..++..+|.++...|++
T Consensus        96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~  175 (899)
T TIGR02917        96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF  175 (899)
T ss_pred             HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH
Confidence            344444455555555544433   34455667778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|....
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  250 (899)
T TIGR02917       176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA  250 (899)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888888876544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.73  E-value=8.1e-17  Score=135.89  Aligned_cols=150  Identities=16%  Similarity=0.204  Sum_probs=135.3

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH--------------H
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV--------------L   93 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------------~   93 (199)
                      ..|..+...|++++|+..|.++  ..|.++.++..+|.+++..|++++|+..|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            3478889999999999999988  78889999999999999999999999999999999997642              2


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      ...+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++.. +
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~  432 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-Q  432 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-c
Confidence            235588899999999999999999999999999999999999999999999999999999999999999999998854 4


Q ss_pred             hhhhhhh
Q 029105          174 RRKHLHL  180 (199)
Q Consensus       174 ~~~~a~~  180 (199)
                      +.++|..
T Consensus       433 ~~~~A~~  439 (1157)
T PRK11447        433 SPEKALA  439 (1157)
T ss_pred             CHHHHHH
Confidence            5666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.73  E-value=3.2e-16  Score=107.55  Aligned_cols=155  Identities=18%  Similarity=0.085  Sum_probs=139.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      +.....+...|+-+.+.....+.  .+|.+...+..+|...+..|+|..|+..++++..+.|++..+|..+|.+|.+.|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            44556666777777666666664  6777788888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      +++|...|.+++++.|+.+.+..++|..+.-.|+++.|...+..+...-+.+..+..+|+.+....|++++|....-
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999989899999999999999999999887543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.73  E-value=2.7e-16  Score=118.86  Aligned_cols=159  Identities=14%  Similarity=0.042  Sum_probs=135.5

Q ss_pred             hhhcchhhhhccchhhhhhccccc-ch-----hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF-DA-----KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL  101 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  101 (199)
                      ...+|..+...|++++|+..+..+ ..     ......+..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  151 (389)
T PRK11788         72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIY  151 (389)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            356788889999999999888766 11     123467888999999999999999999999999998889999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcccccH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105          102 LELGDAWNALKAATRATELEQSWA-----EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK  176 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  176 (199)
                      ...|++++|+..+++++...|.+.     ..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|+++
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  231 (389)
T PRK11788        152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYA  231 (389)
T ss_pred             HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHH
Confidence            999999999999999998877643     356678999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccc
Q 029105          177 HLHLSGLSND  186 (199)
Q Consensus       177 ~a~~~~~~~~  186 (199)
                      +|...+....
T Consensus       232 ~A~~~~~~~~  241 (389)
T PRK11788        232 AAIEALERVE  241 (389)
T ss_pred             HHHHHHHHHH
Confidence            9877654443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.5e-16  Score=117.34  Aligned_cols=142  Identities=26%  Similarity=0.358  Sum_probs=126.9

Q ss_pred             cchhhhhccchhhhhhccccc----------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF----------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEA   82 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   82 (199)
                      +|..+...++++.++..|.++                            .+|..+..-...|+.++..|+|..|+..|.+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            455666666666666665544                            4455556667789999999999999999999


Q ss_pred             HHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105           83 ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus        83 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      +|..+|+++.+|.++|.||..+|.+..|+..++.+++++|+...+|...|.++..+.+|+.|++.|+++++.+|.+.++.
T Consensus       384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 029105          163 DDRQTALHLV  172 (199)
Q Consensus       163 ~~l~~~~~~~  172 (199)
                      ..+..|...+
T Consensus       464 ~~~~rc~~a~  473 (539)
T KOG0548|consen  464 DGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.6e-16  Score=117.43  Aligned_cols=155  Identities=15%  Similarity=0.075  Sum_probs=138.2

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN  109 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~  109 (199)
                      |.-++-.|++-.|...+..+  .+|.....+..+|.+|....+.++-...|..+..++|.++++|+.+|.+++-.++|++
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~  412 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE  412 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence            56666677777888887777  6666666688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      |+..|++++.++|++.-++..++.+.++++++++++..|+.+.+.-|+.++.+...+.++...+++++|.+.+-.+.
T Consensus       413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887664443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.70  E-value=5.5e-16  Score=125.95  Aligned_cols=151  Identities=15%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      .-.+....|++++|+..+.++  ..|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+++
T Consensus        21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            346778889999999999888  367778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +|+..+++++..+|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|....
T Consensus       101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l  173 (765)
T PRK10049        101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI  173 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            999999999999999999 9999999999999999999999999999999999999999998888887766544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4e-16  Score=115.31  Aligned_cols=155  Identities=15%  Similarity=0.076  Sum_probs=124.0

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      +..|.+++-.+++++|+..|+++  .+|+++-++.+++.+.+++++++++...|+.+....|+.+.++...|.++..+++
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq  477 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ  477 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence            44577777778888888888877  7788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhhcccc------cHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          107 AWNALKAATRATELEQS------WAEAWITLGRAQLN-FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      ++.|++.|.+++++.|.      ++..+.+.|.+..+ .+++..|+..++++++++|....++..+|.+..++|+.++|.
T Consensus       478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi  557 (606)
T KOG0547|consen  478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI  557 (606)
T ss_pred             HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence            88888888888888877      66666666654433 477888888888888888888889999999999999999987


Q ss_pred             hhcc
Q 029105          180 LSGL  183 (199)
Q Consensus       180 ~~~~  183 (199)
                      +.+-
T Consensus       558 elFE  561 (606)
T KOG0547|consen  558 ELFE  561 (606)
T ss_pred             HHHH
Confidence            7553

>PLN02789 farnesyltranstransferase

Probab=99.69  E-value=1.3e-15  Score=111.02  Aligned_cols=139  Identities=14%  Similarity=0.073  Sum_probs=129.0

Q ss_pred             hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH--H
Q 029105           34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA--W  108 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~--~  108 (199)
                      ++...+.+++|+..+.++  .+|.+..+|..++.++...| ++++++..+.+++..+|++..+|..++.++...|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            345567888899888888  79999999999999999998 689999999999999999999999999999999874  7


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +++.++.+++..+|++..+|..+|.++...|++++|++++.++++.+|.+..+|...+.+...+
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            8899999999999999999999999999999999999999999999999999999999988765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.68  E-value=1.5e-15  Score=120.66  Aligned_cols=135  Identities=10%  Similarity=0.012  Sum_probs=127.9

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ....+|.+..+.|.+++|...+..+  ..|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.
T Consensus        88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179         88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI  167 (694)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence            3467899999999999999999998  89999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      |++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++....+-...
T Consensus       168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            999999999999999999999999999999999999999999999999987654443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.5e-15  Score=109.11  Aligned_cols=133  Identities=24%  Similarity=0.305  Sum_probs=118.5

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .+......|+.+++.|+|..|...|++++..-...               ..++.+++.|+.++++|.+|++.+.++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            35566778999999999999999999988764321               378899999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +|+|..++|..|.++..+|+++.|+..|+++++++|.|..+...|..+..+..++.+..+..++.+..
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999988888776666655543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.67  E-value=1.1e-15  Score=98.86  Aligned_cols=111  Identities=17%  Similarity=0.090  Sum_probs=104.4

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105           78 GKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      ..+++++..+|++......+|.++...|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          158 SEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       158 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++..+..+|.++...|++++|...+....+.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998876555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=2.1e-15  Score=106.33  Aligned_cols=174  Identities=20%  Similarity=0.172  Sum_probs=153.3

Q ss_pred             cccccCCCCCCchHh---hhcchhhhhccchhhhhhccccc-chhh-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105           14 RSLQQFPNLPFDQQD---QEHGLSGAELEKNDDNNEHQEPF-DAKQ-LALSFEAQGNNLAEDGKFREALGKWEAALNLRP   88 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~   88 (199)
                      ..+-..|++++.+..   .++|..|+..|-++.|...|... +.|. -..++-.+..+|....+|++|++..++...+.+
T Consensus        93 Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~  172 (389)
T COG2956          93 QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG  172 (389)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence            456677888887655   68899999999999999999988 4344 457888999999999999999999999999888


Q ss_pred             Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-HHHH
Q 029105           89 EN-----AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-EEAR  162 (199)
Q Consensus        89 ~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~  162 (199)
                      ..     +.+++.++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++.
T Consensus       173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl  252 (389)
T COG2956         173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL  252 (389)
T ss_pred             ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence            66     57888999999999999999999999999999999999999999999999999999999999999987 6788


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccc
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      -.|..||..+|+.++......+.++
T Consensus       253 ~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         253 EMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8999999999999987765544443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.66  E-value=1.6e-15  Score=97.63  Aligned_cols=107  Identities=16%  Similarity=-0.003  Sum_probs=100.2

Q ss_pred             HHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105           83 ALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus        83 ~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      +..+. ++.....+.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            44566 77788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          162 RDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       162 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      ..++|.|+...|+.+.|...+..+...+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887776655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=1.3e-16  Score=112.83  Aligned_cols=155  Identities=14%  Similarity=0.048  Sum_probs=141.0

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      ..+.++..++++++|.+.|..+  .+|.+.++...+|.-|+-.++.+-|+.+|++.+.+.-.+++.+.++|.|.+..+++
T Consensus       295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence            4567888899999999999888  78888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          108 WNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       108 ~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      +-++..|++++....   .-.++|+++|.+....|++.-|..+|+-++..+|++.+++.+|+.+..+.|+.++|.....+
T Consensus       375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            999999999997643   35679999999999999999999999999999999999999999999999999998764443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.66  E-value=6.1e-15  Score=115.71  Aligned_cols=155  Identities=17%  Similarity=0.169  Sum_probs=135.8

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      ...+..++.++..|++++|+..+..+  .+|..+.+++.+|.+|.++|+.+++..++-.|..++|.+...|..++....+
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            34456688888899999999999988  8899999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHhhhhhh
Q 029105          104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-----EEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~a  178 (199)
                      +|.+++|.-+|.+||+.+|.+.+..+..+.+|.++|+...|+..|.+++...|..     .......+..+...++.+.|
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999932     12234445556666655554


Q ss_pred             hh
Q 029105          179 HL  180 (199)
Q Consensus       179 ~~  180 (199)
                      ..
T Consensus       300 ~~  301 (895)
T KOG2076|consen  300 AK  301 (895)
T ss_pred             HH
Confidence            44

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.65  E-value=8.3e-16  Score=115.48  Aligned_cols=127  Identities=23%  Similarity=0.293  Sum_probs=116.8

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      .++++...+|.+|...|+|++|+.+|+.+|...|++...|..||.++..-.+..+|+..|++|+++.|....+++++|.+
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          135 QLNFGEPDKAIESFERALAIKPD----------SEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ++.+|.|++|..+|-.+|.+.+.          +..+|..|-.++..+++.+-+..+
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            99999999999999999988654          135788888888888888754443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.5e-15  Score=113.87  Aligned_cols=172  Identities=16%  Similarity=0.163  Sum_probs=128.3

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHH-----------------------------
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEA-----------------------------   62 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~-----------------------------   62 (199)
                      +.+..+|+.|...  +-.|.-|+..|++.+|...|.++  .+|..+.+|..                             
T Consensus       303 ~LV~~yP~~a~sW--~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h  380 (611)
T KOG1173|consen  303 KLVDLYPSKALSW--FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH  380 (611)
T ss_pred             HHHHhCCCCCcch--hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence            3455566655433  23456666666666666666665  44444444444                             


Q ss_pred             -----HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHH
Q 029105           63 -----QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWIT  130 (199)
Q Consensus        63 -----~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~  130 (199)
                           +|.-|.+.+++..|..+|.+++.+.|.++-....+|.+.+..+.|.+|+.+|+.++..-       +.....+.+
T Consensus       381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence                 45555556666667777777777888888888888988888889999999998888432       224556899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +|.++.+++.+++|+..|++++.+.|.++.++..+|.++..+|+.+.|...+..+..
T Consensus       461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=5.3e-15  Score=120.28  Aligned_cols=154  Identities=12%  Similarity=0.019  Sum_probs=124.9

Q ss_pred             cchhhhhccchhhhhhccccc--chhhH----HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC---------------
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQL----ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE---------------   89 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------------   89 (199)
                      +|.++...|++++|+..|.++  ..|..    ......++.++...|++++|+..++++....|.               
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~  357 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD  357 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence            467778888888888887766  33322    345566677778888888888888888877662               


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..++.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            13466788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhccc
Q 029105          170 HLVKRRKHLHLSGLS  184 (199)
Q Consensus       170 ~~~~~~~~a~~~~~~  184 (199)
                      ...|++++|....-.
T Consensus       438 l~~~~~~~A~~~~~~  452 (765)
T PRK10049        438 LDLQEWRQMDVLTDD  452 (765)
T ss_pred             HHhCCHHHHHHHHHH
Confidence            999999988775533

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.64  E-value=1.4e-15  Score=110.14  Aligned_cols=152  Identities=20%  Similarity=0.150  Sum_probs=103.8

Q ss_pred             hhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105           36 AELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--PENAVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      ...+++++|+..+... ..+.++..+.....++...++++++...++++....  +.++.+|..+|.++.+.|++++|+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            5677778887777665 334456677777888899999999999999977654  6778999999999999999999999


Q ss_pred             HHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       113 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +++++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|++++|...+.....
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence            999999999999999999999999999999999999888888899999999999999999999999887665443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=3.9e-15  Score=105.18  Aligned_cols=133  Identities=19%  Similarity=0.105  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---H
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---A  127 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~  127 (199)
                      +..+..++.+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45678999999999999999999999999999999876   67899999999999999999999999999998776   6


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHhhhhhhhhhc
Q 029105          128 WITLGRAQLNF--------GEPDKAIESFERALAIKPDSEEAR-----------------DDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       128 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ++.+|.++...        |++++|+..|++++..+|++..++                 ..++.++...|++.+|...+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            89999999876        889999999999999999986542                 35677888889998887765


Q ss_pred             cccc
Q 029105          183 LSND  186 (199)
Q Consensus       183 ~~~~  186 (199)
                      ....
T Consensus       190 ~~al  193 (235)
T TIGR03302       190 ETVV  193 (235)
T ss_pred             HHHH
Confidence            5443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.64  E-value=5.4e-15  Score=107.90  Aligned_cols=143  Identities=15%  Similarity=0.069  Sum_probs=128.4

Q ss_pred             hhcchhhhhcc-chhhhhhccccc--chhhHHHHHHHHhhHHHhcccH--HHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELE-KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF--REALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        29 ~~~g~~~~~~~-~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      ...|.++...| ++++++..+.++  .+|.+..+|..++.++...|+.  ++++.++.++++.+|.+..+|..++.++..
T Consensus        75 ~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~  154 (320)
T PLN02789         75 HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT  154 (320)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            35577888887 579999998888  7899999999999999888874  788999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEP----DKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      .|+++++++++.++|+.+|.+..+|..++.+....   |.+    ++++.+..+++..+|++..+|..++.++..
T Consensus       155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            99999999999999999999999999999998776   333    468888889999999999999999999987

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.64  E-value=7.3e-15  Score=100.92  Aligned_cols=135  Identities=18%  Similarity=0.167  Sum_probs=128.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|++..+ ..++..+...|+-+.+.....++...+|.+......+|...+..|++.+|+..++++..+.|+++.+|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            67888888 99999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      |.+|.+.|++++|...|.+++++.|+++.+..|++..+...|+++.|....+++..
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999987766543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=106.02  Aligned_cols=125  Identities=19%  Similarity=0.203  Sum_probs=113.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      -..|+.+++.++|.+|+..|.++  .+|.++..+.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|+
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            45699999999999999999999  8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH---HHHHHHHHHHh
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD---KAIESFERALA  153 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~  153 (199)
                      +.+|++.|+++++++|++...+.+|..+-..+++..   .+...++-+..
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~  214 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL  214 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence            999999999999999999999999999888877766   44444444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.63  E-value=2.3e-14  Score=90.42  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=98.3

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWIT  130 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  130 (199)
                      +.+++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..+++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578899999999999999999999999999876   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      +|.++..+|++++|+..+++++...|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.8e-15  Score=108.11  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------------HHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------------VLHEQ   96 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~   96 (199)
                      .+.++.-.+++++|.......  .++.+..+++..|.+++..++.+.|+.+|++++.++|++.            ..+..
T Consensus       175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence            367777788999988876655  7888999999999999999999999999999999999874            45677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhccccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSW----AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      .|.-.++.|+|..|.++|..+|.++|++    ...+.++|.+...+|+..+|+.....++.++|....++...|.|+..+
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999974    567889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccccch
Q 029105          173 KRRKHLHLSGLSNDAN  188 (199)
Q Consensus       173 ~~~~~a~~~~~~~~~~  188 (199)
                      +++++|.+.+..+++.
T Consensus       335 e~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  335 EKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999998877666553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.61  E-value=3.1e-14  Score=105.47  Aligned_cols=139  Identities=21%  Similarity=0.236  Sum_probs=127.8

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .|....+++..+..++..|++++|+..++..+...|+|+.++...+.++.+.++..+|.+.+++++.++|+.+..+.++|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  194 (199)
                      .+++..|++.+|+..+...+..+|+++..|..|+.+|..+|+..++...   ..|..+..|+
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A---~AE~~~~~G~  440 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA---RAEGYALAGR  440 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH---HHHHHHhCCC
Confidence            9999999999999999999999999999999999999999998887663   3444444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=4.6e-14  Score=96.57  Aligned_cols=142  Identities=16%  Similarity=0.072  Sum_probs=110.6

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      .|..+...|.+++|++.|...  ++|.+..++...-.+...+|+-.+|++.+..-++..+.|..+|..++.+|+..|+|.
T Consensus        92 kam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen   92 KAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE  171 (289)
T ss_pred             HHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence            366777778888888888777  677777777777777777888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +|.-++++++-+.|.++..+..+|.+++-+|   ++.-|.++|.++++++|.+..+++.+-.|...+
T Consensus       172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            8888888888888888888888888777766   345678888888888887777766665554443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=3.9e-15  Score=105.47  Aligned_cols=157  Identities=13%  Similarity=0.023  Sum_probs=131.9

Q ss_pred             hhcchhhhhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .++|.+|++.|-+.+|...++.. ..-..++.+..++.+|.+..+...|+..|.+.++..|.+.......+.++..++++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            56799999999999999988877 33446777888888999999999999999999999999888888889999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++|++.|+.+++.+|.+.++.--+|.-|+.-++.+-|+.+|++.+++.-.+++.+.++|.|+.--++++-+..++.++
T Consensus       307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            999999999999988888888888888888888888888888888888888888888888888888877766655443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.59  E-value=1.2e-13  Score=92.92  Aligned_cols=107  Identities=24%  Similarity=0.321  Sum_probs=97.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      ..+..+..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|+++.++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            456778889999999999999999999999999887654   47899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC--------------hHHHHHHHHHHHhcCCCc
Q 029105          129 ITLGRAQLNFGE--------------PDKAIESFERALAIKPDS  158 (199)
Q Consensus       129 ~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~  158 (199)
                      ..+|.++...|+              +++|++.+++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999887              577888888888888876

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.59  E-value=3.6e-14  Score=108.31  Aligned_cols=166  Identities=15%  Similarity=0.041  Sum_probs=140.0

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------C
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------R   87 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~   87 (199)
                      .....++..+...|+|++|+..+..+          ..|.-...+..+|..|..++++.+|+..|++++.+        +
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33456899999999999999998877          35666666677999999999999999999999976        3


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 029105           88 PENAVLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIK----  155 (199)
Q Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----  155 (199)
                      |.-+.++.+||..|...|++.+|..++++|+.+.        |.-+..+.+++.++..++++++|+.++++++++.    
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            4446889999999999999999999999999873        3345568889999999999999999999999873    


Q ss_pred             -C---CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105          156 -P---DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV  191 (199)
Q Consensus       156 -p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  191 (199)
                       +   .-+..+.++|.++..+|++.+|.+.+.++..+.-.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence             2   33567999999999999999999988877766433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.59  E-value=1.1e-14  Score=82.94  Aligned_cols=67  Identities=36%  Similarity=0.517  Sum_probs=41.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKP  156 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p  156 (199)
                      ++..|..+|.+++..|++++|+..|++++.++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34556666666666666666666666666666666666666666666666 46666666666666655

...

>PRK15331 chaperone protein SicA; Provisional

Probab=99.59  E-value=1.1e-13  Score=89.55  Aligned_cols=111  Identities=17%  Similarity=0.051  Sum_probs=103.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..++..+..+..|.-++..|++++|...|+-+...+|.++..++.||.|+...++|++|+..|..+..+++++|...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      |.|+..+|+...|+.+|+.++. .|.+.....
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            9999999999999999999998 466555433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.58  E-value=5.9e-14  Score=84.51  Aligned_cols=99  Identities=33%  Similarity=0.473  Sum_probs=91.9

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      +++.+|.+++..|++++|+..+++++...|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCC
Q 029105          139 GEPDKAIESFERALAIKPD  157 (199)
Q Consensus       139 ~~~~~A~~~~~~al~~~p~  157 (199)
                      |++++|...+.+++...|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988774

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.58  E-value=1.2e-13  Score=108.63  Aligned_cols=133  Identities=20%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      ....+...|+.++..|++++|...+.++|.++|.++.+|..||.+|..+|+.++++..+-.|-.++|++.+.|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .++|++.+|.-+|.+|++.+|.+.......+.++.++|+...|..-++..+..
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~  270 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL  270 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999988776655543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=4.5e-14  Score=106.13  Aligned_cols=156  Identities=19%  Similarity=0.047  Sum_probs=129.3

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+| .+...|+..+-...-.+.  ..|..+..|+..|.-|+..|++++|..+|.++..++|....+|...|..+...|..
T Consensus       284 ~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh  362 (611)
T KOG1173|consen  284 HIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH  362 (611)
T ss_pred             HHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence            344 555566554433332233  78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ++|+.+|..|-++-|........+|.=|..+++++.|...|.+|+.+.|.+|-.+..+|.+....+.+.+|...+..+.
T Consensus       363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            9999999999999888888888888888888888888888888888888888877777777777777777776555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.56  E-value=2.3e-14  Score=81.65  Aligned_cols=67  Identities=25%  Similarity=0.349  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-DAWNALKAATRATELEQ  122 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  122 (199)
                      ++.++..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999999999999999999999999999 79999999999999988

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.56  E-value=4.7e-13  Score=89.72  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=93.3

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      ........++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..+++++.++|.+...+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            344567888999999999999999999999999887763   45899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-------hcCChH-------HHHHHHHHHHhcCCCcH
Q 029105          129 ITLGRAQL-------NFGEPD-------KAIESFERALAIKPDSE  159 (199)
Q Consensus       129 ~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~  159 (199)
                      .++|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999998       777766       66666667777788654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.56  E-value=9.9e-14  Score=105.94  Aligned_cols=160  Identities=21%  Similarity=0.165  Sum_probs=137.4

Q ss_pred             hcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CCcH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PENA   91 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~   91 (199)
                      .+|..|...+++++|+..|.++          .+|..+.++.++|..|...|+|++|..++++++++.        |.-.
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            4799999999999999999887          678888999999999999999999999999998763        2334


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIK--------  155 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------  155 (199)
                      ..+.+++.++..++++++|+.++++++.+.        |.-+..+.++|.+|..+|++++|...|++++.+.        
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence            678889999999999999999999999873        2446678999999999999999999999999874        


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          156 PDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       156 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      +.....+.++|..+.+++++.+|...+.......
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3335678999999999999999888776655443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.55  E-value=3.8e-14  Score=83.90  Aligned_cols=81  Identities=26%  Similarity=0.415  Sum_probs=72.3

Q ss_pred             cccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      +|+++.|+..++++++..|.  +...++.+|.|++..|+|++|+..+++ ...+|.++..++.+|.|+..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  567788899999999999999999999 888898889999999999999999999999


Q ss_pred             HHHH
Q 029105          148 FERA  151 (199)
Q Consensus       148 ~~~a  151 (199)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.55  E-value=1.8e-14  Score=114.03  Aligned_cols=172  Identities=15%  Similarity=0.123  Sum_probs=142.9

Q ss_pred             cccccCCccccccccCCCCCCchHhhhcchhhhh------------ccchhhhhhccccc--chhhHHHHHHHHhhHHHh
Q 029105            4 TWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAE------------LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAE   69 (199)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~   69 (199)
                      .|.+..++....+......+.......+|+++++            .+.+++|+..|.++  .+|.+..+-..+|.++..
T Consensus       579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~  658 (1018)
T KOG2002|consen  579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE  658 (1018)
T ss_pred             hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence            4666666555333333333334455566776653            34457788888877  889999999999999999


Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHhcCChHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE--QSWAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      .|++.+|..+|.++.+-..++.++|.++|.||+.+|+|..|++.|+.++...  .+++.+...||.++...|.+.+|..+
T Consensus       659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~  738 (1018)
T KOG2002|consen  659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA  738 (1018)
T ss_pred             ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999998888889999999999999999999999999999864  35788999999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          148 FERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       148 ~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      ...++...|.++...++++.+..++...
T Consensus       739 ll~a~~~~p~~~~v~FN~a~v~kkla~s  766 (1018)
T KOG2002|consen  739 LLKARHLAPSNTSVKFNLALVLKKLAES  766 (1018)
T ss_pred             HHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence            9999999999999999999998876643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=2e-13  Score=100.94  Aligned_cols=154  Identities=16%  Similarity=0.045  Sum_probs=82.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ++.|..+...|+.++|+..|-++  .-.+++++++.++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+
T Consensus       528 fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  528 FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence            34444444444445544444444  2233445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      -.+|.+++-...+..|.+.+..-.+|..|....-.++|+.+|+++--+.|+.......++.|+.+.|+|.+|...+
T Consensus       608 ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  608 KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4444444444444444444444444444444444566666666666666666666666677777777777666544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=3.5e-13  Score=92.34  Aligned_cols=145  Identities=19%  Similarity=0.207  Sum_probs=132.9

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      .+....|+.+.|...+...  ..|.+..+....|..+...|++++|+++|+..++-+|.|..++...-.+...+|+-.+|
T Consensus        60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a  139 (289)
T KOG3060|consen   60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA  139 (289)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence            4556677888888888776  56888899999999999999999999999999999999999998888888899999999


Q ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      ++.+...+...+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..++.++..+|..+.
T Consensus       140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN  206 (289)
T KOG3060|consen  140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN  206 (289)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998876443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.54  E-value=8.5e-14  Score=112.61  Aligned_cols=155  Identities=7%  Similarity=-0.092  Sum_probs=106.3

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ..+..+.+.++.|+++.|+..+.++  ..|.++.....++.++...|+.++|+..+++++.-.|........+|.++..+
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE  115 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            4466678888888888888888887  56666434446677777778888888888887733344444445556677777


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |++++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|...+
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQAS  192 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHH
Confidence            888888888888888888777777777777777777777777777777777775443 44444443344443444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.54  E-value=5.6e-14  Score=104.60  Aligned_cols=109  Identities=13%  Similarity=0.039  Sum_probs=103.1

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      ..|...+..|+|++|+..|.++  ..|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.+++.+|++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            4578889999999999999999  78899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ++|+..|++++.++|+++.+...++.|...+
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988886655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.54  E-value=3.5e-13  Score=96.32  Aligned_cols=155  Identities=20%  Similarity=0.138  Sum_probs=119.2

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      ....++|..++..|.+.+|+..|-.+  .+|++-.+++..|.+|...|+-.-|+..+.+++++-|+...+....|.++++
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            34477899999999999999999888  7888888999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcccccH---HHHHH------------HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          104 LGDAWNALKAATRATELEQSWA---EAWIT------------LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~---~~~~~------------lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      +|++++|...|..++..+|++.   ++...            ....+...|++..|+....+.+++.|=+...+...+.|
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC  198 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            9999999999999888887432   12111            12223345666677777777777777666666666677


Q ss_pred             HHHHhhhhhhhh
Q 029105          169 LHLVKRRKHLHL  180 (199)
Q Consensus       169 ~~~~~~~~~a~~  180 (199)
                      |...|+...|..
T Consensus       199 ~i~~~e~k~AI~  210 (504)
T KOG0624|consen  199 YIAEGEPKKAIH  210 (504)
T ss_pred             HHhcCcHHHHHH
Confidence            766666666554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.6e-13  Score=102.57  Aligned_cols=111  Identities=26%  Similarity=0.454  Sum_probs=107.2

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      ....|+..+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++...+.++++|+++..|..+|..+..+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      +|++|+..|.+.|+.+|++.....+|+.++.
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~  115 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYL  115 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhhh
Confidence            9999999999999999999999999999983

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.52  E-value=2.6e-13  Score=101.56  Aligned_cols=156  Identities=16%  Similarity=-0.100  Sum_probs=114.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhccc----HHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----FREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      ...+..+...|++++|...+.++  ..|.+..++.. +..++..|+    ...+...+......+|........+|.++.
T Consensus        47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence            44567778888888888887776  56666655554 444444443    333443333333456666677778888888


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHhhhhhh
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE----EARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~a  178 (199)
                      .+|++++|+..+++++++.|+++.++..+|.++...|++++|+..+++++...|.++    ..+..++.++...|++++|
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999888888899999999999999999999988876433    2456788889999999888


Q ss_pred             hhhcccc
Q 029105          179 HLSGLSN  185 (199)
Q Consensus       179 ~~~~~~~  185 (199)
                      ...+-..
T Consensus       206 ~~~~~~~  212 (355)
T cd05804         206 LAIYDTH  212 (355)
T ss_pred             HHHHHHH
Confidence            7765443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.52  E-value=4.7e-14  Score=111.68  Aligned_cols=162  Identities=12%  Similarity=0.002  Sum_probs=129.9

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ..++++.+....++++.|.+.|...  ..|....++..+|......++..+|...++.++..+..++.++..+|.+++..
T Consensus       498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k  577 (1018)
T KOG2002|consen  498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK  577 (1018)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence            4578899999999999999988887  78888888888887777788888888888888888887777777777665543


Q ss_pred             CC------------------------------------------------HHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105          105 GD------------------------------------------------AWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus       105 ~~------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      .+                                                ++.|++.|.++++.+|.|.-+-..+|.|+.
T Consensus       578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA  657 (1018)
T KOG2002|consen  578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA  657 (1018)
T ss_pred             hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh
Confidence            22                                                778888888888888888888888888888


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ..|++.+|...|.++.+-..++..+|.++|.||..+|+|..|...+-..+..
T Consensus       658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888777777788888888888888888877765544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.52  E-value=6.1e-13  Score=98.71  Aligned_cols=144  Identities=22%  Similarity=0.224  Sum_probs=127.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      +..+...+..|.+++|+..+..+  ..|+++..+...+.+++..++..+|.+.+++++.++|+.+..+.++|..+.+.|+
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence            44456777888888888888877  8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +.+|+..+...+..+|+++..|..||.+|..+|+..+|...+-+..........+...+-.+..+.
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999888888888777666665555544443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=8.1e-13  Score=93.08  Aligned_cols=111  Identities=20%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD---AWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      .+|++++-|..+|.+|+..|+++.|...|.+++++.|+++..+..+|.+++.+.+   -.++...+++++..+|++..+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            7899999999999999999999999999999999999999999999998886543   5788899999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      +.+|..+++.|+|.+|+..++..+...|.+..-.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            9999999999999999999999999988765533

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.51  E-value=1.4e-13  Score=77.33  Aligned_cols=62  Identities=35%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      +|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44455555555555555555555555555555555555555555555555555555555544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.51  E-value=2.6e-13  Score=105.28  Aligned_cols=131  Identities=18%  Similarity=0.079  Sum_probs=97.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            44566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hcCChHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          137 NFGEPDKAIE--SFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       137 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +.|+..-|..  .+..+++++|.++++|+.+|.++...|+.++|...+..+.+
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            7777766666  77777777777777777777777777777777776655544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=4.3e-13  Score=97.66  Aligned_cols=142  Identities=23%  Similarity=0.317  Sum_probs=122.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--c------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--D------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----   90 (199)
                      +-.|.+++-.++.+.|+.+|++.  .            .|.....+...|+-.++.|++..|.++|..+|.++|++    
T Consensus       207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n  286 (486)
T KOG0550|consen  207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN  286 (486)
T ss_pred             HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence            44578888888999999999887  2            34445677889999999999999999999999999987    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      +.+|.++|.+....|+..+|+..++.++.++|....++...|.|+..++++++|++.|+++++...+ .+....+..+..
T Consensus       287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~  365 (486)
T KOG0550|consen  287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQL  365 (486)
T ss_pred             HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999998766 444444444433


Q ss_pred             H
Q 029105          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      .
T Consensus       366 a  366 (486)
T KOG0550|consen  366 A  366 (486)
T ss_pred             H
Confidence            3

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.50  E-value=2.5e-13  Score=76.32  Aligned_cols=65  Identities=28%  Similarity=0.329  Sum_probs=60.6

Q ss_pred             HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH
Q 029105           61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA  125 (199)
Q Consensus        61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  125 (199)
                      +.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++..+|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.50  E-value=8.4e-13  Score=98.78  Aligned_cols=160  Identities=16%  Similarity=0.005  Sum_probs=127.7

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      .....+|..+...|+.+++...+...     ...+..+.....+.++...|++++|...+++++..+|++..++.. +..
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence            33455677788888888876666655     333456677788999999999999999999999999999877765 555


Q ss_pred             HHHcCCH----HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105          101 LLELGDA----WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK  176 (199)
Q Consensus       101 ~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  176 (199)
                      +...|.+    ..+...+......+|..+.++..+|.++..+|++++|+..++++++++|+++.++..++.++...|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            5555544    444444444445677788888899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccc
Q 029105          177 HLHLSGLSND  186 (199)
Q Consensus       177 ~a~~~~~~~~  186 (199)
                      +|...+....
T Consensus       166 eA~~~l~~~l  175 (355)
T cd05804         166 EGIAFMESWR  175 (355)
T ss_pred             HHHHHHHhhh
Confidence            9988655443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.50  E-value=9.6e-13  Score=106.62  Aligned_cols=165  Identities=15%  Similarity=0.137  Sum_probs=135.5

Q ss_pred             ccccCCCCCCchHhhhcchhhhhccchhhhhhcccccchhh--HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQ--LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .+...|..+....  .+..++...|++++|+..++++..|.  ....+..+|.++...|++++|++.|+++++.+|+++.
T Consensus        60 aL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~  137 (822)
T PRK14574         60 ESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD  137 (822)
T ss_pred             HHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            3444555432111  34466677899999999999985444  4455555588999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ++..++..+...++.++|+..+++++..+|.+... ..++.++...++..+|+..++++++.+|++.+++..+..++...
T Consensus       138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        138 LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999986554 55666666678887799999999999999999999999999988


Q ss_pred             hhhhhhhhhc
Q 029105          173 KRRKHLHLSG  182 (199)
Q Consensus       173 ~~~~~a~~~~  182 (199)
                      |-...|.+..
T Consensus       217 ~~~~~a~~l~  226 (822)
T PRK14574        217 RIVEPALRLA  226 (822)
T ss_pred             CCcHHHHHHH
Confidence            8877766544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.48  E-value=8.5e-13  Score=97.70  Aligned_cols=148  Identities=15%  Similarity=0.030  Sum_probs=71.9

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      +.|++-+..|++++|.+.|..+  .+....++++++|..+..+|+.++|+.+|-+.-.+--+++.+++.++.+|..+.+.
T Consensus       495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            3444444455555555554444  22333444555555555555555555555444444444445555555555555555


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      .+|++.+.++..+-|++|..+..+|.+|-+.|+-.+|.+++-...+..|.+.+..-.|+..|....-+++
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek  644 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK  644 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence            5555555555555555555555555555555555555555544444555554444444444444333333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.47  E-value=1.1e-12  Score=101.86  Aligned_cols=130  Identities=25%  Similarity=0.249  Sum_probs=119.8

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      .+..+...+..++|.....++  ..|..+..++..|.++...|++.+|.+.|..++.++|+++.+...+|.++.+.|+..
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~  735 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR  735 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence            366677777778887777666  778899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHH--HHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105          109 NALK--AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       109 ~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      -|..  .+..+++++|.++++|+.+|.++..+|+.++|.++|.-++++++.+|.
T Consensus       736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            8888  999999999999999999999999999999999999999999988764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.2e-12  Score=95.50  Aligned_cols=153  Identities=15%  Similarity=0.033  Sum_probs=123.8

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      +.+|.+++..|++.+|+..|.++  .+|......-..|.++...|++++-.......+..+.....-|+--+...+..++
T Consensus       236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~  315 (564)
T KOG1174|consen  236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKK  315 (564)
T ss_pred             HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhh
Confidence            45566666666666666666666  5666666666666666666666666666666666655555666667777888899


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ++.|+.+.+++|+.+|.+.+++...|.++..+|+.++|+-.|+.+..+.|..-+.+..|..+|...|++++|.-.
T Consensus       316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.47  E-value=2.2e-12  Score=93.16  Aligned_cols=152  Identities=13%  Similarity=-0.009  Sum_probs=125.2

Q ss_pred             hcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--CH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG--DA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--~~  107 (199)
                      ..|.++...|++++|++.+...   .+.+.......++...++++.|.+.++.+-+.+.+........+.+.+..|  ++
T Consensus       107 ~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  107 LAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             HHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence            3477888899999999999876   345667778889999999999999999999998887766666666666666  59


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      .+|..+|+......+.++..+..++.+++.+|++++|...+++++..+|++++++.+++.+...+|+..++...++.
T Consensus       184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            99999999998888889999999999999999999999999999999999999999999999999998555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.46  E-value=4.8e-12  Score=90.02  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             HHHHHHHhhHH-HhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHH
Q 029105           57 ALSFEAQGNNL-AEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWI  129 (199)
Q Consensus        57 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~  129 (199)
                      ....+..+..+ +..|+|++|+..|+..+...|++   +.+++.+|.+++..|++++|+..|++++...|+   .+.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            46677777776 66799999999999999999998   589999999999999999999999999988776   578899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105          130 TLGRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      .+|.++..+|++++|...|+++++..|+...+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999987643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.46  E-value=4.3e-12  Score=87.48  Aligned_cols=153  Identities=13%  Similarity=0.087  Sum_probs=124.1

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKA   98 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la   98 (199)
                      ..+..|...+..|+|.+|+..|..+     ..|..+.+.+.+|.+++..|++.+|+..+++.+...|+++   .+++.+|
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            3467799999999999999999988     4566788999999999999999999999999999999874   6888899


Q ss_pred             HHHHHcC-----------CHHHHHHHHHHHhhcccccHHH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q 029105           99 QVLLELG-----------DAWNALKAATRATELEQSWAEA-----------------WITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus        99 ~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      .+++.+.           ...+|+..|+..+...|++..+                 -+.+|..|...|.+..|+.-++.
T Consensus        87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~  166 (203)
T PF13525_consen   87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY  166 (203)
T ss_dssp             HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred             HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            9876643           3458999999999999975322                 34678889999999999999999


Q ss_pred             HHhcCCCcH---HHHHHHHHHHHHHhhhhhhh
Q 029105          151 ALAIKPDSE---EARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       151 al~~~p~~~---~~~~~l~~~~~~~~~~~~a~  179 (199)
                      +++..|+.+   +++..++.++..+|....+.
T Consensus       167 v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  167 VIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999874   57888999999999887544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=4.2e-12  Score=84.36  Aligned_cols=117  Identities=25%  Similarity=0.383  Sum_probs=105.2

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      .+..+..-|+-+|..|+|++|...|..++.+.|..+     .++.+.|.++.++++++.|+..+.++|+++|.+..++..
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R  173 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER  173 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence            345567789999999999999999999999999763     788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      .+.+|..+..+++|+..|.+++..+|...++...+.++--..
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            999999999999999999999999999888776666554433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.46  E-value=1.4e-12  Score=105.15  Aligned_cols=142  Identities=11%  Similarity=-0.071  Sum_probs=126.9

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH------
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA------  125 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------  125 (199)
                      ..|.+..++..+...+...+++++|+..++.+++.+|+...+++.+|.+++..++++.+.-.  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            57889999999999999999999999999999999999999999999999999988877655  5555544444      


Q ss_pred             -------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhc
Q 029105          126 -------------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVV  192 (199)
Q Consensus       126 -------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  192 (199)
                                   .+++.+|.||-.+|+.++|...|+++++++|+++.+..++|..+... +.++|...+..+.++....
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~  182 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK  182 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence                         89999999999999999999999999999999999999999999999 9999999888888876665


Q ss_pred             CCCC
Q 029105          193 GDKT  196 (199)
Q Consensus       193 ~~~~  196 (199)
                      ..+.
T Consensus       183 kq~~  186 (906)
T PRK14720        183 KQYV  186 (906)
T ss_pred             hcch
Confidence            5443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.45  E-value=3.2e-12  Score=91.48  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=108.5

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|.++.-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSE---EARDDRQTAL  169 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~  169 (199)
                      |.+++.+|++++|+..|.+++..+|.+.   ++...++.+-
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            9999999999999999999999999653   3444444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.44  E-value=9.4e-13  Score=94.21  Aligned_cols=111  Identities=23%  Similarity=0.332  Sum_probs=104.8

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      +...|+.|+.+|.|++|+.||.+++..+|.++..+.+.+..|++++.+..|...|..++.++..+..+|...|.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      ...+|.+.++.++++.|++.+....++.+..
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999998887776665544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.43  E-value=1.7e-11  Score=86.59  Aligned_cols=156  Identities=10%  Similarity=0.006  Sum_probs=129.4

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l   97 (199)
                      ...+..|...+..|++++|+..|+.+  .   .+....+.+.+|.++++.+++++|+..+++.++.+|+++   .+++.+
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            34467789999999999999999988  3   334456678999999999999999999999999999884   778899


Q ss_pred             HHHHHHcC---------------C---HHHHHHHHHHHhhcccccHHH-----------------HHHHHHHHHhcCChH
Q 029105           98 AQVLLELG---------------D---AWNALKAATRATELEQSWAEA-----------------WITLGRAQLNFGEPD  142 (199)
Q Consensus        98 a~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~~~~~  142 (199)
                      |.++...+               +   ...|+..+++.++..|++.-+                 -+..|..|.+.|.+.
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~  192 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV  192 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            98865544               1   357889999999999975321                 246778899999999


Q ss_pred             HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105          143 KAIESFERALAIKPDS---EEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      .|+.-++.+++..|+.   ++++..+..++..+|..++|...
T Consensus       193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~  234 (243)
T PRK10866        193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV  234 (243)
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999999999998875   67889999999999999987663

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=5.9e-12  Score=95.48  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ++.+++++.+++.++.+|+++..+..+|.++...+++++|...|+++++..|++.. +..++.++...|+.++|...+..
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555566666667788888888999999999999999999999999888544 56788899999998888777665


Q ss_pred             ccc
Q 029105          185 NDA  187 (199)
Q Consensus       185 ~~~  187 (199)
                      ...
T Consensus       387 ~l~  389 (398)
T PRK10747        387 GLM  389 (398)
T ss_pred             HHh
Confidence            544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.42  E-value=2.4e-12  Score=98.44  Aligned_cols=149  Identities=16%  Similarity=0.077  Sum_probs=127.7

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN  109 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~  109 (199)
                      ..-.+..+.|...+......  ..|.+++.+...|..+...|+-++|......++..++....+|..+|.++...++|++
T Consensus        14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e   93 (700)
T KOG1156|consen   14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE   93 (700)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence            34455666777777766666  6788888888899999999999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      |+.+|+.|+.+.|+|...|..++....++++++.....-.+.++..|.....|..++.++...|++..|..
T Consensus        94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888899999988889999999888888887765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.41  E-value=3.7e-11  Score=78.55  Aligned_cols=122  Identities=18%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHHHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITLGRAQ  135 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~  135 (199)
                      .........++...+...++..+..+|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   +.+.+.+|.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~   95 (145)
T PF09976_consen   16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL   95 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            33333445677777777777777777766   3556667777777777777777777777765443   34566777777


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ...|++++|+..++. +.-.+..+.++..+|.++...|++++|...+..
T Consensus        96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777777755 233344456667777777777777777665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.41  E-value=1.1e-11  Score=81.05  Aligned_cols=116  Identities=24%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             hhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCH
Q 029105           36 AELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDA  107 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~  107 (199)
                      ...++...+...+..+     ..+....+.+.+|.+++..|++++|...|+.++...|+.   +.+...+|.++...|++
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            3456666666555555     333457788899999999999999999999999987665   46788999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      ++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999976 34445567788999999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.41  E-value=5.7e-12  Score=84.45  Aligned_cols=116  Identities=18%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             HhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChH
Q 029105           68 AEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~  142 (199)
                      +-...+..+...+...+...+.+  ..+++.+|.++..+|++++|+..|++++.+.|+   .+.++.++|.++...|+++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence            34455666666776665565555  577899999999999999999999999988765   3458999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HHhhhhhhhhhcc
Q 029105          143 KAIESFERALAIKPDSEEARDDRQTALH-------LVKRRKHLHLSGL  183 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~-------~~~~~~~a~~~~~  183 (199)
                      +|+..+++++.++|.....+.+++.++.       .+|++++|...+.
T Consensus        90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            9999999999999999999999999999       6667766554443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=8.5e-12  Score=88.46  Aligned_cols=157  Identities=13%  Similarity=0.031  Sum_probs=134.1

Q ss_pred             hhcchhhhhccchhhhhhccccc-c-----hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-D-----AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      .-+|+.+.+.|+.+.|+..-+.. .     ......++..+|.-|+..|-++.|...|...++....-..+...|..+|.
T Consensus        73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ  152 (389)
T COG2956          73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ  152 (389)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence            35688899999999999876665 2     22346678889999999999999999999988876666788999999999


Q ss_pred             HcCCHHHHHHHHHHHhhccccc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          103 ELGDAWNALKAATRATELEQSW-----AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      ...+|++|++..++...+.+..     +..+..++..+....+.+.|+..+.++++.+|++..+-..+|.+....|+++.
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence            9999999999999999988764     45677888888889999999999999999999999999999999999999999


Q ss_pred             hhhhcccc
Q 029105          178 LHLSGLSN  185 (199)
Q Consensus       178 a~~~~~~~  185 (199)
                      |.+..-+.
T Consensus       233 AV~~~e~v  240 (389)
T COG2956         233 AVEALERV  240 (389)
T ss_pred             HHHHHHHH
Confidence            88755433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.41  E-value=1e-12  Score=101.61  Aligned_cols=133  Identities=20%  Similarity=0.114  Sum_probs=117.0

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      +.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++|...+.++|++..+|.+++..|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            34555566666777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      ..++-.+|...+.++++.+-.+...|-|.-.+....|.+++|..++.+-....
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            99999999999999999998889999999999999999999888776655543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.39  E-value=6.1e-12  Score=97.43  Aligned_cols=158  Identities=19%  Similarity=0.127  Sum_probs=131.9

Q ss_pred             CCCchHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH---
Q 029105           22 LPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA---   98 (199)
Q Consensus        22 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la---   98 (199)
                      .|..+....++..+...|-...|+..|.+      +..|-....||...|+..+|.....+-++ .|.++..|..+|   
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL  467 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence            34556666788999999999999999865      66677778888888888888888888887 444454444443   


Q ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105           99 -------------------------QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus        99 -------------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                                               ......++|+++...++..++++|-....|+.+|.+..+.++++.|.++|..++.
T Consensus       468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt  547 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT  547 (777)
T ss_pred             cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence                                     3344568899999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          154 IKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       154 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ++|++.++|.+++.+|..+++..+|......+.
T Consensus       548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl  580 (777)
T KOG1128|consen  548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL  580 (777)
T ss_pred             cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence            999999999999999999999998877555443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.39  E-value=9.4e-12  Score=74.69  Aligned_cols=93  Identities=24%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccc
Q 029105          173 KRRKHLHLSGLSN  185 (199)
Q Consensus       173 ~~~~~a~~~~~~~  185 (199)
                      |++++|.......
T Consensus        82 ~~~~~a~~~~~~~   94 (100)
T cd00189          82 GKYEEALEAYEKA   94 (100)
T ss_pred             HhHHHHHHHHHHH
Confidence            9999987755433

>TIGR00540 hemY_coli hemY protein

Probab=99.38  E-value=1.1e-11  Score=94.30  Aligned_cols=139  Identities=12%  Similarity=-0.003  Sum_probs=115.2

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHhhcccccH--HHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLH--EQKAQVLLELGDAWNALKAATRATELEQSWA--EAWIT  130 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~  130 (199)
                      +++..+..++..+...|++++|...++++++..|++....  ..........++.+.+++.++++++.+|+++  .....
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s  340 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA  340 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            3677888899999999999999999999999999987531  2333334456889999999999999999999  88899


Q ss_pred             HHHHHHhcCChHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105          131 LGRAQLNFGEPDKAIESFE--RALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  194 (199)
                      +|.++...|++++|.++|+  .+++..|+... ...++.++..+|+.++|...+..+.......+|
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~  405 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD  405 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999  68888898666 559999999999999998877665554444333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.5e-11  Score=85.63  Aligned_cols=108  Identities=21%  Similarity=0.151  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 029105           73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFE  149 (199)
Q Consensus        73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~  149 (199)
                      .+.-+.-++.-+..+|+|..-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.++..+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4556667788889999999999999999999999999999999999999999999999999887654   3478999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          150 RALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      +++..+|.+..+...|+..+...|++.+|..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~  248 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAA  248 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999999999999765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1e-11  Score=90.58  Aligned_cols=128  Identities=19%  Similarity=0.111  Sum_probs=110.8

Q ss_pred             hhcchhhhhccchhhhhhccccc---------chh--------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF---------DAK--------QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      -..|+.+++.|+|..|...|.++         .++        ....++.+++.|+..+++|..|+..+.++|..+|+|.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~  291 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV  291 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            46699999999999999998886         111        1234678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCC
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK-AIESFERALAIKP  156 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~p  156 (199)
                      .+++..|.++..+|+|+.|+..|++++++.|+|-.+...+..+..+...+.+ ..+.|..++..-+
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999988887766654 4677777776544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.36  E-value=7.8e-12  Score=70.85  Aligned_cols=66  Identities=24%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            455666666666666666666666666666666666666666666666666666666655555543

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.35  E-value=2.2e-11  Score=94.45  Aligned_cols=134  Identities=13%  Similarity=0.088  Sum_probs=92.6

Q ss_pred             hHhhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhc--------ccHHHHHHHHHHHHcc--CCCc
Q 029105           26 QQDQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED--------GKFREALGKWEAALNL--RPEN   90 (199)
Q Consensus        26 ~~~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~l~~--~~~~   90 (199)
                      ...+..|..+...+   ....|+..|+++  .+|+++.++..++.++...        ++...+.....+++.+  +|.+
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~  419 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL  419 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence            33344455554433   356777777777  6777777777766666443        2334555555665553  6666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      +.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|+..|++++.++|.++.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            777777777777788888888888888888874 677888888888888888888888888888887664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.35  E-value=3.5e-11  Score=91.27  Aligned_cols=127  Identities=11%  Similarity=0.057  Sum_probs=98.2

Q ss_pred             hhcchhhhhccchhhhhhccccc-chhhHHHHHHHH-hhHHHhcccHHHHHHHHHHHHccCCCcHHH-HHHHHHHHHHcC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-DAKQLALSFEAQ-GNNLAEDGKFREALGKWEAALNLRPENAVL-HEQKAQVLLELG  105 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~~  105 (199)
                      ...|......|++++|.+...+. ..++.+...+.+ +......|+++.|...+.++.+.+|++... ....+.++...|
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g  167 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN  167 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence            34577777789999888777665 222334444555 455588999999999999999988887533 334588889999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      ++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999886666665443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.35  E-value=1.6e-11  Score=82.58  Aligned_cols=110  Identities=18%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chh---hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAK---QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL  101 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  101 (199)
                      ..+.+|..+...|++++|+..|.++  ..|   ..+.++..+|.++...|++++|+..+.+++...|.+...+..+|.++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3477899999999999999999988  222   24678999999999999999999999999999999999999999999


Q ss_pred             HHcCC--------------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105          102 LELGD--------------AWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus       102 ~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      ...|+              +++|++++++++..+|++   +...+..+...|
T Consensus       117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~  165 (172)
T PRK02603        117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG  165 (172)
T ss_pred             HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence            99888              577888888888888876   333444444433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.35  E-value=1.7e-11  Score=94.23  Aligned_cols=157  Identities=14%  Similarity=0.013  Sum_probs=135.1

Q ss_pred             hhhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105           35 GAELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  113 (199)
                      .+...+++.|...+.++ .......+|+.-+.....+++.++|+..++++++..|+...+|+.+|+++-.+++.+.|...
T Consensus       628 e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  628 EFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34455677777777666 44456778888888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105          114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV  191 (199)
Q Consensus       114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  191 (199)
                      |...++..|+.+..|..++.+-...|+.-.|...++++...+|.+...|......-.+.|..+.|....-.+++.+..
T Consensus       708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999999999999999999999998887766555554433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.35  E-value=6.3e-11  Score=74.03  Aligned_cols=96  Identities=26%  Similarity=0.154  Sum_probs=87.3

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITL  131 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  131 (199)
                      .+++.+|.++-..|+.++|+..|++++......   ..++..+|.++...|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578899999999999999999999999976544   578999999999999999999999999999888   88888999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 029105          132 GRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~  153 (199)
                      +.++...|+.++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.33  E-value=1.2e-10  Score=90.01  Aligned_cols=153  Identities=16%  Similarity=0.059  Sum_probs=98.8

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG--  105 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--  105 (199)
                      ....++...|++++|+.++...  .-.+...++-..|.++...|++++|...|...+..+|++...+..+..+.....  
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence            3456667778888888877665  444556677778888888888888888888888888887777776666652221  


Q ss_pred             ---CHHHHHHHHHHH-----------------------------------------------------------------
Q 029105          106 ---DAWNALKAATRA-----------------------------------------------------------------  117 (199)
Q Consensus       106 ---~~~~A~~~~~~a-----------------------------------------------------------------  117 (199)
                         ..+.-...|++.                                                                 
T Consensus        89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~  168 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE  168 (517)
T ss_pred             ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence               111111111110                                                                 


Q ss_pred             ----hhcc------------ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          118 ----TELE------------QSW--AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       118 ----l~~~------------p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                          ++..            |..  .-+++.++..|-..|++++|+.++++++...|+.++.+...|.++...|++.+|.
T Consensus       169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa  248 (517)
T PF12569_consen  169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA  248 (517)
T ss_pred             HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence                0000            000  1234667777777888888888888888888888888888888888888877776


Q ss_pred             hhc
Q 029105          180 LSG  182 (199)
Q Consensus       180 ~~~  182 (199)
                      ...
T Consensus       249 ~~~  251 (517)
T PF12569_consen  249 EAM  251 (517)
T ss_pred             HHH
Confidence            544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.33  E-value=7.1e-12  Score=71.01  Aligned_cols=68  Identities=29%  Similarity=0.312  Sum_probs=62.1

Q ss_pred             HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      ++..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998887776653

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.32  E-value=5e-11  Score=75.08  Aligned_cols=97  Identities=18%  Similarity=0.080  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc---HHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS---EEARDD  164 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  164 (199)
                      +..++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4568899999999999999999999999998876   5789999999999999999999999999998885   678999


Q ss_pred             HHHHHHHHhhhhhhhhhcccccc
Q 029105          165 RQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++.++..+|++++|...+....+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHH
Confidence            99999999999998876655444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.32  E-value=4.3e-12  Score=75.05  Aligned_cols=79  Identities=18%  Similarity=0.207  Sum_probs=70.4

Q ss_pred             HcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          103 ELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      .+|+|+.|+..+++++..+|.  +...++.+|.|++..|++++|+..+++ ...+|.+......+|.|+..+|++++|..
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  567788899999999999999999999 88899998999999999999999999887


Q ss_pred             hc
Q 029105          181 SG  182 (199)
Q Consensus       181 ~~  182 (199)
                      .+
T Consensus        80 ~l   81 (84)
T PF12895_consen   80 AL   81 (84)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.32  E-value=1.8e-11  Score=70.33  Aligned_cols=65  Identities=35%  Similarity=0.568  Sum_probs=37.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105           99 QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus        99 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      .++...+++++|+.++++++.++|+++..+..+|.++..+|++++|+..++++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555554433

>PRK11906 transcriptional regulator; Provisional

Probab=99.30  E-value=1.1e-10  Score=87.14  Aligned_cols=159  Identities=8%  Similarity=-0.085  Sum_probs=124.1

Q ss_pred             hhcchhhhhccc---hhhhhhccccc-----chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEK---NDDNNEHQEPF-----DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~---~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      +..|...+..+.   ...|+..|.++     .+|..+.++..++.|++..         ....+|.+..+++++++|.|+
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            344555544333   35666677666     5788899999999988765         345678899999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-HH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA-LH  170 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~  170 (199)
                      .++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+..-.|+.++|+..++++++++|....+-...-.+ ..
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999865442222222 22


Q ss_pred             HHhhhhhhhhhcccccc
Q 029105          171 LVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       171 ~~~~~~~a~~~~~~~~~  187 (199)
                      .-...+++...++...+
T Consensus       419 ~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        419 VPNPLKNNIKLYYKETE  435 (458)
T ss_pred             cCCchhhhHHHHhhccc
Confidence            22345566665554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.30  E-value=2.3e-11  Score=69.89  Aligned_cols=71  Identities=30%  Similarity=0.324  Sum_probs=65.4

Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +..+++..+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35688999999999999999999999999999999999999999999999999999999998887665543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.30  E-value=1.8e-10  Score=86.14  Aligned_cols=118  Identities=16%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP  141 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  141 (199)
                      .+-..+...++++.|+..+++..+.+|+   +...++.++...++-.+|++.+.+++...|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3444555678999999999999988875   4567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +.|+...++++...|.+...|..|+.+|..+|++++|....
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999999999987543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.29  E-value=2.5e-11  Score=96.96  Aligned_cols=153  Identities=17%  Similarity=0.092  Sum_probs=113.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLEL  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~  104 (199)
                      ..+|.+|...-+...|...|.++  .++.+..+....+..+....+++.|....-.+-+..|-.  ...|..+|..|.+.
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea  575 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA  575 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence            44566666555556666666666  556666666666666666666666666544444444432  24455677777778


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ++...|+..|+.+++.+|.+..+|..+|.+|...|.+..|++.|.++..++|.+.-..+..+.+...+|++.++...
T Consensus       576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            88888888889999999999999999999999999999999999999999999888888888888888988887653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.29  E-value=2.3e-10  Score=79.98  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITL  131 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  131 (199)
                      .-.+..+.-++..|+|..|...|..-+...|+.   +.++++||.+++.+|+|+.|...|..+++..|+   -|++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            338999999999999999999999999999987   589999999999999999999999999998775   56889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                      |.+...+|+.++|...|+++++..|+...+...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999998876543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.28  E-value=1.8e-10  Score=73.25  Aligned_cols=106  Identities=22%  Similarity=0.234  Sum_probs=92.6

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI  129 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  129 (199)
                      .+..++..|...+..|+|.+|++.|+.+....|..   ..+...++.+++..+++++|+..+++-++++|.++.   +++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            35678889999999999999999999999888765   478899999999999999999999999999987654   688


Q ss_pred             HHHHHHHhcCC---------------hHHHHHHHHHHHhcCCCcHHH
Q 029105          130 TLGRAQLNFGE---------------PDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       130 ~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~  161 (199)
                      ..|.+++.+..               ...|...|++.++..|++.-+
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            89999988876               788999999999999987644

>PRK15331 chaperone protein SicA; Provisional

Probab=99.28  E-value=3.6e-11  Score=78.06  Aligned_cols=105  Identities=8%  Similarity=-0.128  Sum_probs=95.0

Q ss_pred             HHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105           83 ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus        83 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      +..+.++.....+..|.-++..|++++|...|+-+...+|.+++.|..||.|+..+++|++|+..|..+..++++++...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34455666678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccc
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +..|.|+..+|+...|...+....+
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999876554443

>TIGR00540 hemY_coli hemY protein

Probab=99.28  E-value=6e-10  Score=84.99  Aligned_cols=124  Identities=12%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAW  108 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~  108 (199)
                      |...+..|+++.|.+...+.  ..|.....+...|.+...+|+++.|...+.++.+..|++. .+....+.++...|+++
T Consensus        91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence            44455555555555555444  2333333344445555555555555555555555555443 23333455555555555


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .|...+++.++..|+++.++..++.++...|++++|+..+.+..+..
T Consensus       171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            55555555555555555555555555555555555555555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.7e-10  Score=84.57  Aligned_cols=148  Identities=15%  Similarity=0.050  Sum_probs=67.8

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH-HHH-HHcCC
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA-QVL-LELGD  106 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~-~~~~~  106 (199)
                      .|..+...|+.++|+-.|+.+  ..|...+.+..+..+|...|.+.+|....+.++...|.++..+..+| .++ ..-.-
T Consensus       340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~  419 (564)
T KOG1174|consen  340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM  419 (564)
T ss_pred             ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh
Confidence            466666666666666666665  55666666666666666666554444433333333222222222221 111 01111


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      -++|...+++++++.|.+..+-..++..+...|.+.+++..+++.+...|+ -..+..||.++...+.+.+|.
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHH
Confidence            233333444444444444444444444444444444444444444444443 223444444444444444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.26  E-value=2.9e-10  Score=88.34  Aligned_cols=132  Identities=14%  Similarity=0.043  Sum_probs=109.0

Q ss_pred             HHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHhhc--cc
Q 029105           56 LALSFEAQGNNLAEDG---KFREALGKWEAALNLRPENAVLHEQKAQVLLELG--------DAWNALKAATRATEL--EQ  122 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p  122 (199)
                      .+..++..|..++..+   ++..|+.+|+++++++|+++.++-.++.++....        +...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            3445666777776554   4889999999999999999999999888876542        244566666776664  77


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ..+.++..+|..+...|++++|...+++++.++|+ ..++..+|.++...|+.++|...+..++..
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            78889999999999999999999999999999994 889999999999999999999888766543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.26  E-value=1.3e-10  Score=89.10  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=117.4

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      ...++..+.-.+..++|...+...++.+...|.+++..-..|..+..+|+-++|......+++.++.+...|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34567777778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ...+|++|+++|+.|+.++|+|..++..++....++++++-....-
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999999999999999999999999999988755433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.25  E-value=1.2e-10  Score=87.05  Aligned_cols=116  Identities=21%  Similarity=0.188  Sum_probs=103.4

Q ss_pred             hhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 029105           35 GAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA  114 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  114 (199)
                      +...++++.|+..+++.... ++++...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+.+.
T Consensus       179 l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA  257 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA  257 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            34467889999998887221 14566778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105          115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      ++++...|++...|+.|+.+|..+|+++.|+..+..+
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999777644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.25  E-value=1.8e-10  Score=75.53  Aligned_cols=105  Identities=26%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC--
Q 029105           73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGD----------AWNALKAATRATELEQSWAEAWITLGRAQLNFGE--  140 (199)
Q Consensus        73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--  140 (199)
                      |+.|.+.++.....+|.+++.+++.|..+.++.+          +++|+.-|++++.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            7889999999999999999999999998887644          5678888999999999999999999999987654  


Q ss_pred             ---------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          141 ---------PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       141 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                               |++|..+|++++..+|++...+..|..+...-+-+.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e  132 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHME  132 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHH
Confidence                     7889999999999999999888877766543333333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.24  E-value=1.9e-10  Score=77.55  Aligned_cols=109  Identities=18%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+...+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.+++.+|..+...|+|+.|.+.|...++++|.+--++.+.
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      |..+..-|++.-|.+.+.+-.+.+|++|-
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.21  E-value=1.3e-09  Score=77.05  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=90.6

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL---HEQKAQVLLELGDAWNALKAATRATELEQSW---AEAW  128 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  128 (199)
                      ..+..++..|..++..|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            356778899999999999999999999999999988644   4899999999999999999999999998875   4578


Q ss_pred             HHHHHHHHhcC---------------C---hHHHHHHHHHHHhcCCCcH
Q 029105          129 ITLGRAQLNFG---------------E---PDKAIESFERALAIKPDSE  159 (199)
Q Consensus       129 ~~lg~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~  159 (199)
                      +.+|.++..++               +   ..+|+..|++.++..|+..
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            99998875544               1   3578899999999999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.21  E-value=1.1e-10  Score=87.03  Aligned_cols=70  Identities=21%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL---HEQKAQVLLELGDAWNALKAATRATELE  121 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~  121 (199)
                      .+|+++.+++++|.+|+..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            578889999999999999999999999999999999998854   9999999999999999999999999873

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.18  E-value=1.6e-10  Score=92.54  Aligned_cols=147  Identities=17%  Similarity=0.107  Sum_probs=130.0

Q ss_pred             chhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           40 KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        40 ~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      +...|...+.++  .++..+.++..+|.+|+..-+...|..+|.++.++++.+..++-..+..|.+..+++.|..++-.+
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            345566666555  778888999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          118 TELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       118 l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      -+..|-  ....|..+|..|.+.++...|+..|+.+++.+|.+..+|..+|.+|...|++.-|.+.+-.+.
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            777774  334677799999999999999999999999999999999999999999999999888775443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=9.8e-10  Score=79.57  Aligned_cols=130  Identities=16%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      -.+++.+++++.|.+.+...  .+.+..-+....+.+.+..|  ++.+|...|+......+.++..+..++.|+..+|+|
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~  217 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY  217 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence            46788899999999888776  34444444445555555555  689999999999988888899999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCcHHH
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEP-DKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~  161 (199)
                      ++|...+.+++..+|+++.++.+++.+...+|+. +.+.+.+.+....+|+++..
T Consensus       218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            9999999999999999999999999999999999 56677888888899998754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK11906 transcriptional regulator; Provisional

Probab=99.17  E-value=8.5e-10  Score=82.60  Aligned_cols=129  Identities=12%  Similarity=-0.017  Sum_probs=112.1

Q ss_pred             HHHHHhhHHHhcc---cHHHHHHHHHHHH---ccCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcccc
Q 029105           59 SFEAQGNNLAEDG---KFREALGKWEAAL---NLRPENAVLHEQKAQVLLEL---------GDAWNALKAATRATELEQS  123 (199)
Q Consensus        59 ~~~~~~~~~~~~~---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~  123 (199)
                      ..+..|...+..+   ..+.|+.+|.+++   .++|+.+.++..++.|++..         ....+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4466777766554   3467889999999   99999999999999998754         3356788999999999999


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|......+..
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999998876655444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=8.2e-10  Score=69.06  Aligned_cols=95  Identities=26%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---cHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD---SEEARDDR  165 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l  165 (199)
                      .+++.+|.++-..|+.++|+..|++++.....   -..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46789999999999999999999999997543   3568999999999999999999999999999888   78888999


Q ss_pred             HHHHHHHhhhhhhhhhccccc
Q 029105          166 QTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       166 ~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +.++...|+.++|....+...
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999998877554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.16  E-value=3.5e-09  Score=73.10  Aligned_cols=104  Identities=24%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH---HHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWA---EAWI  129 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  129 (199)
                      .+..++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|++..|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            56789999999999999999999999999998876   58899999999999999999999999999988754   5788


Q ss_pred             HHHHHHHhcC-----------ChHHHHHHHHHHHhcCCCcH
Q 029105          130 TLGRAQLNFG-----------EPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       130 ~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~  159 (199)
                      .+|.+++.+.           ...+|+..|+..+...|+++
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            9999876543           34589999999999999874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.16  E-value=4.3e-09  Score=65.43  Aligned_cols=103  Identities=30%  Similarity=0.329  Sum_probs=91.8

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----cHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS----WAEAWITLG  132 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg  132 (199)
                      ...+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|+..+++++++...    --.++...|
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg  122 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG  122 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            4456677888999999999999999999999999999999999999999999999999999998643    345789999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      .+|..+|+.+.|...|+.+-++.....
T Consensus       123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  123 LLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            999999999999999998888765543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.15  E-value=1.5e-10  Score=67.38  Aligned_cols=64  Identities=30%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ..++.++|.++..+|++++|+.+|++++.+.       |....++.++|.++..+|++++|+.++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455555555555555555555555555431       122334555555555555555555555555543

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.15  E-value=2.5e-10  Score=92.47  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=107.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---------------
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---------------   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---------------   91 (199)
                      ..+...+...+++++|+..+...  ..|+....++.+|.++++.+++.++...  .++...+.+.               
T Consensus        35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~  112 (906)
T PRK14720         35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY  112 (906)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence            34567777899999999999877  8899999999999999999988887766  6666655555               


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           92 ----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        92 ----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                          .+++.+|.||-++|++++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++..
T Consensus       113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence                89999999999999999999999999999999999999999999988 999999888888765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=4.5e-10  Score=76.68  Aligned_cols=98  Identities=23%  Similarity=0.279  Sum_probs=92.4

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      ..-+...|..++....|..|+.+|.++|.++|..+..+.+.+.|+++.++++.+...+.++++++|+....++.+|.+..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            44566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 029105          137 NFGEPDKAIESFERALAI  154 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~  154 (199)
                      ....|++|+..++++..+
T Consensus        90 ~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   90 QSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             hhccccHHHHHHHHHHHH
Confidence            999999999999999655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.13  E-value=1.1e-09  Score=78.14  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=88.9

Q ss_pred             hHhhhcchhh-hhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHH
Q 029105           26 QQDQEHGLSG-AELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQ   96 (199)
Q Consensus        26 ~~~~~~g~~~-~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~   96 (199)
                      ...++.+..+ +..|+|++|+..|..+  ..|+.   +.+++.+|.+++..|++++|+..|++++...|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4446666665 5579999999999888  44544   6899999999999999999999999999988875   689999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      +|.++...|++++|...|+++++..|+...+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            99999999999999999999999999877543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.12  E-value=2.8e-09  Score=82.46  Aligned_cols=124  Identities=13%  Similarity=0.038  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      |++.++|+.-..+.+...+++.|...|.++....|. ..+|+--+.+...+++.++|+..++++++..|+.+..|..+|+
T Consensus       615 pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQ  693 (913)
T ss_pred             CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhH
Confidence            333333443334444444444444444444333332 3334444444444455555555555555555555555555555


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      ++.++++.+.|...|...++..|+.+..|..|+.+-...|..-+|
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA  738 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA  738 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence            555555555555555555555555555555555554444444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.11  E-value=8.6e-09  Score=68.14  Aligned_cols=124  Identities=20%  Similarity=0.205  Sum_probs=108.6

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHc-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALN-LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGR  133 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~  133 (199)
                      ..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|.  .++....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            44567899999999999999999999875 56788899999999999999999999999999999884  6777889999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ++..+|.+.+|...|+.++...|+ +.+....+..+..+|+.+++...
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence            999999999999999999999987 67777888888888877776543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.10  E-value=1.1e-09  Score=81.83  Aligned_cols=71  Identities=21%  Similarity=0.098  Sum_probs=67.4

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105           85 NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA---WITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus        85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      ..+|+++..++++|..++.+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999999999855   9999999999999999999999999973

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.10  E-value=1.3e-08  Score=70.71  Aligned_cols=156  Identities=17%  Similarity=0.089  Sum_probs=129.5

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l   97 (199)
                      ...++.|...++.|++++|+..|..+     ..|-...+...++.++++.+++++|+..+++-+.+.|.++   .+++..
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk  114 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK  114 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence            44578899999999999999999988     4455678999999999999999999999999999999875   567788


Q ss_pred             HHHHHHcCC--------HHHHHHHHHHHhhcccccHH-----------------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105           98 AQVLLELGD--------AWNALKAATRATELEQSWAE-----------------AWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        98 a~~~~~~~~--------~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      |.+++..=+        ..+|+..++..+...|++.-                 --..+|..|.+.|.+-.|+.-++.++
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~  194 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL  194 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            888765322        56788889999999887421                 12467888999999999999999999


Q ss_pred             hcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105          153 AIKPDS---EEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       153 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      +..|+.   .+++..+..+|..+|-.++|...
T Consensus       195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         195 ENYPDTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             hccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            987765   46788888999999999888753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.10  E-value=1.9e-09  Score=78.23  Aligned_cols=152  Identities=18%  Similarity=0.096  Sum_probs=110.2

Q ss_pred             cchhhhhccchhhhhhccccc-------chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--Cc----HHHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF-------DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--EN----AVLHEQ   96 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~   96 (199)
                      -|..+...+++++|...|.++       .++ .....+...+.++... ++++|+.+|++++.+.-  ++    ..++..
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~  119 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE  119 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            377888889999999998887       223 3345555666665554 99999999999987632  11    478899


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-------HHHH
Q 029105           97 KAQVLLEL-GDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-------EEAR  162 (199)
Q Consensus        97 la~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~  162 (199)
                      +|.+|... |++++|++.|++|+.+...      ....+..+|.++..+|+|++|+..|+++....-++       ...+
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            99999998 9999999999999987432      23467889999999999999999999998754221       1345


Q ss_pred             HHHHHHHHHHhhhhhhhhhcc
Q 029105          163 DDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      ...+.|+...|+.-.|....-
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~  220 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALE  220 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHH
Confidence            667778888888877765443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.10  E-value=9.6e-10  Score=69.95  Aligned_cols=102  Identities=11%  Similarity=0.099  Sum_probs=90.2

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l   97 (199)
                      ...+..|...++.|+|++|++.++.+     -.+-...+.+.++.+++..+++++|+..+++.++++|.++   .+++..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            45577899999999999999999888     4455678899999999999999999999999999999885   788999


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHhhcccccHHH
Q 029105           98 AQVLLELGD---------------AWNALKAATRATELEQSWAEA  127 (199)
Q Consensus        98 a~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~  127 (199)
                      |.+++.+..               ...|...|++++...|++.-+
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999877               889999999999999987543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.10  E-value=4.4e-10  Score=65.40  Aligned_cols=69  Identities=23%  Similarity=0.292  Sum_probs=59.4

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNL----RPE---NAVLHEQKAQVLLELGDAWNALKAATRATELE  121 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  121 (199)
                      +|..+.++..+|.++...|++++|+.+|++++.+    .++   ...++.++|.++..+|++++|++++++++++.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3678889999999999999999999999999965    122   25789999999999999999999999999864

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=5.5e-09  Score=75.63  Aligned_cols=143  Identities=15%  Similarity=0.021  Sum_probs=82.6

Q ss_pred             hhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105           35 GAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (199)
                      +....+|..|+..++-.   ...+....-.-+|.|+++.|+|++|+..|.-+...+..+...+.+++.|++..|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            34445666666654433   222223344456777777777777777777776665556677777777777777776666


Q ss_pred             HHHHHHhhc--------------cc------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105          112 KAATRATEL--------------EQ------------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus       112 ~~~~~al~~--------------~p------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      ....++-..              +.            +..+-...++.++...-.|++|++.|.+++.-+|+....-..+
T Consensus       112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~  191 (557)
T KOG3785|consen  112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM  191 (557)
T ss_pred             HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence            655443221              00            0111223445555555566666666666666666666666666


Q ss_pred             HHHHHHHhhhhh
Q 029105          166 QTALHLVKRRKH  177 (199)
Q Consensus       166 ~~~~~~~~~~~~  177 (199)
                      +.||.++.-++-
T Consensus       192 ALCyyKlDYydv  203 (557)
T KOG3785|consen  192 ALCYYKLDYYDV  203 (557)
T ss_pred             HHHHHhcchhhh
Confidence            666666655443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=2.6e-09  Score=75.60  Aligned_cols=154  Identities=16%  Similarity=0.018  Sum_probs=128.6

Q ss_pred             hhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105           35 GAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      +.+..+|.+|++.....  ..|.+-..+..+|.||+...+|..|..+|++.-.+.|.........+..+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            36677899999887655  6676777899999999999999999999999999999999988899999999999888876


Q ss_pred             HHHHHhh----------c--------------------cc--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105          113 AATRATE----------L--------------------EQ--SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       113 ~~~~al~----------~--------------------~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      .......          +                    -|  +......+.|.+.++.|+++.|++-|+.+++....++-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            6533222          1                    13  35567788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          161 ARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       161 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .-++++.++...+++..|.+..-.-.++
T Consensus       180 lAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999988755444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=2.2e-09  Score=71.65  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             cchhhhhccchhhhhhccccc-------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF-------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      -|+-++..|+|.+|...|..+       ......-.+.+.|.+++.++.++.|+..+.++|+++|....++...|.+|-+
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            488899999999999988877       2223455677899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105          104 LGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +.+|++|+..|.++++.+|....+.-....
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            999999999999999999987665544443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.04  E-value=7e-10  Score=82.77  Aligned_cols=116  Identities=23%  Similarity=0.385  Sum_probs=107.8

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ..-..+...+..+.|+.|+..|.++++++|+.+.++-+.+..+.+.+++..|+..+.++++.+|....+++..|.+.+.+
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34456777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          139 GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       139 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      +.+.+|...|+....+.|+++.+...+..|-....+
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888765544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.04  E-value=2.1e-10  Score=84.25  Aligned_cols=155  Identities=17%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGK   79 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~   79 (199)
                      ..++|+.+--+|.|++|+..+.+-        +.-....+++++|.+|...|+                    ++.|+++
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f  177 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF  177 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence            356677777777777776654433        222345666777777665543                    2334444


Q ss_pred             HHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHH
Q 029105           80 WEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        80 ~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      |..-+++....      ..++-++|..|+..|+|+.|+..-+.-+.+...      .-.++.++|.|+.-+|+++.|+++
T Consensus       178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh  257 (639)
T KOG1130|consen  178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH  257 (639)
T ss_pred             HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence            44444332111      244555666666666666666555555544322      123555666666666666666666


Q ss_pred             HHHHHhcC----CC--cHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          148 FERALAIK----PD--SEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       148 ~~~al~~~----p~--~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |+..+.+.    ..  .+..-+.||..|..+.++.+|....
T Consensus       258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh  298 (639)
T KOG1130|consen  258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH  298 (639)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            65544331    11  1233445555555555555554433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.00  E-value=3.9e-08  Score=76.40  Aligned_cols=128  Identities=16%  Similarity=0.010  Sum_probs=111.2

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      .++++.++..|-..|++++|+++++++|...|..++.++..|.++-+.|++.+|...++.+-.+|+.+--.....+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999998888888889999


Q ss_pred             hcCChHHHHHHHHHHHhcCC--Cc-------HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          137 NFGEPDKAIESFERALAIKP--DS-------EEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      +.|++++|...+..-.+.+.  ..       .......|.++.+.|++..|..-+..
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~  330 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA  330 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999887665542  11       12345678899999999998875543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=4.5e-09  Score=71.08  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=114.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      .+.|..|-..|-..-|.-.|.++  ..|..+.+++.+|.-+...|+|+.|.+.|+..++++|....++.+.|..++.-|+
T Consensus        69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR  148 (297)
T COG4785          69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  148 (297)
T ss_pred             HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence            45566777777777777777777  8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHH--HHH--------------HHHHHH--------------HhcCChHHHHHHHHHHHhcCC
Q 029105          107 AWNALKAATRATELEQSWAE--AWI--------------TLGRAQ--------------LNFGEPDKAIESFERALAIKP  156 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~--~~~--------------~lg~~~--------------~~~~~~~~A~~~~~~al~~~p  156 (199)
                      |.-|.+.+.+-.+.+|++|-  .|.              ++..-+              +.+|+..+ ...++++..-..
T Consensus       149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~  227 (297)
T COG4785         149 YKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADAT  227 (297)
T ss_pred             hHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhcc
Confidence            99999999888888887652  121              111111              12233321 122333333333


Q ss_pred             Cc-------HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          157 DS-------EEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       157 ~~-------~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      ++       .++++.||.-+...|+..+|...+.
T Consensus       228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK  261 (297)
T COG4785         228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK  261 (297)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            32       4578889999999999888876553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.1e-08  Score=76.67  Aligned_cols=164  Identities=20%  Similarity=0.106  Sum_probs=118.2

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhcccccch-hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDA-KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .++...|+-+....-  .-.+..+.+.|++|+.....-.. .......+..+.|.++.+..++|+.+++   ..++.+..
T Consensus        37 Kil~~~pdd~~a~~c--KvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~  111 (652)
T KOG2376|consen   37 KILSIVPDDEDAIRC--KVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK  111 (652)
T ss_pred             HHHhcCCCcHhhHhh--hHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence            345555554432221  12456677788888855443311 1111222688999999999999999988   45667777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcc------------------------------c-ccHHHHHHHHHHHHhcCCh
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELE------------------------------Q-SWAEAWITLGRAQLNFGEP  141 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------p-~~~~~~~~lg~~~~~~~~~  141 (199)
                      +....|.+++++|+|++|+.+|+..++.+                              | +..+..|+.+.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            88899999999999999999998875442                              1 1455789999999999999


Q ss_pred             HHHHHHHHHHHhcC--------CCc-------HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          142 DKAIESFERALAIK--------PDS-------EEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       142 ~~A~~~~~~al~~~--------p~~-------~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      .+|++.++.++++.        .+.       ..+..+++.++..+|+.++|...+
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            99999999995441        111       236788999999999999987744

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.96  E-value=6.7e-09  Score=72.72  Aligned_cols=105  Identities=11%  Similarity=0.075  Sum_probs=94.1

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l   97 (199)
                      ...|+.+..++..|+|.+|...|...     ..+..+.+++.+|.+++.+|++++|...|..+++-.|++   ++.++-+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            34688899999999999999998877     445568899999999999999999999999999988776   5899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           98 AQVLLELGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      |.|...+|+.++|-..|++++...|+...+...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999998776543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.94  E-value=1.7e-09  Score=79.61  Aligned_cols=141  Identities=19%  Similarity=0.142  Sum_probs=107.9

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc------c
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQ------S  123 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~  123 (199)
                      ...++-++|+.|+..|+|++|+..-+.-+.+....      -.++.++|.|+.-.|+++.|+++|.+.+.+.-      -
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            34566778888899999999998877766654322      36788999999999999999999988775522      2


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105          124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKP------DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT  196 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  196 (199)
                      .++.-|.+|..|.-..++++||.++.+-+.+..      ....+.+.||.++..+|..++|....-...+.....+|.+
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s  352 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS  352 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence            455678899999999999999999988877643      2356788899999999999888776665666666666655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.94  E-value=2.4e-08  Score=66.11  Aligned_cols=130  Identities=17%  Similarity=0.041  Sum_probs=112.4

Q ss_pred             CCCchHhhhcchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHH
Q 029105           22 LPFDQQDQEHGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQ   96 (199)
Q Consensus        22 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~   96 (199)
                      -|..++.+.+|+.....|++.+|...|.++   ....++..+..+++..+..+++..|...++...+.+|..  ++....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            344566678899999999999999999988   455678899999999999999999999999999998854  677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      +|.++...|++..|...|+.++...|+ +.+....+..+..+|+..+|..-+..+.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            999999999999999999999999887 6778889999999998887766555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.4e-08  Score=67.09  Aligned_cols=106  Identities=18%  Similarity=0.289  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN----------AVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ...++...|+-++..|+|.+|...|..++..        .|..          ..++.+++.|+...|+|-++++.+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567888999999999999999999988643        3444          367889999999999999999999999


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      +..+|++..+++..|.++...=+..+|...|.++++++|.-..+
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999999999999999999999999999986543

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.93  E-value=7.7e-08  Score=80.74  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=84.3

Q ss_pred             hhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCH
Q 029105           33 LSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~  107 (199)
                      ..+.+.|++++|.+.|...   ..+.+...+..+...|.+.|++++|...|.+....  .|+ ...+..+...+.+.|++
T Consensus       587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~  665 (1060)
T PLN03218        587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL  665 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence            3455666666666666555   11223455566666666666666666666665543  232 44555566666666666


Q ss_pred             HHHHHHHHHHhhcc-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          108 WNALKAATRATELE-QSWAEAWITLGRAQLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       108 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ++|.+.+..+.+.. +-+...+..+..+|.+.|++++|+..|+++...  .| +...|..+...|.+.|+.++|...+
T Consensus       666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66666666665542 223445666666666666666666666665442  23 3455666666666666666655433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.93  E-value=1.7e-08  Score=82.16  Aligned_cols=149  Identities=13%  Similarity=0.042  Sum_probs=99.3

Q ss_pred             cchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCC-------------------
Q 029105           31 HGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPE-------------------   89 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~-------------------   89 (199)
                      +...|.+.|++++|...|.....| +...|..+...|.+.|+.++|++.|++....  .|+                   
T Consensus       366 Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~  444 (697)
T PLN03081        366 LVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ  444 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence            345566666666666666655333 2345555666666666666666666554432  222                   


Q ss_pred             ----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105           90 ----------------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus        90 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                                      +...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++.
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence                            1233445555666666666666666543 1233 345678888888888999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          154 IKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       154 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +.|++...+..++.+|...|++++|.+..
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~  551 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVV  551 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence            99998888999999999999999988754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.92  E-value=9.8e-08  Score=69.87  Aligned_cols=154  Identities=16%  Similarity=0.070  Sum_probs=99.4

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC----------------------
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR----------------------   87 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----------------------   87 (199)
                      .......|++..|......+  ..|.++.++.....+|...|+|........+.-+..                      
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~  239 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA  239 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555544  555566666666666666666665555444432210                      


Q ss_pred             --------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----------------------------
Q 029105           88 --------------------PENAVLHEQKAQVLLELGDAWNALKAATRATE----------------------------  119 (199)
Q Consensus        88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------------------  119 (199)
                                          .+++.+...++.-+..+|++++|.+....+++                            
T Consensus       240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~  319 (400)
T COG3071         240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK  319 (400)
T ss_pred             hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence                                01123334445555566667777666555443                            


Q ss_pred             ---cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          120 ---LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       120 ---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                         .+|++|..+..+|..+...+.+.+|..+|+.++...|. ...+..+|.++.++|+..+|......+.
T Consensus       320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence               35667788888999999999999999999988888776 5567888888888888888877555444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.3e-07  Score=65.93  Aligned_cols=148  Identities=12%  Similarity=-0.010  Sum_probs=120.6

Q ss_pred             chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCH
Q 029105           32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDA  107 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~  107 (199)
                      |.++...|++++|+......   ...++...-..++.+..+++-|...+++..+++.+.  .+..||..+..    -+++
T Consensus       115 a~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhh
Confidence            66778888899988887663   345566666788888999999999999998887553  33445544443    4568


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ..|.-+|+..-...|..+......+.|++.+|++++|...++.++..++++++++.++..+-...|+..++....+.
T Consensus       190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            99999999999977878999999999999999999999999999999999999999999999999988776554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.91  E-value=3.9e-09  Score=76.04  Aligned_cols=104  Identities=17%  Similarity=0.088  Sum_probs=95.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      -+.|+.|+..|.|++|+.+|.+.  ..|.++-.+.+.+.+|++...|..|...+..++.++.....+|...|..-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999999988  7888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      ..+|.+.++.++++.|++.+..-.++
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            99999999999999998766544333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.90  E-value=2.3e-08  Score=81.37  Aligned_cols=144  Identities=12%  Similarity=-0.035  Sum_probs=81.5

Q ss_pred             chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDAWN  109 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~  109 (199)
                      -..|.+.|++++|...|.....+ +...|..+...|.+.|++++|+..|++....  .| +...+..+...+.+.|++++
T Consensus       266 i~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~  343 (697)
T PLN03081        266 IDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEH  343 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHH
Confidence            45677788888888888776433 4567778888888888888888888777543  23 23445555555555555555


Q ss_pred             HHHHHHHHhhcc-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          110 ALKAATRATELE-QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       110 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      |.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+  | +...|..+...|...|+.++|..
T Consensus       344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~  412 (697)
T PLN03081        344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE  412 (697)
T ss_pred             HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence            555555555442 22333444444444444444444444444322  1 23344444444444444444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2.4e-08  Score=71.56  Aligned_cols=104  Identities=22%  Similarity=0.370  Sum_probs=94.4

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      ..+.-+..-|+-|+...+|..|+.+|.++|...-.+    ..+|.+.+.|.+..|+|..|+..+.+++.++|.+..+++.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            356777889999999999999999999999875544    4789999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      -+.|+..+.++.+|..+++..+.++...
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999999999988876554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=4.4e-08  Score=74.95  Aligned_cols=149  Identities=13%  Similarity=-0.004  Sum_probs=119.5

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      +.+...|+|++|.....+.  ..|++..++.....++.+.++|++|+...+.-....-.+ ...+..+.|.+++++.++|
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence            4566788999999988888  668999999999999999999999996555433222222 2237899999999999999


Q ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------------------------cH
Q 029105          111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-------------------------------SE  159 (199)
Q Consensus       111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~  159 (199)
                      +..++   ..++.+.......|.+++++|+|++|++.|+..++.+.+                               .-
T Consensus        99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy  175 (652)
T KOG2376|consen   99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY  175 (652)
T ss_pred             HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence            99998   456666778899999999999999999999988654321                               23


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          160 EARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      +..++.+.++...|+|.+|.+....+
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA  201 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKA  201 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            46788999999999999998866655

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.87  E-value=1.6e-07  Score=78.86  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=36.0

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-cccHHHHHHHHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALN----LRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QSWAEAWITLGR  133 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~  133 (199)
                      .+..+...+.+.|++++|.+.|.+...    +.|+ ...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+..
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            334444444444444444444444332    1222 2333333334444444444444444443332 122333333333


Q ss_pred             HHHhcCChHHHHHHHHHHH
Q 029105          134 AQLNFGEPDKAIESFERAL  152 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al  152 (199)
                      .|.+.|++++|+..|.++.
T Consensus       623 ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHH
Confidence            3444444444444443333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.87  E-value=3.8e-08  Score=71.46  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             hccchhhhhhccccc--------chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCc------HHHHHHHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPEN------AVLHEQKAQVL  101 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~  101 (199)
                      ...++++|+..+.++        ....-+..+..+|.+|... |++++|++.|++++.+....      ..++..+|.++
T Consensus        86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            344777777777666        2334577888999999999 99999999999999873322      36788999999


Q ss_pred             HHcCCHHHHHHHHHHHhhccc-------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          102 LELGDAWNALKAATRATELEQ-------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      ...|+|++|++.|+++....-       .....++..+.|++..|++..|...+++....+|..
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999999987531       122356678889999999999999999999999865

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.85  E-value=8.7e-09  Score=52.78  Aligned_cols=42  Identities=40%  Similarity=0.657  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT  167 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  167 (199)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345556666666666666666666666666666665555543

>PLN03077 Protein ECB2; Provisional

Probab=98.84  E-value=6.6e-08  Score=80.51  Aligned_cols=145  Identities=10%  Similarity=-0.027  Sum_probs=88.3

Q ss_pred             hhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHcCCHH
Q 029105           35 GAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--ENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~  108 (199)
                      +...|+.++|+..|.+.    ..|+. ..+..+-..+.+.|.+++|..+|+...+..+  .+...+..+..++.+.|+++
T Consensus       564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~  642 (857)
T PLN03077        564 YVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT  642 (857)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence            33444555555554433    22222 2233333445555555555555555542211  12345566666666667777


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +|.+.+++. ...|+ +..|..+-..+...|+.+.+....+++++++|++...+..++.+|...|+++++.+..
T Consensus       643 eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr  714 (857)
T PLN03077        643 EAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR  714 (857)
T ss_pred             HHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence            776666654 23444 4456555556666777777777777888889999999999999999999999887644

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.80  E-value=6.5e-08  Score=60.29  Aligned_cols=93  Identities=24%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE----EARDDRQTAL  169 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~  169 (199)
                      +-..|..+.+.|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|++.+.+++++..+..    .++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            445678888999999999999999999999999999999999999999999999999999976543    4688899999


Q ss_pred             HHHhhhhhhhhhccccc
Q 029105          170 HLVKRRKHLHLSGLSND  186 (199)
Q Consensus       170 ~~~~~~~~a~~~~~~~~  186 (199)
                      ...|+-+.|...+-++.
T Consensus       126 Rl~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAA  142 (175)
T ss_pred             HHhCchHHHHHhHHHHH
Confidence            99999998877665544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=7.5e-08  Score=68.40  Aligned_cols=155  Identities=14%  Similarity=0.011  Sum_probs=123.8

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc---------------------
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN---------------------   85 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---------------------   85 (199)
                      .-+|.+|+...+|..|.+.|.+.  ..|......+..+..+++.+.+.+|+........                     
T Consensus        48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~D  127 (459)
T KOG4340|consen   48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGD  127 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccccc
Confidence            45789999999999999999988  7888888888888888888888888776554322                     


Q ss_pred             ---------cCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           86 ---------LRP--ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        86 ---------~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                               .-|  +++....+.|.+.++.|+|++|++-|+.+++...-.+..-++++.++++.+++..|++...+.+..
T Consensus       128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                     123  445677889999999999999999999999999989999999999999999999999988877754


Q ss_pred             ----CCCc-------------------------HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          155 ----KPDS-------------------------EEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       155 ----~p~~-------------------------~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                          .|..                         .++....+.++.+.++++.|..+..
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                3431                         1345556667788888877766554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1e-07  Score=66.45  Aligned_cols=138  Identities=12%  Similarity=0.019  Sum_probs=105.2

Q ss_pred             chhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------CCCcHHHHHHHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL------RPENAVLHEQKAQVLL  102 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~  102 (199)
                      ...+...|+|.-.+..+.+.   ..|..+.....+|.+.++.|+.+.|..+|+.+-+.      -........+.+.++.
T Consensus       184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l  263 (366)
T KOG2796|consen  184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL  263 (366)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence            34455566666666666555   45677888888999999999999988888844322      2234566778888888


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE---EARDDRQTAL  169 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~  169 (199)
                      -.+++..|...+.+++..||.++.+..+.|.|.+.+|+..+|++.++.++.+.|...   ....+|..+|
T Consensus       264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999998742   3344454443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.79  E-value=2e-08  Score=51.42  Aligned_cols=42  Identities=26%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      .++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345666666666666666666666666666666666666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.68  E-value=1.8e-08  Score=48.34  Aligned_cols=31  Identities=35%  Similarity=0.408  Sum_probs=15.6

Q ss_pred             HHHHhhcccccHHHHHHHHHHHHhcCChHHH
Q 029105          114 ATRATELEQSWAEAWITLGRAQLNFGEPDKA  144 (199)
Q Consensus       114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  144 (199)
                      |+++|+++|+++.+|+++|.+|...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444555555555555555555555555444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.67  E-value=8.9e-08  Score=69.64  Aligned_cols=137  Identities=19%  Similarity=0.090  Sum_probs=108.4

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--------
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS--------  123 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------  123 (199)
                      .+...+|..+...+.|+++++.|+.++.+..++      ..++..+|..+....++++|+-+..++..+...        
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            566778999999999999999999998874333      267889999999999999999999999887432        


Q ss_pred             --cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105          124 --WAEAWITLGRAQLNFGEPDKAIESFERALAIK------PDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       124 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  194 (199)
                        ..-+++.++..+..+|..-.|.++.+++.++.      +........++++|...|+.+.|..-+-+++.-.-..||
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd  281 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD  281 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence              23467889999999999999999999998774      334567788999999999998877666555543333344

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.66  E-value=1.6e-07  Score=61.93  Aligned_cols=93  Identities=16%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             hhhhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC--
Q 029105           41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVLLELGD--  106 (199)
Q Consensus        41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--  106 (199)
                      ++.|.+.+...  .+|.+++.++.=|.++..+.+          +++|+.-|++++.++|+...++.++|.++...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            34444444443  688888888888877766543          4678889999999999999999999999987655  


Q ss_pred             ---------HHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105          107 ---------AWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus       107 ---------~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                               |++|..+|+++...+|++...+..|..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                     888999999999999998765554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.64  E-value=2.4e-06  Score=59.63  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI  129 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  129 (199)
                      .+..++..|...++.|++++|+..|+.+...+|..+   .+...++..+++.++++.|+...++-+++.|+++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            467899999999999999999999999999988774   78899999999999999999999999999887654   677


Q ss_pred             HHHHHHHhc--------CChHHHHHHHHHHHhcCCCc
Q 029105          130 TLGRAQLNF--------GEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       130 ~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~  158 (199)
                      ..|.+++..        .-..+|+..|++.+...|+.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            888887643        22467899999999999986

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.63  E-value=2.6e-06  Score=59.06  Aligned_cols=105  Identities=35%  Similarity=0.418  Sum_probs=50.6

Q ss_pred             HHHhcccHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cHHHHHHHHHHHHhcCCh
Q 029105           66 NLAEDGKFREALGKWEAALNLRP---ENAVLHEQKAQVLLELGDAWNALKAATRATELEQS-WAEAWITLGRAQLNFGEP  141 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~  141 (199)
                      ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++...+. ....+..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            44555555555555555544443   22333334444444445555555555555555554 344555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          142 DKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      ..|+..+..++...|.....+..++..+.
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            55555555555555543334444444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.63  E-value=3.2e-06  Score=58.66  Aligned_cols=157  Identities=28%  Similarity=0.252  Sum_probs=128.6

Q ss_pred             hhcchhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH-HHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ-VLLE  103 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~  103 (199)
                      ...+..+...+.+..+...+...    ..+.....+...+......+++..++..+.+++...+.+.......+. ++..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (291)
T COG0457          63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE  142 (291)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence            44566667777777777776655    356677888899999999999999999999999988887666666666 8999


Q ss_pred             cCCHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhhhhhhh
Q 029105          104 LGDAWNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-SEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      .|+++.|...+.+++..+|   .........+..+...++++.|+..+.+++...+. ....+..++.++...+.+.++.
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  222 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL  222 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence            9999999999999988777   45666777777788999999999999999999999 6889999999999888777766


Q ss_pred             hhcccc
Q 029105          180 LSGLSN  185 (199)
Q Consensus       180 ~~~~~~  185 (199)
                      ......
T Consensus       223 ~~~~~~  228 (291)
T COG0457         223 EYYEKA  228 (291)
T ss_pred             HHHHHH
Confidence            654433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.62  E-value=4.1e-08  Score=47.08  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105           79 KWEAALNLRPENAVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      +|+++|+++|+++.+|+++|.++...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999863

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=7.9e-08  Score=65.95  Aligned_cols=92  Identities=14%  Similarity=0.027  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      +..-|..++...+|+.|+.+|.++|.++|..+..+.+.+.|++++.+++.+.....++++++|+....++.+|.+.....
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34457778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccc
Q 029105          174 RRKHLHLSGLSN  185 (199)
Q Consensus       174 ~~~~a~~~~~~~  185 (199)
                      .+.++.....++
T Consensus        93 ~~~eaI~~Lqra  104 (284)
T KOG4642|consen   93 GYDEAIKVLQRA  104 (284)
T ss_pred             cccHHHHHHHHH
Confidence            999988766555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.59  E-value=1.7e-06  Score=72.62  Aligned_cols=153  Identities=9%  Similarity=-0.012  Sum_probs=117.0

Q ss_pred             hcchhhhhccchhhhhhcccccc-------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPFD-------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQ   96 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~   96 (199)
                      ..|.++...|++++|...+..+.       ......+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            45677788999999988877651       11133466788999999999999999999998653321      246678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cHHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-----SEEARD  163 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~  163 (199)
                      +|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+++++.....     ...++.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            899999999999999999999876321        2234567889999999999999999999876321     245567


Q ss_pred             HHHHHHHHHhhhhhhhhhc
Q 029105          164 DRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~  182 (199)
                      .++.++...|++++|....
T Consensus       617 ~la~~~~~~G~~~~A~~~l  635 (903)
T PRK04841        617 MLAKISLARGDLDNARRYL  635 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            7888999999998886644

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.59  E-value=1.2e-07  Score=45.58  Aligned_cols=32  Identities=41%  Similarity=0.799  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      .+|+++|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.57  E-value=3.8e-06  Score=60.94  Aligned_cols=119  Identities=13%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-LGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      +|..+.....+.+..+.|...|.++....+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344455555566667777777777765555556666677766555 4455557777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhh
Q 029105          138 FGEPDKAIESFERALAIKPDSE---EARDDRQTALHLVKRRKH  177 (199)
Q Consensus       138 ~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~  177 (199)
                      .|+.+.|...|++++..-|...   .+|......-...|+.+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~  125 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES  125 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence            7777777777777776655544   345544444444454443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.57  E-value=2e-06  Score=69.08  Aligned_cols=109  Identities=26%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      .++|.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.||..+|++++|...|+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34444444444455555554444444444444555555555444444433444444444444444555555555555555


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          150 RALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      +++..+|. .+....+-.+|.+.+.|.+-.
T Consensus       102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen  102 RANQKYPS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            55555544 444444444444444444433

>PLN03077 Protein ECB2; Provisional

Probab=98.56  E-value=1.4e-06  Score=72.78  Aligned_cols=143  Identities=11%  Similarity=0.024  Sum_probs=112.4

Q ss_pred             hhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      ..|.+.|+.++|...|...  +.+...|..+...|...|+.++|+..|++..+.  .|+. ..+..+-..+.+.|.+++|
T Consensus       532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHH
Confidence            5677889999999988876  456778999999999999999999999988764  4554 4455555678889999999


Q ss_pred             HHHHHHHhhc---ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          111 LKAATRATEL---EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       111 ~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ..+|+.....   .| +...+..+..++.+.|++++|.+.+++. ...|+ ...|..|-.++...++.+.+...
T Consensus       609 ~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~  679 (857)
T PLN03077        609 LEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA  679 (857)
T ss_pred             HHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence            9999998844   34 3567888999999999999999999875 45565 66677777777766666655443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=2.6e-06  Score=59.72  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=111.7

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------cccHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELE------QSWAEAWI  129 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~  129 (199)
                      ..+.+.+..++.-.|.|.-.+..+.++++.+ |.++.....+|.+.++.|+.+.|..+++++-+..      .....+..
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            4466788899999999999999999999988 6778899999999999999999999998655432      23445677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          130 TLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +.+.+|.-.+++..|...|.+++..||.++.+..+.+.|..-+|+..+|.+..-+..
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~  313 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV  313 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999999999999999999999877554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.55  E-value=2.4e-07  Score=44.45  Aligned_cols=33  Identities=45%  Similarity=0.840  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      .+++.+|.++..+|++++|+.+|++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345556666666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.55  E-value=2.2e-07  Score=44.64  Aligned_cols=32  Identities=28%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.9e-06  Score=62.39  Aligned_cols=134  Identities=16%  Similarity=0.086  Sum_probs=111.0

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cccc---HHHHHHHHHHH
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSW---AEAWITLGRAQ  135 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~  135 (199)
                      ....+.+.+..|++.+|...+++.+.-.|.+..++..--..++.+|+...-...+++++.. +|+-   .-++-.++.++
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3345667788899999999999999999999988888888899999999999999999877 5543   45566778888


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  194 (199)
                      .+.|-|++|.+.-.++++++|.+.-+...++.++...++++++.+ ++...+..|..|.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ted~Wr~s~  243 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE-FMYKTEDDWRQSW  243 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH-HHHhcccchhhhh
Confidence            999999999999999999999999999999999999999998776 4445555555443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=3.4e-07  Score=69.08  Aligned_cols=137  Identities=10%  Similarity=0.055  Sum_probs=108.0

Q ss_pred             hhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHH-HHccCCC--------cHHHHHHHHHHHHHc
Q 029105           36 AELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEA-ALNLRPE--------NAVLHEQKAQVLLEL  104 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~--------~~~~~~~la~~~~~~  104 (199)
                      .++.+...+......+  ...+.+.++...+..++..|++.+|.+.+.. -+...|.        ...+|+++|.+++++
T Consensus       217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~  296 (696)
T KOG2471|consen  217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL  296 (696)
T ss_pred             HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence            4444444444444444  3335677888999999999999999988754 3343443        236689999999999


Q ss_pred             CCHHHHHHHHHHHhhc---------cc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105          105 GDAWNALKAATRATEL---------EQ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      |.|..+..+|.++++.         .|         ......|+.|..|...|+.-.|.++|.+++.....+|..|..++
T Consensus       297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA  376 (696)
T KOG2471|consen  297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA  376 (696)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            9999999999999961         11         24567899999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 029105          167 TALHLV  172 (199)
Q Consensus       167 ~~~~~~  172 (199)
                      .|+...
T Consensus       377 EcCima  382 (696)
T KOG2471|consen  377 ECCIMA  382 (696)
T ss_pred             HHHHHH
Confidence            988754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.49  E-value=2.6e-06  Score=71.62  Aligned_cols=160  Identities=17%  Similarity=0.015  Sum_probs=114.5

Q ss_pred             hhcchhhhhccchhhhhhcccccc----------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC-----CcHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFD----------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP-----ENAVL   93 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~   93 (199)
                      ..+|.++...|++++|...+.++.          .+.....+..+|.+++..|++++|...+.+++....     ....+
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  614 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC  614 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence            355777788888888888776650          012233455778888999999999999998876532     12456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------------------------------------H----HHH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSW-----------------------------------------A----EAW  128 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------------------------------------~----~~~  128 (199)
                      +..+|.++...|++++|...+.++..+.+..                                         .    ..+
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  694 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW  694 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence            6678889999999999988888875542110                                         0    013


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKP------DSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ..+|.++...|++++|+..+++++....      ....++..++.++...|+.++|.....++.+.
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677788889999999999999887632      22456788899999999998887766555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.49  E-value=1.3e-05  Score=52.35  Aligned_cols=95  Identities=31%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----------------------AVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      +...|......++...++..+.+++.+...+                      ..+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3344555667778888888888888774322                      145566777788899999999999999


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      +..+|.+-.++..+-.++...|+..+|+..|+++...
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=5.8e-06  Score=57.94  Aligned_cols=129  Identities=13%  Similarity=0.116  Sum_probs=103.6

Q ss_pred             hhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           33 LSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      .++.++.+.+-|.....+...-++-..+.++|..+..    .++..+|.-+|+..-+..|..+......+.|+..+|+|+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            4556666677777666666444445566666666644    357889999999999978888999999999999999999


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCcHHH
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI-ESFERALAIKPDSEEA  161 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~  161 (199)
                      +|...++.++..++++++.+.++-.+-..+|...++. +...+....+|.++-.
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            9999999999999999999999999999999886655 5557777788887754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.1e-06  Score=60.75  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             hhcchhhhhccchhhhhhccccc----------chh----------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF----------DAK----------QLALSFEAQGNNLAEDGKFREALGKWEAALNLRP   88 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~   88 (199)
                      .+.|+-++..|+|.+|...|..+          ..|          .....+.+++.|+...|+|-++++.....+..+|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            45699999999999999988776          222          2334678899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105           89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE  126 (199)
Q Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  126 (199)
                      .+..+++..|......=+..+|...+.++++++|.-..
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            99999999999999999999999999999999997544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.47  E-value=5.2e-07  Score=43.24  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      .+++.+|.+++.+|++++|+.++++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555666666666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.46  E-value=2e-07  Score=67.15  Aligned_cols=99  Identities=24%  Similarity=0.336  Sum_probs=91.5

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      -....+.-.+..|.++.|++.|..++.++|....++...+.++.++++...|+..|..++.++|+...-+-..|.+...+
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            34445666678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCC
Q 029105          139 GEPDKAIESFERALAIKPD  157 (199)
Q Consensus       139 ~~~~~A~~~~~~al~~~p~  157 (199)
                      |++++|...+..+.+++-+
T Consensus       196 g~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hchHHHHHHHHHHHhcccc
Confidence            9999999999999998754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=2.8e-05  Score=58.98  Aligned_cols=126  Identities=17%  Similarity=0.088  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      .-+...|...|.--..++++..|...|++++..+..+..+|...+.+-++.+....|...+.+|+.+-|.--..|+....
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            34566788888888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      +-..+|+...|.+.|++-+...|+ ..+|......-.+.+..+.|..
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~  195 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS  195 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH
Confidence            888999999999999999999997 5667766666666666666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=7.1e-06  Score=66.05  Aligned_cols=135  Identities=16%  Similarity=-0.004  Sum_probs=114.2

Q ss_pred             hhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105           36 AELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  113 (199)
                      ...+++.+|+....+.  ..|+..-+....|..+++.|+.++|..+++..-...+++...+-.+-.||..++++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            4556788888888877  78888888889999999999999999999888888888888899999999999999999999


Q ss_pred             HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      |++++..+|+ .+..+.+=.+|.+.+.|.+-.+.--+..+.-|.++-.......+...
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ  156 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence            9999999999 88888888999999998776666666666778887765555555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=5.1e-06  Score=60.70  Aligned_cols=85  Identities=25%  Similarity=0.229  Sum_probs=72.3

Q ss_pred             HHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           67 LAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        67 ~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      +....+|..|+..++-....+.... .....+|.|+++.|+|++|+..|.-+...+.-+.+.+.+++.|++.+|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            3456789999999888776655443 677889999999999999999999999877778899999999999999999998


Q ss_pred             HHHHHH
Q 029105          146 ESFERA  151 (199)
Q Consensus       146 ~~~~~a  151 (199)
                      ....++
T Consensus       112 ~~~~ka  117 (557)
T KOG3785|consen  112 SIAEKA  117 (557)
T ss_pred             HHHhhC
Confidence            876655

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.38  E-value=6.5e-06  Score=69.18  Aligned_cols=135  Identities=13%  Similarity=-0.023  Sum_probs=114.6

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRA  134 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~  134 (199)
                      ..++..+..+|...+++++|.+.++..++........|..+|..++.+++-++|...+.+|+..-|.  +.+.....|..
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            3456677888888899999999999999888888899999999999999999999999999999887  77788888999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV  191 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  191 (199)
                      .++.|+.+.+...|+..+.-+|...+.|..+.+.-...|+.+.+...+.+..+..|.
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999998888888877777766655555544443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.4e-06  Score=62.66  Aligned_cols=96  Identities=21%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             hhcchhhhhccchhhhhhccccc-----chhh-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-----DAKQ-LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      -..|+-+++..+|..|+..|...     .+|+ ++..+.+.+.+.+..|+|..|+..+.+++.++|.+..+++.-+.|++
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~  164 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL  164 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence            35699999999999999999877     3443 56677899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhhccccc
Q 029105          103 ELGDAWNALKAATRATELEQSW  124 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~  124 (199)
                      .+.++..|..+++..+.++...
T Consensus       165 eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  165 ELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999998876543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=1.2e-05  Score=58.45  Aligned_cols=150  Identities=13%  Similarity=-0.098  Sum_probs=106.0

Q ss_pred             hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CCCc---HHHHHHHHHHHHHcCCHHHH
Q 029105           37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RPEN---AVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~~la~~~~~~~~~~~A  110 (199)
                      ..|++.+|.....+.  ..|.+.-++..--.+++..|+...-...+++.+-. +|+-   ..+.-.++-++.+.|-|++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            344555544444444  66777777777778888888888888888888766 5555   34555667778888888888


Q ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS----EEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      .+..+++++++|.+.-+...++.++...|++.++.+...+.-..-...    ..-|...+.++.+-+.++.|...+-..+
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            888888888888888888888888888888888888776653332211    1125566777777777877776554333

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.7e-05  Score=54.35  Aligned_cols=125  Identities=26%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-HHHHHHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-AEAWITLGRAQL  136 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~  136 (199)
                      ..-+..+......|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....+. .......-..+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3445556677888999999999999999999999999999999999999888877665432211111 000000111222


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      +.....+. ..+++.+..+|++.++...++..+...|+.++|....+
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll  260 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL  260 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            22222211 22334444555555555555555555555555554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.32  E-value=0.0001  Score=54.49  Aligned_cols=114  Identities=18%  Similarity=0.084  Sum_probs=58.2

Q ss_pred             hhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cHHHHHHHHHHHHhcCChH
Q 029105           64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS-WAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~  142 (199)
                      |..-+..|+|.+|.....+.-+-.+....++..-+....++|+++.|-.++.++-+.-++ ........+.+....|+++
T Consensus        91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence            333444455555555555544444444444444445555555555555555555555221 2233444455555555555


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      .|..-..+++...|.++++..-...+|...|.+.+
T Consensus       171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            55555555555555555555555555555555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.26  E-value=6.2e-06  Score=60.35  Aligned_cols=164  Identities=14%  Similarity=0.087  Sum_probs=125.4

Q ss_pred             hhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQ   99 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~   99 (199)
                      .+...+|.|++++..-...        +....-.++.+++..+....+|.+++.+.+..+.+-...+     .....+|.
T Consensus        51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~  130 (518)
T KOG1941|consen   51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGN  130 (518)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHH
Confidence            4556677777766542221        2223456788899999999999999988888776643332     56777899


Q ss_pred             HHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------cHHHHH
Q 029105          100 VLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPD----------SEEARD  163 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~  163 (199)
                      .+.-++.++++++.|+++++...++      ..+...+|..+..+.++++|+-+..++.++...          ...+.+
T Consensus       131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            9999999999999999999874432      346788999999999999999998888877432          134678


Q ss_pred             HHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105          164 DRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT  196 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  196 (199)
                      .++.++..+|+..+|.+..-.++......||..
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            899999999999999988888887777777753

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=8e-05  Score=51.83  Aligned_cols=128  Identities=22%  Similarity=0.157  Sum_probs=90.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----cccH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELE-----QSWA  125 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~  125 (199)
                      +..+..-+.++....+|++|..++.++++-..++      +..+-..+....++..+.++...++++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4455566777788888999888888888554443      2445566777778888899999998888763     4444


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ..-...+--..+.-++++|++.|++++.+-..+      .+.+...+.++.+..++.+|..+.+.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            444455555667778889999998888764332      23466677888888888888776654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.24  E-value=3.6e-05  Score=55.89  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             hccchhhhhhccccc--chhhHHHHHHHHhhHHHh-cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAE-DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~  113 (199)
                      +.+..+.|...|.++  ..+....++...|.+-+. .++.+.|...|+.+++..|.+..+|......+...++.+.|...
T Consensus        13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l   92 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL   92 (280)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence            344466777777777  334467788888988666 57777799999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          114 ATRATELEQSWA---EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       114 ~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      |++++..-|...   ..|......-...|+.+......+++.+..|.....
T Consensus        93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen   93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence            999998876544   578888888889999999999999999998885543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.17  E-value=3.9e-05  Score=58.49  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=83.9

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------------------
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS------------------  123 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------  123 (199)
                      .+-.-..+..+...-++.-.+|++++|+.+.++..|+.-  ......+|...++++++....                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            334444567788888888889999999888888888752  233456666666666543110                  


Q ss_pred             -------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhhhhhhh
Q 029105          124 -------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       124 -------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                             ...+...+|.|..++|+.++|++.++..++..|.  +..++.+|..++..++.+.++..
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence                   0224567888888999999999999999887775  45678888888888888887654

The molecular function of this protein is uncertain.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.16  E-value=4.1e-06  Score=40.06  Aligned_cols=30  Identities=37%  Similarity=0.721  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKP  156 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  156 (199)
                      +|+.+|.+|..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=6.7e-05  Score=51.85  Aligned_cols=128  Identities=14%  Similarity=0.061  Sum_probs=83.3

Q ss_pred             chhhhhccchhhhhhccccc-------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF-------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKA   98 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la   98 (199)
                      |+.+--..+++.|-..|.++       ....+....+.-+.-.++.++.++|+.++++++++..+-.      ..+..+|
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia  120 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA  120 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence            34444444555555444443       2222333333333334455689999999999988866543      3344778


Q ss_pred             HHHHHc-CCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105           99 QVLLEL-GDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus        99 ~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      .+|-.. .++++|+.+|+++-+-...      .-..+...+..-..+++|.+|+..|+++....-++.
T Consensus       121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            887654 8899999999998865432      223556667777788999999999999887765554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=7.7e-05  Score=56.68  Aligned_cols=139  Identities=14%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             ccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029105           38 LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT  115 (199)
Q Consensus        38 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  115 (199)
                      .+++..|...|..+  .+..+...|...+.+-++..+...|...+.+++.+-|.-..+|+-.-.+--..|+...|.++|+
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34445555555555  3344566777788888888888888888888888888777777777777777777777777777


Q ss_pred             HHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105          116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       116 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      +-+...|+ ..+|...-..-...+..+.|...|++-+-.+|+ ...|...+..-...|...-+
T Consensus       166 rW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  166 RWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHH
Confidence            77777765 345555544445555555566666655555554 33344444444444443333

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.13  E-value=1.3e-06  Score=65.76  Aligned_cols=107  Identities=14%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      +.+...+..+.++.|+..|.++  .+|+.+..+...+..+...++|..|+..+.++++.+|....+|+..|......+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            4467778888999999999999  88889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      .+|+..|++...+.|+.+.+...+-.|-.
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            99999999999999999998877766644

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=0.00014  Score=48.82  Aligned_cols=100  Identities=21%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      +...++..+...+++++|+..++.++....+.   +.+-.++|.+...+|++++|+..+...-... -.+..-...|.++
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil  169 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence            45567888899999999999999998764443   3567889999999999999999886654321 1233456789999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcH
Q 029105          136 LNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      ...|+-++|...|++++...++.+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         170 LAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHcCchHHHHHHHHHHHHccCChH
Confidence            999999999999999999985543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.11  E-value=7.8e-05  Score=58.06  Aligned_cols=106  Identities=21%  Similarity=0.166  Sum_probs=89.8

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----HHHHHHHHHHHHhcCChHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW----AEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      ....+.|.+.+.......|+.....+..|.++...|+.++|++.+++++......    .-.++.+|.++..++++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4567889999999999999999999999999999999999999999998654433    235788999999999999999


Q ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHHHHHhhh
Q 029105          146 ESFERALAIKPDS-EEARDDRQTALHLVKRR  175 (199)
Q Consensus       146 ~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~  175 (199)
                      .+|.+.++.+.-. .-..+..|.|+...++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999876543 34456677888888888

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.09  E-value=4.6e-05  Score=59.28  Aligned_cols=115  Identities=19%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             hhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 029105           41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLELGDAWNALKAA  114 (199)
Q Consensus        41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~  114 (199)
                      .+.|.+.....  ..|+.+-.++..|+++...|+.++|++.|++++.....-    ..+++.+|.++..+.+|++|..++
T Consensus       249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            34444444444  568888899999999999999999999999988543332    367788999999999999999999


Q ss_pred             HHHhhccccc-HHHHHHHHHHHHhcCCh-------HHHHHHHHHHHhcC
Q 029105          115 TRATELEQSW-AEAWITLGRAQLNFGEP-------DKAIESFERALAIK  155 (199)
Q Consensus       115 ~~al~~~p~~-~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~  155 (199)
                      .+..+.+.-. .-..|..|.|+...|+.       ++|...|.++-..-
T Consensus       329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999876543 33456788899999999       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.09  E-value=9.3e-06  Score=38.77  Aligned_cols=32  Identities=25%  Similarity=0.209  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666666677777777777777776666663

...

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.09  E-value=2.2e-05  Score=60.91  Aligned_cols=105  Identities=24%  Similarity=0.262  Sum_probs=94.0

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHH
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA  144 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  144 (199)
                      .....|+...|+.++..++...|... ....++|.++.+-|-...|-..+.+++.+....|-.++.+|.++..+.+.+.|
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            33557999999999999999988654 44789999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          145 IESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       145 ~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      ++.|+++++.+|+++.+...|-.+.+
T Consensus       696 ~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  696 LEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999998877776665

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=98.02  E-value=0.00014  Score=44.34  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHhhcccccHHHH
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGD-----------AWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      ++..++..|++-+|++..+..+..++++.   ..+..-|.++..+..           .-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            35667888888888888888888877765   445556666654432           3456777777777777777777


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      +.+|.-+-....|+++..-.++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77777666666677777777776655

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=98.00  E-value=8.4e-05  Score=44.16  Aligned_cols=69  Identities=19%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhh
Q 029105          111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+..+++.++++  ..+...+-.++..+|.-+...
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv   78 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV   78 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence            455666667777777777777777777777777777777777776654  556666666666666654433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.00  E-value=8.2e-05  Score=56.79  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWITLGR  133 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~  133 (199)
                      ..+...+|.|..+.|+.++|++.++..++..|.  +..++.++..++...+.|.++...+.+--.+ -|+.....+..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            334566788888888888888888888876664  3467788888888888888887777775433 2444544444444


Q ss_pred             HHHh-cCC---------------hHHHHHHHHHHHhcCCCcHHH
Q 029105          134 AQLN-FGE---------------PDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       134 ~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~  161 (199)
                      .-.+ .++               -..|.+.+.+|++.+|..+..
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            3322 111               123567788888888776654

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=97.97  E-value=0.00023  Score=51.13  Aligned_cols=75  Identities=13%  Similarity=0.039  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      ....++=.++...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-..
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            455677778889999999999999999999999999999999999999999999999999999999887654433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.97  E-value=9.7e-05  Score=39.01  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      .++.+|..+.++|+|++|..+.+.+++++|++.++......+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            4556666666666666666666666666666666554444433

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.00025  Score=54.21  Aligned_cols=92  Identities=14%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 029105           75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIESFERALA  153 (199)
Q Consensus        75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~  153 (199)
                      .-...|+.+....+.++.+|........+.+.+.+--.+|.+++..+|+++..|..-|...+..+. .+.|...|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345678899999999999999998888888889999999999999999999999999998888776 8999999999999


Q ss_pred             cCCCcHHHHHHHH
Q 029105          154 IKPDSEEARDDRQ  166 (199)
Q Consensus       154 ~~p~~~~~~~~l~  166 (199)
                      .+|+++..|...-
T Consensus       169 ~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  169 FNPDSPKLWKEYF  181 (568)
T ss_pred             cCCCChHHHHHHH
Confidence            9999998776543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.93  E-value=0.00015  Score=61.45  Aligned_cols=123  Identities=18%  Similarity=0.155  Sum_probs=108.8

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~  108 (199)
                      .+|...+.+++|.+.++..  ...+...+|..+|..++++.+-+.|...+.+|+..-|.  +..+..-.|++-++.|+.+
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            4555666677777776655  33356788999999999999999999999999999998  7788889999999999999


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .+...|+-.+..+|.-.+.|.-+...-...|+.+.....|++++.+.
T Consensus      1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999875

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=1.8e-05  Score=60.10  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=87.3

Q ss_pred             chhhhhccchhhhhhccccc---------chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHHHcc---------CC---
Q 029105           32 GLSGAELEKNDDNNEHQEPF---------DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAALNL---------RP---   88 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~~---   88 (199)
                      ...++..|++.+|.+.+...         ..|.-  -..+.++|.++++.|.|.-+..+|.++++.         .|   
T Consensus       247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            56677889999999877655         23332  235678999999999999999999999851         11   


Q ss_pred             ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           89 ------ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        89 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                            ....+.++.|..+...|+.-.|.++|.+++.....+|..|..++.|++.
T Consensus       327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                  1247889999999999999999999999999999999999999998863

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.92  E-value=7e-05  Score=53.90  Aligned_cols=78  Identities=22%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      +..-...+.-....|+.++|...|+-++.+.|++++++..+|......++.-+|-++|-+++.++|.+.+++.+.+..
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            334455666678889999999999999999999999999999999999999999999999999999999988877653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.92  E-value=0.00017  Score=47.02  Aligned_cols=65  Identities=25%  Similarity=0.244  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      ...++..++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            45567778888999999999999999999999999999999999999999999999999887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10941 hypothetical protein; Provisional

Probab=97.91  E-value=0.00026  Score=50.89  Aligned_cols=78  Identities=17%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      ...+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|...++.-++..|+++.+-.....+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            345667788899999999999999999999999999999999999999999999999999999999998876655443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.87  E-value=3.1e-05  Score=36.57  Aligned_cols=31  Identities=39%  Similarity=0.583  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      +++.+|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555555554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.86  E-value=0.00011  Score=52.95  Aligned_cols=74  Identities=22%  Similarity=0.189  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      ...+.-..+.|+.++|...|+.++.+.|++++++...|......++.-+|-++|-+++.++|.+.+++.+.++.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            44455567899999999999999999999999999999999999999999999999999999999988776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.86  E-value=0.00012  Score=38.61  Aligned_cols=42  Identities=17%  Similarity=-0.087  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      ++++.+|..+++.|+|++|..+++.++++.|++.++......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356677777778888888888888888888877776554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.00023  Score=54.87  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=94.5

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcccccHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE---LGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      .-|...+....-|+--+..+.+..|+..|.+++...|....++.+.+.++++   .|+.-.|+..+..+++++|....+|
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            4466777778888888888899999999999999999999999999988886   3567788999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      +.++.++..++++.+|+++-..+....|.+.
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            9999999999999999998887777777543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.83  E-value=3.4e-05  Score=37.38  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=9.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATR  116 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~  116 (199)
                      .++|.++...|+|++|+.+|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444444444444444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.0024  Score=44.47  Aligned_cols=124  Identities=14%  Similarity=0.047  Sum_probs=86.0

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccC----C-Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-----
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLR----P-EN-AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE-----  126 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~-~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----  126 (199)
                      +.+..-|+.|....+|+.|-..|.++....    . ++ ...+...+.||. ..+.++|+.++++++++..+-..     
T Consensus        35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aA  113 (288)
T KOG1586|consen   35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAA  113 (288)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334445666666777777777777765432    2 22 355666666664 56999999999999999765433     


Q ss_pred             -HHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          127 -AWITLGRAQLNF-GEPDKAIESFERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       127 -~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                       .+..+|.+|..- .++++|+.+|+++-+.....      ..++.-.+.....+++|.+|...+
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy  177 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY  177 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             355889888765 89999999999998775443      234555666667788888876643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.80  E-value=5.6e-05  Score=35.64  Aligned_cols=30  Identities=20%  Similarity=0.114  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      ++.+|.++...|++++|+..+++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            344444444444555555555444444443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.79  E-value=4.1e-05  Score=55.65  Aligned_cols=91  Identities=15%  Similarity=0.070  Sum_probs=83.4

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      .-.+..|.+++|++.|..+  .+|..+..+...+.++...+++..|+..+..++.++|+...-+...|.....+|+|.+|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            3455678899999999988  88899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccc
Q 029105          111 LKAATRATELEQS  123 (199)
Q Consensus       111 ~~~~~~al~~~p~  123 (199)
                      ...+..+.+++-+
T Consensus       202 a~dl~~a~kld~d  214 (377)
T KOG1308|consen  202 AHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999998654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.78  E-value=5.1e-05  Score=36.76  Aligned_cols=28  Identities=46%  Similarity=0.597  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ++.++|.+|..+|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999996644

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.76  E-value=0.0041  Score=40.83  Aligned_cols=108  Identities=19%  Similarity=0.083  Sum_probs=88.3

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      ....+..+..+-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            34566677777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      ..+|+..-=. +-.+++...+ ++.+...+
T Consensus        89 ~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv  116 (160)
T PF09613_consen   89 YALGDPSWRR-YADEVLESGA-DPDARALV  116 (160)
T ss_pred             HHcCChHHHH-HHHHHHhcCC-ChHHHHHH
Confidence            9999987532 2334555544 45544333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.76  E-value=0.0029  Score=47.53  Aligned_cols=90  Identities=12%  Similarity=-0.017  Sum_probs=46.5

Q ss_pred             hhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHh---cccHHHHHHHHHH-HHccCCCcHHHHHHHHHHHHH
Q 029105           34 SGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAE---DGKFREALGKWEA-ALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-~l~~~~~~~~~~~~la~~~~~  103 (199)
                      +|....+|+.-+...+..      ..+..+.+...+|.++-+   .|+.++|+..+.. .....+.+++.+..+|.+|-.
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            444445555544444433      123344455555555555   5666666666655 334444555556666655532


Q ss_pred             ---------cCCHHHHHHHHHHHhhcccc
Q 029105          104 ---------LGDAWNALKAATRATELEQS  123 (199)
Q Consensus       104 ---------~~~~~~A~~~~~~al~~~p~  123 (199)
                               ....++|+..|.++.+++|+
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence                     12255566666666666543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.74  E-value=0.002  Score=47.14  Aligned_cols=129  Identities=21%  Similarity=0.093  Sum_probs=97.5

Q ss_pred             chhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHcC-------CH
Q 029105           40 KNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPEN-AVLHEQKAQVLLELG-------DA  107 (199)
Q Consensus        40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~-------~~  107 (199)
                      +..+|...|........+.+.+.+|.++..    ..+..+|..+|+++....... ....+.+|.++..-.       +.
T Consensus        92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~  171 (292)
T COG0790          92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD  171 (292)
T ss_pred             cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence            466777777766666677788889998887    458999999999998875444 344778888876541       23


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      ..|+..|.++....  ++.+.+.+|.+|..    ..++.+|..+|.++.+...  ..+...++ ++...|
T Consensus       172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            37888888887764  67788999988865    3478999999999998877  77788888 555555

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.74  E-value=0.00085  Score=39.85  Aligned_cols=67  Identities=24%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--HHHHHHHHHHHHhcCChH
Q 029105           76 ALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW--AEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        76 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~  142 (199)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++  ..+.-.+-.++..+|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            3566788899999999999999999999999999999999999998865  445455555555555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.73  E-value=0.003  Score=47.38  Aligned_cols=124  Identities=16%  Similarity=0.179  Sum_probs=101.1

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cc-----
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP----ENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQ-----  122 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p-----  122 (199)
                      .......+...+.+....|.++.|...+.++....+    ..+.+.+..+..+...|+..+|+..++..+.. ..     
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            445677899999999999999999999999887652    24677888999999999999999999888871 00     


Q ss_pred             ----------------------------ccHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          123 ----------------------------SWAEAWITLGRAQLNF------GEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       123 ----------------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                                                  ....++..+|......      +..++++..|.+++..+|....+|..+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        1234567777777777      888999999999999999999999999988


Q ss_pred             HHHHhhhh
Q 029105          169 LHLVKRRK  176 (199)
Q Consensus       169 ~~~~~~~~  176 (199)
                      +...-..+
T Consensus       302 ~~~~~~~~  309 (352)
T PF02259_consen  302 NDKLLESD  309 (352)
T ss_pred             HHHHHHhh
Confidence            87764433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.72  E-value=0.0033  Score=38.91  Aligned_cols=91  Identities=23%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             hhHHHhcccHHHHHHHHHHHHccCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------cccc
Q 029105           64 GNNLAEDGKFREALGKWEAALNLRPE------------NAVLHEQKAQVLLELGDAWNALKAATRATEL-------EQSW  124 (199)
Q Consensus        64 ~~~~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~  124 (199)
                      |.-.+..|-|++|...++++++....            +..++-.|+..+..+|+|++++....+++..       +.+.
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde   95 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE   95 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence            34456678899999999999876432            2467888999999999999999888887754       4444


Q ss_pred             HH----HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          125 AE----AWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       125 ~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ..    +.+..|..+..+|+.++|+..|+.+.+.
T Consensus        96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            43    4568899999999999999999987653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.71  E-value=0.0049  Score=48.95  Aligned_cols=130  Identities=14%  Similarity=0.081  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---------
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPE----NAVLHEQKAQVLLELGDAWNALKAATRATELEQ---------  122 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------  122 (199)
                      ....|..+|..|...|+.+.|...|+++....-.    -..+|...|..-....+++.|+.+.+++...-.         
T Consensus       386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~  465 (835)
T KOG2047|consen  386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN  465 (835)
T ss_pred             hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence            3457788888899999999999999988876432    257788888888888888999888888876511         


Q ss_pred             ---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          123 ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       123 ---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                               .+...|..++......|-++.....|.+++.+.--.|.+..|.|..+....-++++.+.+-..
T Consensus       466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErg  537 (835)
T KOG2047|consen  466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERG  537 (835)
T ss_pred             CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence                     123467777777778888888888888888888888888888888888888888877655433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.65  E-value=0.002  Score=42.28  Aligned_cols=85  Identities=18%  Similarity=0.049  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..+..+..+-...++.+.+...+..+-.+.|..+..-..-|.++...|++.+|+..++.+....|..+.+...++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44556666677888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhhh
Q 029105          172 VKRRK  176 (199)
Q Consensus       172 ~~~~~  176 (199)
                      +++..
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            88754

>smart00028 TPR Tetratricopeptide repeats

Probab=97.62  E-value=0.00012  Score=33.85  Aligned_cols=31  Identities=42%  Similarity=0.750  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      ++..+|.++..+|+++.|+.+++++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555566666666666666666666555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.0016  Score=45.62  Aligned_cols=93  Identities=19%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------ccccHHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATEL------EQSWAEAWI  129 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~  129 (199)
                      ..+.-....-++++|+..|++++.+-..+      ...+...++++.+..++.+|-..+.+-...      .|+....+.
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v  194 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV  194 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence            33333344445555555555544432211      133334445555555555554444332221      122222333


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          130 TLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ....+|....+|..|..+++..-++
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcC
Confidence            3334444445555555555554443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.53  E-value=0.0021  Score=51.39  Aligned_cols=127  Identities=17%  Similarity=-0.017  Sum_probs=86.8

Q ss_pred             hhhhhhcccccchhhHHHHHHHHhhHHHhc-----ccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcC-----
Q 029105           41 NDDNNEHQEPFDAKQLALSFEAQGNNLAED-----GKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELG-----  105 (199)
Q Consensus        41 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~-----  105 (199)
                      ...+...++.+....+..+...+|.+++.-     .+.+.|+.+++.+...     .-.++.+.+.+|.+|.+..     
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            445666666665556677777778777654     6788888888887661     1114556777888887643     


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ++..|+.++.++-..  +++.+.+.+|.++..-.   ++..|..+|..|...  .+..+...++.|+..
T Consensus       308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            567788888887765  44567788888877655   567888888877653  456677777777654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0034  Score=45.15  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      ...-..-+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+...
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            3445566777788999999999999999999999999999999999999999998877654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.47  E-value=0.0098  Score=37.76  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105           91 AVLHEQKAQVLLELG---DAWNALKAATRATE-LEQS-WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus        91 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      ....++++.++....   +..+.+.+++..+. -+|. .-+..+.++..+.+.++|+.++.+....++.+|++.++...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            455667777776543   45677788888875 4443 345677788888888888888888888888888888776555


Q ss_pred             HHHHHH
Q 029105          166 QTALHL  171 (199)
Q Consensus       166 ~~~~~~  171 (199)
                      -.+..+
T Consensus       112 ~~ied~  117 (149)
T KOG3364|consen  112 ETIEDK  117 (149)
T ss_pred             HHHHHH
Confidence            444443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.46  E-value=0.00026  Score=32.58  Aligned_cols=30  Identities=30%  Similarity=0.281  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQ  122 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  122 (199)
                      ++..+|.++...++++.|+..+++++.++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            345555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.45  E-value=0.0055  Score=46.09  Aligned_cols=118  Identities=20%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HhhcccccHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNL----RPENAVLHEQKAQVLLE---LGDAWNALKAATR-ATELEQSWAEA  127 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~  127 (199)
                      .+.+...+-..|....+|+.-+..++..-.+    -++.+.+...+|.++-+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3455666777788899999998888887665    44556777888888888   9999999999999 44556778999


Q ss_pred             HHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          128 WITLGRAQLNF---------GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       128 ~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      +..+|.+|...         ...++|+.+|.++.+++|+.- .=.|++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCC
Confidence            99999998642         246899999999999997642 23455555555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.45  E-value=0.0044  Score=46.75  Aligned_cols=124  Identities=16%  Similarity=-0.013  Sum_probs=91.7

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------------C------------CCcH---HHHHHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------------R------------PENA---VLHEQKAQVLL  102 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~------------~~~~---~~~~~la~~~~  102 (199)
                      ..|.+..++..++.++..+|+.+.|.+.+++++-.              +            +.|-   .+.+.....+.
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~  114 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG  114 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999988632              1            1121   44556677888


Q ss_pred             HcCCHHHHHHHHHHHhhcccc-cHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHhhh
Q 029105          103 ELGDAWNALKAATRATELEQS-WAEA-WITLGRAQLNFGEPDKAIESFERALAIKP-----DSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~  175 (199)
                      +.|.+..|+++++-.+.++|. +|-. .+.+=....+.++++-=++.++.......     .-|..-+.++.++..+++.
T Consensus       115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~  194 (360)
T PF04910_consen  115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE  194 (360)
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence            999999999999999999998 6643 44444455677888877777776554211     1234556777778777777

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.0012  Score=44.62  Aligned_cols=96  Identities=21%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             hhcchhhhhccchhhhhhccccc-chhh----HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-DAKQ----LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      ..++..+...+++++|+..+..+ ..|.    .+-+-..++.+...+|++++|+..+.....- .-.+..-...|.++..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence            46677888899999999998866 2222    3445678999999999999999888765332 1123456778999999


Q ss_pred             cCCHHHHHHHHHHHhhcccccH
Q 029105          104 LGDAWNALKAATRATELEQSWA  125 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~  125 (199)
                      .|+-.+|...|++++...++.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         172 KGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             cCchHHHHHHHHHHHHccCChH
Confidence            9999999999999999975543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.38  E-value=0.0004  Score=48.00  Aligned_cols=59  Identities=27%  Similarity=0.180  Sum_probs=43.1

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW  124 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  124 (199)
                      .....++.+.|.+.|.+++.+.|....-|+.+|....+.|+++.|...|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            44556777777777777777777777777777777777777777777777777777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.38  E-value=0.0024  Score=52.17  Aligned_cols=116  Identities=26%  Similarity=0.198  Sum_probs=83.2

Q ss_pred             ccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHH----------HccCC----------CcHHHHHHH
Q 029105           38 LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA----------LNLRP----------ENAVLHEQK   97 (199)
Q Consensus        38 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~~----------~~~~~~~~l   97 (199)
                      .|.+++|.+.-+.-+.-..-..+++.+.-+...++.+.|+++|+++          +.-+|          .++.+|...
T Consensus       839 ~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WW  918 (1416)
T KOG3617|consen  839 QGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWW  918 (1416)
T ss_pred             cccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHH
Confidence            3444444444333222223456788899999999999999999875          22233          235678888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhc---------------------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105           98 AQVLLELGDAWNALKAATRATEL---------------------EQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      |..+-..|+.+.|+.+|..|-..                     ...+..+-|.+|..|...|++.+|+..|.++-.
T Consensus       919 gqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  919 GQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999998876532                     134566789999999999999999988876643

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.35  E-value=0.0015  Score=49.12  Aligned_cols=87  Identities=16%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCc------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPEN------------------AVLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      .-|...+++++|..|...|..++++..+-                  ..+-..+..||..+++.+-|+....+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            34455566666666666666666542110                  022234555555555555555555555555555


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHH
Q 029105          124 WAEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      +..-+...|.|+..+.+|.+|-..+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555554433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.33  E-value=0.0048  Score=46.28  Aligned_cols=128  Identities=22%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             hcchhhhhccchhhhhhcccccch------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CC-C------------
Q 029105           30 EHGLSGAELEKNDDNNEHQEPFDA------KQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RP-E------------   89 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~-~------------   89 (199)
                      ..+....+.|.++.|...+..+..      +..+.+....+..+...|+..+|+..++..+.. .. .            
T Consensus       151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~  230 (352)
T PF02259_consen  151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSG  230 (352)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhc
Confidence            346667778899988887776622      226788889999999999999999999888771 10 0            


Q ss_pred             --------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh--
Q 029105           90 --------------------NAVLHEQKAQVLLEL------GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP--  141 (199)
Q Consensus        90 --------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--  141 (199)
                                          ...++..+|......      +..++++..|.+++..+|....+|+.+|..+...-..  
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  231 LLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence                                025666677777777      8899999999999999999999999999887654211  


Q ss_pred             ---------------HHHHHHHHHHHhcCCC
Q 029105          142 ---------------DKAIESFERALAIKPD  157 (199)
Q Consensus       142 ---------------~~A~~~~~~al~~~p~  157 (199)
                                     ..|+..|-+++...+.
T Consensus       311 ~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  311 REKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                           3477777777777776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.30  E-value=0.0023  Score=50.30  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             HHHhhHH-HhcccHHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           61 EAQGNNL-AEDGKFREALGKWEAALNLRPENA--VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        61 ~~~~~~~-~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      ..++..| ..+|+..+|+.++..++-..|.+.  .+...+|.++.++|...+|--++..|+.-.|.-...++.+|.++..
T Consensus       216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am  295 (886)
T KOG4507|consen  216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM  295 (886)
T ss_pred             HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence            3444444 567999999999999998877664  5778899999999999999989988888777766678999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHH
Q 029105          138 FGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       138 ~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      ++.+......|..+.+.+|......
T Consensus       296 l~~~N~S~~~ydha~k~~p~f~q~~  320 (886)
T KOG4507|consen  296 LGEYNHSVLCYDHALQARPGFEQAI  320 (886)
T ss_pred             HhhhhhhhhhhhhhhccCcchhHHH
Confidence            9999999999999999999875543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.0051  Score=48.83  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .++.+-|.-+++..+|..++++|...+..-|.+      +.....++.||....+.+.|.+++++|-+.+|.++-.....
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456677888899999999999999998877665      46678899999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhc
Q 029105          132 GRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      -.+....|.-++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88888889999999888776654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.025  Score=37.77  Aligned_cols=140  Identities=16%  Similarity=0.088  Sum_probs=101.2

Q ss_pred             chhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLE  103 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~  103 (199)
                      +..+.+.+..++|+.-|..+    ....-.-+....+.+....|+-..|+..|..+-.-.|-.    ..+...-+..+..
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence            45556677788888877766    222235567788999999999999999999976654432    1334455667778


Q ss_pred             cCCHHHHHHHHHHHh-hcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          104 LGDAWNALKAATRAT-ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       104 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      .|.|+.-..-.+..- .-+|-...+.-.||..-.+.|++..|.++|.+... +...|....+.+.+...+
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl  213 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL  213 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence            899988766554433 23455566788899999999999999999998877 666667677777766543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.026  Score=43.57  Aligned_cols=155  Identities=12%  Similarity=-0.037  Sum_probs=105.1

Q ss_pred             hhhhhccchhhhhhccccc-----ch-------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF-----DA-------KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK   97 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l   97 (199)
                      ....-.|++.+|++.....     ..       ...+.++..+|.-...-+.++.|...|..+.+.....   +.+..++
T Consensus       331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl  410 (629)
T KOG2300|consen  331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL  410 (629)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence            3445578888888765444     12       2356677788888888889999999999888764432   3556778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcccc-------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHH
Q 029105           98 AQVLLELGDAWNALKAATRATELEQS-------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDD  164 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~  164 (199)
                      |.+|...|+-+.-.+.++.+-..+..       ...+++..|...+.++++.+|.....+.++....      ....+..
T Consensus       411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL  490 (629)
T KOG2300|consen  411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL  490 (629)
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence            99999888765554444443322211       1335677788888899999999999998887621      1234566


Q ss_pred             HHHHHHHHhhhhhhhhhcccccc
Q 029105          165 RQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      |+.+..-.|+..++..-..+++.
T Consensus       491 Ls~v~lslgn~~es~nmvrpamq  513 (629)
T KOG2300|consen  491 LSHVFLSLGNTVESRNMVRPAMQ  513 (629)
T ss_pred             HHHHHHHhcchHHHHhccchHHH
Confidence            77777788888887766655544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.24  E-value=0.012  Score=39.73  Aligned_cols=103  Identities=18%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--ccH--
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQ--SWA--  125 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~--  125 (199)
                      ....-.++..+|..|.+.|+.+.|++.|.++.......   ...+..+-.+.+..+++.....+..++-..-.  .++  
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~  111 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER  111 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence            33456788899999999999999999999987765433   36677788888889999999999888876532  222  


Q ss_pred             --HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          126 --EAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       126 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                        .....-|..++..++|..|-..|-.+..-.
T Consensus       112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence              234556777888999999999988776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.20  E-value=0.00079  Score=46.59  Aligned_cols=56  Identities=36%  Similarity=0.582  Sum_probs=29.8

Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      +.++.+.|.+.|.+++.+.|.+...|+.+|......|+++.|.+.|++.++++|.+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34455555555555555555555555555555555555555555555555555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.19  E-value=0.0064  Score=37.23  Aligned_cols=87  Identities=20%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccccH---HHHHHHHHHHHhcCC-----------hHHHHHHHHHHHhcCCCcHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSWA---EAWITLGRAQLNFGE-----------PDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      ++.-++..|++-+|+++.+..+..++++.   ..+..-|.++..+..           .-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46678899999999999999999988765   556677887765432           2468999999999999998888


Q ss_pred             HHHHHHHHHHhhhhhhhhhcc
Q 029105          163 DDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      +.+|.=+.-...|+++.....
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak  102 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAK  102 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHH
Confidence            888877666666776655443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.18  E-value=0.019  Score=42.81  Aligned_cols=141  Identities=11%  Similarity=-0.106  Sum_probs=103.7

Q ss_pred             chhhHHHHHHHHhhHHHhc------------ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105           52 DAKQLALSFEAQGNNLAED------------GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      .+|.+..+|..+....-..            .-.+.-+..+++|++.+|++..++..+-.+..+.-+.++...-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5778888887776554332            1245667889999999999999999988888899999999999999999


Q ss_pred             cccccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCC------------------cHHHHHHHHHHHHHHhhhhhh
Q 029105          120 LEQSWAEAWITLGRAQLN---FGEPDKAIESFERALAIKPD------------------SEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       120 ~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      .+|+++..|...-.....   .-.++.....|.+++..-..                  -..+...+.......|..+.|
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A  173 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA  173 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence            999999988766554433   33466777777777754210                  012456666667788888888


Q ss_pred             hhhcccccchhhhc
Q 029105          179 HLSGLSNDANRFVV  192 (199)
Q Consensus       179 ~~~~~~~~~~~~~~  192 (199)
                      .....+.+|.++-.
T Consensus       174 va~~Qa~lE~n~~~  187 (321)
T PF08424_consen  174 VALWQALLEFNFFR  187 (321)
T ss_pred             HHHHHHHHHHHcCC
Confidence            88777777766643

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.017  Score=45.41  Aligned_cols=110  Identities=25%  Similarity=0.114  Sum_probs=90.7

Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhcccccHHHHHHH------HHHH
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR-ATELEQSWAEAWITL------GRAQ  135 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~  135 (199)
                      ++..+...+....+.-.+..++..+|.+..+..++|......|....++..+.. +....|++......+      |...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            577778888998999999999999999999999999998887777666655554 888889887766555      8888


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ..+|+..++....++++.+.|.++.....+.....+.
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            8899999999999999999999987766666554433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.15  E-value=0.029  Score=36.37  Aligned_cols=86  Identities=13%  Similarity=-0.042  Sum_probs=73.7

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      ..+......-...++++++...+...--+.|+.+.+-..-|.++...|+|.+|+..++.+..-.+..+-..-.++.|+.-
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34445555556689999999999988889999999999999999999999999999999998888888888889999999


Q ss_pred             cCChHH
Q 029105          138 FGEPDK  143 (199)
Q Consensus       138 ~~~~~~  143 (199)
                      +|+.+-
T Consensus        91 l~Dp~W   96 (153)
T TIGR02561        91 KGDAEW   96 (153)
T ss_pred             cCChHH
Confidence            998864

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.15  E-value=0.013  Score=37.97  Aligned_cols=83  Identities=13%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      .......-...++.+.+...+...--+.|+.+.....-|.++...|++.+|+..++....-.+..+.....++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444558999999999988888999999999999999999999999999999999998888988889999998888


Q ss_pred             hhh
Q 029105          174 RRK  176 (199)
Q Consensus       174 ~~~  176 (199)
                      +..
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.14  E-value=0.016  Score=40.36  Aligned_cols=91  Identities=26%  Similarity=0.282  Sum_probs=64.9

Q ss_pred             HhcccHHHHHHHHHHHHcc----CCC---cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhhccc------ccHHH
Q 029105           68 AEDGKFREALGKWEAALNL----RPE---NAVLHEQKAQVLLELGDA-------WNALKAATRATELEQ------SWAEA  127 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~----~~~---~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~  127 (199)
                      .....+++|++.|.-|+-.    .+.   -+.++..+|-+|...|+-       ..|++.|.+++....      +....
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3445677888877776532    112   256778889999888884       455566666664432      23567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          128 WITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      .+.+|.+..+.|++++|..+|.+++.....+
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            8899999999999999999999999875443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.12  E-value=0.055  Score=40.84  Aligned_cols=148  Identities=18%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             chhhhhccchhhhhhccccc-chhhHH-HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF-DAKQLA-LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN  109 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~  109 (199)
                      +..-+-.|++++|.+.|+.. .+|+.- --+..+-..-.+.|..+.|..+-+.+....|.-+.++...-...+..|+|+.
T Consensus       127 AQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~  206 (531)
T COG3898         127 AQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG  206 (531)
T ss_pred             HHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence            34455678888888888776 455422 1122222333567888889999999999999888888888888888999999


Q ss_pred             HHHHHHHHhhc---ccccH---HHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          110 ALKAATRATEL---EQSWA---EAWITLGRAQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       110 A~~~~~~al~~---~p~~~---~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      |++..+.....   .++..   .+-..-+.... -.-+...|...-.+++++.|+...+-..-+..+.+.|+..++.
T Consensus       207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence            98887655432   22211   11111111111 1234556666666666777766666666666666666655543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.12  E-value=0.033  Score=44.52  Aligned_cols=56  Identities=20%  Similarity=0.042  Sum_probs=31.0

Q ss_pred             hcchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN   85 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   85 (199)
                      ..|..|...|+.+.|...|.++      ...+-+.+|..-|..-....+++.|+.+.+.+..
T Consensus       392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            3455566666666666666655      1122345555555555555566666665555543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.12  E-value=0.02  Score=42.63  Aligned_cols=92  Identities=14%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           78 GKWEAALNLRPENAVLHEQKAQVLLELGD------------AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      ..+++.+..+|.+..+|..+....-..-.            .+.-+.++++|++.+|++...+..+-.+..+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788899999999999988876554432            456678999999999999999988888888888999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          146 ESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      +-+++++..+|++...|...-...
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHH
Confidence            999999999999998877655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.12  E-value=0.048  Score=39.76  Aligned_cols=120  Identities=16%  Similarity=0.035  Sum_probs=83.6

Q ss_pred             hccchhhhhhccccc------chhh----HHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccC----CCc----------H
Q 029105           37 ELEKNDDNNEHQEPF------DAKQ----LALSFEAQGNNLAEDG-KFREALGKWEAALNLR----PEN----------A   91 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~------~~~~----~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~----~~~----------~   91 (199)
                      ..|+++.|...+.++      ..|.    -...+++.|......+ +++.|..++++++++-    +..          .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            456777777766666      2332    3567888999999999 9999999999988772    111          2


Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105           92 VLHEQKAQVLLELGDAWN---ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP  156 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  156 (199)
                      .++..++.++...+.++.   |....+.+-...|+.+..+...-.+....++.+++.+.+.+++..-+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            567778888888877654   44444445455677777765555555557888888888888887644

It is also involved in sporulation [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.0045  Score=47.65  Aligned_cols=78  Identities=14%  Similarity=0.042  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      .+.++..|.....-..+.+.+.+-...|.+++..+|+++++|..-|.-.+..+. .+.|...+.++++.+|+++..|..
T Consensus       101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            344677777777766777779999999999999999999999999999888877 999999999999999999987753

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.07  E-value=0.0018  Score=46.95  Aligned_cols=86  Identities=9%  Similarity=0.017  Sum_probs=70.1

Q ss_pred             HHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105           80 WEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT-LGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus        80 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      |.++-...|+++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334445578888888888888888888999999999999999999998876 4455677889999999999999999999


Q ss_pred             HHHHHHH
Q 029105          159 EEARDDR  165 (199)
Q Consensus       159 ~~~~~~l  165 (199)
                      |..|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            8877554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.05  E-value=0.012  Score=41.02  Aligned_cols=96  Identities=15%  Similarity=-0.007  Sum_probs=65.9

Q ss_pred             ccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHH-------HHHHHHHHHccCCC------cHHHHH
Q 029105           38 LEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFRE-------ALGKWEAALNLRPE------NAVLHE   95 (199)
Q Consensus        38 ~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~   95 (199)
                      ...+++|++.|.-+         .....+..+..+|.+|...|+.+.       |+..|.+++.....      ...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            34556677665544         223457788899999999988554       55556665544322      257888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcccccH-HHHHHHHH
Q 029105           96 QKAQVLLELGDAWNALKAATRATELEQSWA-EAWITLGR  133 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~  133 (199)
                      .+|.+..+.|++++|+.+|.+++.....+. .....+|.
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            999999999999999999999997643322 34444443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.02  E-value=0.013  Score=37.24  Aligned_cols=79  Identities=16%  Similarity=-0.014  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhHHHhcc---cHHHHHHHHHHHHc-cCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           56 LALSFEAQGNNLAEDG---KFREALGKWEAALN-LRPEN-AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      .....++++.++....   +..+.+.+++..+. -+|.. -.+.+.++..+++.++|+.++.+.+..++..|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3456677777776654   56678899999986 44543 4788999999999999999999999999999999887655


Q ss_pred             HHHH
Q 029105          131 LGRA  134 (199)
Q Consensus       131 lg~~  134 (199)
                      .-.+
T Consensus       111 k~~i  114 (149)
T KOG3364|consen  111 KETI  114 (149)
T ss_pred             HHHH
Confidence            4433

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.00  E-value=0.014  Score=49.98  Aligned_cols=154  Identities=18%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             hhcchhhhhccchhhhhh------ccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCcH
Q 029105           29 QEHGLSGAELEKNDDNNE------HQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~   91 (199)
                      .+.|......|.+.++.+      .+...   ..|..+..+..++.++...|+.++|+..-.++.-+        .|+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            455666677777777766      33322   67888999999999999999999999988776543        34556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------  157 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------  157 (199)
                      ..+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.|+.....      
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            78899999999999999999999888865        4555566788999999999999999999999986422      


Q ss_pred             --cHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          158 --SEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       158 --~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                        ....+..++.....++++..|....
T Consensus      1096 l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence              2445667777777777777665443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.00  E-value=0.015  Score=46.54  Aligned_cols=125  Identities=14%  Similarity=-0.028  Sum_probs=91.6

Q ss_pred             cchhhhhhcccccch-------hhHHHHHHHHhhHHHhcc-----cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-
Q 029105           39 EKNDDNNEHQEPFDA-------KQLALSFEAQGNNLAEDG-----KFREALGKWEAALNLRPENAVLHEQKAQVLLELG-  105 (199)
Q Consensus        39 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-  105 (199)
                      .+.+.|+..+..+..       ...+.+.+.+|.+|.+..     +...|+..|.++....  ++.+.+.+|.++..-. 
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK  340 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence            456667776665522       223446778899988753     6788999999998774  5677788999988655 


Q ss_pred             --CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          106 --DAWNALKAATRATELEQSWAEAWITLGRAQLNF----GEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       106 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                        ++..|.++|..|...  .+..+.+.+|.||..-    -+...|..++.++.+..  ++.+...++..+
T Consensus       341 ~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             cccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence              578999999998764  6788999999998753    46789999999999987  344444444333

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.016  Score=41.13  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=73.7

Q ss_pred             hhhhhccccc--chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 029105           42 DDNNEHQEPF--DAKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW-NALKAATRA  117 (199)
Q Consensus        42 ~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~a  117 (199)
                      ..|+.....+  .+|.+-.+|...-.++... .+..+-++++...+.-+|.+.++|...-.+....|++. .-++....+
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~  139 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM  139 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence            3344443333  5666666666555555443 35666777888888888888888888877777788777 777888888


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      +..+..+..+|...-.+...-+.++.-+.+..+.++.
T Consensus       140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~  176 (318)
T KOG0530|consen  140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE  176 (318)
T ss_pred             HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            8888877777776666655555554444444444433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.95  E-value=0.024  Score=42.87  Aligned_cols=129  Identities=14%  Similarity=0.069  Sum_probs=95.4

Q ss_pred             hhcchhhhhccchhhhhhccccc-------------------------------chhhHHHHHHHHhhHHHhcccHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-------------------------------DAKQLALSFEAQGNNLAEDGKFREAL   77 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~   77 (199)
                      .+++.++...|+...|.+..+++                               .+...-.+++.....+.+.|-+..|.
T Consensus        44 lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAl  123 (360)
T PF04910_consen   44 LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTAL  123 (360)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45678888888888777655444                               12223346677788889999999999


Q ss_pred             HHHHHHHccCCC-cH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-----cHHHHHHHHHHHHhcCCh---------
Q 029105           78 GKWEAALNLRPE-NA-VLHEQKAQVLLELGDAWNALKAATRATELEQS-----WAEAWITLGRAQLNFGEP---------  141 (199)
Q Consensus        78 ~~~~~~l~~~~~-~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~---------  141 (199)
                      ++.+-.+.++|. |+ .+...+-....+.++|+--+..++........     -|..-+..+.++...++-         
T Consensus       124 E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~  203 (360)
T PF04910_consen  124 EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQS  203 (360)
T ss_pred             HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccccc
Confidence            999999999998 66 44555556666888998888888776552111     234667788888888888         


Q ss_pred             ------HHHHHHHHHHHhcCCC
Q 029105          142 ------DKAIESFERALAIKPD  157 (199)
Q Consensus       142 ------~~A~~~~~~al~~~p~  157 (199)
                            +.|...+.+|+...|.
T Consensus       204 ~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  204 GRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             ccccchhHHHHHHHHHHHHhHH
Confidence                  8899999999887664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0028  Score=46.64  Aligned_cols=121  Identities=21%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRP-------------------ENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      ....+...+..++++.|..-+.+++..-.                   .-.....+++.+-...+.+..|+.....+++.
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            34456667777888888777777654311                   11245667889999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      ++....+++..+..+....++++|++.++.+....|++......+..+-....++.+-..
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~  364 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQK  364 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888777777766666555333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.92  E-value=0.013  Score=44.35  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcC
Q 029105          128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVG  193 (199)
Q Consensus       128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  193 (199)
                      -..+..||..+++.+-|+...-+.+.++|.++.-+...+.|...+.+|.+|.+++.-+.-..|..|
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            346889999999999999999999999999999999999999999999999998877777777765

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.016  Score=41.39  Aligned_cols=72  Identities=21%  Similarity=0.064  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      ....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            344555667788899999999999999999999988999999999999999999999999999998876544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.85  E-value=0.0037  Score=30.89  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      ++.++|.++..+|++++|+.++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4455555555555555555555555544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.84  E-value=0.07  Score=39.06  Aligned_cols=126  Identities=17%  Similarity=0.054  Sum_probs=90.5

Q ss_pred             hhcchhhhh----ccchhhhhhcccccchhhHHH---HHHHHhhHHHhcc-------cHHHHHHHHHHHHccCCCcHHHH
Q 029105           29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLAL---SFEAQGNNLAEDG-------KFREALGKWEAALNLRPENAVLH   94 (199)
Q Consensus        29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~   94 (199)
                      +.+|..+..    ..++.+|...|.++-...++.   +.+.+|.++..-.       +...|...|.++....  ++.+.
T Consensus       113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~  190 (292)
T COG0790         113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ  190 (292)
T ss_pred             HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence            345555554    347889999998883333333   3777777776642       3347888998887765  67888


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhcC
Q 029105           95 EQKAQVLLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG---------------EPDKAIESFERALAIK  155 (199)
Q Consensus        95 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---------------~~~~A~~~~~~al~~~  155 (199)
                      ..+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...|..++..+....
T Consensus       191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  267 (292)
T COG0790         191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG  267 (292)
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence            899988865    4578999999999998866  78888899 666655               6667777777776665


Q ss_pred             CCcH
Q 029105          156 PDSE  159 (199)
Q Consensus       156 p~~~  159 (199)
                      +...
T Consensus       268 ~~~~  271 (292)
T COG0790         268 FDNA  271 (292)
T ss_pred             ChhH
Confidence            5433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.83  E-value=0.0034  Score=31.03  Aligned_cols=30  Identities=37%  Similarity=0.371  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ..++.++|.+|..+|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356889999999999999999999999876

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.015  Score=41.54  Aligned_cols=76  Identities=18%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      .....+=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..++..|+.+.+-...+.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            3444555677889999999999999999999999999999999999999999999999999999998876554443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.11  Score=37.16  Aligned_cols=116  Identities=21%  Similarity=0.189  Sum_probs=98.6

Q ss_pred             hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH-
Q 029105           65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL-GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD-  142 (199)
Q Consensus        65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-  142 (199)
                      .++.+...-..|+..-..++.++|.+..+|...-.++..+ .+..+-+.++..+++-+|.+.++|...-.+....|++. 
T Consensus        51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            3445556677899999999999999998888877777654 45678889999999999999999999999999999988 


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      .-+...+.++..+..+-.+|...--+....+.++.-..
T Consensus       131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~  168 (318)
T KOG0530|consen  131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA  168 (318)
T ss_pred             chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            88899999999999999999988888888888776444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.78  E-value=0.13  Score=39.72  Aligned_cols=123  Identities=21%  Similarity=0.034  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhHHHhccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHhhc---------cc-
Q 029105           56 LALSFEAQGNNLAEDGK-FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK--AATRATEL---------EQ-  122 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p-  122 (199)
                      -+.-+...|.-+...|. -++|+..++.++...|.+..+....-  .+-...|.+|+.  .+.+.+.+         .| 
T Consensus       378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            34555566777777777 77888888888888877754322111  111122233321  11111111         11 


Q ss_pred             --ccHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          123 --SWAEAWITL--GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       123 --~~~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                        .+.+.-..+  |..++..|+|.++.-+-.-..++.| .+.++..+|.|....++|.+|-..
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence              122222223  2344566777776666666666666 566677777777777777666543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.73  E-value=0.055  Score=44.76  Aligned_cols=117  Identities=15%  Similarity=-0.038  Sum_probs=83.8

Q ss_pred             hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----------ccc----------cc
Q 029105           65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE----------LEQ----------SW  124 (199)
Q Consensus        65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------~~p----------~~  124 (199)
                      ..|...|.|++|.+..+.--+++-  -..|++.+.-+...++.+.|+++|+++-.          -+|          .+
T Consensus       834 KlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d  911 (1416)
T KOG3617|consen  834 KLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD  911 (1416)
T ss_pred             HHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence            345556677777665544322221  35678889999999999999999987532          233          24


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAI---------------------KPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      +..|.-.|......|+.+.|+..|..+-..                     ...+..+-+.|++-|...|+..+|...+-
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            556778899999999999999998877543                     23455677889999999999988876553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.70  E-value=0.038  Score=34.40  Aligned_cols=89  Identities=20%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             chhhhhccchhhhhhccccc--------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc-------cCCCc
Q 029105           32 GLSGAELEKNDDNNEHQEPF--------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN-------LRPEN   90 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~~~~   90 (199)
                      |...+..|-|++|...++++              -..-++-.+..++..+...|+|++++....+++.       ++.+.
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde   95 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE   95 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence            44455567777777776665              1223566777899999999999998877777764       45554


Q ss_pred             H----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           91 A----VLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        91 ~----~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .    .+.+..|..+-..|+.++|+..|+.+-++
T Consensus        96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3    34567888999999999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.69  E-value=0.0032  Score=45.69  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ-KAQVLLELGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      ..++++..|...+.--...|-+.+-...|.+++..+|.+++.|.. -+--+...++++.+...+.++++++|++|..|+.
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            456788888888888888889999999999999999999999877 4455678899999999999999999999988764


Q ss_pred             H
Q 029105          131 L  131 (199)
Q Consensus       131 l  131 (199)
                      .
T Consensus       182 y  182 (435)
T COG5191         182 Y  182 (435)
T ss_pred             H
Confidence            3

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=96.65  E-value=0.012  Score=42.59  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=36.0

Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           76 ALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        76 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      |..+|.+|+.+.|++...++.+|.+....|+.-.|+-+|-+++-...-.+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666665433345556666655555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.63  E-value=0.024  Score=47.90  Aligned_cols=100  Identities=18%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLEL----G---DAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ....++...+.|++|+..|++.....|+..   .+.+..|.....+    |   .+++|+..|++.. -.|.-|--+...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence            345667778899999999999999998764   6778888887753    2   4778888887654 346667778889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      |.+|..+|++++-++++.-+++..|.+|..-
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            9999999999999999999999999987643

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.57  E-value=0.22  Score=39.62  Aligned_cols=128  Identities=13%  Similarity=-0.027  Sum_probs=108.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWIT  130 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~  130 (199)
                      ..+.+...|.....--...|+++...-.|++++--......+|...+......|+.+-|-..+.++.++ .|..+..+..
T Consensus       292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            444556677777777788999999999999999888888899999999999999999999888888876 4677888888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      -+..-...|++..|...++......|+...+-..-.....+.|..+.+.
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            8888899999999999999999888998887777777777777777655

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.049  Score=42.16  Aligned_cols=144  Identities=12%  Similarity=0.051  Sum_probs=101.0

Q ss_pred             hhhcchhhhhccchhhhhhccccc---chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------HH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF---DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----------AV   92 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------~~   92 (199)
                      .+-+|..-...+.++.|...|..+   ....+  +-...++|..|.+.|+-+.--+..+   .+.|.+          ..
T Consensus       370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHH
Confidence            356688888888999999999887   23333  3345578999999887554433333   345543          36


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCcHHHH-
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIK---PDSEEAR-  162 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~-  162 (199)
                      +++..|...+.++++.+|...+.+.+++...      ....+..+|.+....|+..++.....-++.+.   |+.+.-+ 
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw  526 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW  526 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence            7788899999999999999999999987521      23456788999999999999999888887764   4443322 


Q ss_pred             --HHHHHHHHHHhh
Q 029105          163 --DDRQTALHLVKR  174 (199)
Q Consensus       163 --~~l~~~~~~~~~  174 (199)
                        .-+-.++...|+
T Consensus       527 s~si~~~L~~a~g~  540 (629)
T KOG2300|consen  527 SSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHhCc
Confidence              223345555555

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.56  E-value=0.084  Score=35.72  Aligned_cols=96  Identities=21%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCcHH----H
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPDKAIESFERALAIK--PDSEE----A  161 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~  161 (199)
                      ..++..+|..|.+.|+.+.|++.|.++......   ..+.++.+..+....+++......+.++-..-  +.+..    .
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            377889999999999999999999998876433   34567888888899999999999988887653  23332    3


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccccc
Q 029105          162 RDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       162 ~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ...-|..+...++|.+|...++...
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            3445566777889999988777654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.011  Score=45.99  Aligned_cols=91  Identities=15%  Similarity=0.043  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      ...-|.-.+..+.+..|+..|.+++...|.....+.+.+.+++..   |+.-.|+.....+++++|....+++.|+.++.
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~  456 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN  456 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence            333444445567788999999999999999999999999988875   56677888899999999999999999999999


Q ss_pred             HHhhhhhhhhhccc
Q 029105          171 LVKRRKHLHLSGLS  184 (199)
Q Consensus       171 ~~~~~~~a~~~~~~  184 (199)
                      .++++.+|....++
T Consensus       457 el~r~~eal~~~~a  470 (758)
T KOG1310|consen  457 ELTRYLEALSCHWA  470 (758)
T ss_pred             HHhhHHHhhhhHHH
Confidence            99999998875543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.48  E-value=0.15  Score=37.22  Aligned_cols=114  Identities=17%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             HHhcccHHHHHHHHHHHHccC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcc----c---c-------
Q 029105           67 LAEDGKFREALGKWEAALNLR----PEN----AVLHEQKAQVLLELG-DAWNALKAATRATELE----Q---S-------  123 (199)
Q Consensus        67 ~~~~~~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p---~-------  123 (199)
                      ...+|+++.|..++.++-...    |+.    ...+++.|......+ +++.|..+++++..+-    +   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999999876543    333    367788999999999 9999999999999872    1   1       


Q ss_pred             cHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          124 WAEAWITLGRAQLNFGEPD---KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      ....+..++.+|...+.++   +|....+.+-...|+.+..+..--.+....++.+++..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~  142 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE  142 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence            1235678888898888764   45556666666678877766444444444444444433

It is also involved in sporulation [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.15  Score=38.77  Aligned_cols=147  Identities=16%  Similarity=0.046  Sum_probs=98.8

Q ss_pred             cchhhh-hccchhhhhhccccc-----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC------CCcHH
Q 029105           31 HGLSGA-ELEKNDDNNEHQEPF-----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR------PENAV   92 (199)
Q Consensus        31 ~g~~~~-~~~~~~~A~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~   92 (199)
                      ++..++ ...++.+|...-...           .+--.+..++.+..++...|+...-...+...+...      ...+.
T Consensus       131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav  210 (493)
T KOG2581|consen  131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV  210 (493)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence            344443 356777777654443           223345677788888888888766666665554331      12246


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH------HH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATEL----EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE------AR  162 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~  162 (199)
                      +.+.+-.+|...+.|++|-....++.--    +.......+.+|.+..-+++|..|.++|-+|+...|.+..      ..
T Consensus       211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~  290 (493)
T KOG2581|consen  211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN  290 (493)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence            6777888999999999998888777622    1234566788999999999999999999999999997532      22


Q ss_pred             HHHHHHHHHHhhhhh
Q 029105          163 DDRQTALHLVKRRKH  177 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~  177 (199)
                      ..+..+-..+|.+.+
T Consensus       291 k~~ivv~ll~geiPe  305 (493)
T KOG2581|consen  291 KLMIVVELLLGEIPE  305 (493)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            223334445566554

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.45  E-value=0.031  Score=33.47  Aligned_cols=54  Identities=28%  Similarity=0.399  Sum_probs=33.8

Q ss_pred             HHcCCHHHHHHHHHHHhhccc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          102 LELGDAWNALKAATRATELEQ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .+.|+|.+|++.+.+......         ....+..++|.++...|++++|+..+++++++.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            356666666666655554421         123355667777777777777777777777664

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.39  E-value=0.037  Score=40.05  Aligned_cols=63  Identities=22%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      ..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            445555666666666666666666666666666666666666666666666666666655544

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.11  Score=41.19  Aligned_cols=111  Identities=20%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             ccHHHHHHHHHHHHccCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105           71 GKFREALGKWEAALNLRPENAVLHEQ--KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      +...-++..+...+.++|.++.++..  +...+...+....+......++..+|.+..+..++|......|..-.+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            34444777777788888888876443  4777777888889999999999999999999999999998888877777666


Q ss_pred             HH-HHhcCCCcHHHHHHH------HHHHHHHhhhhhhhhh
Q 029105          149 ER-ALAIKPDSEEARDDR------QTALHLVKRRKHLHLS  181 (199)
Q Consensus       149 ~~-al~~~p~~~~~~~~l------~~~~~~~~~~~~a~~~  181 (199)
                      .+ +....|.+.+....+      +.....+++..++...
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  164 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELA  164 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHH
Confidence            65 888999998887777      5555555555554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.28  E-value=0.18  Score=38.25  Aligned_cols=124  Identities=21%  Similarity=0.127  Sum_probs=88.8

Q ss_pred             hcchhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHc
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLEL  104 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~  104 (199)
                      ..|.+-...|+-..|.+...+.    .....+-++..-+..-...|+++.|.+-|+..+. +|..- --+..|-.-....
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~  167 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL  167 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence            3466666667766666655444    2334456667778888889999999999998776 44321 1122222333468


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      |..+.|..+.+++-..-|.-+-++...-......|+++.|++..+.....
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999999988877777777788899999999998766543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.05  Score=43.53  Aligned_cols=88  Identities=13%  Similarity=0.043  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      -+-|.-+++..+|..+++.|...+.--|.      .......++.||..+.+.+.|.+++++|-+.+|.++-.......+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            34577788999999999999999987664      345678899999999999999999999999999998887777777


Q ss_pred             HHHHhhhhhhhhhc
Q 029105          169 LHLVKRRKHLHLSG  182 (199)
Q Consensus       169 ~~~~~~~~~a~~~~  182 (199)
                      ...-+..++|....
T Consensus       438 ~~~E~~Se~AL~~~  451 (872)
T KOG4814|consen  438 FLAEDKSEEALTCL  451 (872)
T ss_pred             HHHhcchHHHHHHH
Confidence            77788888877644

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.25  E-value=0.089  Score=30.13  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=25.3

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHH---HHHHHHHHHcCCHHHHHHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLH---EQKAQVLLELGDAWNALKAAT  115 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~  115 (199)
                      ..|.-++...+.++|+..++++++..++.+..+   ..+..++...|+|.+++.+.-
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555544443222   223344445555555554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.19  Score=42.72  Aligned_cols=142  Identities=8%  Similarity=-0.021  Sum_probs=92.7

Q ss_pred             cchhhhhccchhhhhhccccc------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105           31 HGLSGAELEKNDDNNEHQEPF------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL   86 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   86 (199)
                      .|.+....+-|++|...|.+.                        ..-+.+.+|..+|.+..+.|...+|++.|-++   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            355666666777777776654                        11234678999999999999999999988665   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---c------------------------HHHHHHHHHHHHhcC
Q 029105           87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS---W------------------------AEAWITLGRAQLNFG  139 (199)
Q Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~------------------------~~~~~~lg~~~~~~~  139 (199)
                        +++..+...-....+.|.|++-+.++.-+-+....   +                        ..-....|.-++..|
T Consensus      1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred             --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence              55666777777788889998888887665543211   0                        111123444445555


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      .|+.|.-.|.        +..-|..|+..+..+|+|..|......+
T Consensus      1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            5555554443        2345677788888888888777655433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.11  E-value=0.033  Score=33.37  Aligned_cols=56  Identities=21%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             HHhcccHHHHHHHHHHHHccCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105           67 LAEDGKFREALGKWEAALNLRPE---------NAVLHEQKAQVLLELGDAWNALKAATRATELEQ  122 (199)
Q Consensus        67 ~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  122 (199)
                      ..+.|++..|++.+.+.+.....         ...+..++|.++...|++++|+..+++++.+..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45778999998888877655321         235678899999999999999999999998854

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.09  E-value=0.029  Score=26.99  Aligned_cols=21  Identities=24%  Similarity=0.115  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHH
Q 029105          127 AWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      .++.+|..+...|++++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            344445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.02  E-value=0.06  Score=38.99  Aligned_cols=65  Identities=14%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      ...++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45567778888888899999999999999999999999999999999999999999998887664

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.01  E-value=0.099  Score=29.95  Aligned_cols=52  Identities=19%  Similarity=0.277  Sum_probs=25.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH---HHHHhcCChHHHHHH
Q 029105           96 QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG---RAQLNFGEPDKAIES  147 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~~~~~~A~~~  147 (199)
                      ..|.-++..++.++|+..++++++..++.+.-+..+|   .+|...|+|.+.+.+
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555544444333332   344555555555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=96.01  E-value=0.056  Score=39.20  Aligned_cols=62  Identities=21%  Similarity=0.174  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      |..+|.+|+.+.|+++..+..+|.++...|+.-.|+-+|-+++......+.+..+|...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666665544445556666655555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.2  Score=39.73  Aligned_cols=100  Identities=20%  Similarity=0.017  Sum_probs=74.9

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc---------------------CCCcHH---HHHHHHHHHHHcCCH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL---------------------RPENAV---LHEQKAQVLLELGDA  107 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------------------~~~~~~---~~~~la~~~~~~~~~  107 (199)
                      ..|.+...+..++.+...+|+.+.|....++++-.                     .|.|-.   +.+..-..+.+.|.+
T Consensus       279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~  358 (665)
T KOG2422|consen  279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW  358 (665)
T ss_pred             cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence            67889999999999999999999999888887621                     223322   233344556689999


Q ss_pred             HHHHHHHHHHhhcccc-cHHHHHHHHHHH-HhcCChHHHHHHHHHH
Q 029105          108 WNALKAATRATELEQS-WAEAWITLGRAQ-LNFGEPDKAIESFERA  151 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~~~~~~A~~~~~~a  151 (199)
                      ..|.+++.-.+.++|. +|-+...+-.+| ....+|+--++.++..
T Consensus       359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            9999999999999998 776555544444 4567777777777665

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.90  E-value=0.039  Score=26.51  Aligned_cols=20  Identities=15%  Similarity=-0.056  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q 029105           94 HEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~  113 (199)
                      ++.+|..+...|++++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44455555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.90  E-value=0.013  Score=25.88  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=10.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHH
Q 029105          128 WITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus       128 ~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      .+.+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344455555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.84  E-value=0.36  Score=37.34  Aligned_cols=93  Identities=13%  Similarity=-0.029  Sum_probs=45.6

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      .+...|.++..++++.+|...|.+......+.+     .++.++-.-.+-+++.+.-.......-+..|..+......|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344555556666666666666665554433332     222222222223444444444444444445555555555555


Q ss_pred             HHHhcCChHHHHHHHHHH
Q 029105          134 AQLNFGEPDKAIESFERA  151 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~a  151 (199)
                      ...+.+.+.+|++.+...
T Consensus        88 ~~Y~~k~~~kal~~ls~w  105 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVW  105 (549)
T ss_pred             HHHHhhhHHHHHHHHHHH
Confidence            556666666655555433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.78  E-value=0.032  Score=43.26  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .|..|......+.+....|.|+++...+.-+-..-..-..+...+-......|++++|.....-.+.-.-.+++....-+
T Consensus       319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa  398 (831)
T PRK15180        319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA  398 (831)
T ss_pred             CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence            34444445555666666666666665554433322222233334444455566666666666555544444455444444


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      .....+|-+++|.-.+++.+.++|..
T Consensus       399 ~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        399 GSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             ccHHHHhHHHHHHHHHHHHhccCChh
Confidence            44556677788888888888877653

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.77  E-value=0.024  Score=27.62  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      +..||.+-...++|++|+..|++++.+
T Consensus         4 ~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    4 YDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444444444455555555555444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.75  E-value=0.019  Score=27.94  Aligned_cols=30  Identities=33%  Similarity=0.537  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .++..+|.+-...++|++|+..|++++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.18  Score=33.83  Aligned_cols=108  Identities=11%  Similarity=0.040  Sum_probs=80.3

Q ss_pred             hhcchhhhhccchhhhhhccccc----chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHH-HccCCCcHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF----DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAA-LNLRPENAVLHEQKAQVL  101 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~  101 (199)
                      +..|.+..+.|+-..|+..|..+    ..|..  -.+...-+.++...|.|++-....+.. -..+|-...+.-.||..-
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa  177 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA  177 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence            45678888899999999999887    23332  234555677888899999887766653 234555567888899999


Q ss_pred             HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105          102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      ++.|++..|.+.|..+.. +...|....+.+.+.+.
T Consensus       178 ~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         178 YKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            999999999999998876 55556666666666543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.70  E-value=0.022  Score=25.09  Aligned_cols=23  Identities=26%  Similarity=0.172  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAAT  115 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~  115 (199)
                      +...+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34555556666666666555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.35  Score=36.79  Aligned_cols=100  Identities=16%  Similarity=0.068  Sum_probs=81.8

Q ss_pred             cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcccccHHHHHHHHHHHHhc----CChHHHH
Q 029105           72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGD--AWNALKAATRATELEQSWAEAWITLGRAQLNF----GEPDKAI  145 (199)
Q Consensus        72 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~  145 (199)
                      -+++-+.+...++..+|+...+|+.+..++.+.+.  +..=++.++++++.+|.+..+|...=.+....    ....+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            46677788889999999999999999999987765  57889999999999999988887665554433    2356777


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          146 ESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ++..+++.-++.|-.+|.+...++..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHH
Confidence            88899999999999999888877763

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.58  E-value=0.11  Score=40.35  Aligned_cols=111  Identities=15%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105           68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      ...|+.-.|-.....++...|.+|......+.++.+.|.|+.+.+.+..+-.+-.....+..-+-.-...+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45688888999999999999999999999999999999999999988776655444444555566667888999999988


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105          148 FERALAIKPDSEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       148 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      -+-.+.-.-++++...--+.....+|-++++
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHH
Confidence            8877766555555544444444444444443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.44  E-value=1  Score=37.83  Aligned_cols=118  Identities=20%  Similarity=0.051  Sum_probs=86.9

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--N-------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---  124 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  124 (199)
                      |......+.......++.+|...+.++...-+.  +       ....-..|.+....|+++.|+...+.++..-|.+   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            444556677777888999998888887654332  1       3555667888889999999999999999887753   


Q ss_pred             --HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCcHHH--HHHHHHHHHHHhh
Q 029105          125 --AEAWITLGRAQLNFGEPDKAIESFERALAIK----PDSEEA--RDDRQTALHLVKR  174 (199)
Q Consensus       125 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~--~~~l~~~~~~~~~  174 (199)
                        ..+...+|.+..-.|++++|..+..++.+..    ...-.+  ....+.++...|+
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq  552 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence              3467788999999999999999998888773    223333  3445667777774

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.24  E-value=0.17  Score=43.75  Aligned_cols=126  Identities=19%  Similarity=0.152  Sum_probs=99.7

Q ss_pred             hhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~   90 (199)
                      ..++..+...|++++|+..-.++          ..|+....+..++...+..++...|+..+.++..+        .|.-
T Consensus       977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen  977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred             HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence            34567778889999999887766          67888889999999999999999999998887654        4444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      .....+++.++...++++.|+.+.+.|+..+.        .....+..++..+..++++..|+...+....+
T Consensus      1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            56778899999899999999999999998642        24456677788888888888877776665544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.14  E-value=0.21  Score=42.53  Aligned_cols=127  Identities=16%  Similarity=-0.013  Sum_probs=89.2

Q ss_pred             chhhhhccchhhhhhccccc--chh---hHHHHHHHHhhHHHhc-------ccHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAK---QLALSFEAQGNNLAED-------GKFREALGKWEAALNLRPENAVLHEQKAQ   99 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~~~~~~~~~~la~   99 (199)
                      ..++.....|+.|+..|++.  .-|   +--++.+..|..+..+       ..+.+|+..|++.- -.|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            45677778899999999988  333   2345677777766543       25778888887753 35666777889999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCcH
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF-----GEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~  159 (199)
                      +|..+|+|++-++++.-|++..|.+|..-...-.+-.++     .+-..|....--++...|...
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI  625 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            999999999999999999999998876543333222222     233456666667777777653

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.10  E-value=0.16  Score=36.85  Aligned_cols=53  Identities=26%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105           98 AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      +..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+.+.|++
T Consensus       286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            44455566666666666666666666666666666666666665555555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.76  E-value=0.3  Score=35.02  Aligned_cols=62  Identities=21%  Similarity=0.175  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      ..+...+|.-|+..|+|+.|+..++.+......      ...+...+..|+...|+.+..+...-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            355567888888888888888888888654321      23456677788888888887776655543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.70  E-value=0.88  Score=31.35  Aligned_cols=73  Identities=19%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhhc-ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHhhhhhhhh
Q 029105          107 AWNALKAATRATEL-EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD----SEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       107 ~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      -++|...|-++-.. .=+++...+.+|..|. ..+.++++..+.+++++.+.    +++.+..|+.++...|+++.|--
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            35666666544322 1257888888888776 67888999999999988643    48899999999999999988643

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.64  E-value=0.31  Score=38.53  Aligned_cols=99  Identities=13%  Similarity=0.011  Sum_probs=76.5

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH-
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT-  130 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-  130 (199)
                      .+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...= +.+.|.. 
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY   92 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY   92 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence            6899999999998888777 999999999999999999999999999999999999999999999886432 2555543 


Q ss_pred             HHHHHHhcCChHHHHHHHHHHH
Q 029105          131 LGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      +..+....|+...+....-++.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy  114 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAY  114 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHH
Confidence            3444555565555444433333

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.63  E-value=0.59  Score=38.67  Aligned_cols=51  Identities=18%  Similarity=0.093  Sum_probs=27.6

Q ss_pred             chhhhhccchhhhhhccccc------------chhhHH-HHHHHHhhHHHhcccHHHHHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF------------DAKQLA-LSFEAQGNNLAEDGKFREALGKWEA   82 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~   82 (199)
                      |..+.+..++++|++.|.+.            ..|... ..--.-|.-+...|+++.|+..|-.
T Consensus       668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie  731 (1636)
T KOG3616|consen  668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE  731 (1636)
T ss_pred             hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence            55666666777777777665            112111 1111234555666777777666544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.50  E-value=0.97  Score=41.96  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=90.8

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-cc--------
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QS--------  123 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~--------  123 (199)
                      ....++.|...|.+.+..|.++.|-...-.+.+..  -+.++...|..+...|+-..|+..+++.+..+ |+        
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence            44568899999999999999999999888887776  57888999999999999999999999999653 22        


Q ss_pred             --------cHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          124 --------WAEAWITLGRAQLNFGEP--DKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       124 --------~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                              ...+....+......|++  ..-+..|..+.++.|.....++.+|.-|.
T Consensus      1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence                    112345555666666665  45678899999999987777777774433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.49  E-value=0.99  Score=35.88  Aligned_cols=73  Identities=12%  Similarity=0.044  Sum_probs=57.4

Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           81 EAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        81 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ++-++.+|.+...|..|-.-+..+ .+++....|++.+...|..+.+|...........+|+.-...|.+++..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            556777888888888777766544 7888888888888888888888888888888888888888888877754

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.45  E-value=0.11  Score=39.84  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhh-------c-ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATE-------L-EQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~-------~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      ....+.+++...|+|..|++.++..--       . -+-+...++.+|.+|+.+++|.+|+..|..++.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888999999888754321       1 123455688889999999999999988887763

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.23  E-value=0.4  Score=31.08  Aligned_cols=51  Identities=25%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      .....+...+..|++..|......++..+|++..+....+.++..+|...+
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            344455555566666666666666666666666666666666666655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.23  E-value=0.77  Score=37.74  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------hhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRA----------------------TELEQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~a----------------------l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      .++.++|..+..+..|++|.++|.+.                      ...-|++.+.+-.+|..+...|.-++|.++|.
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            56666666666666666666665432                      22246677777788888888888888888775


Q ss_pred             H
Q 029105          150 R  150 (199)
Q Consensus       150 ~  150 (199)
                      +
T Consensus       877 r  877 (1189)
T KOG2041|consen  877 R  877 (1189)
T ss_pred             h
Confidence            4

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.08  E-value=1.3  Score=34.80  Aligned_cols=75  Identities=11%  Similarity=-0.123  Sum_probs=50.5

Q ss_pred             cchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      ...-+.+.|-.+.|+....      ++...+.+   ..+.|+.+.|.+..     ...+++..|..||.....+|+++-|
T Consensus       301 i~~fL~~~G~~e~AL~~~~------D~~~rFeL---Al~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lA  366 (443)
T PF04053_consen  301 IARFLEKKGYPELALQFVT------DPDHRFEL---ALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELA  366 (443)
T ss_dssp             HHHHHHHTT-HHHHHHHSS-------HHHHHHH---HHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHH
T ss_pred             HHHHHHHCCCHHHHHhhcC------ChHHHhHH---HHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHH
Confidence            3455566777788877753      34444444   45778888887543     2334678899999999999999999


Q ss_pred             HHHHHHHhh
Q 029105          111 LKAATRATE  119 (199)
Q Consensus       111 ~~~~~~al~  119 (199)
                      ..+|+++-.
T Consensus       367 e~c~~k~~d  375 (443)
T PF04053_consen  367 EECYQKAKD  375 (443)
T ss_dssp             HHHHHHCT-
T ss_pred             HHHHHhhcC
Confidence            999988743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.06  E-value=2.1  Score=33.64  Aligned_cols=76  Identities=26%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105           61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE  140 (199)
Q Consensus        61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  140 (199)
                      ..++.-+...|-.+.|+...        .++...+.|+   .+.|+.+.|.+..++     .+++..|..||.....+|+
T Consensus       299 ~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~  362 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN  362 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC
Confidence            34445555566666555321        2344445544   467777777665432     2467799999999999999


Q ss_pred             hHHHHHHHHHHH
Q 029105          141 PDKAIESFERAL  152 (199)
Q Consensus       141 ~~~A~~~~~~al  152 (199)
                      ++-|..+|+++-
T Consensus       363 ~~lAe~c~~k~~  374 (443)
T PF04053_consen  363 IELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhc
Confidence            999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.99  E-value=0.8  Score=32.08  Aligned_cols=63  Identities=22%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             hhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105           64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE  126 (199)
Q Consensus        64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  126 (199)
                      ...+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|++..
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            445678889999999999999999999998888889999999999999999999999997543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.98  E-value=3.4  Score=34.96  Aligned_cols=112  Identities=15%  Similarity=0.036  Sum_probs=82.4

Q ss_pred             cchhhhhccchhhhhhccccc----ch-------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-----HHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF----DA-------KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-----AVLH   94 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~   94 (199)
                      .+.......++.+|.....++    ..       ...+......|.+....|+++.|.+..+.++..-|.+     ..+.
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~  500 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL  500 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence            355666677888877766555    11       1234455567888899999999999999999887766     3677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccc----ccHH--HHHHHHHHHHhcCChH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQ----SWAE--AWITLGRAQLNFGEPD  142 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~--~~~~lg~~~~~~~~~~  142 (199)
                      ..+|.+..-.|++++|..+...+.++..    ....  +....+.++..+|+..
T Consensus       501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~  554 (894)
T COG2909         501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA  554 (894)
T ss_pred             hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence            8899999999999999999998887733    2222  3445677888889443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.78  E-value=0.19  Score=25.33  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=18.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      +.+|.+|..+|+.+.|...+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.74  E-value=0.54  Score=38.69  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=82.0

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLE--LGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      ...-|+.+++.+++.++.--|..++.+-|.+    .....+.+.|+..  .|+|..++..+.-++...|....++...+.
T Consensus        56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~  135 (748)
T KOG4151|consen   56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR  135 (748)
T ss_pred             HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence            3445677788888888877777777777733    3455666666654  577888888888888888888888888888


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +|...+.++-|++...-....+|.+..+..-...++...
T Consensus       136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  136 KYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            888888888888887777778888865544444444333

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.72  E-value=0.52  Score=34.39  Aligned_cols=61  Identities=26%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRAT  118 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  118 (199)
                      ..+...+..+...|.+.+|++..++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445567788899999999999999999999999999999999999999888877776654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.70  E-value=0.25  Score=22.37  Aligned_cols=30  Identities=30%  Similarity=0.279  Sum_probs=26.0

Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      |+.+.+...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567889999999999999999999887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.66  E-value=2.3  Score=31.92  Aligned_cols=116  Identities=12%  Similarity=-0.006  Sum_probs=77.0

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----------------
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ-----------------  122 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------  122 (199)
                      -+.+-....+..+..+-++....+++++|..+.++..++.-  +..-..+|...++++++.-.                 
T Consensus       187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d  264 (556)
T KOG3807|consen  187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE  264 (556)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence            34444555666777777888889999999999988888753  33445666666666665311                 


Q ss_pred             ------ccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHhhhhh
Q 029105          123 ------SWAE--AWITLGRAQLNFGEPDKAIESFERALAIKPDSE--EARDDRQTALHLVKRRKH  177 (199)
Q Consensus       123 ------~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~  177 (199)
                            .+..  ....++.|..++|+..+|++.++...+..|-..  ..+-+|..++..+.-|.+
T Consensus       265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD  329 (556)
T KOG3807|consen  265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD  329 (556)
T ss_pred             hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1111  234688999999999999999999888777432  234455555555544443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.63  E-value=2.4  Score=32.51  Aligned_cols=112  Identities=17%  Similarity=0.113  Sum_probs=82.8

Q ss_pred             hhHHHhcccHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105           64 GNNLAEDGKFR-EALGKWEAALNLRPENAVLHEQKAQVLLE------------LGDAWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        64 ~~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      -......|.++ ++++.=.+.+..+|+...+|+..-.++..            +.-.++-+.+...++..+|+...+|+.
T Consensus        35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            33344455554 56677777888899888777655443332            224566778889999999999999999


Q ss_pred             HHHHHHhcCC--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          131 LGRAQLNFGE--PDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       131 lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      +..++.+.+.  +..-++..+++++.+|.+..+|...-.+.......
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            9999987765  57888999999999999988887776666554443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=3.1  Score=33.48  Aligned_cols=102  Identities=15%  Similarity=0.017  Sum_probs=70.4

Q ss_pred             ccHHHHHHHHHHHHcc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------------------
Q 029105           71 GKFREALGKWEAALNL------------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL------------------  120 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------  120 (199)
                      ..|++|...|.-++..            .|.+...+..++.+...+|+.+-|....++++-.                  
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            4466666666655443            5667788999999999999988777766666532                  


Q ss_pred             ---ccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH
Q 029105          121 ---EQSWAEA---WITLGRAQLNFGEPDKAIESFERALAIKPD-SEEARDDRQTALHLV  172 (199)
Q Consensus       121 ---~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~  172 (199)
                         .|.|-..   .+..-.-+.+.|.+..|.++++-.+.++|. +|-+...+..+|...
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr  390 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR  390 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence               1222222   223333455789999999999999999998 877766666665543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.23  E-value=2.2  Score=30.56  Aligned_cols=77  Identities=13%  Similarity=0.027  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHhhh
Q 029105          108 WNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDDRQTALHLVKRR  175 (199)
Q Consensus       108 ~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~  175 (199)
                      ...++.+.+|+....      --...-..+|.-|+..|++++|+..|+.+......      ...+...+..|+..+|+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~  234 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence            344555555554422      12335568899999999999999999999655332      245678888899999988


Q ss_pred             hhhhhhccc
Q 029105          176 KHLHLSGLS  184 (199)
Q Consensus       176 ~~a~~~~~~  184 (199)
                      +......++
T Consensus       235 ~~~l~~~le  243 (247)
T PF11817_consen  235 EDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHH
Confidence            886665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.20  E-value=1.9  Score=29.73  Aligned_cols=72  Identities=21%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHhcCChHHHH
Q 029105           73 FREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELEQS----WAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        73 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      -++|...|-++-... -+++...+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++..+|+++.|-
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            355666665543321 145788888887776 78999999999999998543    6889999999999999999884

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.04  E-value=4.4  Score=33.36  Aligned_cols=106  Identities=17%  Similarity=0.031  Sum_probs=76.5

Q ss_pred             hHHHHHHHHhhHHH-hcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----
Q 029105           55 QLALSFEAQGNNLA-EDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS----  123 (199)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  123 (199)
                      ..+.+.+.+|.+++ ...+++.|..++++++.+...+      ..+...++.++.+.+... |+..+++.++...+    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            46788899999998 7899999999999998776432      234566788888877777 99999999987544    


Q ss_pred             cHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcC--CCcHHH
Q 029105          124 WAEAWITL--GRAQLNFGEPDKAIESFERALAIK--PDSEEA  161 (199)
Q Consensus       124 ~~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~  161 (199)
                      .+...+.+  .......+++..|++.++......  +.++.+
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            22222222  223333479999999999888775  355543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.08  Score=39.30  Aligned_cols=109  Identities=10%  Similarity=-0.084  Sum_probs=83.1

Q ss_pred             hcchhhhhccchhhhhhccccc-------------chhh--------HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF-------------DAKQ--------LALSFEAQGNNLAEDGKFREALGKWEAALNLRP   88 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~-------------~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~   88 (199)
                      +.|...++.++++.|...+.+.             ..++        -......++.+-+..+.+..|+..-..+++.++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            4577788888888887766555             0111        112344567777888888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ....+++..+..+....++++|++.+..+....|++......+..+-...
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            88899999999999999999999999999999999887665555444433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.59  E-value=0.34  Score=24.46  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           95 EQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      +.+|..|..+|+.+.|...++.++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12854 PPR_1: PPR repeat

Probab=92.51  E-value=0.56  Score=22.02  Aligned_cols=26  Identities=12%  Similarity=-0.014  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATR  116 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~  116 (199)
                      ...|..+-..+.+.|+.++|.+.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34455555555555555555555543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.41  E-value=0.88  Score=31.89  Aligned_cols=58  Identities=16%  Similarity=0.040  Sum_probs=44.3

Q ss_pred             hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      .+.+.+...+++...+..  ..|.+......+-.++.-.|+|++|...++-+-.+.|.+.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345566777777766554  6677777777788888889999999999988888888763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.40  E-value=1.4  Score=36.27  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHc----------------------cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALN----------------------LRPENAVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------------------~~~~~~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      ..-.++..+|..+.....|++|.++|...-.                      .-|++..++-.+|..+...|.-++|.+
T Consensus       794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~  873 (1189)
T KOG2041|consen  794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE  873 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence            3456788899999999999999988876421                      134444445555555555555555555


Q ss_pred             HH
Q 029105          113 AA  114 (199)
Q Consensus       113 ~~  114 (199)
                      .+
T Consensus       874 a~  875 (1189)
T KOG2041|consen  874 AY  875 (1189)
T ss_pred             HH
Confidence            54

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.33  E-value=1.9  Score=33.32  Aligned_cols=61  Identities=15%  Similarity=-0.002  Sum_probs=47.9

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHcc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNL---------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      ++..+.+++...|+|..|++.++.. ++         .+-+...++..|-+|+.+++|..|+..|..++..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888999999999987653 22         2233577899999999999999999999888753

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=92.33  E-value=1.8  Score=32.39  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        72 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      +|..-...|.......|+ +.+-.|.+....+..-...++...+.....  -..+...+...|..+.++|+.++|...|+
T Consensus       311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd  389 (415)
T COG4941         311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD  389 (415)
T ss_pred             ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence            444444555555555554 444556666666666677777777666554  23455577788999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHH
Q 029105          150 RALAIKPDSEEARDDR  165 (199)
Q Consensus       150 ~al~~~p~~~~~~~~l  165 (199)
                      +++.+.++..+..+..
T Consensus       390 rAi~La~~~aer~~l~  405 (415)
T COG4941         390 RAIALARNAAERAFLR  405 (415)
T ss_pred             HHHHhcCChHHHHHHH
Confidence            9999998877654433

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=4.3  Score=31.32  Aligned_cols=69  Identities=13%  Similarity=-0.083  Sum_probs=37.7

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL--RP--ENAVLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      ..+...+.+-+.|...+.|++|.....+..--  ..  ..+...+.+|.+..-+++|..|.+++-++++..|.
T Consensus       207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            34445555556666666666666555554311  11  12344555666666666666666666666666664

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.14  E-value=0.8  Score=29.73  Aligned_cols=51  Identities=22%  Similarity=0.029  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP  141 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  141 (199)
                      .......+.-.+..|++.-|.+....++..+|++..+...++.++..+|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            344566677777788888888888888888888888888888877766543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.94  E-value=4  Score=33.56  Aligned_cols=116  Identities=16%  Similarity=0.045  Sum_probs=75.4

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccC-------C---Cc----------------HHHHHHHHHHHHHcCCHHHHHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLR-------P---EN----------------AVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------~---~~----------------~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      ++..-|......+..+.|.+++.++++.-       +   ..                ..+....+.+.+-.+++..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            33444556666666667777777665431       1   11                1344566777788999999998


Q ss_pred             HHHHHhhcc---c------ccHHHHHHHHHHHHhcCChHHHHHHHH--------HHHhcCCCcH---HHHHHHHHHHHHH
Q 029105          113 AATRATELE---Q------SWAEAWITLGRAQLNFGEPDKAIESFE--------RALAIKPDSE---EARDDRQTALHLV  172 (199)
Q Consensus       113 ~~~~al~~~---p------~~~~~~~~lg~~~~~~~~~~~A~~~~~--------~al~~~p~~~---~~~~~l~~~~~~~  172 (199)
                      ....+....   |      -.+..++..|..+...|+.+.|+..|.        .+....+.+.   -+..++..++...
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~  462 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE  462 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence            888777553   2      246789999999999999999999998        3334444332   2345555565544


Q ss_pred             hh
Q 029105          173 KR  174 (199)
Q Consensus       173 ~~  174 (199)
                      +.
T Consensus       463 ~~  464 (608)
T PF10345_consen  463 SS  464 (608)
T ss_pred             cc
Confidence            43

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.75  E-value=0.74  Score=37.48  Aligned_cols=109  Identities=11%  Similarity=-0.036  Sum_probs=58.3

Q ss_pred             chhhhhccchhhhhhccccc------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ   99 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~   99 (199)
                      +..+...|+.++|+......            .+...-+.+...+..+.....+.-|.+.|.+.=.        ...+-.
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq  781 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ  781 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence            35566667777776654322            1112223333334444444444444444444211        123344


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      .+...++|++|....++.-+.-|+   +++-.|..+.+..++++|.+.|-++
T Consensus       782 lHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             heeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh
Confidence            556778888887777665554443   5566666666666666666666554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.71  E-value=0.7  Score=33.51  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=98.4

Q ss_pred             ccchhhhhhccccc--chhh----HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-------CC----------------
Q 029105           38 LEKNDDNNEHQEPF--DAKQ----LALSFEAQGNNLAEDGKFREALGKWEAALNL-------RP----------------   88 (199)
Q Consensus        38 ~~~~~~A~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~~----------------   88 (199)
                      ..+.++|+..|.++  ..+.    -..++..+..+.++++++++-.+.|.+.+..       +-                
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            34677888888877  2222    2356778888899999998888888776532       10                


Q ss_pred             -------------------CcHHHH----HHHHHHHHHcCCHHHHHHHHHHHhhcccc------------cHHHHHHHHH
Q 029105           89 -------------------ENAVLH----EQKAQVLLELGDAWNALKAATRATELEQS------------WAEAWITLGR  133 (199)
Q Consensus        89 -------------------~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~  133 (199)
                                         .+...|    .-+|.+++..++|..-..++.+.-.....            -.+.+..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence                               000111    23577777777777666666554433211            1123334445


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCC--cHHHHHH----HHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105          134 AQLNFGEPDKAIESFERALAIKPD--SEEARDD----RQTALHLVKRRKHLHLSGLSNDANRFVVGDKT  196 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  196 (199)
                      .|..+.+...-...|++++.+...  +|.....    =|..+.+-|++++|...++.++...-..|.+.
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR  268 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR  268 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence            667777777777788888877543  2333222    23456778899999999998887766666543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.44  E-value=2.6  Score=32.42  Aligned_cols=96  Identities=18%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----c----ccH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELE----Q----SWA  125 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~~  125 (199)
                      -.++..+|.-|...|+++.|+++|.++-......   ...+.++-.+-..+|+|..-..+..++...-    .    -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4577889999999999999999999865554332   3566777777788899888887777776541    0    123


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105          126 EAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus       126 ~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      .....-|.+...+++|..|..+|-.+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            355666777788889999988886554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.14  E-value=9.7  Score=33.33  Aligned_cols=160  Identities=12%  Similarity=0.087  Sum_probs=95.8

Q ss_pred             hcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC---------------------
Q 029105           30 EHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP---------------------   88 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---------------------   88 (199)
                      ..|.-.+..+.|+.|.-.|.      +..-+..++..+...|+|..|+...+++-....                     
T Consensus      1199 ~vGdrcf~~~~y~aAkl~y~------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG 1272 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYS------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICG 1272 (1666)
T ss_pred             HHhHHHhhhhhhHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC
Confidence            34666666666666655553      344456677777788888888877776633210                     


Q ss_pred             C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C-C------
Q 029105           89 E----NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI-K-P------  156 (199)
Q Consensus        89 ~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p------  156 (199)
                      -    +++-+-.+-..|...|-+++-+..++.++-+...+-..+..+|..|.+- ++++-++.++--... + |      
T Consensus      1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~ 1351 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAA 1351 (1666)
T ss_pred             ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHH
Confidence            0    1122334556667778888888888888877777777777777776543 333333332211110 0 1      


Q ss_pred             CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105          157 DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT  196 (199)
Q Consensus       157 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  196 (199)
                      +....|..+.-.|..-..|+.|....+..-...|..|.+.
T Consensus      1352 eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FK 1391 (1666)
T KOG0985|consen 1352 EQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFK 1391 (1666)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHH
Confidence            2245677777788887888887776666655556655543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.63  E-value=3.1  Score=34.77  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=39.3

Q ss_pred             chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (199)
                      |.-+...|.++.|+.+|..+.      .+..-........+|.+|+..++..-.... ....|-.++.-|...|+|+.|.
T Consensus       713 g~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae  785 (1636)
T KOG3616|consen  713 GDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAE  785 (1636)
T ss_pred             hHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHH
Confidence            555666677777777665541      111111222334555666555554332221 1233445555556666666666


Q ss_pred             HHHHHH
Q 029105          112 KAATRA  117 (199)
Q Consensus       112 ~~~~~a  117 (199)
                      +.|.++
T Consensus       786 ~lf~e~  791 (1636)
T KOG3616|consen  786 ELFTEA  791 (1636)
T ss_pred             HHHHhc
Confidence            655444

>PF12854 PPR_1: PPR repeat

Probab=90.41  E-value=0.95  Score=21.20  Aligned_cols=28  Identities=25%  Similarity=0.214  Sum_probs=23.6

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105          124 WAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      +...|..+-..+.+.|+.++|++.|++.
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3567888899999999999999998763

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.34  E-value=6.1  Score=30.42  Aligned_cols=62  Identities=13%  Similarity=-0.038  Sum_probs=45.5

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH--HHHHHHH--HHHHHcCCHHHHHHHHHHHhhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENA--VLHEQKA--QVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la--~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .....+..++..++|..|...+......-|...  ..+..++  -.+...-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445677788999999999999999887533333  3444444  4445688899999999988765

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=90.23  E-value=3.3  Score=26.30  Aligned_cols=43  Identities=14%  Similarity=0.073  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHc--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           75 EALGKWEAALN--LRPENAVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        75 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      .+.+.|..+..  +.-..+..|...|..+...|++.+|.++|+.+
T Consensus        81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G  125 (126)
T PF08311_consen   81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG  125 (126)
T ss_dssp             HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            44444444332  33444555555566666666666666655554

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.09  E-value=3.4  Score=31.04  Aligned_cols=89  Identities=16%  Similarity=0.065  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--------------C-
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP--------------D-  157 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------------~-  157 (199)
                      .-+.+.....+..+..+-++....+++++|....++..++.-  +.--..+|...++++++...              . 
T Consensus       186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~  263 (556)
T KOG3807|consen  186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH  263 (556)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence            334555666777888888999999999999999999888752  23345567777777665421              0 


Q ss_pred             --------c--HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          158 --------S--EEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       158 --------~--~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                              +  .-+...|+.|..++|+..+|.+...
T Consensus       264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~R  299 (556)
T KOG3807|consen  264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMR  299 (556)
T ss_pred             hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                    1  1245789999999999999887554

>PF13041 PPR_2: PPR repeat family

Probab=89.70  E-value=1.7  Score=22.21  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      .|..+-..+.+.|++++|.+.|++..+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            344444444555555555555554443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.55  E-value=9.9  Score=30.79  Aligned_cols=114  Identities=13%  Similarity=-0.017  Sum_probs=56.6

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHhhcc--cc-cHHHHHHHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK---AATRATELE--QS-WAEAWITLG  132 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~--p~-~~~~~~~lg  132 (199)
                      +...-+..--..|++..|...+++..+..|+...+-........+.|+.+.+..   .+.....-.  +. ....+...+
T Consensus       368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~  447 (577)
T KOG1258|consen  368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFA  447 (577)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHH
Confidence            333444444445555555555555555555555555555555555555555542   111111110  00 111222233


Q ss_pred             H-HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          133 R-AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       133 ~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      . .+.-.++.+.|...+.+++...|.+...+..+..+....
T Consensus       448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~  488 (577)
T KOG1258|consen  448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ  488 (577)
T ss_pred             HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence            2 233456677777777777777777776666655554433

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=89.05  E-value=4.4  Score=30.94  Aligned_cols=48  Identities=23%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      .+..-+|+..++.++..+|.+..+...+..+|...|-.+.|...|...
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            345567888999999999999999999999999999999999988553

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.96  E-value=5.2  Score=32.56  Aligned_cols=49  Identities=37%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      ..+.|+++.|.+...++     ++..-|-.||.+....+++..|.++|.++...
T Consensus       647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~  695 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL  695 (794)
T ss_pred             hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence            35677777776655443     45566788888888888888888888877655

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=88.79  E-value=7.6  Score=28.45  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      +.|...+.+++.++|....+...+-.+-...|..
T Consensus       116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP  149 (277)
T PF13226_consen  116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEP  149 (277)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence            4555666666666666655555555544444443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=88.66  E-value=2.6  Score=28.90  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      .+..++..++.++..|+ +..+..++.++..+|+.++|.....++..+.|.
T Consensus       127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            34445666777777774 778888999999999999999999999999993

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=88.46  E-value=8.5  Score=28.88  Aligned_cols=101  Identities=10%  Similarity=0.091  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH--
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA--  125 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--  125 (199)
                      ....+++..+|.-|.+.|+-+.|.+.+.+..+..-      +-.-....+|..|....-..+.++.....++...++-  
T Consensus       101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr  180 (393)
T KOG0687|consen  101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR  180 (393)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence            34566777788888888888888877766544321      1123445566666655555555555555555433321  


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          126 -EAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       126 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                       .....-|...+...++.+|-..|..++..
T Consensus       181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  181 NRLKVYQGLYCMSVRNFKEAADLFLDSVST  210 (393)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence             12334455566667777777777766654

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=88.24  E-value=2.3  Score=30.07  Aligned_cols=104  Identities=17%  Similarity=0.090  Sum_probs=60.0

Q ss_pred             HhcccHHHHHHHHHHHHccCCCcH------------HHHHHHHHHHHHcCCHH-HH-HHHHHHHhhc--cccc--HHHHH
Q 029105           68 AEDGKFREALGKWEAALNLRPENA------------VLHEQKAQVLLELGDAW-NA-LKAATRATEL--EQSW--AEAWI  129 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~-~A-~~~~~~al~~--~p~~--~~~~~  129 (199)
                      +..|+|+.|++...-+|+.+-.-|            +-....+......|..- .. ...+..+..-  -|+.  ...+-
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K  173 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK  173 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            567999999999999998743222            22233444455556521 11 1222222211  1333  33455


Q ss_pred             HHHHHHH---------hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          130 TLGRAQL---------NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       130 ~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ..|..+.         ..++...|+.++++++.++|... +...+..+...+
T Consensus       174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~l  224 (230)
T PHA02537        174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRL  224 (230)
T ss_pred             HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHH
Confidence            6676663         45677899999999999998743 233344444333

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.19  E-value=6.5  Score=26.96  Aligned_cols=127  Identities=17%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             ccchhhhhhccccc-chhhHHHHHHHHhhHHHh-----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-----cCC
Q 029105           38 LEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAE-----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-----LGD  106 (199)
Q Consensus        38 ~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~  106 (199)
                      ..++++|...|... .....+...+.+|.-++.     .++...|++.+..+-.  .+.+.+..++|.++..     .++
T Consensus        48 ~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d  125 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD  125 (248)
T ss_pred             HHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence            45677777777766 445566777777766653     4678889999988766  4567777888877763     223


Q ss_pred             --HHHHHHHHHHHhhcccccHHHHHHHHHHHHhc------------------------CChHHHHHHHHHHHhcCCCcHH
Q 029105          107 --AWNALKAATRATELEQSWAEAWITLGRAQLNF------------------------GEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       107 --~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------~~~~~A~~~~~~al~~~p~~~~  160 (199)
                        ...|..++.++..+.  +..+-++|...|+.-                        .+.+.|.+.--++.+++  ++.
T Consensus       126 pd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~  201 (248)
T KOG4014|consen  126 PDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQ  201 (248)
T ss_pred             CCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChH
Confidence              678889998887764  444555666555543                        34455555555555543  344


Q ss_pred             HHHHHHHHHH
Q 029105          161 ARDDRQTALH  170 (199)
Q Consensus       161 ~~~~l~~~~~  170 (199)
                      +-.++++.|.
T Consensus       202 aCAN~SrMyk  211 (248)
T KOG4014|consen  202 ACANVSRMYK  211 (248)
T ss_pred             HHhhHHHHHH
Confidence            5555555553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=87.65  E-value=1.3  Score=19.56  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=10.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHH
Q 029105          130 TLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      .+-.+|.+.|++++|.+.|++.
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    5 SLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             HHHHHHHccchHHHHHHHHHHH
Confidence            3444444555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=87.15  E-value=6.1  Score=25.53  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      .+..+|+-++--+.+.........+|..+..+|.+|.+.|+..+|-+.+.+|.+.
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3445666666666666666544556788888888888888888888888877654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.99  E-value=3.9  Score=27.99  Aligned_cols=49  Identities=27%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105           73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ  122 (199)
Q Consensus        73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  122 (199)
                      .+..++..++.+...|+ +..+..++.++...|+.++|.....++..+.|
T Consensus       127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            44555667777777785 78889999999999999999999999999999

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.75  E-value=17  Score=30.28  Aligned_cols=121  Identities=12%  Similarity=0.038  Sum_probs=67.5

Q ss_pred             chhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           32 GLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      |.......+.+.|...+...      .......+...+|.-....+...+|...+..+..... +....-.........+
T Consensus       248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~  326 (644)
T PRK11619        248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG  326 (644)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence            44444455556666665543      2222333444444444444324566666665443322 2233333334444677


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      +++.....+...-..........|-+|.++...|+.++|...|+++..
T Consensus       327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            887776666664433334556677778887778888888888887644

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.74  E-value=3.4  Score=34.37  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             hhcchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHh--cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAE--DGKFREALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      ..-|+.+++.+++.++...|...      .++.........+.+++.  .++|..++.-..-++...|....++...+.+
T Consensus        57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~  136 (748)
T KOG4151|consen   57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK  136 (748)
T ss_pred             HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence            34588889999999886655544      445566666777777765  5789999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcccccHHHHH
Q 029105          101 LLELGDAWNALKAATRATELEQSWAEAWI  129 (199)
Q Consensus       101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~  129 (199)
                      |...++++-|++...-....+|.++.+.-
T Consensus       137 y~al~k~d~a~rdl~i~~~~~p~~~~~~e  165 (748)
T KOG4151|consen  137 YEALNKLDLAVRDLRIVEKMDPSNVSASE  165 (748)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence            99999999999998888888998855433

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.29  E-value=11  Score=30.26  Aligned_cols=95  Identities=13%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105           75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      ...+.+.......|+++......+..+...|+.+.|+..++..+...-.  ..-.++.+|.++..+.++..|-..+....
T Consensus       251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~  330 (546)
T KOG3783|consen  251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR  330 (546)
T ss_pred             HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444455556678998988889999999999988888888888872111  23346778888889999999999998887


Q ss_pred             hcCCCcHHHHHHHH-HHH
Q 029105          153 AIKPDSEEARDDRQ-TAL  169 (199)
Q Consensus       153 ~~~p~~~~~~~~l~-~~~  169 (199)
                      ....=....+..++ .|+
T Consensus       331 desdWS~a~Y~Yfa~cc~  348 (546)
T KOG3783|consen  331 DESDWSHAFYTYFAGCCL  348 (546)
T ss_pred             hhhhhhHHHHHHHHHHHH
Confidence            77654444454444 444

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.13  E-value=4.6  Score=23.06  Aligned_cols=24  Identities=13%  Similarity=0.379  Sum_probs=10.6

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHH
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAA   83 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~   83 (199)
                      +...|.-+-..|++.+|+.+|+.+
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~a   32 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKA   32 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            333444444444444444444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.00  E-value=3.9  Score=31.47  Aligned_cols=63  Identities=13%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             CchHhhhcchhhhhccchhhhhhcccccch--hhHH--HHHH--HHhhHHHhcccHHHHHHHHHHHHcc
Q 029105           24 FDQQDQEHGLSGAELEKNDDNNEHQEPFDA--KQLA--LSFE--AQGNNLAEDGKFREALGKWEAALNL   86 (199)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~--~~~~~~~~~~~~~~A~~~~~~~l~~   86 (199)
                      ++......+..++..++|..|...+.....  |...  ..+.  ..|..+...-++.+|.+.++..+..
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            334445667788899999999998887711  2222  2333  3455567788999999999987765

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=11  Score=27.97  Aligned_cols=101  Identities=7%  Similarity=-0.061  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH--
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA--  125 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--  125 (199)
                      ....+++.++|.-|.+.++.+.+.++..+.++-.-.      -.-+...+|.+|..+.-.++.++.....++...+..  
T Consensus       112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr  191 (412)
T COG5187         112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR  191 (412)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence            345678888888888888888888777666543211      123345566666666666777777766666543321  


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          126 -EAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       126 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                       ......|...+...++.+|-..+...+..
T Consensus       192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t  221 (412)
T COG5187         192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT  221 (412)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence             12234455566667777777777666543

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=85.86  E-value=18  Score=29.61  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=42.3

Q ss_pred             ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      ...+.+....+.-+.............+..+-..+..++|-.+|++.+..+|+  ..++..+.-+.+.|-...|...++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   98 (578)
T PRK15490         22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK   98 (578)
T ss_pred             hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence            33444444444444333344444455555555666666666666666666665  345555666666666665555554

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=84.60  E-value=9.7  Score=27.92  Aligned_cols=68  Identities=24%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-----C-----------------HHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           75 EALGKWEAALNLRPENAVLHEQKAQVLLELG-----D-----------------AWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-----~-----------------~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .-...++.-++..|++..++..+|..+....     .                 .+.|...+.+++.++|....+...+-
T Consensus        61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~  140 (277)
T PF13226_consen   61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI  140 (277)
T ss_pred             hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3566777888899999988888888776431     1                 66788889999999999998888887


Q ss_pred             HHHHhcCChH
Q 029105          133 RAQLNFGEPD  142 (199)
Q Consensus       133 ~~~~~~~~~~  142 (199)
                      .+-...|...
T Consensus       141 ~~s~~fgeP~  150 (277)
T PF13226_consen  141 NISAYFGEPD  150 (277)
T ss_pred             HHHhhcCCch
Confidence            7777777664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.95  E-value=12  Score=31.84  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=40.5

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL   86 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   86 (199)
                      .++.+..-|+-|+......  ........+...|.-++..|++++|...|-+.+..
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            4556666677777766555  33345677888999999999999999999888765

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=83.78  E-value=16  Score=34.81  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=50.8

Q ss_pred             cchhhhhccchhhhhhccccc---chh-h-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           31 HGLSGAELEKNDDNNEHQEPF---DAK-Q-LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ++.+-++.+.|..|+-+++.-   ..+ . ....+..+-.+|...++++.-.-.... ...+|+    ....-......|
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEASG 1463 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHhhc
Confidence            455666677777777766652   111 1 112222223345555554443333322 011111    112222233445


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      ++..|..+|++++..+|+....+...-......|.++..+-..+-
T Consensus      1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred             cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence            555555555555555555444444444444444555544444433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=83.35  E-value=3.1  Score=18.76  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=15.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          128 WITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       128 ~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      |..+-..|.+.|++++|.+.|.+..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34444556666666666666665543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.01  E-value=9.6  Score=24.19  Aligned_cols=66  Identities=15%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----Hhhc
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATR----ATEL  120 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~----al~~  120 (199)
                      +..+|...++.+++-.++-.|++|+.+..+-               .....++|..+..+|+.+-.+++++-    ++.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            4456777788888888888888877552211               23456788888888888888888754    4445


Q ss_pred             ccccH
Q 029105          121 EQSWA  125 (199)
Q Consensus       121 ~p~~~  125 (199)
                      -|..+
T Consensus        84 iPQCp   88 (140)
T PF10952_consen   84 IPQCP   88 (140)
T ss_pred             ccCCC
Confidence            55543

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=82.87  E-value=8.7  Score=23.60  Aligned_cols=44  Identities=23%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105           96 QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      ..|...+..|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus        64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g  107 (108)
T PF07219_consen   64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG  107 (108)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence            34444445555555555555554443333333333334333333

These are membrane protein involved in a late step of protoheme IX synthesis [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=82.74  E-value=22  Score=28.20  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=81.7

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ++|.+...|+.+..-+..+|.+++-.+.|++...-.|--+.+|...-..-...+++..-...|.+++...-+ .+.|...
T Consensus        37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY  115 (660)
T COG5107          37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY  115 (660)
T ss_pred             cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence            689999999999999999999999999999999999988888877666666678888888888887765332 4455433


Q ss_pred             HHHHHhcC-----C----hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          132 GRAQLNFG-----E----PDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       132 g~~~~~~~-----~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      -..-.+.+     +    .-+|-+..-.+.-.+|.....|...+..+.
T Consensus       116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle  163 (660)
T COG5107         116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE  163 (660)
T ss_pred             HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence            22212211     1    223444444444456777666666655443

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=81.90  E-value=4.6  Score=30.85  Aligned_cols=46  Identities=17%  Similarity=0.080  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      ...-+|+..++.++..+|.+......+..+|..+|-...|...|..
T Consensus       197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~  242 (365)
T PF09797_consen  197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES  242 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3456788899999999999999999999999999999999988863

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=81.84  E-value=11  Score=29.68  Aligned_cols=77  Identities=14%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             HHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105           79 KWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .++.-++-+|++...|+.|-.-+..++.+++-.+.+++...-.|-.+.+|...-.--...+++..-...|.+++...
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~  106 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence            45566788999999999999999999999999999999999999888888766555556678887778888877653

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=81.82  E-value=18  Score=29.18  Aligned_cols=82  Identities=9%  Similarity=-0.064  Sum_probs=42.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105           88 PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT  167 (199)
Q Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  167 (199)
                      |-+..++..+-.++...-++.-....|.+++... .+-.+++.++.||.+. ..++=...+++.++.+-++...-..|+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            3344444444444444444444455555555543 2344555666666655 3444455566666665555555555555


Q ss_pred             HHHH
Q 029105          168 ALHL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      .|..
T Consensus       141 ~yEk  144 (711)
T COG1747         141 KYEK  144 (711)
T ss_pred             HHHH
Confidence            5544

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=81.16  E-value=18  Score=26.22  Aligned_cols=90  Identities=11%  Similarity=0.002  Sum_probs=38.8

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHhhcc------cccHH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELGDAW-NALKAATRATELE------QSWAE  126 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~------p~~~~  126 (199)
                      .++.-+..+.+.|++..|.+...-.++.     .+.+......+..+....+.-+ +-....++++.-.      -.++.
T Consensus        12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~   91 (260)
T PF04190_consen   12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPE   91 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HH
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHH
Confidence            3444445555555555554443332222     2222333345555554443322 1222333333221      24566


Q ss_pred             HHHHHHHHHHhcCChHHHHHHH
Q 029105          127 AWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      .+..+|..+.+.|++.+|..+|
T Consensus        92 LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   92 LHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHH
Confidence            7777777777777777666554

; PDB: 3LKU_E 2WPV_G.

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=80.36  E-value=4.6  Score=18.78  Aligned_cols=16  Identities=13%  Similarity=-0.172  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHhhccc
Q 029105          107 AWNALKAATRATELEQ  122 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p  122 (199)
                      ++.|..+|++.+..+|
T Consensus         3 ~dRAR~IyeR~v~~hp   18 (32)
T PF02184_consen    3 FDRARSIYERFVLVHP   18 (32)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            3444444444444443

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.24  E-value=22  Score=26.44  Aligned_cols=152  Identities=9%  Similarity=-0.045  Sum_probs=81.5

Q ss_pred             hcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHH---HHHccCCC--cHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWE---AALNLRPE--NAVLH   94 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~~l~~~~~--~~~~~   94 (199)
                      ++++......++++|+..|...          ...+.......++.+|...|++..-.+...   .+......  ...+.
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii   87 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII   87 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence            4556667778888888887766          112345577788888888887765433332   22222111  11111


Q ss_pred             HHH-HHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCcHHH
Q 029105           95 EQK-AQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAI----K--PDSEEA  161 (199)
Q Consensus        95 ~~l-a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~  161 (199)
                      ..+ -..-.....++.-+..+...++-....      ...-..+..++...|.|.+|+....-.+..    +  |.-...
T Consensus        88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v  167 (421)
T COG5159          88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV  167 (421)
T ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence            111 111112333444455555554432211      112345667788888888888777655532    1  333455


Q ss_pred             HHHHHHHHHHHhhhhhhhhh
Q 029105          162 RDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       162 ~~~l~~~~~~~~~~~~a~~~  181 (199)
                      +..-..+|.......++..+
T Consensus       168 hllESKvyh~irnv~KskaS  187 (421)
T COG5159         168 HLLESKVYHEIRNVSKSKAS  187 (421)
T ss_pred             hhhhHHHHHHHHhhhhhhhH
Confidence            55566667766666655443

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.20  E-value=8.3  Score=28.25  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             chhhHHHHHHHHhhHHHhc--ccHHHHHHHHHHHHccCCCcHHHHHHHHHHH------HHcCCHHHHHHHHHHHhhcccc
Q 029105           52 DAKQLALSFEAQGNNLAED--GKFREALGKWEAALNLRPENAVLHEQKAQVL------LELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      ..|.+-++|...-.++-.-  .++..-....++.++.++.|..+|...-.+.      .....+..-.++-..+|..++.
T Consensus       103 ~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~  182 (328)
T COG5536         103 DNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIY  182 (328)
T ss_pred             cCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCC
Confidence            4455555555554444333  5566667777888888888776665443333      3444455556777778888888


Q ss_pred             cHHHHHHH---HHHHHhcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          124 WAEAWITL---GRAQLNFGE------PDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       124 ~~~~~~~l---g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      +..+|...   -...+..|+      +++-+++.-.++-.+|++..+|..+--+
T Consensus       183 N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~  236 (328)
T COG5536         183 NNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV  236 (328)
T ss_pred             ChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence            88888776   333333444      4555667777777888887776655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-09
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-08
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		1e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-05
1wao_1	477	Pp5 Structure Length = 477		2e-05
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		3e-05
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-05
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		4e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-05
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-04
3cvq_A	327	Structure Of Peroxisomal Targeting Signal 1 (pts1)		2e-04
3cv0_A	327	Structure Of Peroxisomal Targeting Signal 1 (Pts1)		2e-04
4eqf_A	365	Trip8b-1a#206-567 Interacting With The Carboxy-Term		3e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		4e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-04

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P NA           + GD   A++   +A EL+ +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
            AEAW  LG A    G+ D+AIE +++AL + P++ EA+
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%)
Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P NA           + GD   A++   +A EL  +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
            AEAW  LG A    G+ D+AIE +++AL + P++ EA+ +   A
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P +A           + GD   A++   +A EL+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            AEAW  LG A    G+ D+AIE +++AL + P S EA
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 60  FEAQGNNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           F A  +NLA    + GK +EAL  ++ A+ + P  A  +      L E+ D   AL+  T
Sbjct: 42  FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101
Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           RA ++  ++A+A   L     + G   +AI S+  AL +KPD  +A
Sbjct: 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G +++A+  ++ AL L P NA           + GD   A++   +A EL+ +
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
            A+AW   G A    G+  KAIE +++AL + P++ +A+
Sbjct: 76  NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +GN   + G +  A+  +  A+   PENA+L+  +A  L +L +   AL        L+ 
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163
            + + +I      +   E  KA  ++E AL + P +EEAR+
Sbjct: 79  KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           QGN L    K+ EA   +  A+   P  AV +  +A   L++     AL    RA EL+ 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
              +A   LG+ QL     D+AI + +RA ++
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%)
Query: 60  FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
            + Q N+  +   +  A+  +  A+ L P NA+ +  ++   L       AL  ATRA E
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
           L++ + + +     + +  G+   A+  +E  + +KP  ++A+   Q
Sbjct: 69  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           GD   A++   +A EL+ + AEAW  LG A    G+ D+AIE +++AL + P++ EA+
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           QGN L    K+ EA   +  A+   P  AV +  +A   L++     AL    RA EL+ 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
              +A   LG+ QL     D+AI + +RA ++
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 57/109 (52%)
Query: 60  FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
            + +GN   +   F  A+  +  A+ L P NAV    +A    +LG+   A++   RA  
Sbjct: 15  LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
           ++ ++++A+  +G A  +  +  +A+  +++AL + PD+E  + + + A
Sbjct: 75  IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 49/103 (47%)
Query: 60  FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
            + Q N+  +   +  A+  +  A+ L P NA+ +  ++   L       AL  ATRA E
Sbjct: 16  LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           L++ + + +     + +  G+   A+  +E  + +KP  ++A+
Sbjct: 76  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
           A+ A  RA  L   +A+A+  LG    + GE DKAIE++E+ ++IKP
Sbjct: 92  AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           LAL  + +GN   + G + +A+  +  A+   P++A L+  +A    +L +   ALK   
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
              +LE ++ + +     A     +  KA++ +++AL +    +EA D  Q
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN L E   F  A+  +  AL+L P +AV+H   A V  E G    A+    RA EL+  
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
           + +A+  L  A    G   +A + +  AL + P
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 67  LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA-ATRATELEQSWA 125
            A   ++RE      AAL + P +A LH     VL  L + +++  A   RA EL    A
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 126 EAWITLGRAQLNFGEPDKAIESFERALAIKP 156
           + W  LG    N   P +A++++ RAL I P
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINP 237

>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 67  LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA-ATRATELEQSWA 125
            A   ++RE      AAL + P +A LH     VL  L + +++  A   RA EL    A
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 126 EAWITLGRAQLNFGEPDKAIESFERALAIKP 156
           + W  LG    N   P +A++++ RAL I P
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINP 237

>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 7   KNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNN 66
           KNK       ++    P D    E G+    LE    N +  +P     L + F      
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLE-GVKELYLEAAHQNGDMIDPDLQTGLGVLFHL---- 225
Query: 67  LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126
               G+F  A+  + AAL +RPE+  L  +    L     +  A++A TRA E++  +  
Sbjct: 226 ---SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282
Query: 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
           +   LG + +N G   +A+ +F  AL+++  S
Sbjct: 283 SRYNLGISCINLGAYREAVSNFLTALSLQRKS 314

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           QGN+L + G +REA+  ++  +  +P+N V +  KA  L++LG+   A++   +      
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 123 SWAEAWI-------------TLGRAQLNFGEPDKAIESFERA 151
           +     I              +G  Q+   E D+  E ++R+
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
           GD   A++   +A EL+   AEAW  LG A    G+ D+AIE +++AL + P S
Sbjct: 17  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-18
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-18
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	8e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	7e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	5e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	6e-04

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 83.4 bits (207), Expect = 4e-21
 Identities = 27/120 (22%), Positives = 60/120 (50%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
              A   + +GN   +   F  A+  +  A+ L P NAV    +A    +LG+   A++ 
Sbjct: 9   SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD 68

Query: 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173
             RA  ++ ++++A+  +G A  +  +  +A+  +++AL + PD+E  + + + A   ++
Sbjct: 69  CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 4e-19
 Identities = 28/128 (21%), Positives = 60/128 (46%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
            G  L   G+  +AL ++ AA++  P+N + + ++A V L +G +  AL   T+   L+ 
Sbjct: 9   LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182
            +  A +  G   L  G+ D+A + F++ L   P  +E ++     +   + ++    + 
Sbjct: 69  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128

Query: 183 LSNDANRF 190
            + D   +
Sbjct: 129 DAFDGADY 136

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAV----LHEQKAQVLLELGDAWNALKAATRAT 118
               L  DG++ +A  K+E+ +   P  A       E+      +      A++  +   
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299

Query: 119 ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           ++E     A      A L     D+AI+ +E A     + ++ R+  + A  L+K+ +
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 79.6 bits (197), Expect = 5e-18
 Identities = 19/137 (13%), Positives = 48/137 (35%)

Query: 40  KNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ 99
              +  E +             +Q  +  +   +  A+   +  L +   +A L E +A+
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

Query: 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
             ++ G+   A+     A++L+    EA+  +       G+ + ++      L +  D +
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222

Query: 160 EARDDRQTALHLVKRRK 176
                 +    L K  +
Sbjct: 223 RCFAHYKQVKKLNKLIE 239

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +     ++G+ R+A+   +AA  L+ +N     + + +  +LGD   +L       +L+Q
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 123 SWAEAWITLGRAQ------------LNFGEPDKAIESFERALAIKPDSEEAR 162
                +    + +            +  G    A   +E  +  +P   E  
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENA------------VLHEQKAQVLLELGDAWNAL 111
                + G    +L +    L L  ++                 + A+ L+  G   +A 
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254

Query: 112 KAATRATELE----QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167
                  + E    +    +   +        +P +AI      L ++PD+  A  DR  
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314

Query: 168 ALHLVKR 174
           A  + + 
Sbjct: 315 AYLIEEM 321

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 17/76 (22%), Positives = 29/76 (38%)

Query: 90  NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149
           +   H +  + LL  G   +AL     A + +     A+       L  G+   A+    
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 150 RALAIKPDSEEARDDR 165
           + +A+K D   AR  R
Sbjct: 62  KVIALKMDFTAARLQR 77

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%)

Query: 49  EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108
           EP  A+    S E   +  ++D K  EA+      L + P+N    + +A+  L      
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323

Query: 109 NALKAATRATELEQSWAEAWITLGRAQL 136
            A++    A E  ++  +    L +AQ 
Sbjct: 324 EAIQDYEAAQEHNENDQQIREGLEKAQR 351

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            E  + LG+  L  G+   A+  F  A+   PD+  A   R T    + +
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK 52

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 27/128 (21%), Positives = 61/128 (47%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
            G  L   G+  +AL ++ AA++  P+N + + ++A V L +G +  AL   T+  +L+ 
Sbjct: 32  LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182
            +  A +  G   L  G+ D+A + F++ L   P   E ++ +   +   + ++    + 
Sbjct: 92  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151

Query: 183 LSNDANRF 190
            +  +  +
Sbjct: 152 NAFGSGDY 159

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 22/137 (16%), Positives = 49/137 (35%)

Query: 40  KNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ 99
             ++  E Q             +Q  N    G +  A+   +  L +   +A L E +A+
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185

Query: 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
             ++ G+   A+     A++L+    EA+  +       G+ + ++      L +  D +
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245

Query: 160 EARDDRQTALHLVKRRK 176
                 +    L K  +
Sbjct: 246 RCFAHYKQVKKLNKLIE 262

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENA----VLHEQKAQVLLELGDAWNALKAATRA 117
                L  DG++ +A  K+E+ +   P  A       E+      +      A++  +  
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321

Query: 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177
            ++E     A      A L     D+AI+ +E A     + ++ R+  + A  L+K+ + 
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381

Query: 178 LHLS---GLSNDAN 188
                  G+  +A 
Sbjct: 382 RDYYKILGVKRNAK 395

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G +L  +  + +++   E  L L            + LL  G   +AL     A + +  
Sbjct: 10  GVDLGTENLYFQSMADVEKHLEL-----------GKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
              A+       L  G+   A+    + + +K D   AR  R
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 12/111 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                ++G+ R+A+   +AA  L+ +N     + + +  +LGD   +L       +L+Q 
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 124 WAEAWITLGRAQ------------LNFGEPDKAIESFERALAIKPDSEEAR 162
               +    + +            +  G    A   +E  +  +P   E  
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 22/113 (19%), Positives = 41/113 (36%)

Query: 49  EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108
           EP  A+    S E   +  ++D K  EA+      L + P+N    + +A+  L      
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346

Query: 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            A++    A E  ++  +    L +AQ    +  K        +      +E 
Sbjct: 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 94  HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
           H      L      + ++              E  + LG+  L  G+   A+  F  A+ 
Sbjct: 6   HHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQFHAAVD 54

Query: 154 IKPDSEEARDDRQTALHLVKR 174
             PD+  A   R T    + +
Sbjct: 55  GDPDNYIAYYRRATVFLAMGK 75

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 81.8 bits (201), Expect = 2e-18
 Identities = 30/99 (30%), Positives = 50/99 (50%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            + L + GK +EAL  ++ A+ + P  A  +      L E+ D   AL+  TRA ++  +
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           +A+A   L     + G   +AI S+  AL +KPD  +A 
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 27/111 (24%), Positives = 45/111 (40%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N   E G   EA+  +  AL + PE A  H   A VL + G    AL     A  +  +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +A+A+  +G       +   A++ + RA+ I P   +A  +  +       
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 22/108 (20%), Positives = 41/108 (37%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN L E    + AL  +  A+ + P  A  H   A +  + G+   A+ +   A +L+  
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
           + +A+  L        +     E  ++ ++I  D  E         H 
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHH 191

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.8 bits (131), Expect = 3e-09
 Identities = 18/87 (20%), Positives = 34/87 (39%)

Query: 84  LNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK 143
               P +A      A +  E G+   A++   +A E+   +A A   L       G+  +
Sbjct: 2   PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61

Query: 144 AIESFERALAIKPDSEEARDDRQTALH 170
           A+  ++ A+ I P   +A  +    L 
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLK 88

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 1/125 (0%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
             A +     +   + G   EA+  +  AL L+P+    +   A  L  + D  +  +  
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +   +     E    L     +          F +A+A +  +              + 
Sbjct: 169 KKLVSIVADQLEKN-RLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEH 227

Query: 175 RKHLH 179
            K L 
Sbjct: 228 PKDLK 232

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 77.0 bits (190), Expect = 3e-18
 Identities = 28/131 (21%), Positives = 59/131 (45%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105
           +      A + A   + Q N+  +   +  A+  +  A+ L P NA+ +  ++   L   
Sbjct: 2   DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61

Query: 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
               AL  ATRA EL++ + + +     + +  G+   A+  +E  + +KP  ++A+   
Sbjct: 62  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121

Query: 166 QTALHLVKRRK 176
           Q    +VK++ 
Sbjct: 122 QECNKIVKQKA 132

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 75.3 bits (186), Expect = 4e-18
 Identities = 21/114 (18%), Positives = 47/114 (41%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           +     + +GN     G   +AL  +  A+ L P N VL+  ++    + GD   A +  
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
            +  +L+  W + +     A       ++A  ++E  L  + ++ + ++  Q  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 75.7 bits (187), Expect = 5e-18
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 43  DNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102
            ++ H    +   LAL  + +GN   + G + +A+  +  A+   P++A L+  +A    
Sbjct: 3   HHHHHHSHMN-PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT 61

Query: 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           +L +   ALK      +LE ++ + +     A     +  KA++ +++AL +    +EA 
Sbjct: 62  KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121

Query: 163 DDRQTAL 169
           D  Q  +
Sbjct: 122 DGYQRCM 128

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 79.9 bits (197), Expect = 7e-18
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            +     G         +  L L P +     +  +V         A     +A++    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
                + LG A  + G+ + A  ++ RA  + P+     
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 71.4 bits (175), Expect = 6e-15
 Identities = 21/91 (23%), Positives = 31/91 (34%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
                 L +  AA+  RP++ V     A   L +GD      A  R   L     EA   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           LGR +       +A    ++A    P+    
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 18/98 (18%), Positives = 28/98 (28%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G       +  EA    + A +  PE+  +       L + G A  A  A TRA +L   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                  L   +    +         +  A       A
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 30/115 (26%), Positives = 54/115 (46%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
            +LA   + +GN   + G +  A+  +  A+   PENA+L+  +A  L +L +   AL  
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
                 L+  + + +I      +   E  KA  ++E AL + P +EEAR+  +  
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 26/98 (26%), Positives = 45/98 (45%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN L   G+  EA   +  A+  +P  AV       V    G+ W A+    +A  L+ +
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           + +A+I LG         D+A+ ++ RAL++ P+    
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
              L   G    A+  + +AL   P+   +      +L  LG    A     +A E + +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +A AW  LG      GE   AI  FE+A+ + P+  +A
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 30/98 (30%), Positives = 46/98 (46%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN L E   F  A+  +  AL+L P +AV+H   A V  E G    A+    RA EL+  
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           + +A+  L  A    G   +A + +  AL + P   ++
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.7 bits (182), Expect = 6e-16
 Identities = 22/112 (19%), Positives = 42/112 (37%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
             +   +  +   +      A+   P  A  +     V  E G    A++    A  L+ 
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            + + +I L  A +  G+ + A++++  AL   PD    R D    L  + R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 25/98 (25%), Positives = 39/98 (39%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G      G+   A+  +E A+ L P     +     VL E      A+ A  RA  L  +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            A     L       G  D AI+++ RA+ ++P   +A
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 27/107 (25%), Positives = 44/107 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N L E G   EA   +  AL L P +A      A +  E G+   A++   +A E+   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           +A A   L       G+  +A+  ++ A+ I P   +A  +    L 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 23/112 (20%), Positives = 40/112 (35%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
             +   + G F  A           P+N  +    + +  +      +   +T A +   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
             AEA+  LG      G+  +AIE +  AL +KPD  +   +   AL     
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 24/98 (24%), Positives = 42/98 (42%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   E G+ +EA+  +  AL L+P+    +   A  L+  GD   A++A   A +    
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                  LG      G  ++A   + +A+  +P+   A
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 22/111 (19%), Positives = 41/111 (36%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                E G    A+  +  A+ L+P     +   A  L E G    A      A  L  +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            A++   L   +   G  ++A+  + +AL + P+   A  +  + L    +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 11/66 (16%), Positives = 19/66 (28%)

Query: 96  QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           + A    + GD   A +   +    E       + L          D++      A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 156 PDSEEA 161
           P   EA
Sbjct: 64  PLLAEA 69

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 21/77 (27%), Positives = 32/77 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N   E G   EA+  +  AL + PE A  H   A VL + G    AL     A  +  +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 124 WAEAWITLGRAQLNFGE 140
           +A+A+  +G       +
Sbjct: 372 FADAYSNMGNTLKEMQD 388

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 21/113 (18%), Positives = 49/113 (43%)

Query: 49  EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108
                   +   +++GN      ++ +A+  +  AL++ P N +    +A      G   
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            A + A  AT ++  +++AW  LG A+ +  +   A E++E+ +  + +    
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 21/114 (18%), Positives = 43/114 (37%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G        +  A+  +   +   PE+A  +  +A  L +L     A+    +A E + 
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           ++  A+I    AQ+   E   A+E+ + A     +       R+      K  +
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           +A   +A+GN   +  +F EA+  +  A  L   +      +A    E G+   A+    
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLN 62

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            A E  +     +  + ++    G     +   ++ +     S   
Sbjct: 63  DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
             + A  G     LG  +  +    ++   H + A +L +L +A   LK A     +   
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            AE     G+      +   A++++   +   P+    
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 25/111 (22%), Positives = 39/111 (35%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            + L +     + L K EA   + PE A     + +      D  NA+KA T   +    
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            A  +     A        +AI    +A+   P+   A   + TA   VK 
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.4 bits (150), Expect = 7e-12
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                E G++  A+     A+    E    ++  ++    +G+A++ L    +  E  Q 
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                 T           +K ++  E    + P+  E 
Sbjct: 105 SLTEHRT-ADILTKLRNAEKELKKAEAEAYVNPEKAEE 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 88  PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147
              A   + +     +      A++   +A EL +           A+   GE + AI +
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAIST 60

Query: 148 FERALAIKPDSEEA 161
              A+    +    
Sbjct: 61  LNDAVEQGREMRAD 74

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 50  PFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109
           P      A   + QGN L    K+ EA   +  A+   P  AV +  +A   L++     
Sbjct: 2   PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ 61

Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA-RDDRQTA 168
           AL    RA EL+    +A   LG+ QL     D+AI + +RA ++  +      DD  +A
Sbjct: 62  ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 121

Query: 169 LHLVKRRK 176
           L + K+++
Sbjct: 122 LRIAKKKR 129

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 73.3 bits (181), Expect = 3e-16
 Identities = 23/101 (22%), Positives = 44/101 (43%)

Query: 61  EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
             Q    +E G + +A   +  A+    E+A+ +   A +L  + +   AL    +A EL
Sbjct: 27  GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL 86

Query: 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           + S A A+   G   +      +A + FE+AL    ++ + 
Sbjct: 87  DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 25/111 (22%), Positives = 42/111 (37%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  L +  + + AL   + A+ L   +     Q    L   G    AL      TE +  
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            A+A+   G         +KA+E  ++A+ I+PD   A   ++   H    
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 68.7 bits (169), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 35/98 (35%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N L+   +   AL  ++ AL L    A  +     V +       A     +A      
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             + +  LG   +   +P  A+   +RA+ +  +  EA
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 68.3 bits (168), Expect = 2e-14
 Identities = 29/98 (29%), Positives = 39/98 (39%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN       ++EA   +E AL    EN  L      VL++L     AL    RA EL ++
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             EA    G    N G  D+A+  F       P   +A
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 75  EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN----ALKAATRATELEQSWAEAWIT 130
            +      +  L P  + +        +  G  +     A +A T+A E  +  A  +I 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                 +  E ++A+  +++AL +   +  A
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATA 93

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 70.1 bits (172), Expect = 8e-16
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 34  SGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP---EN 90
           S           E +              +GN L + G +  AL  +  AL L     + 
Sbjct: 5   SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ 64

Query: 91  AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150
           AVLH  +A   L+L D   A   A++A E +    +A     +A    G  D+A+   +R
Sbjct: 65  AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124

Query: 151 ALAIKPDSEEARD 163
            ++++P ++  ++
Sbjct: 125 CVSLEPKNKVFQE 137

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
              A++ +  GN   +   F +A   ++ A+ L P N   +  KA V  E       ++ 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 114 ATRATELEQSW-------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
             +A E+ +         A+A    G A     +   A++ F R+L+   D E  +
Sbjct: 65  CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 21/128 (16%), Positives = 35/128 (27%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G ++ +     EA   +EA     PE             E      A+ A   A  L+ 
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182
                   L  +  N    + A+ S    L  +P  E+       A   +          
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146

Query: 183 LSNDANRF 190
                N +
Sbjct: 147 FFAAPNEY 154

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 19/106 (17%), Positives = 35/106 (33%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G        +  A      A+ LRP++A L  +    L        AL A  RA ++   
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
           +      +  +  N  + D A +   RA+ ++        +     
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 16/91 (17%), Positives = 28/91 (30%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
           G   +    +    N          ++   +L+L +   A  A     +      EAW +
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           LG  Q    +   AI +   A  + P     
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ---------------VLLELGDAW 108
             +   +     AL    A L  +P+   L     Q                     +  
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                   A E+  + A+   +LG         D A  +  RA+ ++PD  + 
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 12/103 (11%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  LA   + +EAL  +  AL++ P    +    A     +     A K   RA  ++  
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 124 WAEA------------WITLGRAQLNFGEPDKAIESFERALAI 154
                           W            PD    ++ + +  
Sbjct: 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 22/120 (18%), Positives = 44/120 (36%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           A     +G        +  A+  +   +   PE+A  +  +A  L +L     A+    +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           A E + ++  A+I    AQ+   E   A+E+ + A     +       R+      K  +
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 64  GNNLAEDGKFREALGKWEAALNLR----PENAVLHEQKAQVLLELGDAWNALKAATRATE 119
              L    +    L + E  L  R     E A L  ++  +   LG    A    ++A  
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +     E +  LG      G  D A E+F+  L + P    A  +R  AL+   R
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 19/98 (19%), Positives = 32/98 (32%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G      G    A   +  AL +RP+   +       L + G+   A +A     EL+ +
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +  A +  G A    G    A +         P+    
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 36/149 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD----------------- 106
           G  L   G+ + A     A     P +            +L +                 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 107 --AWN-----------------ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147
              WN                     AT  T L +  +E    LG+  L+ G+ D A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 148 FERALAIKPDSEEARDDRQTALHLVKRRK 176
           F+ A+A    +          L L+ + +
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQ 266

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  L + G F  A   +++ L L P     H  +   L   G    A        + + +
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL 178
                + L  A+    E  +A E  ++        +   +  +  L  +  +  +
Sbjct: 144 DPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 10/85 (11%), Positives = 21/85 (24%)

Query: 66  NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA 125
           N++E               +L    +  +    +  L LGD  +A      A        
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249

Query: 126 EAWITLGRAQLNFGEPDKAIESFER 150
                        G+    +   ++
Sbjct: 250 VEHRYALLELSLLGQDQDDLAESDQ 274

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 68.5 bits (168), Expect = 2e-15
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           + AL  +  GN+  +   F  AL  ++ A  L P N      +A V  E GD     +  
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 115 TRATEL-------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167
            +A E+        +  A+A+  +G +     +   AI  + ++LA     +  +  +Q 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121

Query: 168 ALHLVKRRK 176
              L ++ +
Sbjct: 122 EKILKEQER 130

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 18/88 (20%), Positives = 34/88 (38%)

Query: 75  EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134
               + EA L    +N +L     +   E      AL     A + + +++ AW  LG+ 
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 135 QLNFGEPDKAIESFERALAIKPDSEEAR 162
               G+   A +++E  LA      + +
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQ 90

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 1/140 (0%)

Query: 50  PFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109
           P   +  A+  + +GN+      F EA+  ++ A+ L P   V +   +   +  GD   
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77

Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
            ++  T+A E++   ++A +    A  + G    A+      L++  D + A  +     
Sbjct: 78  VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLER 136

Query: 170 HLVKRRKHLHLSGLSNDANR 189
           +L K+   +    LS D  R
Sbjct: 137 NLNKQAMKVLNENLSKDEGR 156

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 20/98 (20%), Positives = 35/98 (35%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
              LA+    +E    ++ A++L PE    +  + Q+   L D  NA +   +A  L   
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
               +I L       G+  ++   F       P   E 
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 18/98 (18%), Positives = 36/98 (36%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G        ++ A   ++ A +L PEN   + Q A +L + G    +            +
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             E          + G+ D AI+ ++ A  ++   E+ 
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 3/158 (1%)

Query: 6   NKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDA--KQLALSFEAQ 63
           +        +LQ+  +   +     + L     +            D   +  AL+    
Sbjct: 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G          +A    + ++NL P     +   A  L +  ++    K   +A +L   
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +   +   G+      +   A E F++A ++ P++   
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
              L + GKF E+   +       P    +    A++L + GD   A+K    A  LE+ 
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 124 WAEAWITLG----------------RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167
             +  + +G                  QL+  + + AI+   +A  + P SE+A+     
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470

Query: 168 ALH 170
              
Sbjct: 471 LKL 473

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-------------- 109
              L + G F  A+ +++ A  L      +H     ++ +                    
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 110 --ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             A+K  T+A EL+    +A I L + +L   + D+AIE FE +  +    +E 
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 71  GKFREALGKWEAALNLRPEN----AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126
           G              L P      AV  + +        +   A+K    A EL+ +   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +  +    ++ G+ +K IE   +AL IKPD  +A   R +A   +  
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
            +     +Q     ++ KF  A+     A  L P +       AQ+ L++     A++  
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             +  L ++  E       A+    +  K + +     A    +   
Sbjct: 486 EDSAILARTMDEKLQATTFAEA--AKIQKRLRADPIISAKMELTLAR 530

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 21/112 (18%), Positives = 38/112 (33%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           A G N  + GK+ +A   ++A   L   +A            LG    AL++ +    ++
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173
            +            L  G+ D A   F  A A+             A  +++
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 11/79 (13%), Positives = 26/79 (32%)

Query: 83  ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD 142
              L  +             + G   +A K       L+   A  ++ LG  + + G  +
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69

Query: 143 KAIESFERALAIKPDSEEA 161
           +A++S+     +  +    
Sbjct: 70  QALQSYSYGALMDINEPRF 88

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.8 bits (167), Expect = 4e-15
 Identities = 34/98 (34%), Positives = 51/98 (52%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P +A           + GD   A++   +A EL+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            AEAW  LG A    G+ D+AIE +++AL + P S EA
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 66.6 bits (164), Expect = 1e-14
 Identities = 32/95 (33%), Positives = 49/95 (51%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P +A           + GD   A++   +A EL+  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
            AEAW  LG A    G+ D+AIE +++AL + P S
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           AEAW  LG A    G+ D+AIE +++AL + P S EA
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 15/198 (7%)

Query: 5   WNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQ- 63
           + + K   +  +  +  L  + ++     + A    +D ++     +D       FE + 
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYD---KGYQFEEEN 59

Query: 64  -----------GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112
                      G    ++G    A+  +EAA+   P++    +       E      A+ 
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119

Query: 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
           A  R  EL+     A + L  +  N     +A E     L   P         +      
Sbjct: 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179

Query: 173 KRRKHLHLSGLSNDANRF 190
                  + G     + F
Sbjct: 180 GLGPSKRILGSLLSDSLF 197

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 27/107 (25%), Positives = 49/107 (45%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G      G++ +A+  + AAL++RP + +L  +    L     +  A+ A  RA EL+  
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           +  +   LG + +N G   +A+E F  AL ++  S   R +      
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLELGDAWNALKAATRATELE 121
             +L  D  F E    + AA+ L P +    +      +    G+   A+   T A  + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
            +    W  LG    N  + ++A+ ++ RAL ++P    +R
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  LA   +  EA+  +  AL L+P             + LG    A++    A  +++ 
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

Query: 124 WAEA-----------WITLGRAQLNFGEPDKAIESFERALAI 154
                          W TL  A    G+ D    +  R L+ 
Sbjct: 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 68.6 bits (169), Expect = 6e-15
 Identities = 12/98 (12%), Positives = 31/98 (31%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G + A+ G++ +A+   E   +    +  +        ++ G      +   R+      
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             +    LG   +   + D A+    +     P +   
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 15/98 (15%), Positives = 33/98 (33%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G    +  K+  A+          P N  +  +    L  LG    A+ +   A  L  +
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             +    +  +    G  ++A+  F++A  +   +   
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 21/98 (21%), Positives = 37/98 (37%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G    + G         E +L   P+N  +        +++     A+    +  E    
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                  LG A  N G  D+AI+SF+ AL ++P+  + 
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 3e-10
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 84  LNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK 143
           +       V +  K     + G    A+    +  + +    +  + LG A +  G  D+
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 144 AIESFERALAIKPDSEEA 161
             E  ER+LA  PD+ + 
Sbjct: 61  GTELLERSLADAPDNVKV 78

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 66.6 bits (164), Expect = 9e-15
 Identities = 34/98 (34%), Positives = 53/98 (54%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           GN   + G + EA+  ++ AL L P NA           + GD   A++   +A EL+ +
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            AEAW  LG A    G+ D+AIE +++AL + P++ EA
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           AEAW  LG A    G+ D+AIE +++AL + P++ EA
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 18/95 (18%), Positives = 29/95 (30%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G ++ +     EA   +EA     PE             E      A+ A   A  L+ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
                   L  +  N    + A+ S    L  +P 
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 94  HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
             ++   +L+L +   A  A     + E    EAW +LG  Q    +   AI +   A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 154 IKPDSEEAR 162
           + P      
Sbjct: 80  LDPKDIAVH 88

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 12/102 (11%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD---AWNALKAATRATE 119
             + L ++  + EA+  +      +  +  ++ ++A    EL     A   ++       
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             ++ +  +   G+  +  G+   AI+ ++ A+       + 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 20/98 (20%), Positives = 41/98 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  L + G+   A+ +++AA++       ++ Q        G+   A++   +      +
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             + +  LG+A     E  KA  SF + L +KP+    
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN---ALKAATRATEL 120
           G     + ++ +A   +   L L+P   + +  +A+             A     +  E+
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 121 EQS--------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
                        EA   +        +  KA  +++  LA+ P +++A D  +  L
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G+     G F  A+   E  +     +  +  +  Q      +   A  +  +  EL+ +
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 124 WAEAWITLGRA---QLNFGEPDKAIESFERALAIKPDSEEA 161
               ++   RA   Q    +   A   +E+ + +       
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 3/75 (4%)

Query: 90  NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI---E 146
           N  +  + A  L +  +   A++   +    + +    +           + D A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 147 SFERALAIKPDSEEA 161
           ++   +         
Sbjct: 62  TYFSKVNATKAKSAD 76

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 28/107 (26%), Positives = 51/107 (47%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G      G+F  A+  + AAL +RPE+  L  +    L     +  A++A TRA E++  
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           +  +   LG + +N G   +A+ +F  AL+++  S   +     A+ 
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 21/112 (18%), Positives = 44/112 (39%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G    ++G     +   EAA+   P +A   +       E  +   A+ A  R  EL+ 
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +  +A + L  +  N      A E+ +  +   P  +    +++ +  L +R
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
             +       ++A    +  +   P+   L + K            +   ++    +++ 
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

Query: 124 WAEA------------WITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           + EA               LG      GE ++AI++F  AL ++P+    
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 10/108 (9%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G   AE+   + A+   +  L L+P N       A          +A +A     +    
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 124 WAEAWITLG----------RAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +                  ++ ++    +   E +  A     D  + 
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 32/120 (26%), Positives = 53/120 (44%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           A   + QGN L    K+ EA   +  A+   P  AV +  +A   L++     AL    R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           A EL+    +A   LG+ QL     D+AI + +RA ++  +      D   +   + ++K
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 22  LPFDQQDQE-----HGLSGAELEKNDDNNEHQEPFDAKQLALSFE-------AQGNNLAE 69
           L +    +E       L   +L K    +E +   D        E        + + L  
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317

Query: 70  DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWI 129
             +F + L      L + P N  ++      L E G+       +    +     A  W+
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377

Query: 130 TLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            +G   L   +  +A   F ++  + P    A
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ- 122
           G    + G    A    +++  L   + +L  +   V     D   A+     A  L + 
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507

Query: 123 ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                  WA  W  LG A       D AI++  + L +  +    
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 18/98 (18%), Positives = 38/98 (38%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
             +L E G+  +        ++  PE AV         L +     A +  ++++ ++  
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +  AWI    +    GE D+AI ++  A  +   +   
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 7/113 (6%)

Query: 64  GNNLAEDGKFREALGKWEAALNL-------RPENAVLHEQKAQVLLELGDAWNALKAATR 116
           G         + A+  ++ AL L           A           +L     A+ A  +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
              L  + A     +    L+   P  AI     +LAI P+   A D  + AL
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 5/153 (3%)

Query: 13  KRSLQQFPNLPFDQQDQEHGLSGAELEKNDD----NNEHQEPFDAKQLALSFEAQGNNLA 68
           K +L                      E+ D     N       DA  L   +  + N  +
Sbjct: 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283

Query: 69  EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128
            + + R A   + +++N   +++ L   KA  L       + L   T+  E++    + +
Sbjct: 284 HEDELRRAE-DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342

Query: 129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                +    GE +K        +   P+    
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 18/109 (16%), Positives = 37/109 (33%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
              ++ A +G+  +A+  +  A  L     + +       ++LG+   A +    +  L 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           Q        LG    N  +   AI  F+ AL +   ++           
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 20/100 (20%), Positives = 32/100 (32%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           A G       K  EA   +  +  + P+        A      G+   A+ A T A  L 
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           Q     ++ LG   +  G    A E  + + A+       
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 15/132 (11%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 36  AELEKNDDNNEHQEPFDAKQLALSFEA---QGNNLAEDGKFREALGKWEAALNLRPENAV 92
               + D+ N ++       + L       +G        F  A   ++ AL +  +   
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235

Query: 93  LHEQKAQV-LLELGDAWNAL--KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149
             +Q     LL   + W+ +     +  ++ + ++  +   L   + +  +  +  E + 
Sbjct: 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295

Query: 150 RALAIKPDSEEA 161
            ++     S + 
Sbjct: 296 SSINGLEKSSDL 307

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
                 L  W+ ALNL          +     +     N L       +LE   A     
Sbjct: 157 AFCLVKLYDWQGALNLL--------GETNPFRKDEKNANKLLMQDGGIKLE---ASMCYL 205

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            G+   N    D+A E ++ AL +     EA
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.4 bits (158), Expect = 5e-14
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G    + G + E++  +E A+ L PE +     K + L  L     A+        + +
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 123 --SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
                + W     A       +   E  E    ++  
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 9e-12
 Identities = 10/74 (13%), Positives = 32/74 (43%)

Query: 88  PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147
            +N   +  +  +  + G+   ++    +A +L+   ++ W+  G+A  N    ++A++ 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 148 FERALAIKPDSEEA 161
           +   + +  D    
Sbjct: 63  YNYVINVIEDEYNK 76

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.3 bits (162), Expect = 7e-14
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 38  LEKNDDNNEHQEPFDAKQLALSFEAQGNNLA----EDGKFREALGKWEAALNLRPENAVL 93
           +  N D  E     +  + +         LA    ++  + +A   ++  L   P N   
Sbjct: 31  IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90

Query: 94  HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIESFERAL 152
            E  A++ +  G   +AL+   +  +LE     A I LG       E   K +E+  + L
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 153 AIKPDSEEARDDRQTALHLVKR 174
           +     + AR     +     R
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTR 172

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-ALKAATRATELEQ 122
                  G+ ++AL  +E  L L  +N   +           +     L+   +      
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
               A    G ++L     +KA  S ++ +   P +E  +
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 16/130 (12%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK----------------AQVLLELG 105
            + +   E G+  +A+  +   + L  +   ++                   A    +  
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
           +   A        +   +  +        Q+  G+   A+  +E+ L ++ D+  A    
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 166 QTALHLVKRR 175
               +L   +
Sbjct: 129 GNYYYLTAEQ 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.9 bits (158), Expect = 7e-14
 Identities = 13/110 (11%), Positives = 32/110 (29%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           +   N  + G + +A   ++A   L   ++            +G    A+ + +    ++
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
                         L  GE  +A      A  +  +  E  +       +
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 14/106 (13%), Positives = 26/106 (24%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
           G      G       +  +        A    + G   +A         L+   +  ++ 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           LG  +   G+ D AI S+     +              L       
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELA 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 68.2 bits (167), Expect = 7e-14
 Identities = 28/124 (22%), Positives = 58/124 (46%)

Query: 53  AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112
           A + A   + Q N+  +   +  A+  +  A+ L P NA+ +  ++   L       AL 
Sbjct: 2   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61

Query: 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172
            ATRA EL++ + + +     + +  G+   A+  +E  + +KP  ++A+   Q    +V
Sbjct: 62  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121

Query: 173 KRRK 176
           K++ 
Sbjct: 122 KQKA 125

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.9 bits (164), Expect = 8e-14
 Identities = 19/110 (17%), Positives = 39/110 (35%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           +  FE  G    +  K  +A   +E +L L      +  + A +L +  +   A +    
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
             +     A + +   R    F + D A     +   + P S E ++ + 
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 19/80 (23%), Positives = 29/80 (36%)

Query: 83  ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD 142
               R E    + Q     L+ G+   A     +A E++ S A+A   L        EP 
Sbjct: 29  TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88

Query: 143 KAIESFERALAIKPDSEEAR 162
            A E + +ALA    +    
Sbjct: 89  LADEEYRKALASDSRNARVL 108

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 64  GNNLAEDGKFREALGKWEAALN--LRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           G  L E  ++ EA  +   A    L PE + + E    V L++     A +   ++  L 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           ++     + +        E   A + ++        +  +
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 2/100 (2%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G    + G   +A      AL + P +A  H   A V     +   A +   +A   +  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALA--IKPDSEEA 161
            A      G         ++A +    A    + P+    
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 1/112 (0%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           +   +    G+  EA   +         N       A +         A      A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173
           ++        G+ QL    P KA E FE  +    D E+ +   Q+ L  ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND-EKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 8/105 (7%), Positives = 24/105 (22%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           +L+     +          +    +    +  +        A      G    A      
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
               +    +  + L        +  +A + +  A A+  +    
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 7/80 (8%), Positives = 21/80 (26%)

Query: 95  EQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
            +   +   + DA N+         +     +   +      N G  ++A   F      
Sbjct: 6   TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65

Query: 155 KPDSEEARDDRQTALHLVKR 174
              + +          + ++
Sbjct: 66  DFYNVDYIMGLAAIYQIKEQ 85

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 65.2 bits (160), Expect = 2e-13
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
               +    +     G   +AL   + A  + P  A LH Q+  V   LG+   A  +  
Sbjct: 83  YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +A  L +   E    L    L+ G  D+A+  + +AL   P   + R    +AL L  +
Sbjct: 143 QALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 65.2 bits (160), Expect = 2e-13
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G  L   G++  AL  +E AL   P++       A+  L+LG    AL+           
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 124 WAEAWITLGRA-----------QLNFGEPDKAIESFERALAIKPDSEEA 161
           +   ++ L  A           +   G  ++A+   + A  + P     
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-----------ALK 112
                + G    AL   +  +   P     +   ++  + L                AL 
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
               A  +   +A   +  G      GE DKA  S ++ALA++   E
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPE 152

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G   A  G+  +A    + AL L      +    A++ L +G    AL    +A E    
Sbjct: 125 GLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
             +  +    A L  G+ ++A  +         
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 18/68 (26%), Positives = 25/68 (36%)

Query: 94  HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
             +    L  LG    AL    RA +      EA   L R QL  G  + A+E+ +  +A
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 154 IKPDSEEA 161
             P     
Sbjct: 68  RTPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           Q+  +  + LG      G  D A+  FERAL   P   EA
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 15/111 (13%), Positives = 27/111 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V     +     L      L    +A  L   
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  + G  +       + +    +A  + P    A          ++ 
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 14/120 (11%), Positives = 29/120 (24%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           Q  ++  +           +  L     A  L P+  V           L      L   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L      A  +    +       + +    +A  + P+   A          ++ 
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.9 bits (161), Expect = 4e-13
 Identities = 15/122 (12%), Positives = 28/122 (22%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           Q  ++  +           +  L     A  L PE  V           L      L   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L      A  +    +       + +    +A  + P    A          ++ 
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461

Query: 175 RK 176
             
Sbjct: 462 IV 463

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 9e-13
 Identities = 15/111 (13%), Positives = 26/111 (23%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V           L      L    +A  L   
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  + G  +       + +    +A  + P    A          ++ 
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 15/111 (13%), Positives = 27/111 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V           L      L    +A  L   
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  + G  +       + +    +A  + P+   A          ++ 
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 16/120 (13%), Positives = 29/120 (24%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           Q  ++  +           +  L     A  L PE  V           L      L   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L      A  + G  +       + +    +A  + P    A          ++ 
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 223

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 13/120 (10%), Positives = 28/120 (23%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
           +  ++  +           +  L     A  L P+  V           L      L   
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L      A  +    +         +    +A  + P+   A          ++ 
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 15/112 (13%), Positives = 25/112 (22%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
                      +  L     A  L PE  V           L      L    +A  L  
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
               A  + G  +       + +    +A  + P    A          ++ 
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 257

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 4e-12
 Identities = 16/94 (17%), Positives = 23/94 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L PE  V           L      L    +A  L   
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
              A  + G  +         +   + ALA   +
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 6e-12
 Identities = 14/111 (12%), Positives = 25/111 (22%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V           L      L    +A  L   
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 274

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  +    +       + +    +A  + P    A          ++ 
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET 325

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 24/156 (15%), Positives = 38/156 (24%), Gaps = 6/156 (3%)

Query: 24  FDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA 83
            +     H  SGA   +       +      QL                  EA+  W  A
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-LLKIAKRGGVTAVEAVHAWRNA 59

Query: 84  L-----NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138
           L     NL PE  V           L      L    +A  L      A  +    +   
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 119

Query: 139 GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
               + +    +A  + P+   A          ++ 
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 155

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 20/98 (20%), Positives = 36/98 (36%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
              +A+     E    ++ AL L   N+ ++  + Q+   L +   A K   +A EL+  
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
               +I L        + D     F  A    P++ E 
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 2/108 (1%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
            + AL+ + +GN    + K+ +A+  +  AL L+  + V +   +   + +GD    ++ 
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM 61

Query: 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           +T+A EL+  +++  +    A    G+   A+      L++  D  +A
Sbjct: 62  STKALELKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDA 108

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE---------LGDAWNALKAA 114
              L +   F +AL +++ A+ L  +   ++   A ++ +         + +   A    
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
            +A++L+    +A I L + +L   + D+AI  FE +  +    EE 
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 15/98 (15%), Positives = 33/98 (33%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G        + +A   ++ A  L PEN   + Q A +        +     + A      
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             E          +  + DKA++ ++ A+ ++   +  
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                 + KF +    +  A    PE   +    A++L +  D   ALK    A ELE  
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404

Query: 124 WAEAWITLGRA---------QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
               ++ +                    +A    E+A  + P SE+A+          + 
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 8/163 (4%)

Query: 6   NKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGN 65
            +    +K   +  P++                   D++NE  +        L   +  +
Sbjct: 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES 204

Query: 66  NLAEDGKFREALGKWEAALN-------LRPENAVLHEQKAQVLLELGDAWNALKAATRAT 118
               D  F +A   +E  L+       L+ + A+  E          D   A +   +A 
Sbjct: 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264

Query: 119 ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           EL      ++I +     +  +  +    F++AL +  ++   
Sbjct: 265 ELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 87  RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIE 146
           + + A+  + K           +A+K    A EL++     +  L    ++ G+  K +E
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 147 SFERALAIKPDSEEARDDRQTALHLVKR 174
              +AL +KPD  +    R +A   + +
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGK 88

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
             +              F EA    E A  L P +       AQ+ L+  D   A+    
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
            + +L ++  E    +  A+    +  + I S         ++
Sbjct: 474 ESADLARTMEEKLQAITFAEA--AKVQQRIRSDPVLAKKIQET 514

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPE---------NAVLHEQKAQVLLELGDAWNALKAA 114
           G    ++G+++ A   +  AL                 L      V  +L     AL   
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L    A  +  +G      G  + A++ F  AL ++ D   +       + +   
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           +       +  F+         +   P +A         L+EL  A      + +  +L 
Sbjct: 27  SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86

Query: 122 QSWAEAWITLGRAQLNFGE-PDKAIESFERALAIKPDSEEA 161
            S   +W  +G   L  G   + A     +A  ++     A
Sbjct: 87  PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 15/100 (15%), Positives = 31/100 (31%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           A G++ A + +  +A+  +  A  L     +             ++  A +  ++A  + 
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                    +G      GE   A + F  AL         
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 64  GNNLAEDGKFRE-ALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           G      G   E A      A  L                   +   A+ A   A +L +
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                 + +G           A   F +AL+I P+    
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 33/86 (38%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G+   +  K+ EAL     AL L P+NA  +     +   +G+  NA+     A  L + 
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFE 149
              +   LG     +    +A    +
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 8/79 (10%), Positives = 24/79 (30%)

Query: 83  ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD 142
           +++   EN  +    A+      D     K  +   E +   A          +   + +
Sbjct: 14  SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73

Query: 143 KAIESFERALAIKPDSEEA 161
           +      + + + P +  +
Sbjct: 74  ELFYLSHKLVDLYPSNPVS 92

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.1 bits (153), Expect = 4e-12
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 61  EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAATRATE 119
           +A         +  + L + E  L      A     K + L    D +  A    ++A +
Sbjct: 72  DAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
           LE    EAW  LG      G+   A   F  AL    +  
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 18/130 (13%), Positives = 39/130 (30%), Gaps = 11/130 (8%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----------VLHEQKAQVLLEL 104
           + L      +         +++ + + A+ +   +             L+    Q     
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237

Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164
             A +A   A +      S  +  +             +A+E F +A A+ P   E +  
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297

Query: 165 RQTALHLVKR 174
            Q  L  + R
Sbjct: 298 EQQLLEFLSR 307

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 18/103 (17%), Positives = 31/103 (30%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
               +   G N     +   A  + E        N  LH  +A +         AL+  +
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
           +A  L+ +W E      +           +ES  +    K  S
Sbjct: 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQS 325

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 9/108 (8%)

Query: 63  QGNNLAEDGKF-REALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           +G  L     +  EA      A+ L PE      Q  +V  + GD  +A    + A    
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 122 --------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                    S     +       +      ++   + A+ +      +
Sbjct: 168 KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 15/144 (10%), Positives = 34/144 (23%), Gaps = 15/144 (10%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105
            H      +   ++    G  +       +   + +  L                  E  
Sbjct: 9   HHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETH 68

Query: 106 DAWN--------------ALKAATRATELEQSWAEAWITLGRAQLNFGEPDK-AIESFER 150
              +               L+         Q  A+A +  G+A     +    A     +
Sbjct: 69  SVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSK 128

Query: 151 ALAIKPDSEEARDDRQTALHLVKR 174
           A+ ++P+  EA +           
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGD 152

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 21/76 (27%), Positives = 31/76 (40%)

Query: 87  RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIE 146
             + + +  Q A   +   D   A  +   A + +     AW+            DKA E
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 147 SFERALAIKPDSEEAR 162
           SF +AL+IKPDS E  
Sbjct: 64  SFRQALSIKPDSAEIN 79

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 65  NNLA-----EDGKFREALGKWEAALN--LRPENAVLHEQKAQVLLELGDAWNALKAATRA 117
           NN          +  E++  ++ AL     P   + +  K     + G    A     R+
Sbjct: 80  NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139

Query: 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
              +  +  A+  L R ++  G+   A   F++  +     +  
Sbjct: 140 LAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL-ELGDAWNALKAATRATE--L 120
                      +A   +  AL+++P++A ++      L   L     ++    +A     
Sbjct: 49  AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT 108

Query: 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
             +   A +  G      G+   A    +R+LA +P    A
Sbjct: 109 YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
            ++   +G   A+ G+F  A    + +L  +P+     ++ A+  +  G   +A     +
Sbjct: 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK---PDSEEAR 162
                +      + LG           A  ++E    ++   P SEE +
Sbjct: 173 YQSRVEVLQADDLLLGWKIA--KALGNAQAAYEYEAQLQANFPYSEELQ 219

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 119 ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           E     +     L    +   +  +A  S E AL   P +E A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.7 bits (144), Expect = 6e-11
 Identities = 14/106 (13%), Positives = 23/106 (21%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                     +  L     A  L P+  V           L      L    +A  L   
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
              A  +    +       + +    +A  + PD   A        
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 13/108 (12%), Positives = 22/108 (20%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
                      +  L     A  L P   V           L      L    +A  L  
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
               A  + G  +       + +    +A  +  +   A         
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQ 712

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 14/111 (12%), Positives = 25/111 (22%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L     V           L      L    +A  L  +
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  +    +       + +    +A  + PD   A          ++ 
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 682

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 17/108 (15%), Positives = 26/108 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V           L      L    +A  L   
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
              A  + G  +       + +    +A  + PD   A         L
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL 408

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 14/120 (11%), Positives = 27/120 (22%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
              ++  +           +  L     A  L P   V           L      L   
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            +A  L      A  +    +       + +    +A  + PD   A          ++ 
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 15/116 (12%), Positives = 27/116 (23%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
              ++  +           +  L     A  L P+  V           L      L   
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
            +A  L      A  + G  +       + +    +A  + PD   A         
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQ 339

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 7e-10
 Identities = 13/111 (11%), Positives = 23/111 (20%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                     +  L        L P   V           L      L    +A  L   
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  +    +       + +    +A  + PD   A          ++ 
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 546

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 7e-10
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 1/120 (0%)

Query: 51  FDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110
            D  Q  +    +G   A +           A LNL P   V           L      
Sbjct: 153 LDTGQ-LVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211

Query: 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           L    +A  L  +   A  +    +       + +    +A  + PD   A         
Sbjct: 212 LPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQ 271

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 15/111 (13%), Positives = 26/111 (23%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                     +  L     A  L P+  V           L      L    +A  L Q 
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  +    +       + +    +A  + PD   A          ++ 
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 750

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 14/104 (13%), Positives = 24/104 (23%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
              +  L     A  L  E  V           L      L    +A  L      A  +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            G  +       + +    +A  + P    A          ++ 
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALET 784

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 15/111 (13%), Positives = 27/111 (24%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                     ++ L     A  L P+  V           L      L    +A  L   
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  + G  +       + +    +A  + PD   A          ++ 
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 580

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 14/122 (11%), Positives = 29/122 (23%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
            ++  +           +  L     A  L P+  V           L      L    +
Sbjct: 497 VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           A  L      A  + G  +       + +    +A  +      A          ++  +
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616

Query: 177 HL 178
            L
Sbjct: 617 RL 618

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 15/111 (13%), Positives = 26/111 (23%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G         +  L     A  L P+  V           L      L    +A  L Q 
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
              A  +    +       + +    +A  + P    A          ++ 
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 13/104 (12%), Positives = 24/104 (23%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
              +  L     A  L P+  V           L      L    +   L  +   A  +
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
               +       + +    +A  + PD   A          +  
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALAT 512

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 11/104 (10%), Positives = 23/104 (22%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
              +  L     A  L P+  V           L      L    +A  L  +   A  +
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
               +       + +    +   +      A          ++ 
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALET 818

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 17/108 (15%), Positives = 37/108 (34%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           AQ   +A +   ++AL   +  L +  +   L + +   +        AL+   R   + 
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVL 860

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
                       A  +     +A+E+ +R L +         D+  A+
Sbjct: 861 CQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI 908

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 11/108 (10%), Positives = 23/108 (21%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
                A +    +A       L L     V   ++  V        +          L  
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           +   A  +    +       + +    +A  + P    A         
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 237

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/108 (15%), Positives = 37/108 (34%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
           AQ   +A +   ++AL   +  L +  ++  L   +   +        AL+   R   + 
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVL 826

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169
                       A  +     +A+E+ +R L +         D+  A+
Sbjct: 827 CQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAI 874

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 13/112 (11%), Positives = 24/112 (21%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
            G         +  L     A  L P   V           L      L    +   L  
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +   A  +    +       + +    +A  +  D   A          ++ 
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALET 852

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 13/142 (9%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA---------LNLRPENAVLHEQ 96
           +   P   +   L+ + Q   +A +   ++AL   +           L L    A+    
Sbjct: 854 QRLLPVLCQDHGLTPD-QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNG 912

Query: 97  KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
             Q    L      L    +   L      A  +    +       + +    +   + P
Sbjct: 913 GKQ---ALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTP 969

Query: 157 DSEEARDDRQTALHLVKRRKHL 178
           +   A         L      L
Sbjct: 970 NQVVAIASNGGKQALESIVAQL 991

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
               + QGN+L + G +REA+  ++  +  +P+N V +  KA  L++LG+   A++   +
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL-AIKPDSEEAR 162
                 +     I     Q        A+ S +  +  +    E   
Sbjct: 64  GLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYD 109

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 59.3 bits (143), Expect = 8e-11
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEA---ALNLRPENAVLHEQKAQVLLELGDAWNALK 112
            AL    + +    D K   AL         L      +++++ KA   L  G    + +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           A     +LE SW   ++ LG+     G   +A +++  A  ++P +    
Sbjct: 299 AINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 14/74 (18%), Positives = 28/74 (37%)

Query: 88  PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147
           PE+       AQ  L+  +A  AL       E +  +   +  LG+        D AI++
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 148 FERALAIKPDSEEA 161
           + + + +  +    
Sbjct: 64  YAQGIEVAREEGTQ 77

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 66  NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN----ALKAATRATELE 121
            L      + A+     A+ L P+N  L    A  L ++ +         K    A E  
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
               +   +  +      EPDKAIE  ++AL   P++   
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 19/117 (16%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-------------- 109
                   +  +A+   + AL   P NA LH Q                           
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 110 -----ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
                A+    +A E   +       L        + ++A   F++  + +      
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 4/129 (3%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113
           + + L                 A+   + A         +    A +         A   
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356

Query: 114 ATRATELEQSWAEAWIT---LGRAQLNF-GEPDKAIESFERALAIKPDSEEARDDRQTAL 169
             +    E +     +     G  QL      DKAI  F   + I   S E    +    
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416

Query: 170 HLVKRRKHL 178
            + K R   
Sbjct: 417 KIAKMRLSK 425

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 19/117 (16%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                E  +  E     E AL   P    +    A+      +   A++   +A E   +
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 124 WAEAWITLG---RAQLNFGEPD----------------KAIESFERALAIKPDSEEA 161
            A     +G   RA++                       A+   ++A     +    
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 19/135 (14%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK-------- 97
              E  + +  A             G+   AL     A  L  +      +         
Sbjct: 40  YRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN 99

Query: 98  -AQVLLELGDAWNALKAATRATELEQ--------SWAEAWITLGRAQLNFG--EPDKAIE 146
            A V   +G   +      +   + +           E     G  +L  G  + ++A  
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 147 SFERALAIKPDSEEA 161
            FE+AL  KP + E 
Sbjct: 160 CFEKALEKKPKNPEF 174

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 13/119 (10%)

Query: 71  GKFREALGKWEAALNLRPENAVLHE-QKAQVLLELGDAWN---------ALKAATRATEL 120
           G+  +     +   ++  + +  +  +  ++  E G             A     +A E 
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167

Query: 121 EQSWAEAWITLGRAQL---NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           +    E    L  A     N+     AI+   +A+ + PD++  +      LH ++   
Sbjct: 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 71  GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
               +A+  +   + +  ++    ++K +  L+        K A        + +EA   
Sbjct: 386 KCEDKAIHHFIEGVKINQKSR--EKEKMKDKLQ--------KIAKMRLSKNGADSEALHV 435

Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
           L   Q    +  +A E  ER L        A
Sbjct: 436 LAFLQELNEKMQQADEDSERGLESGSLIPSA 466

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 27  QDQEHGLSGAEL---EKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA 83
               H  SG E    +    +       +  Q A   + +GN   +  +  EA+ K++ A
Sbjct: 5   HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA 64

Query: 84  LNLRPENAVLHEQK----------------AQVLLELGDAWNALKAATRATELEQSWAEA 127
           L+         +Q                 A    +  D   A+  A++  +++++  +A
Sbjct: 65  LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124

Query: 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
              LG A + FG  ++A E+  +A ++ P++ + R+  +  ++ +K  +
Sbjct: 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 46  EHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105
           +         + L    +G  L   G  R  +  ++AA+    E+       + +  +LG
Sbjct: 37  QGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED---LRTLSAIYSQLG 93

Query: 106 DAWNAL----KAAT---------RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152
           +A+  L    KA           ++       A++   LG      G  D+A    ER L
Sbjct: 94  NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153

Query: 153 AIK 155
            + 
Sbjct: 154 TLA 156

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNL------RPENAVLHEQKAQVLLELGDAWNA 110
           +LS  A+  +    G         +                +    + + L   GD    
Sbjct: 8   SLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAG 67

Query: 111 L----KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           +     A    TE  ++ +  +  LG A    G+ +KA++  +  L + 
Sbjct: 68  VAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQK--AQVLLELGDAWNALKAATRAT 118
            NL       G F+ A+   +  L +  E     ++    +    LG++   L     A 
Sbjct: 227 GNLGNTYYLLGDFQAAIEHHQERLRIARE---FGDRAAERRANSNLGNSHIFLGQFEDAA 283

Query: 119 EL-EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           E  +++             A++  +LG       E + AIE   R LAI 
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
           +NL       G+F +A   ++  L L  E      + AQ    LG+ +  L     A E 
Sbjct: 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE-AQSCYSLGNTYTLLHEFNTAIEY 325

Query: 121 -EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAI 154
             +              A A  +LG A    G  ++A++  E+ L +
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 71  GKFREALGKWEAALNL---RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA 127
           G   +A+  +E A+       + A  +         LG+   A        +   +    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
            +       N G  ++ +E   + +A   D E 
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 104 LGDAWNALKAATRATEL---EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
           LG    A+    +A       +  AE ++ LG      GE  KA       +   P+ + 
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 161 ARDDRQTALHLVKR 174
            R      L+ + R
Sbjct: 63  LRVFYAMVLYNLGR 76

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 18/95 (18%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G+     G++R+A       +   P +  L    A VL  LG     ++   +       
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI------ 87

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
                       +     D+ I+S+++A+    D 
Sbjct: 88  ------------IAETSDDETIQSYKQAILFYADK 110

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G   A+   ++ AL  + A       ++ +      +   L +   A KA TR+   ++
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALA-IKPDSEEARDDRQTALHL 171
             A A+   G       + D AI+  + AL  ++ +             L
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA------ 117
           G          EA   +  ++N     AV + Q+  +  +      A+K    A      
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 118 ----------TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167
                      + +    E    +        E  KA E    A ++K +   ++ D+  
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK-- 161

Query: 168 ALHLVKRRKHLHL 180
           A+  V ++K    
Sbjct: 162 AMECVWKQKLYEP 174

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 50.5 bits (122), Expect = 4e-09
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 82  AALNLRPEN-AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140
            A++  P N A           + GD   A++   +A EL+ + AEAW  LG A    G+
Sbjct: 1   GAMD--PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 58

Query: 141 PDKAIESFERALAIKPDSEEA 161
            D+AIE +++AL + P++ EA
Sbjct: 59  YDEAIEYYQKALELDPNNAEA 79

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALN------------------LRPENAVLHEQ 96
           +   +   +GN L     ++EA+  +  AL                   L  +N  L+  
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 97  KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
            +Q  L +GD   A + ++   + E++  +A     +A++   + D+A E  +  L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 157 DSEEARDDRQTALHLVKRRK 176
            +          + +V  R+
Sbjct: 129 AAASV---VAREMKIVTERR 145

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 21/138 (15%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 54  KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK---------------A 98
            + +   + +G    ++GK+++AL +++  ++     +    ++               A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 99  QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
              L+L     A+++  +A EL+ +  +     G A L   + + A   F++ L + P++
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

Query: 159 EEARDDRQTALHLVKRRK 176
           + A+         ++R+ 
Sbjct: 264 KAAKTQLAVCQQRIRRQL 281

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 96  QKAQVLLELGDAWNALKAATRATELE-QSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
           +  + L+  GD  NAL+A     + E     EA+  +G A    G+  KA+ +++ A+ +
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 155 KPDSEEAR 162
            PDS   +
Sbjct: 65  NPDSPALQ 72

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 19/130 (14%)

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-- 109
             +   L    +G  L + G  R  +  +EAA+ +  E+    +  + +  +LG+A+   
Sbjct: 4   SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYL 60

Query: 110 -----ALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
                AL+       L ++       A+A   LG      G  D+AI   +R L I   S
Sbjct: 61  HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---S 117

Query: 159 EEARDDRQTA 168
            E  D    A
Sbjct: 118 RELNDKVGEA 127

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 22/110 (20%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQK--AQVLLELGDAWNALKAATRAT 118
            NL       G FR+A+   E  L +  E     ++    +    LG+A+  L     A+
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGEFETAS 247

Query: 119 EL-EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           E  +++             A++  +LG       + +KAI+   + LAI 
Sbjct: 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
           +NL       G+F  A   ++  L L          +AQ    LG+ +  L+   +A + 
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289

Query: 121 -EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
             +                A  +LG A    G  D+A+   E+ L I 
Sbjct: 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 40  KNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALN-LRPENAVLHEQK- 97
             D + + ++      ++   +  GN   +   +  A+ K+   L  +    A   +   
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265

Query: 98  --------------AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK 143
                             L++ D   A+ +   A E++ S  +A     +      E D+
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325

Query: 144 AIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           A+   ++A  I P+ +  + +       +K +K
Sbjct: 326 ALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN------- 109
            L    +G  L + G  R  +  +EAA+ +  E+    +  + +  +LG+A+        
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYAK 61

Query: 110 ALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           AL+       L ++       A+A   LG      G  D+AI   +R L I 
Sbjct: 62  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
            NL       G FR+A+   E  L +  E      +  +    LG+A+  L     A+E 
Sbjct: 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE-RRAYSNLGNAYIFLGEFETASEY 245

Query: 121 -EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
            +++             A++  +LG       + +KAI+   + LAI 
Sbjct: 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 18/108 (16%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
           +NL       G+F  A   ++  L L  +      + AQ    LG+ +  L+   +A + 
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAIDY 285

Query: 121 -EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
             +                A  +LG A    G  D+A+   E+ L I 
Sbjct: 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 3/113 (2%)

Query: 53  AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112
            +          +  A        L   +  +   P+N+       +  L   D  N+L 
Sbjct: 6   VRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL 65

Query: 113 AATRATELEQSWAEAWITLGRA---QLNFGEPDKAIESFERALAIKPDSEEAR 162
           A  +A +L    AE +  L      Q +     +     ++ALA+  +   A 
Sbjct: 66  AYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN---ALKAATRATEL 120
           G        +  +L  +  AL LR ENA L+   A VL                 +A  L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
           + +   A + L           +AIE +++ + +        
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 79  KWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138
           KW+A             Q A       +    L+A           +E W  LG   L  
Sbjct: 2   KWQAVRAEYQRQRDPLHQFAS----QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ 57

Query: 139 GEPDKAIESFERALAIKPDSEEARDDRQTAL 169
            +   ++ ++ +AL ++ ++ E      T L
Sbjct: 58  NDYSNSLLAYRQALQLRGENAELYAALATVL 88

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 41  NDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPENAV 92
               +   +  +  + A   + +G    + GK+ +A+ ++   ++           E+  
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311

Query: 93  LHEQK-------AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145
                       A   L+L +   A++   +A  L+ +  +     G AQL   E + A 
Sbjct: 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371

Query: 146 ESFERALAIKPDSEEAR 162
             FE+ L + P ++ AR
Sbjct: 372 GDFEKVLEVNPQNKAAR 388

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 17/171 (9%)

Query: 23  PFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEA 82
           P      E  + G +  K           +    A   +  GN+L ++ K  EA+ ++E 
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204

Query: 83  AL----NLRPENAVLHEQK-------------AQVLLELGDAWNALKAATRATELEQSWA 125
           A+    +          Q              A  L++L     A+         E+   
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264

Query: 126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           +A    G+A+   G+ D A + F +A    PD +  R + +      K   
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 23/151 (15%)

Query: 49  EPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------------NAVLHEQ 96
           +P      A    +        G++ EA      A+ +               +A  H  
Sbjct: 3   KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 62

Query: 97  KAQVLLELG-------DAWNALKAATRATELEQSWAEAWITL----GRAQLNFGEPDKAI 145
            A+ L  L         A  AL    R  EL Q   + WI+       A    G   +A+
Sbjct: 63  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 122

Query: 146 ESFERALAIKPDSEEARDDRQTALHLVKRRK 176
             F++ + +  + +     ++  + +   R 
Sbjct: 123 PEFKKVVEMIEERKGETPGKERMMEVAIDRI 153

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 1/138 (0%)

Query: 38  LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK 97
           + +ND  N   +   + +    ++     L  D +   A      A+ L   N  +   +
Sbjct: 78  VPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR 137

Query: 98  AQVLLELGDAWN-ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
             +L  L    +  +   T   E +    + W           +P + +E     L    
Sbjct: 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197

Query: 157 DSEEARDDRQTALHLVKR 174
            +  A   RQ  +   K 
Sbjct: 198 KNYHAWQHRQWVIQEFKL 215

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 13/98 (13%), Positives = 30/98 (30%)

Query: 73  FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132
             E +    A +  +P+N  +   +  ++  L D    L+        +     AW    
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
                F   D  ++  ++ L     +    + R   + 
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 56  LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
           L     A  +  A   K ++A   ++   +      +L   +A   +  G    A     
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224

Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESF-ERALAIKPDSEEARD 163
            A + +    E  I L     + G+P +    +  +           ++
Sbjct: 225 EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 2/132 (1%)

Query: 33  LSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92
           ++ +    + + +                     L +  +   A  + +   +   +  +
Sbjct: 106 MAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL 165

Query: 93  LHEQKAQVLLELGDAW--NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150
                A V L  G     +A        +                +  G  + A    + 
Sbjct: 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225

Query: 151 ALAIKPDSEEAR 162
           AL       E  
Sbjct: 226 ALDKDSGHPETL 237

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 13/144 (9%)

Query: 25  DQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAAL 84
            +  + +G      E  +     Q+         S   +G    +  ++ EA+G +  A 
Sbjct: 69  LEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAE 128

Query: 85  NL------RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AEAWITL 131
                     E A  H + A+    +     ++    +A ++ Q+         ++   +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

Query: 132 GRAQLNFGEPDKAIESFERALAIK 155
                +F   DKA+   E AL + 
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELA 212

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 17/110 (15%)

Query: 65  NNLAED----GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
             +AE      +   ++     AL++   + +   +  Q L  +   ++  K   +A   
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH 204

Query: 121 -------------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
                        ++  A + + +  +    G+   A+E F++A  +  +
Sbjct: 205 LEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 16/118 (13%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE-LEQ 122
           G      G +  A   +     L           +    E+            A +  E+
Sbjct: 73  GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 123 SW------------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
           S             A A+  LG          +A + + RA  I     E  D     
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVN 187

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 65  NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
           +NL       G+F  A   ++  L L          +AQ    LG+ +  L+   +A + 
Sbjct: 53  SNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 111

Query: 121 -EQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIK 155
             +                A  +LG A    G  D+A+   E+ L I 
Sbjct: 112 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/141 (10%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 27  QDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL 86
           +           +   + ++ Q              +G    +  ++  A+  ++ A + 
Sbjct: 73  EKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK 132

Query: 87  ------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL-------EQSWAEAWITLGR 133
                 R E A    + ++    +   + ++  A +A E+            +       
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192

Query: 134 AQLNFGEPDKAIESFERALAI 154
             L+  + + AI  F++A ++
Sbjct: 193 NFLDLKQYEDAISHFQKAYSM 213

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 20/114 (17%), Positives = 36/114 (31%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
            Q + L + G+  +AL   +   +       +   KA  LLE      A +         
Sbjct: 11  KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175
           Q  +   +               ++  E+ LA  PD+ E   +     + V R 
Sbjct: 71  QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 47  HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVL 101
           H         A +FE  G  L +  +  EA+   E A  +      P+ A +   +A  L
Sbjct: 66  HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125

Query: 102 LELGDAWNALKAATRATEL------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           +E  D   A+    +A  +       +  AE      R  +   + D+A  S ++  ++ 
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185

Query: 156 PDSEEARDDRQTALHLV 172
            + E      +  +  V
Sbjct: 186 KEMENYPTCYKKCIAQV 202

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 21/108 (19%)

Query: 73  FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN----------ALKAATRATELEQ 122
           F +     E      P +A    +   VLLEL    +          A+     A  ++ 
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77

Query: 123 SWAEAWITLGRAQLNFGEP-----------DKAIESFERALAIKPDSE 159
              EA   +G A  +F              D A + F++A+  +PD+ 
Sbjct: 78  KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 16/144 (11%)

Query: 27  QDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALN- 85
             ++   +  E+ K     + +   D  + A +   +           E L   E +   
Sbjct: 268 TTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEK 327

Query: 86  ----LRPENAVLHE---QKAQVLLELGDAWNALKAATRATELEQSW--------AEAWIT 130
                   N  +     Q   V L + D   ALK   +  +             A  W+ 
Sbjct: 328 MSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387

Query: 131 LGRAQLNFGEPDKAIESFERALAI 154
           LGR  +         ++ ++A+AI
Sbjct: 388 LGRLYMGLENKAAGEKALKKAIAI 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.95
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.92
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.9
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.89
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.87
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.86
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.85
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.85
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.85
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.85
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.83
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.83
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.82
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.82
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.82
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.81
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.8
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.8
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.78
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.77
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.73
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.73
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.72
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.71
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.7
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.7
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.7
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.69
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.68
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.67
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.66
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.64
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.63
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.61
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.58
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.57
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.46
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.42
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.36
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.35
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.33
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.26
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.26
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.17
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.06
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.03
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.98
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.92
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.67
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.6
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.51
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.5
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.48
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.46
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.3
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.02
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.98
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.87
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.52
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.52
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.44
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.29
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.27
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.72
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	96.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.58
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.53
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.4
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.35
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.98
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.94
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.74
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.54
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.36
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.33
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.24
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.19
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.56
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.48
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.09
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.86
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.92
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	88.78
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	88.54
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.4
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.98
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	87.29
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	86.76
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	85.42
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	84.68
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	83.14
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	83.05
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.84
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	82.74
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.21
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.18
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.11
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	81.99
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	81.25
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	80.5

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.95  E-value=1.6e-27  Score=156.19  Aligned_cols=145  Identities=12%  Similarity=0.020  Sum_probs=132.8

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+|.++...|++++|+..+.++  ..|..+..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            4688999999999999999988  78889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES-FERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999887765 599999999999999999988876654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.95  E-value=1.3e-26  Score=156.47  Aligned_cols=161  Identities=19%  Similarity=0.136  Sum_probs=154.8

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      .++|.++...|++++|+..|+++  .+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE   88 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC
Confidence            57899999999999999999998  7899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ++.|+..+.+++.++|+++.++..+|.++..+|++++|+..|+++++++|.++.++.++|.++..+|++++|...+..+.
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877666


Q ss_pred             chh
Q 029105          187 ANR  189 (199)
Q Consensus       187 ~~~  189 (199)
                      +..
T Consensus       169 ~~~  171 (184)
T 3vtx_A          169 EKE  171 (184)
T ss_dssp             HTT
T ss_pred             hCC
Confidence            543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.94  E-value=8.1e-27  Score=186.09  Aligned_cols=161  Identities=21%  Similarity=0.214  Sum_probs=153.5

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ...++|.++...|++++|+..|+++  .+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~   90 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM   90 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3467899999999999999999999  78999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      |++++|++.|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++.+++.++..+|++++|...+..
T Consensus        91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k  170 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK  170 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876654


Q ss_pred             ccc
Q 029105          185 NDA  187 (199)
Q Consensus       185 ~~~  187 (199)
                      ..+
T Consensus       171 al~  173 (723)
T 4gyw_A          171 LVS  173 (723)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=1.8e-26  Score=160.06  Aligned_cols=156  Identities=19%  Similarity=0.099  Sum_probs=98.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc--
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL--  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--  104 (199)
                      ..+|..+...|++++|+..|+++  .+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...  
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~   88 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR   88 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence            44566666666666666666655  55666666666666666666666666666666666666666666666666666  


Q ss_pred             ---------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          105 ---------GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       105 ---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                               |++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++ +++.++.++|.++...|++
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCH
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCH
Confidence                     666666666666666666666666666666666666666666666666666 6666666666666666666


Q ss_pred             hhhhhhcccc
Q 029105          176 KHLHLSGLSN  185 (199)
Q Consensus       176 ~~a~~~~~~~  185 (199)
                      ++|...+...
T Consensus       168 ~~A~~~~~~a  177 (217)
T 2pl2_A          168 DEALAQYAKA  177 (217)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6655544433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.94  E-value=8.8e-26  Score=143.60  Aligned_cols=118  Identities=26%  Similarity=0.407  Sum_probs=115.3

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|+.+..+..+|..++..|+|++|+..|+++++++|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      |.++..+|++++|+..|+++++++|++..++..++.|+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999998774

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=5.9e-26  Score=157.47  Aligned_cols=168  Identities=21%  Similarity=0.213  Sum_probs=145.4

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc-----------ccHHHHHHHH
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-----------GKFREALGKW   80 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~   80 (199)
                      ..+...|+.+  .....+|.++...|++++|+..+.++  ..|+++.++..+|.++...           |++++|+..|
T Consensus        30 ~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~  107 (217)
T 2pl2_A           30 RALKENPQDP--EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL  107 (217)
T ss_dssp             HHHTTSSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence            3455556543  34467899999999999999999998  7899999999999999999           9999999999


Q ss_pred             HHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105           81 EAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus        81 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      +++++++|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhccc
Q 029105          161 ARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       161 ~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ++..++.++...|++++|...+..
T Consensus       187 ~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          187 LRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999998775543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.92  E-value=2.3e-24  Score=150.19  Aligned_cols=150  Identities=13%  Similarity=0.071  Sum_probs=141.5

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      ......|..++..|++++|+..|.++  ..| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            34467899999999999999999988  455 677888889999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHh
Q 029105          103 ELGDAWNALKAATRATELEQSWA-------EAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARDDRQTALHLVK  173 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~  173 (199)
                      .+|++++|+..+++++.++|+++       .++..+|.++...|++++|+..|+++++++|+  ++.++.++|.++...|
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999998       66999999999999999999999999999999  9999999999999999


Q ss_pred             hh
Q 029105          174 RR  175 (199)
Q Consensus       174 ~~  175 (199)
                      +.
T Consensus       168 ~~  169 (228)
T 4i17_A          168 AD  169 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.92  E-value=9.5e-25  Score=162.93  Aligned_cols=150  Identities=11%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK-FREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ..+|.++...|++++|+..+.++  .+|.+..+++.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|
T Consensus       101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g  180 (382)
T 2h6f_A          101 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR  180 (382)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence            56789999999999999999998  889999999999999999997 999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-Hhhhhhh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL-VKRRKHL  178 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~a  178 (199)
                      ++++|+..|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|.++|.++.. .|..++|
T Consensus       181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999 4544666

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.92  E-value=1.6e-23  Score=136.93  Aligned_cols=126  Identities=14%  Similarity=0.038  Sum_probs=115.1

Q ss_pred             hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105           34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (199)
                      ++...+++-.+-..+.++  .+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|.++|.++...|++++|+
T Consensus        11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai   90 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA   90 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence            334444444455556655  789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105          112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      ..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|+.+
T Consensus        91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999999999865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.4e-23  Score=167.53  Aligned_cols=137  Identities=22%  Similarity=0.242  Sum_probs=131.0

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      |.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|...+..+.+.
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887766553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.91  E-value=3.3e-23  Score=152.53  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=140.5

Q ss_pred             hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQ   99 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~   99 (199)
                      ..+++++|+..+..+  ..|..+.++..+|.+++..|++++|+..|++++.++|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            567788888888887  688899999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      ++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|+++++.
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hhccccc
Q 029105          180 LSGLSND  186 (199)
Q Consensus       180 ~~~~~~~  186 (199)
                      ...+..+
T Consensus       285 ~~~~~~~  291 (336)
T 1p5q_A          285 KKLYANM  291 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.90  E-value=1.3e-22  Score=136.07  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=151.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   91 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK   91 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999988  6677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+....
T Consensus        92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988766554


Q ss_pred             ch
Q 029105          187 AN  188 (199)
Q Consensus       187 ~~  188 (199)
                      +.
T Consensus       172 ~~  173 (186)
T 3as5_A          172 EL  173 (186)
T ss_dssp             HH
T ss_pred             Hc
Confidence            43

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=9.2e-23  Score=142.79  Aligned_cols=154  Identities=17%  Similarity=0.132  Sum_probs=85.5

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  106 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM  106 (243)
T ss_dssp             ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence            34456666666666666666555  4455555666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+
T Consensus       107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.90  E-value=1e-23  Score=138.01  Aligned_cols=122  Identities=12%  Similarity=0.021  Sum_probs=113.1

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP  141 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  141 (199)
                      .+|.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+..|+++++++|+++.+|+.+|.++..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      ++|+..|+++++++|+++.++.++|.++...|+++++...++
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~  123 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV  123 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            999999999999999999999999999999999988776553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.90  E-value=1.6e-22  Score=132.04  Aligned_cols=124  Identities=10%  Similarity=0.030  Sum_probs=114.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|.++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      |.++..+|++++|+..|++++.++|+++........+...+...
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999877655555555544443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.3e-22  Score=143.10  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=150.8

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhH-------HHHHHHHhhHHHhcccHHHHHHHHHHHHc-----------
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL-------ALSFEAQGNNLAEDGKFREALGKWEAALN-----------   85 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----------   85 (199)
                      .....+|.++...|++++|+..+.++  ..|..       +.++..+|.++...|++++|+..|++++.           
T Consensus        39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  118 (258)
T 3uq3_A           39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL  118 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence            44567899999999999999999988  34443       78999999999999999999999999999           


Q ss_pred             ---------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105           86 ---------------LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus        86 ---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                                     .+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                           77778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          151 ALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       151 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      ++..+|+++.++..+|.++...|++++|...+....+..
T Consensus       199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999988776665544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=2.5e-23  Score=159.70  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENAVLHEQK   97 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~l   97 (199)
                      ..+|.++...|++++|+..|.++  ..|+ ..++..+|.++...         |++++|+..|+++++++|+++.++.++
T Consensus       141 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  219 (474)
T 4abn_A          141 NQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL  219 (474)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45566666666666666666665  4444 46666666666666         666666666666666666666666666


Q ss_pred             HHHHHHc--------CCHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105           98 AQVLLEL--------GDAWNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus        98 a~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      |.++...        |++++|+..|++++.++|   +++.+++++|.++..+|++++|+..|+++++++|+++.++..++
T Consensus       220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            6666666        666666666666666666   66666666676666667777777777766666666666666666


Q ss_pred             HHHHHHhhhhhhhhhc
Q 029105          167 TALHLVKRRKHLHLSG  182 (199)
Q Consensus       167 ~~~~~~~~~~~a~~~~  182 (199)
                      .++..+|++++|....
T Consensus       300 ~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          300 QLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6666666666666544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=1.8e-22  Score=155.03  Aligned_cols=161  Identities=15%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             hHhhhcchhhhhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      ...+.+|.++...|++ ++|+..|.++  .+|.++.++..+|.++...|++++|+.+|+++++++|+ ..++.++|.++.
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~  181 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence            4447789999999999 9999999998  78889999999999999999999999999999999999 799999999999


Q ss_pred             Hc---------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc--------CChHHHHHHHHHHHhcCC---CcHHHH
Q 029105          103 EL---------GDAWNALKAATRATELEQSWAEAWITLGRAQLNF--------GEPDKAIESFERALAIKP---DSEEAR  162 (199)
Q Consensus       103 ~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~  162 (199)
                      ..         |++++|+..++++++++|+++.+|+.+|.++..+        |++++|+..|++++.++|   .++.++
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence            99         9999999999999999999999999999999999        999999999999999999   999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccc
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      .++|.++..+|++++|...+..+.+
T Consensus       262 ~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          262 LNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999887766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=3e-22  Score=149.47  Aligned_cols=154  Identities=12%  Similarity=0.026  Sum_probs=139.1

Q ss_pred             hhhhccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           34 SGAELEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      .+.....|.+....+...         ..|.++.++..+|.++...|++++|+..|++++.++|++..+|+++|.++..+
T Consensus        65 ~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~  144 (382)
T 2h6f_A           65 LYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL  144 (382)
T ss_dssp             CGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence            344444555554444331         78899999999999999999999999999999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          105 GD-AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       105 ~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      |+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|++..+|.++|.++..+|++++|...+.
T Consensus       145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~  224 (382)
T 2h6f_A          145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD  224 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            97 99999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             cccc
Q 029105          184 SNDA  187 (199)
Q Consensus       184 ~~~~  187 (199)
                      .+.+
T Consensus       225 ~al~  228 (382)
T 2h6f_A          225 QLLK  228 (382)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.2e-22  Score=125.28  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      |..+..+..+|..++..|++++|+..|++++.++|+++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Q 029105          134 AQLNFGEPDKAIESFERALAIK------PDSEEARDDRQTALHL  171 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  171 (199)
                      ++..+|++++|+..|++++.++      |.+..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      9999999998887754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=3.4e-22  Score=139.92  Aligned_cols=161  Identities=19%  Similarity=0.124  Sum_probs=151.6

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ....+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            3456799999999999999999988  66778899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      |++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..++.++...|++++|...+..
T Consensus       139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876655


Q ss_pred             ccc
Q 029105          185 NDA  187 (199)
Q Consensus       185 ~~~  187 (199)
                      ..+
T Consensus       219 ~~~  221 (243)
T 2q7f_A          219 AID  221 (243)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.89  E-value=1.4e-22  Score=139.49  Aligned_cols=160  Identities=14%  Similarity=0.016  Sum_probs=136.2

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHH----------------HhhHHHhcccHHHHHHHHHHHHccCCC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEA----------------QGNNLAEDGKFREALGKWEAALNLRPE   89 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~~~~~   89 (199)
                      ....|..++..|++++|+..|.++  .+|+++.+++.                +|.++...|++++|+..|+++++++|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999998  78999999999                999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE--PDKAIESFERALAIKPDSEEARDDRQT  167 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~  167 (199)
                      ++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+...+.+++...|. ..+++.+|.
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~  165 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL  165 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence            999999999999999999999999999999999999999999999977764  45567777776543332 346777888


Q ss_pred             HHHHHhhhhhhhhhcccccch
Q 029105          168 ALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       168 ~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++...|++++|...+..+.+.
T Consensus       166 ~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          166 SKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888899998888776655543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.89  E-value=1.1e-21  Score=133.94  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=129.3

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH----------------H
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA----------------V   92 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~   92 (199)
                      .+......|+++++.+.+...  ..+..+..+..+|..++..|++++|+..|++++.+.|.++                .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            345566678889998888776  5667888999999999999999999999999999999887                8


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ++.++|.++...|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..+
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccc
Q 029105          173 KRRKHLHLSGLSN  185 (199)
Q Consensus       173 ~~~~~a~~~~~~~  185 (199)
                      ++..++....+..
T Consensus       170 ~~~~~~~~~~~~~  182 (198)
T 2fbn_A          170 KEARKKDKLTFGG  182 (198)
T ss_dssp             HHHHC--------
T ss_pred             HHHHHHHHHHHHH
Confidence            9998877544433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=1.4e-22  Score=144.01  Aligned_cols=162  Identities=12%  Similarity=-0.005  Sum_probs=144.6

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK   97 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l   97 (199)
                      ...+..|..++..|++++|+..|.++  ..|.+   +.+++.+|.+++..|++++|+..|++++...|++   +.+++.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            44578899999999999999999988  45555   8999999999999999999999999999998854   6789999


Q ss_pred             HHHHHH--------cCCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 029105           98 AQVLLE--------LGDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        98 a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      |.++..        .|++++|+..|++++..+|+++.+.                 +.+|.+|...|++++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        9999999999999999999876655                 889999999999999999999999


Q ss_pred             hcCCC---cHHHHHHHHHHHHHH----------hhhhhhhhhcccccc
Q 029105          153 AIKPD---SEEARDDRQTALHLV----------KRRKHLHLSGLSNDA  187 (199)
Q Consensus       153 ~~~p~---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~  187 (199)
                      ...|+   .+.++..+|.++..+          |++++|...+....+
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            99998   567999999999988          888888776655443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.89  E-value=8.3e-22  Score=127.68  Aligned_cols=126  Identities=17%  Similarity=0.082  Sum_probs=117.1

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+|.+...++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      |.++..+|++++|+..|++++.++|+++........+...++...+
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988777666666666555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.89  E-value=3.9e-22  Score=152.40  Aligned_cols=151  Identities=19%  Similarity=0.185  Sum_probs=136.1

Q ss_pred             hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQ   99 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~   99 (199)
                      ..+++++|+..+...  ..|..+..+..+|.+++..|++++|+..|++++.++|.+               ..++.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            556778888888777  678889999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      |+..+|++++|+..|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhcccccc
Q 029105          180 LSGLSNDA  187 (199)
Q Consensus       180 ~~~~~~~~  187 (199)
                      ...++.+.
T Consensus       406 ~~~~~~~f  413 (457)
T 1kt0_A          406 RRIYANMF  413 (457)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            76555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.89  E-value=3.2e-22  Score=149.54  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=101.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus       207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  286 (388)
T 1w3b_A          207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence            34455555555555555555555  4555566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|...+...
T Consensus       287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666554433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=3.6e-22  Score=148.06  Aligned_cols=158  Identities=18%  Similarity=0.096  Sum_probs=120.3

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ...+|..+...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            456788888888888888888887  567778888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHhhcccc----------------------------------------------cHHHHHHHHHHHHhcC
Q 029105          106 DAWNALKAATRATELEQS----------------------------------------------WAEAWITLGRAQLNFG  139 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~----------------------------------------------~~~~~~~lg~~~~~~~  139 (199)
                      ++++|+..+++++.++|+                                              ++.++..+|.++...|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            877777777777666554                                              4566667777777777


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|+..|++++..+|+++.++..+|.++...|++++|...+...
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777766655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=6.8e-22  Score=136.63  Aligned_cols=158  Identities=12%  Similarity=0.035  Sum_probs=130.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-C
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL-G  105 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~  105 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++... |
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~   91 (225)
T 2vq2_A           12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN   91 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence            45678888888888888888877  56667778888888888888888888888888888888888888888888888 8


Q ss_pred             CHHHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          106 DAWNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       106 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      ++++|+..+++++.  .+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+.
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  171 (225)
T 2vq2_A           92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK  171 (225)
T ss_dssp             CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888  6667778888888888888888888888888888888888888888888888888888776554


Q ss_pred             ccc
Q 029105          184 SND  186 (199)
Q Consensus       184 ~~~  186 (199)
                      ...
T Consensus       172 ~~~  174 (225)
T 2vq2_A          172 KYQ  174 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=8.9e-22  Score=138.72  Aligned_cols=157  Identities=15%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  120 (252)
T 2ho1_A           41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR  120 (252)
T ss_dssp             HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence            56688888999999999998887  5677788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          107 AWNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       107 ~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      +++|+..+++++.  ..|.++.++..+|.++...|++++|+..|++++...|.++.++..++.++...|++++|...+..
T Consensus       121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  200 (252)
T 2ho1_A          121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL  200 (252)
T ss_dssp             HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999998  78888889999999999999999999999999999999999999999999999999888776554


Q ss_pred             c
Q 029105          185 N  185 (199)
Q Consensus       185 ~  185 (199)
                      .
T Consensus       201 ~  201 (252)
T 2ho1_A          201 F  201 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.88  E-value=2.3e-22  Score=134.93  Aligned_cols=160  Identities=11%  Similarity=-0.018  Sum_probs=142.1

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-Hc
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL-EL  104 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~  104 (199)
                      ...+|..+...|++++|+..|+++  .+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence            356789999999999999999998  7899999999999999999999999999999999999 8877766665533 33


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..++.++..+|+.++|...+
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            445568999999999999999999999999999999999999999999999976  669999999999999999998877


Q ss_pred             ccccch
Q 029105          183 LSNDAN  188 (199)
Q Consensus       183 ~~~~~~  188 (199)
                      .+.+..
T Consensus       168 ~~al~~  173 (176)
T 2r5s_A          168 RRQLYS  173 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=6.1e-22  Score=148.01  Aligned_cols=153  Identities=20%  Similarity=0.141  Sum_probs=89.4

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            4455555556666666655555  44555555666666666666666666666666666665555555555555555555


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|...+
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555555555555555555555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=3.9e-22  Score=138.91  Aligned_cols=145  Identities=16%  Similarity=0.218  Sum_probs=136.3

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-------HHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-------VLHEQ   96 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~   96 (199)
                      ...+.+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|++++.++|+++       .++..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  122 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK  122 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            34466899999999999999999998  8899999999999999999999999999999999999998       66999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCCh---------------------------HHHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEP---------------------------DKAIES  147 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~---------------------------~~A~~~  147 (199)
                      +|.++...|++++|+..|+++++++|+  ++.+++.+|.++...|+.                           ++|+..
T Consensus       123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~  202 (228)
T 4i17_A          123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDY  202 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  999999999999999988                           999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHH
Q 029105          148 FERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       148 ~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      |+++++++|+++.+...++.+..
T Consensus       203 ~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          203 LGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHH
Confidence            99999999999999888887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=2.1e-22  Score=149.28  Aligned_cols=162  Identities=15%  Similarity=0.091  Sum_probs=131.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHH-----------------------
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAA-----------------------   83 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-----------------------   83 (199)
                      ..+|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|+++                       
T Consensus       103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  182 (365)
T 4eqf_A          103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR  182 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence            45566666666666666666655  44555555666666555555555555555554                       


Q ss_pred             ---------------------HccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105           84 ---------------------LNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE  140 (199)
Q Consensus        84 ---------------------l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  140 (199)
                                           +..+|.  ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                 445565  788999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105          141 PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRF  190 (199)
Q Consensus       141 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  190 (199)
                      +++|+..|++++.++|+++.++..+|.++...|++++|...+..+.+...
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999987776665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=1.9e-21  Score=131.07  Aligned_cols=133  Identities=17%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      +++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +...++++.|+..+.+++..+|.+..++..+|.++..+|++++|...+....+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~  135 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS  135 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887765544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.88  E-value=2.5e-21  Score=133.31  Aligned_cols=121  Identities=12%  Similarity=0.041  Sum_probs=115.5

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhh
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ----------------KAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      .+..+...|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999                99999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105          120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK  176 (199)
Q Consensus       120 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  176 (199)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|+.+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999999999999998877543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.87  E-value=2.5e-21  Score=128.11  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=118.8

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL------------------RPENAVLHEQKAQVLLELGDAWNALKAATR  116 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (199)
                      ..+..+...|..++..|+|++|+..|.+++.+                  +|.+..++.++|.++..+|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35778999999999999999999999999999                  777789999999999999999999999999


Q ss_pred             HhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-EARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       117 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++..+..+..++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~  157 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYS  157 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC---
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 7788999999888887776554433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.87  E-value=1.3e-21  Score=136.26  Aligned_cols=157  Identities=8%  Similarity=-0.039  Sum_probs=139.8

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKA   98 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la   98 (199)
                      ..+.+|..++..|++++|+..|.++  .   .|....+++.+|.+++..|++++|+..|+++++.+|+++   .+++.+|
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            3467799999999999999999988  2   334568999999999999999999999999999999986   4789999


Q ss_pred             HHHHH------------------cCCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHH
Q 029105           99 QVLLE------------------LGDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDK  143 (199)
Q Consensus        99 ~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~  143 (199)
                      .++..                  .|++++|+..|++++..+|+++.++                 +.+|.++...|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            99886                  5789999999999999999876544                 678999999999999


Q ss_pred             HHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          144 AIESFERALAIKPDSE---EARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       144 A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      |+..|+++++..|+++   .++..++.++..+|++++|.....
T Consensus       166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            9999999999999986   679999999999999999887553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=7.4e-22  Score=146.19  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=146.2

Q ss_pred             hcchhhhhccchhhhhhccccc--chhh--HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQ--LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      .+|..+ ..|++++|+..+.++  ..|.  .+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            345555 899999999999988  6666  78899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-----------HHHHHHHHHHHHHHhh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-----------EEARDDRQTALHLVKR  174 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~  174 (199)
                      ++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.+.|++           ..++..++.++..+|+
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999988           8999999999999999


Q ss_pred             hhhhhhhcccccc
Q 029105          175 RKHLHLSGLSNDA  187 (199)
Q Consensus       175 ~~~a~~~~~~~~~  187 (199)
                      +++|........+
T Consensus       346 ~~~A~~~~~~~l~  358 (368)
T 1fch_A          346 SDAYGAADARDLS  358 (368)
T ss_dssp             GGGHHHHHTTCHH
T ss_pred             hHhHHHhHHHHHH
Confidence            9999887665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.6e-22  Score=139.10  Aligned_cols=159  Identities=13%  Similarity=0.111  Sum_probs=147.3

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKA   98 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la   98 (199)
                      ...+|..+...|++++|+..|.++  .. .++.++..+|.++...|++++|+..+++++...|.+       +.++..+|
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~   86 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG   86 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence            356799999999999999999988  33 678899999999999999999999999999998877       79999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhh--------------------------cccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105           99 QVLLELGDAWNALKAATRATE--------------------------LEQSWAEAWITLGRAQLNFGEPDKAIESFERAL  152 (199)
Q Consensus        99 ~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  152 (199)
                      .++...|++++|+..+++++.                          .+|.++.++..+|.++...|++++|+..|++++
T Consensus        87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  166 (258)
T 3uq3_A           87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI  166 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999999                          788889999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          153 AIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       153 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ..+|.++.++..+|.++...|++++|...+....+
T Consensus       167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999887655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=140.94  Aligned_cols=171  Identities=15%  Similarity=0.033  Sum_probs=141.1

Q ss_pred             ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .+...|..+  .....+|.++...|++++|+..+.++  ..|....++..+|.++...|++++|+..+++++..+|.++.
T Consensus       117 a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          117 ATTLEKTYG--PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             HHTTCTTCT--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHhCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence            334444433  33456788888888888888888877  55666777888888898999999999999999999998888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcc---------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELE---------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      ++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|++++|+..|++++..+|+++.++.
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  274 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS  274 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHH
Confidence            89999999999999999999999998876         666778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhcccccc
Q 029105          164 DRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      .+|.++...|++++|...+....+
T Consensus       275 ~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          275 AIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHc
Confidence            999999999999988877665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.87  E-value=5.8e-21  Score=126.56  Aligned_cols=124  Identities=18%  Similarity=0.320  Sum_probs=113.2

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .+..+..++.+|.+++..|++++|+..|++++.++|+++.++.++|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHHhhhh
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT--ALHLVKRRK  176 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~  176 (199)
                      .++..+|++++|+.+|++++.++|++..++...+.  +...+++..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886555554  444444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=5e-21  Score=141.75  Aligned_cols=169  Identities=17%  Similarity=0.095  Sum_probs=123.5

Q ss_pred             ccCCCCCC--chHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           17 QQFPNLPF--DQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        17 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      ...|+.|.  ......+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|++++..+|+++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  133 (368)
T 1fch_A           54 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT  133 (368)
T ss_dssp             CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence            34444442  233456788888888998888888887  67777888888888888888888888888888888888887


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhccc-------------------------------------------------c
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQ-------------------------------------------------S  123 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------------------------------~  123 (199)
                      ++..+|.++...|++++|+..+++++..+|                                                 +
T Consensus       134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  213 (368)
T 1fch_A          134 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT  213 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence            777777777777777777666666555433                                                 3


Q ss_pred             --cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          124 --WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       124 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                        ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|...+...
T Consensus       214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  277 (368)
T 1fch_A          214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA  277 (368)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              45666777777777777777777777777777777777777777777777777766655443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.87  E-value=1.7e-22  Score=132.06  Aligned_cols=120  Identities=7%  Similarity=-0.195  Sum_probs=109.8

Q ss_pred             hcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105           69 EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus        69 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      ..+++-.+-..+++++.++|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|
T Consensus        14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            33444445566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          149 ERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       149 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++++.++|+++.++.++|.++..+|++++|...+..+.+.
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999877666543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.2e-21  Score=140.50  Aligned_cols=158  Identities=16%  Similarity=-0.001  Sum_probs=134.5

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      ++.++...|++++|+..+.++  ..|.++.++..+|.++...| ++++|+..|++++..+|.++.++..+|.++...|++
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  141 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH  141 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence            456667777777777777766  56777888888899999888 889999999999999998888899999999999999


Q ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++|+..+++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|...+.....
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99999999999998888888888999999999999999999999999999999999999999999999888876665554


Q ss_pred             h
Q 029105          188 N  188 (199)
Q Consensus       188 ~  188 (199)
                      .
T Consensus       222 ~  222 (330)
T 3hym_B          222 K  222 (330)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.87  E-value=4.5e-21  Score=135.11  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=149.8

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN--LRPENAVLHEQKAQVLL  102 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~  102 (199)
                      ....+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++.
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            3456799999999999999999988  6677889999999999999999999999999999  88999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|...+
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  232 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG  232 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             cccc
Q 029105          183 LSND  186 (199)
Q Consensus       183 ~~~~  186 (199)
                      ....
T Consensus       233 ~~~~  236 (252)
T 2ho1_A          233 LQLK  236 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=3.1e-21  Score=139.31  Aligned_cols=153  Identities=7%  Similarity=-0.124  Sum_probs=136.5

Q ss_pred             HhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH--HHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA--QVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--~~~~~~  104 (199)
                      ....+|.++...|++++|+..+.+   |.++.++..+|.++...|++++|+..+++++..+|++.......+  .++...
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~  179 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG  179 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc
Confidence            346779999999999999999988   778889999999999999999999999999999999865444333  333445


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++.+++.++...|+..++...+
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998754333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.87  E-value=2.4e-20  Score=118.16  Aligned_cols=124  Identities=22%  Similarity=0.352  Sum_probs=120.0

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..|..+..+..+|.+++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      |.++...|++++|+..|++++..+|+++.++..++.++..+|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=3.5e-21  Score=141.62  Aligned_cols=161  Identities=18%  Similarity=0.067  Sum_probs=127.1

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC---CcHHHHHHH----
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP---ENAVLHEQK----   97 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l----   97 (199)
                      ....+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|++++..+|   ++..++..+    
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  118 (359)
T 3ieg_A           39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD  118 (359)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence            3356677888888888888887777  5666777788888888888888888888888888888   777777666    


Q ss_pred             --------HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105           98 --------AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus        98 --------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                              |.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus       119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                    677788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhhhhhhhhhcccccc
Q 029105          170 HLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       170 ~~~~~~~~a~~~~~~~~~  187 (199)
                      ...|++++|...+....+
T Consensus       199 ~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          199 YQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHh
Confidence            888888887776554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.87  E-value=1.5e-20  Score=119.46  Aligned_cols=112  Identities=22%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------HH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AE  126 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  126 (199)
                      ++.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999998875       35


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      ++.++|.++..+|++++|+..|++++...|+ ++....+.
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            7899999999999999999999999999886 55444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.87  E-value=4.4e-21  Score=150.29  Aligned_cols=150  Identities=12%  Similarity=0.031  Sum_probs=118.7

Q ss_pred             ccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029105           38 LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT  115 (199)
Q Consensus        38 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  115 (199)
                      .|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            36788888888887  6778888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---hhhhhhhhhcccccc
Q 029105          116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV---KRRKHLHLSGLSNDA  187 (199)
Q Consensus       116 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  187 (199)
                      ++++++|+++.+++.+|.++..+|++++|+..|+++++.+|+++.++.+++.++..+   |++++|...+....+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999   888888776654443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.87  E-value=2.5e-22  Score=160.26  Aligned_cols=147  Identities=12%  Similarity=-0.016  Sum_probs=135.2

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ....+|.++...|++++|+..+.++  .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~  514 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA  514 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            3466789999999999999999988  78889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      |++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++.+++.++...+.
T Consensus       515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99999 9999999999999999999999999999999999999999999999999999999999877554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=6.1e-21  Score=135.50  Aligned_cols=167  Identities=13%  Similarity=0.034  Sum_probs=146.3

Q ss_pred             cccccCCCCCCc-hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHh--------cccHHHHHHH
Q 029105           14 RSLQQFPNLPFD-QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAE--------DGKFREALGK   79 (199)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~   79 (199)
                      .++...|+.+.. ...+.+|.+++..|++++|+..|.++     .+|..+.+++.+|.+++.        .|++++|+..
T Consensus        40 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           40 AVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            466677776653 34478899999999999999999988     244678899999999999        9999999999


Q ss_pred             HHHHHccCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhc-
Q 029105           80 WEAALNLRPENAVLH-----------------EQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNF-  138 (199)
Q Consensus        80 ~~~~l~~~~~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~-  138 (199)
                      |++++..+|+++.+.                 +.+|.++...|++++|+..|++++...|+   .+.+++.+|.++..+ 
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            999999999986555                 88899999999999999999999999998   678999999999977 


Q ss_pred             ---------CChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhhhhh
Q 029105          139 ---------GEPDKAIESFERALAIKPDSE---EARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       139 ---------~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~  180 (199)
                               |++++|+..|++++...|+++   .+...++.++..+++++++..
T Consensus       200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~  253 (261)
T 3qky_A          200 EQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS  253 (261)
T ss_dssp             HTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence                     899999999999999999985   567788888888888877543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=5e-21  Score=139.32  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=148.5

Q ss_pred             hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105           34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (199)
                      ++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            588899999999999988  667788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHhhhhhhh
Q 029105          112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------------SEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      ..+++++..+|+++.++..+|.++...|++++|+..|++++...|.            ++.++..++.++..+|++++|.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999            8999999999999999999999


Q ss_pred             hhcccccchhhh
Q 029105          180 LSGLSNDANRFV  191 (199)
Q Consensus       180 ~~~~~~~~~~~~  191 (199)
                      .......+....
T Consensus       307 ~~~~~~l~~~~~  318 (327)
T 3cv0_A          307 LTYAQNVEPFAK  318 (327)
T ss_dssp             HHTTCCSHHHHH
T ss_pred             HHHHHHHHhcch
Confidence            887766655433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.86  E-value=1.2e-21  Score=141.27  Aligned_cols=159  Identities=10%  Similarity=-0.063  Sum_probs=145.5

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..|+++  .+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus       121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~  200 (287)
T 3qou_A          121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA  200 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence            56788889999999999999988  7888899999999999999999999999999999999877777888888888999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      .++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++..+|+.++|...+.+
T Consensus       201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998  88999999999999999998887765


Q ss_pred             ccc
Q 029105          185 NDA  187 (199)
Q Consensus       185 ~~~  187 (199)
                      ++.
T Consensus       281 al~  283 (287)
T 3qou_A          281 QLY  283 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-20  Score=119.55  Aligned_cols=123  Identities=22%  Similarity=0.329  Sum_probs=118.0

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      ..|..+.+++.+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      |.++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999987763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=1.1e-21  Score=156.54  Aligned_cols=151  Identities=13%  Similarity=-0.069  Sum_probs=142.5

Q ss_pred             hhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           36 AELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ...|++++|+..+.++          .+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            6788999999888765          358888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|+++.++.++|.++..+|++++|...+..+
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 99999999999999999999999999999999998877665


Q ss_pred             cc
Q 029105          186 DA  187 (199)
Q Consensus       186 ~~  187 (199)
                      .+
T Consensus       561 l~  562 (681)
T 2pzi_A          561 PP  562 (681)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1e-20  Score=139.09  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=149.0

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..++..|++++|+..|.++  ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus         7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A            7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK   86 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence            56789999999999999999988  7788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccc---ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          107 AWNALKAATRATELEQ---SWAEAWITL------------GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p---~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      +++|+..+++++..+|   +++.++..+            |.++...|++++|+..+++++..+|.++.++..++.++..
T Consensus        87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK  166 (359)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999   888888877            7899999999999999999999999999999999999999


Q ss_pred             Hhhhhhhhhhcccccc
Q 029105          172 VKRRKHLHLSGLSNDA  187 (199)
Q Consensus       172 ~~~~~~a~~~~~~~~~  187 (199)
                      .|++++|...+....+
T Consensus       167 ~~~~~~A~~~~~~~~~  182 (359)
T 3ieg_A          167 EGEPRKAISDLKAASK  182 (359)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999876655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=1.6e-21  Score=138.85  Aligned_cols=174  Identities=18%  Similarity=0.092  Sum_probs=147.3

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc-chh---h-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF-DAK---Q-LALSFEAQGNNLAEDGKFREALGKWEAALNLRP   88 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~   88 (199)
                      ..+...|+.+.  ....+|.++...|++++|+..+.++ ..|   . .+.++..+|.++...|++++|+..|++++..+|
T Consensus        28 ~~l~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~  105 (272)
T 3u4t_A           28 KLEAKKYNSPY--IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT  105 (272)
T ss_dssp             HHHHTTCCCST--THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHhCCCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            34555665443  3456788999999999999998887 222   2 255689999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105           89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      .++.++..+|.++...|++++|+..+++++..+|.++.+++.+|......+++++|+..|+++++.+|++..++..++.+
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  185 (272)
T 3u4t_A          106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA  185 (272)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999444445699999999999999999999999999999


Q ss_pred             HHHHhh---hhhhhhhcccccchh
Q 029105          169 LHLVKR---RKHLHLSGLSNDANR  189 (199)
Q Consensus       169 ~~~~~~---~~~a~~~~~~~~~~~  189 (199)
                      +..+++   +++|...+....+..
T Consensus       186 ~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          186 NAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHcCcchhhHHHHHHHHHHHHHH
Confidence            999998   777887766665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.86  E-value=2.4e-20  Score=132.76  Aligned_cols=154  Identities=15%  Similarity=0.028  Sum_probs=138.1

Q ss_pred             cchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           31 HGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ++......|++++|+..+.++      ..|..+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            455566678999999998877      25788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      |++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.++|++......++.+ ...|++++|...+..
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998776666644 666888888776543


Q ss_pred             c
Q 029105          185 N  185 (199)
Q Consensus       185 ~  185 (199)
                      .
T Consensus       170 ~  170 (275)
T 1xnf_A          170 H  170 (275)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.85  E-value=4.6e-21  Score=136.45  Aligned_cols=158  Identities=12%  Similarity=0.022  Sum_probs=141.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLL  102 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~  102 (199)
                      ...|..++..|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.++.
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence            56789999999999999999998  7788888999999999999999999999999999 4444    345899999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|......+++++|...+
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999994444455888887765


Q ss_pred             ccccc
Q 029105          183 LSNDA  187 (199)
Q Consensus       183 ~~~~~  187 (199)
                      ....+
T Consensus       166 ~~a~~  170 (272)
T 3u4t_A          166 VKVLE  170 (272)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.85  E-value=2.5e-20  Score=128.74  Aligned_cols=157  Identities=13%  Similarity=-0.013  Sum_probs=145.5

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHc--cCCCcHHHHHHHHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-GKFREALGKWEAALN--LRPENAVLHEQKAQVL  101 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~  101 (199)
                      ....+|.++...|++++|+..+.++  ..|.++.++..+|.++... |++++|+..+++++.  ..|.+..++..+|.++
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            3456799999999999999999988  6677888999999999999 999999999999999  6777789999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP-DSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...| .++..+..++.++...|+.+++..
T Consensus       124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999888765


Q ss_pred             hcc
Q 029105          181 SGL  183 (199)
Q Consensus       181 ~~~  183 (199)
                      ...
T Consensus       204 ~~~  206 (225)
T 2vq2_A          204 YEA  206 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.85  E-value=4.8e-21  Score=124.34  Aligned_cols=118  Identities=16%  Similarity=0.222  Sum_probs=107.8

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc---
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NA-----VLHEQKAQVLLELGDAWNALKAATRATEL---  120 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~---  120 (199)
                      .+..+..+|..++..|+|++|+..|+++++++|+       +.     .+|.++|.++..+|+|++|+.++++++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            5677899999999999999999999999999999       43     39999999999999999999999999999   


Q ss_pred             ----ccccHHHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          121 ----EQSWAEAW----ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       121 ----~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                          +|+++.+|    +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                99999999    999999999999999999999999999998777666666655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.85  E-value=1.8e-19  Score=119.01  Aligned_cols=131  Identities=20%  Similarity=0.294  Sum_probs=121.3

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      ..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHhhhhhhhhhcccc
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTA--LHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~  185 (199)
                      +..+|++++|+.+|++++..+|.+..++..++.+  +...|++++|.......
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            9999999999999999999999999988555555  88889999988765433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.85  E-value=4.6e-21  Score=121.72  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=104.2

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ...++|..++..|+|++|+..|.++  .+|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            3457899999999999999999998  78999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      |++++|+..|+++++++|+++.++..++.|+
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999998874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.85  E-value=2.2e-20  Score=134.96  Aligned_cols=157  Identities=8%  Similarity=-0.037  Sum_probs=137.7

Q ss_pred             cchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQ   96 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~   96 (199)
                      .|.++...|++++|+..|.++        ..+..+.++..+|.++...|++++|+.+|++++.+.|..      ..++.+
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            377888899999999999887        123457899999999999999999999999999987653      468999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-------HH
Q 029105           97 KAQVLLEL-GDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-------AR  162 (199)
Q Consensus        97 la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~  162 (199)
                      +|.++... |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+..|++++.+.|++..       ++
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999996 99999999999999998864      567899999999999999999999999999987643       67


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccc
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      .++|.++..+|++++|...+....+
T Consensus       203 ~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          203 LKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8999999999999999887766554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.85  E-value=3.2e-20  Score=119.08  Aligned_cols=125  Identities=25%  Similarity=0.288  Sum_probs=115.6

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .|..+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHhhhhh
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPD-----SEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~  177 (199)
                      .++..+|++++|+..|++++.++|+     +..+...+..+........+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988     77888888887776655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.85  E-value=3.5e-20  Score=127.47  Aligned_cols=137  Identities=15%  Similarity=0.022  Sum_probs=124.9

Q ss_pred             hhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+.+|..+...|++++|+..|.++..| ++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence            367799999999999999999998654 5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105          108 WNALKAATRATELEQSWA----------------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      ++|+..+++++...|.+.                .+++.+|.++..+|++++|+..|++++.++|++.......
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  161 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK  161 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence            999999999999766554                9999999999999999999999999999999875543333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=2.6e-20  Score=141.42  Aligned_cols=158  Identities=15%  Similarity=0.088  Sum_probs=133.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            56688889999999999998887  5677888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          107 AWNALKAATRATELEQSWA---EAWITL------------GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      +++|+..|++++..+|+++   .++..+            |.++...|++++|+..|++++...|.++.++..++.++..
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  189 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK  189 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999888877   665544            6668888888888888888888888888888888888888


Q ss_pred             Hhhhhhhhhhccccc
Q 029105          172 VKRRKHLHLSGLSND  186 (199)
Q Consensus       172 ~~~~~~a~~~~~~~~  186 (199)
                      .|++++|...+....
T Consensus       190 ~g~~~~A~~~~~~~~  204 (450)
T 2y4t_A          190 EGEPRKAISDLKAAS  204 (450)
T ss_dssp             TTCGGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            888888776655443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.84  E-value=1.9e-20  Score=125.42  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=120.2

Q ss_pred             chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHcCCH-
Q 029105           32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV-LLELGDA-  107 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~~~~-  107 (199)
                      +..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++ 
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            34466788999999999887  6788899999999999999999999999999999999999999999999 8899999 


Q ss_pred             -HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105          108 -WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT  167 (199)
Q Consensus       108 -~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  167 (199)
                       ++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++......+..
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence             999999999999999999999999999999999999999999999999998665544433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.84  E-value=4.5e-20  Score=140.10  Aligned_cols=160  Identities=14%  Similarity=0.056  Sum_probs=142.6

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHH--------
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK--------   97 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l--------   97 (199)
                      ...+|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++..+|++..++..+        
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            456788999999999999999888  6777888999999999999999999999999999999998877666        


Q ss_pred             ----HHHHHHcCCHHHHHHHHHHHhhcccccHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105           98 ----AQVLLELGDAWNALKAATRATELEQSWAE----AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus        98 ----a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                          |.++...|++++|+..|++++...|+++.    .+..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence                99999999999999999999999998754    7888999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhcccccc
Q 029105          170 HLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       170 ~~~~~~~~a~~~~~~~~~  187 (199)
                      ...|++++|...+....+
T Consensus       340 ~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            999999998877665544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=5.8e-19  Score=109.77  Aligned_cols=114  Identities=18%  Similarity=0.322  Sum_probs=110.0

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      .+..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      ...|++++|+..+++++..+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999888775

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=3.6e-20  Score=143.48  Aligned_cols=161  Identities=15%  Similarity=-0.008  Sum_probs=151.0

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ...+|..+...|++++|+..+.++  ..|. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ  324 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence            356688999999999999999988  5666 8899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|...+...
T Consensus       325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998877665


Q ss_pred             cchh
Q 029105          186 DANR  189 (199)
Q Consensus       186 ~~~~  189 (199)
                      .+..
T Consensus       405 ~~~~  408 (537)
T 3fp2_A          405 KRLE  408 (537)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            5543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.83  E-value=6.9e-20  Score=115.45  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      .++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..++++++++|+++.+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcHH
Q 029105          139 GEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       139 ~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      |++++|+..|+++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999998754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=1.3e-19  Score=128.91  Aligned_cols=157  Identities=13%  Similarity=-0.009  Sum_probs=124.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  126 (275)
T 1xnf_A           47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  126 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence            57799999999999999999998  6788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----------------------------
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS----------------------------  158 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------  158 (199)
                      +++|+..+++++.++|+++......+.+ ...|++++|+..+++++...|.+                            
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  205 (275)
T 1xnf_A          127 DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT  205 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence            9999999999999999876544433332 33455555555555544443322                            


Q ss_pred             ---------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          159 ---------EEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       159 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                               +.++..+|.++...|++++|...+....
T Consensus       206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  242 (275)
T 1xnf_A          206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV  242 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                     4556667777777777777666554433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=2.6e-20  Score=135.51  Aligned_cols=160  Identities=21%  Similarity=0.168  Sum_probs=130.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHH---------------------------
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGK---------------------------   79 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~---------------------------   79 (199)
                      ..+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..                           
T Consensus        59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (327)
T 3cv0_A           59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD  138 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence            45577777777777777777766  4555666666666666666655555554                           


Q ss_pred             ----------------------HHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           80 ----------------------WEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        80 ----------------------~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                                            +++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (327)
T 3cv0_A          139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN  218 (327)
T ss_dssp             -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence                                  4445555677778889999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          138 FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       138 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .|++++|+..|++++..+|+++.++..++.++...|++++|...+......
T Consensus       219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998776555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.83  E-value=3.2e-19  Score=132.82  Aligned_cols=132  Identities=17%  Similarity=0.230  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALN----------------LRPENAVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ...+..+..+|..++..|++++|+..|+++++                .+|.+..++.++|.++..+|++++|+.+++++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34567899999999999999999999999998                78888899999999999999999999999999


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++....++.
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~k  367 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAK  367 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988766544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.83  E-value=7.5e-19  Score=110.29  Aligned_cols=118  Identities=31%  Similarity=0.441  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      .+.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      ...|++++|+..|++++..+|.++.++..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.83  E-value=1.1e-19  Score=142.61  Aligned_cols=156  Identities=15%  Similarity=0.069  Sum_probs=95.0

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+|..+...|++++|+..|.++  ..|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++
T Consensus       412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  491 (597)
T 2xpi_A          412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM  491 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            3455555555555555555554  44445555566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhc------cccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          108 WNALKAATRATEL------EQSW-AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       108 ~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      ++|+..|++++..      +|++ ..++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|..
T Consensus       492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  571 (597)
T 2xpi_A          492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT  571 (597)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            6666666666655      3432 55666666666666666666666666666666666666666666666666666655


Q ss_pred             hcccc
Q 029105          181 SGLSN  185 (199)
Q Consensus       181 ~~~~~  185 (199)
                      .+...
T Consensus       572 ~~~~~  576 (597)
T 2xpi_A          572 HLHES  576 (597)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=2.7e-20  Score=121.44  Aligned_cols=114  Identities=11%  Similarity=0.010  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      .+...|++++.++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            33456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          155 KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       155 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +|+++.++.++|.++..+|++++|...+..+.+.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=9e-20  Score=129.89  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=142.8

Q ss_pred             hhhcchhhhhccchhhhhhccccc--c--------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--D--------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPE   89 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~   89 (199)
                      ...+|.++...|++++|+..+.++  .        .|..+.++..+|.++...|++++|+..|++++..        +|.
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  125 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD  125 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            357799999999999999999887  1        4778899999999999999999999999999988        467


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI-------  154 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------  154 (199)
                      ...++..+|.++...|++++|+.++++++.+        +|....++..+|.++..+|++++|+..+++++.+       
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~  205 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG  205 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            7899999999999999999999999999998        7888899999999999999999999999999986       


Q ss_pred             ------------------------------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          155 ------------------------------------------KPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       155 ------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                                                                .|....++..+|.++...|++++|...+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                                      24456789999999999999999988665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.82  E-value=7.2e-19  Score=111.70  Aligned_cols=128  Identities=27%  Similarity=0.328  Sum_probs=110.6

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      .+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35777888888889999999999988888888888888889888888999999999999888888888888888999989


Q ss_pred             cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          138 FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       138 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      .|++++|+..+++++...|.++.++..++.++...|++++|...+...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            999999999999998888888888888888888888888887765444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.82  E-value=1.2e-18  Score=110.23  Aligned_cols=122  Identities=23%  Similarity=0.312  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------HH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AE  126 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~  126 (199)
                      |..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999987       89


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK  176 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  176 (199)
                      +++.+|.++...|++++|+..|++++...| ++.....++.+...+++.+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999 5888999998888776643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.82  E-value=2e-19  Score=141.09  Aligned_cols=136  Identities=15%  Similarity=0.023  Sum_probs=117.6

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .|.++.++..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++...|+++.++..+|
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  448 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG  448 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            35567788888889999999999999999998888888888899999999999999999999999988888888889999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .++...|++++|+..|++++...|.++.++..++.++...|++++|...+....+.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999988888999999999999998888766555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.82  E-value=1.5e-19  Score=135.03  Aligned_cols=161  Identities=14%  Similarity=0.017  Sum_probs=141.5

Q ss_pred             hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NAVLH   94 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~   94 (199)
                      ..|..+...|++++|+..+.++        ..+..+.++..+|.++...|++++|+..+.+++.+.+.       ...++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            3789999999999999999887        24557899999999999999999999999999988443       34689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cC-CCcHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALA-----IK-PDSEEAR  162 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~  162 (199)
                      .++|.++...|++++|+..+++++.+.|..      ..++.++|.+|..+|++++|+.+|++++.     .+ |..+.++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            999999999999999999999999886543      35899999999999999999999999999     56 8888999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDANRF  190 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~  190 (199)
                      .++|.++..+|++++|...+..+.+...
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999987776665443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.81  E-value=4e-19  Score=112.88  Aligned_cols=130  Identities=28%  Similarity=0.354  Sum_probs=122.5

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            45688999999999999999887  5677788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      +++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus        85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999998863

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.2e-19  Score=139.73  Aligned_cols=171  Identities=16%  Similarity=0.057  Sum_probs=145.8

Q ss_pred             ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .+...|+.+  .....+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|+++.
T Consensus       296 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  373 (514)
T 2gw1_A          296 ALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE  373 (514)
T ss_dssp             HHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             HhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH
Confidence            344444433  23456788888999999999988887  66777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH------HHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAE------AWITLGRAQLN---FGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      ++..+|.++...|++++|+..+++++...|+++.      ++..+|.++..   .|++++|+..|++++..+|+++.++.
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            9999999999999999999999999999888755      89999999999   99999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhcccccc
Q 029105          164 DRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      .++.++...|++++|...+....+
T Consensus       454 ~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          454 GLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999998876655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.6e-18  Score=112.18  Aligned_cols=118  Identities=24%  Similarity=0.319  Sum_probs=111.8

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      ..|..+..++.+|..++..|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            345678899999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      +.+|.++...|++++|+.+|++++.++|++..++..++.+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999988887764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.80  E-value=3.5e-19  Score=126.83  Aligned_cols=151  Identities=17%  Similarity=0.124  Sum_probs=132.2

Q ss_pred             ccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCcHHHHHHHHH
Q 029105           38 LEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPENAVLHEQKAQ   99 (199)
Q Consensus        38 ~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~   99 (199)
                      .|++++|+..|.++          ..|..+.++..+|.++...|++++|+..+++++.+        .|....++..+|.
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            44555555555544          34788999999999999999999999999999987        3666789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCcHHHHH
Q 029105          100 VLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--------KPDSEEARD  163 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~  163 (199)
                      ++...|++++|+..+++++.+        +|....++..+|.++...|++++|+..+++++.+        .|....++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999999999999988        5778889999999999999999999999999998        777788999


Q ss_pred             HHHHHHHHHhhhhhhhhhcccccch
Q 029105          164 DRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .+|.++...|++++|...+....+.
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999998877665543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.80  E-value=1.9e-18  Score=109.59  Aligned_cols=115  Identities=15%  Similarity=0.110  Sum_probs=105.8

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITL  131 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  131 (199)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..+++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      |.++..+|++++|+..|++++...|+++.+......+....
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~  123 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR  123 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999988776666555433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.3e-19  Score=139.51  Aligned_cols=159  Identities=15%  Similarity=0.017  Sum_probs=149.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|.++...|++++|+..+.++  ..|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  319 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN  319 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence            56789999999999999999988  5666 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+....
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776555


Q ss_pred             ch
Q 029105          187 AN  188 (199)
Q Consensus       187 ~~  188 (199)
                      ..
T Consensus       400 ~~  401 (514)
T 2gw1_A          400 EL  401 (514)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.80  E-value=1.9e-18  Score=118.82  Aligned_cols=131  Identities=18%  Similarity=0.107  Sum_probs=119.5

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      .....++.+|.+++..|++++|+..|++++  .| ++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            345678899999999999999999999985  33 688999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSE----------------EARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +..+|++++|+..|++++...|.+.                .++.++|.++...|++++|...+..+.+.
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            9999999999999999999888766                99999999999999999998776555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.80  E-value=2.2e-19  Score=137.87  Aligned_cols=130  Identities=20%  Similarity=0.290  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +..+..+..+|.+++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|+++.+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHhhhhhhhhhcc
Q 029105          134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA--LHLVKRRKHLHLSGL  183 (199)
Q Consensus       134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~  183 (199)
                      ++..+|++++|+..|+++++++|++..++..++.+  +...|++++|...+.
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999998  888899999887655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.80  E-value=1.9e-18  Score=115.70  Aligned_cols=132  Identities=13%  Similarity=0.038  Sum_probs=125.1

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      .....+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +...|++++|+..+++++...|.++.++..++.++...|++++|...+....
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887665443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=1.6e-19  Score=139.84  Aligned_cols=156  Identities=17%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus       315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (537)
T 3fp2_A          315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF  394 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            3344444444444444444444  33444444444555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhhcccccHH------HHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          108 WNALKAATRATELEQSWAE------AWITLGRAQLNF----------GEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ++|+..+++++...|+++.      .++.+|.++...          |++++|+..|++++..+|+++.++..+|.++..
T Consensus       395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  474 (537)
T 3fp2_A          395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ  474 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5555555555544443322      133334455555          556666666666666666666677777777777


Q ss_pred             Hhhhhhhhhhcccc
Q 029105          172 VKRRKHLHLSGLSN  185 (199)
Q Consensus       172 ~~~~~~a~~~~~~~  185 (199)
                      .|++++|...+...
T Consensus       475 ~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          475 MEKIDEAIELFEDS  488 (537)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHH
Confidence            77777666554433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=6e-19  Score=127.44  Aligned_cols=160  Identities=16%  Similarity=0.078  Sum_probs=143.2

Q ss_pred             hhhcchhhhhccchhhhhhccccc--c--------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--D--------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PE   89 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~   89 (199)
                      ...+|.++...|++++|+..+.++  .        .|....++..+|.++...|++++|+..+++++.+.        |.
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (311)
T 3nf1_A           72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD  151 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            356799999999999999999887  1        47788899999999999999999999999999874        55


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI-------  154 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------  154 (199)
                      ...++..+|.++...|++++|+.++++++..        +|....++..+|.++...|++++|+..+++++..       
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  231 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG  231 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            6788999999999999999999999999998        7888889999999999999999999999999974       


Q ss_pred             ------------------------------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          155 ------------------------------------------KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       155 ------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                                                                .|..+.++..+|.++...|++++|...+..+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                                      466678899999999999999999887665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=8.5e-19  Score=126.58  Aligned_cols=156  Identities=12%  Similarity=-0.033  Sum_probs=124.1

Q ss_pred             hhhcchhhhhccchhhhhhccccc--c------hhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCc------HH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--D------AKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPEN------AV   92 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~------~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~   92 (199)
                      ..++|.++...|++++|+..|.++  .      ....+.++..+|.++... |++++|+.+|++++.+.|.+      ..
T Consensus        80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~  159 (292)
T 1qqe_A           80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK  159 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            357899999999999999999888  1      122367899999999996 99999999999999998754      46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH----
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAE-------AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA----  161 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~----  161 (199)
                      ++.++|.++..+|++++|+.+|++++.+.|++..       ++.++|.++..+|++++|+..|++++.++|.+...    
T Consensus       160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  239 (292)
T 1qqe_A          160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN  239 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            7899999999999999999999999999887543       67899999999999999999999999999987653    


Q ss_pred             -HHHHHHHHH--HHhhhhhhhhhcc
Q 029105          162 -RDDRQTALH--LVKRRKHLHLSGL  183 (199)
Q Consensus       162 -~~~l~~~~~--~~~~~~~a~~~~~  183 (199)
                       +..++.++.  ..+++++|...+-
T Consensus       240 ~l~~l~~~~~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          240 FLKSLIDAVNEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhc
Confidence             344555443  2345666665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=9.7e-19  Score=126.27  Aligned_cols=155  Identities=9%  Similarity=-0.088  Sum_probs=129.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--c--hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--D--AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ..++..+...+++++|+..+...  .  .|+++.+++.+|.++...|++++|+..+++     |+++.++..+|.++..+
T Consensus        69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~  143 (291)
T 3mkr_A           69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL  143 (291)
T ss_dssp             HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Confidence            34566667777788888877765  2  588888899999999999999999998887     78889999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLG--RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |++++|+..+++++..+|++.......+  .++...|++++|+..|++++..+|+++.++.++|.++..+|++++|...+
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l  223 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL  223 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999998765444333  33445689999999999999999999999999999999999999999877


Q ss_pred             ccccch
Q 029105          183 LSNDAN  188 (199)
Q Consensus       183 ~~~~~~  188 (199)
                      ..+.+.
T Consensus       224 ~~al~~  229 (291)
T 3mkr_A          224 QEALDK  229 (291)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=6.8e-19  Score=127.15  Aligned_cols=160  Identities=16%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             hhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~   90 (199)
                      ..+|..+...|++++|+..+.++          ..|..+.++..+|.++...|++++|+..+++++..        .|..
T Consensus        31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  110 (311)
T 3nf1_A           31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV  110 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            67799999999999999999887          15778899999999999999999999999999987        3566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAI--------  154 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------  154 (199)
                      ..++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+..|++++..        
T Consensus       111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7899999999999999999999999999884        677888999999999999999999999999998        


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          155 KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       155 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .|....++..++.++...|++++|...+....+.
T Consensus       191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6777889999999999999999998877666543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.79  E-value=7.6e-19  Score=137.63  Aligned_cols=151  Identities=14%  Similarity=-0.053  Sum_probs=133.7

Q ss_pred             cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      ..+...|+.+  .....+|.++...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus        14 ~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   91 (568)
T 2vsy_A           14 AAVRHRPQDF--VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP   91 (568)
T ss_dssp             -------CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            4444555432  34467899999999999999999998  7888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      .++.++|.++...|++++|+..++++++.+|+++.++..+|.++..+   |++++|+..++++++.+|.+...+..++
T Consensus        92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A           92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            99999999999999999999999999999999999999999999999   9999999999999999998766665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.79  E-value=4.7e-19  Score=114.62  Aligned_cols=111  Identities=13%  Similarity=0.017  Sum_probs=102.3

Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105           78 GKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      ..|++++.++|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          158 SEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       158 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++.++..+|.++..+|++++|...+....+.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998877665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.79  E-value=4.4e-18  Score=121.41  Aligned_cols=149  Identities=15%  Similarity=0.063  Sum_probs=85.5

Q ss_pred             hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-  103 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-  103 (199)
                      ..+|..+...|++++|+..|.++..|.++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++..+|.++.. 
T Consensus        10 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g   87 (273)
T 1ouv_A           10 VGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSG   87 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCC
Confidence            34455556666666666666555445555556666666666    666666666666665553  45555666666665 


Q ss_pred             ---cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----H
Q 029105          104 ---LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL----V  172 (199)
Q Consensus       104 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~  172 (199)
                         .+++++|+..|++++..  +++.+++.+|.+|..    .+++++|+.+|+++++.+  ++.++.+++.++..    .
T Consensus        88 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~  163 (273)
T 1ouv_A           88 QGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP  163 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred             CCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC
Confidence               66666666666666554  245555666666655    566666666666665543  34555555555555    5


Q ss_pred             hhhhhhhhhcc
Q 029105          173 KRRKHLHLSGL  183 (199)
Q Consensus       173 ~~~~~a~~~~~  183 (199)
                      +++++|...+.
T Consensus       164 ~~~~~A~~~~~  174 (273)
T 1ouv_A          164 KDLKKALASYD  174 (273)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            55555554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.78  E-value=1.8e-18  Score=129.05  Aligned_cols=161  Identities=11%  Similarity=-0.066  Sum_probs=141.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NAVL   93 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~   93 (199)
                      +..|..+...|++++|+..|.++        ..+..+.++..+|.++...|+++.|+..+++++.+.+.       ...+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  184 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS  184 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            45688899999999999998877        35567889999999999999999999999999987543       2568


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcHHHH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALA-----IKPDSEEAR  162 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~  162 (199)
                      +.++|.++...|++++|+..+++++.+.+      ....++.++|.+|..+|++++|+.+|++++.     .+|..+.++
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            89999999999999999999999998743      2356789999999999999999999999999     788889999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      .++|.++..+|++++|...+..+.+..
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988776665543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.78  E-value=1e-18  Score=113.16  Aligned_cols=103  Identities=21%  Similarity=0.175  Sum_probs=93.7

Q ss_pred             HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA----------WNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      -+.+.|++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|+++.+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          138 FG-----------EPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       138 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      +|           ++++|+.+|+++++++|++...+..+..+-.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            85           8999999999999999999887776665443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=2.6e-18  Score=124.94  Aligned_cols=144  Identities=13%  Similarity=0.010  Sum_probs=102.1

Q ss_pred             hhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           42 DDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV-LHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        42 ~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ++|+..|.++   ..|.+..+|..+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6777777776   25667777777777777777777777777777777777765 7777777777777777777777777


Q ss_pred             hhcccccHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          118 TELEQSWAEAWITLGRAQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++..|.+..++...+.+.. ..|++++|+..|+++++.+|+++.+|..++.++...|++++|...+..+
T Consensus       161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  229 (308)
T 2ond_A          161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7777766666665555433 2577777777777777777777777777777777777777666554433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.78  E-value=1.7e-18  Score=106.74  Aligned_cols=107  Identities=18%  Similarity=0.198  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWIT  130 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~  130 (199)
                      +|.++.++..+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.  ++.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHhcCCCcH
Q 029105          131 LGRAQLNF-GEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus       131 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~  159 (199)
                      +|.++... |++++|+.++++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=3.3e-18  Score=123.25  Aligned_cols=136  Identities=15%  Similarity=0.087  Sum_probs=127.8

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .|.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ..+...++.++|+..+++++..+|+++.++.++|.++...|++++|...+......
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999877665553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.77  E-value=5.7e-19  Score=130.02  Aligned_cols=131  Identities=21%  Similarity=0.225  Sum_probs=97.8

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----------------VLHEQKAQVLLELGDAWNALKAA  114 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~  114 (199)
                      ..+..+..+..+|..++..|++++|+..|++++.+.|++.                 .++.++|.++..+|+|++|+..|
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4567888999999999999999999999999999999877                 48999999999999999999999


Q ss_pred             HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-hhhhhhhhc
Q 029105          115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK-RRKHLHLSG  182 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~  182 (199)
                      ++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+..... ..+++...+
T Consensus       254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~  322 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY  322 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998855544 444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.77  E-value=1e-18  Score=117.00  Aligned_cols=123  Identities=15%  Similarity=0.055  Sum_probs=111.2

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCCh--H
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA-QLNFGEP--D  142 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~--~  142 (199)
                      .+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++  +
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            346678999999999999999999999999999999999999999999999999999999999999999 8899999  9


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +|+..|++++..+|+++.++..+|.++...|++++|...+....+.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999998877665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=2.1e-18  Score=118.94  Aligned_cols=159  Identities=12%  Similarity=-0.031  Sum_probs=140.7

Q ss_pred             hHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcc----cHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDG----KFREALGKWEAALNLRPENAVLHEQKAQVL  101 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  101 (199)
                      ...+.+|.++...+++++|+..|.++....++.+++.+|.++.. +    ++++|+.+|+++++  +.++.+++++|.++
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y   95 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL   95 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence            34467899999999999999999999777789999999999998 7    99999999999965  57899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          102 LE----LGDAWNALKAATRATELEQ--SWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       102 ~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..    .+++++|+.+|++++...|  .++.+++.+|.+|..    .+++++|+.+|++++.. |.++.+..+||.+|..
T Consensus        96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            88    8999999999999999988  569999999999999    88999999999999999 7778899999999976


Q ss_pred             H-h-----hhhhhhhhcccccch
Q 029105          172 V-K-----RRKHLHLSGLSNDAN  188 (199)
Q Consensus       172 ~-~-----~~~~a~~~~~~~~~~  188 (199)
                      - |     ++++|...+..+.+.
T Consensus       175 g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          175 GEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             CBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHc
Confidence            4 2     678887766655443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.77  E-value=1.1e-18  Score=109.21  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=89.5

Q ss_pred             hcccHHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           69 EDGKFREALGKWEAALNL---RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        69 ~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      ..|++++|+..|++++++   +|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468899999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          146 ESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      ..+++++...|+++.+......+....+
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999887655444443333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=7.4e-18  Score=122.51  Aligned_cols=162  Identities=9%  Similarity=-0.114  Sum_probs=142.8

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHH-HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLAL-SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-  103 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-  103 (199)
                      ...+|..+...|++++|...|.++  ..|.++. ++..+|.++...|++++|+..|+++++..|.+..++...+.+... 
T Consensus       102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  181 (308)
T 2ond_A          102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            356788899999999999999998  5666665 899999999999999999999999999999998888777766544 


Q ss_pred             cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-cHHHHHHHHHHHHHHhhhhhhh
Q 029105          104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI---KPD-SEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      .|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++..   .|+ ...+|..++..+...|+.++|.
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~  261 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            799999999999999999999999999999999999999999999999996   553 6889999999999999999988


Q ss_pred             hhcccccchh
Q 029105          180 LSGLSNDANR  189 (199)
Q Consensus       180 ~~~~~~~~~~  189 (199)
                      .....+.+..
T Consensus       262 ~~~~~a~~~~  271 (308)
T 2ond_A          262 KVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            7665555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.76  E-value=1.7e-18  Score=115.94  Aligned_cols=134  Identities=16%  Similarity=0.033  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      |.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            444566888999999999999999999999999999999999999999999999999999999999999 8877766665


Q ss_pred             HHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          134 AQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       134 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +.. ..+...+|+..+++++..+|+++.++..+|.++...|++++|...+......
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence            533 3345566899999999999999999999999999999999998877655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.76  E-value=5.1e-18  Score=111.93  Aligned_cols=126  Identities=12%  Similarity=0.062  Sum_probs=115.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..++..|++++|+..|.++  ..|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~   96 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   96 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence            56799999999999999999988  6778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRA--QLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~  154 (199)
                      +++|+..+++++.++|.++.++..++.+  +...|++++|+..+.++..+
T Consensus        97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999888555554  88899999999999876543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.76  E-value=1.5e-17  Score=119.50  Aligned_cols=104  Identities=29%  Similarity=0.364  Sum_probs=94.2

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA  134 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  134 (199)
                      ..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCc
Q 029105          135 QLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                      +..+|++++|+..|++++.++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999888765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=5.4e-18  Score=124.72  Aligned_cols=126  Identities=13%  Similarity=-0.006  Sum_probs=116.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhH---------------HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQL---------------ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      .++|..++..|++++|+..|.++  ..|.+               ..++..+|.++...|++++|+..|++++.++|+++
T Consensus       151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  230 (336)
T 1p5q_A          151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE  230 (336)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            56799999999999999999988  44554               68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA-IESFERALAI  154 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~  154 (199)
                      .+++++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++| ...|++++..
T Consensus       231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998 4566666543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.75  E-value=2.3e-17  Score=117.69  Aligned_cols=149  Identities=15%  Similarity=0.054  Sum_probs=92.0

Q ss_pred             hhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      ..+|.++..    .+++++|+..|.++....++.+++.+|.++..    .+++++|+..|++++..+  ++.++..+|.+
T Consensus        42 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~  119 (273)
T 1ouv_A           42 FNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGI  119 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence            455666666    66666666666666333455666666666666    666666666666666552  56666666666


Q ss_pred             HHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Q 029105          101 LLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL-  171 (199)
Q Consensus       101 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  171 (199)
                      +..    .+++++|+.+++++++..  ++.+++.+|.++..    .+++++|+.+|+++++.  +++.++..+|.++.. 
T Consensus       120 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g  195 (273)
T 1ouv_A          120 YHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHG  195 (273)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence            666    666666666666666654  35556666666665    66666666666666655  235556666666666 


Q ss_pred             ---Hhhhhhhhhhcc
Q 029105          172 ---VKRRKHLHLSGL  183 (199)
Q Consensus       172 ---~~~~~~a~~~~~  183 (199)
                         .+++++|...+.
T Consensus       196 ~~~~~~~~~A~~~~~  210 (273)
T 1ouv_A          196 EGATKNFKEALARYS  210 (273)
T ss_dssp             CSSCCCHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHH
Confidence               666666555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=3.8e-18  Score=122.57  Aligned_cols=159  Identities=16%  Similarity=0.050  Sum_probs=134.9

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ....+|..++..|++++|+..|.++  ..|.++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3457799999999999999999998  67888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccH-----HHH--------------------------HHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          105 GDAWNALKAATRATELEQSWA-----EAW--------------------------ITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~-----~~~--------------------------~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      |++++|+..+++++.++|+++     ..+                          ..++..  ..|++++|++.++++++
T Consensus        86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~  163 (281)
T 2c2l_A           86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHE  163 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGT
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence            999999999999999998652     111                          122222  36788999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHH-hhhhhhhhhcccccc
Q 029105          154 IKPDSEEARDDRQTALHLV-KRRKHLHLSGLSNDA  187 (199)
Q Consensus       154 ~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  187 (199)
                      .+|++......++.++... +.++++...+....+
T Consensus       164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999988888888877776 667777665544433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.75  E-value=1.7e-17  Score=115.37  Aligned_cols=132  Identities=14%  Similarity=0.037  Sum_probs=116.4

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI  129 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  129 (199)
                      .+..++.+|..++..|++++|+..|++++...|.++   .+++.+|.+++..|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            356789999999999999999999999999988764   78999999999999999999999999999998764   789


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHhh
Q 029105          130 TLGRAQLN------------------FGEPDKAIESFERALAIKPDSEEAR-----------------DDRQTALHLVKR  174 (199)
Q Consensus       130 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~  174 (199)
                      .+|.++..                  .|++++|+..|+++++..|+++.+.                 ..+|.++...|+
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~  162 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA  162 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            99999876                  5789999999999999999987554                 578889999999


Q ss_pred             hhhhhhhcccccc
Q 029105          175 RKHLHLSGLSNDA  187 (199)
Q Consensus       175 ~~~a~~~~~~~~~  187 (199)
                      +.+|...+....+
T Consensus       163 ~~~A~~~~~~~l~  175 (225)
T 2yhc_A          163 WVAVVNRVEGMLR  175 (225)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998876654443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.75  E-value=5.8e-18  Score=126.53  Aligned_cols=162  Identities=18%  Similarity=0.078  Sum_probs=139.6

Q ss_pred             hhhcchhhhhccc--------------------hhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHH
Q 029105           28 DQEHGLSGAELEK--------------------NDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGK   79 (199)
Q Consensus        28 ~~~~g~~~~~~~~--------------------~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~   79 (199)
                      ...+|.++...|+                    +++|+..+.++        ..+....++..+|.++...|++++|+..
T Consensus       130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (406)
T 3sf4_A          130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  209 (406)
T ss_dssp             HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            3567889999999                    99999888776        3566778899999999999999999999


Q ss_pred             HHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHH
Q 029105           80 WEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        80 ~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      +++++.+.+...      .++..+|.++...|++++|+.++++++.+.|..      ..++..+|.++...|++++|+..
T Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  289 (406)
T 3sf4_A          210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  289 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            999998865543      489999999999999999999999999987765      77889999999999999999999


Q ss_pred             HHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          148 FERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       148 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      +++++.+.+..      ..++..+|.++...|++++|...+..+.+..
T Consensus       290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  337 (406)
T 3sf4_A          290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999885543      6688999999999999999988776665543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.75  E-value=3.2e-17  Score=118.28  Aligned_cols=155  Identities=7%  Similarity=-0.029  Sum_probs=127.8

Q ss_pred             hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHE   95 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~   95 (199)
                      ..+..+...|++++|+..+.+.        ..+.....++.+|.++...|++++|+..+++++...+..      ..++.
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            4567788899999999988755        112334566779999999999999999999999865443      56899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhc---cccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHH
Q 029105           96 QKAQVLLELGDAWNALKAATRATEL---EQSW----AEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEAR  162 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~  162 (199)
                      ++|.++...|++++|+.++++++.+   .|++    ..+++++|.+|..+|++++|+.++++++.+.+.      ...++
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999999999999999944   4443    268999999999999999999999999987543      27789


Q ss_pred             HHHHHHHHHHhhhhhh-hhhccc
Q 029105          163 DDRQTALHLVKRRKHL-HLSGLS  184 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a-~~~~~~  184 (199)
                      .++|.++..+|++++| ...+..
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHH
Confidence            9999999999999999 443433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=127.90  Aligned_cols=161  Identities=12%  Similarity=-0.043  Sum_probs=127.9

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHh--cccHHHHHHHHHHHHccCCCcHHHH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAE--DGKFREALGKWEAALNLRPENAVLH   94 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~   94 (199)
                      ...++|.++..+|++++|+..+.++          ..+..+.++..+|.++..  .+++++|+.+|++++.++|+++.++
T Consensus        96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~  175 (472)
T 4g1t_A           96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT  175 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence            3457899999999999999988776          233456777777776654  4679999999999999999999999


Q ss_pred             HHHHHHHHH---cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105           95 EQKAQVLLE---LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQT  167 (199)
Q Consensus        95 ~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  167 (199)
                      ..+|.++..   .+++++|++.+++++.++|+++.++..+|..+..    .|++++|+..+++++..+|.++.++.++|.
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~  255 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK  255 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            998888654   5777888999999999999888888888876654    456788888888888888888888888888


Q ss_pred             HHHHHhhhhhhhhhcccccc
Q 029105          168 ALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       168 ~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++...|++++|...+..+.+
T Consensus       256 ~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          256 FYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHHHHHH
Confidence            88888888888776655544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.2e-17  Score=105.55  Aligned_cols=109  Identities=17%  Similarity=0.073  Sum_probs=103.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ...|..++..|++++|+..|.++  ..|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|+
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence            56799999999999999999998  7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc------cccHHHHHHHHHHHHh
Q 029105          107 AWNALKAATRATELE------QSWAEAWITLGRAQLN  137 (199)
Q Consensus       107 ~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~  137 (199)
                      +++|+..+++++.++      |++..++..++.+...
T Consensus        88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999      8899999888887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.74  E-value=2.2e-17  Score=119.17  Aligned_cols=163  Identities=7%  Similarity=-0.059  Sum_probs=132.6

Q ss_pred             chhhhhccchhhhhhccccc-----chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF-----DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQK   97 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l   97 (199)
                      ...+...|++++|+..+.++     ..|..   ...+..+|.++...+++++|+..|++++.+.+..      ..++.++
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            56677889999999998876     22222   3345568999999999999999999999864432      3479999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105           98 AQVLLELGDAWNALKAATRATEL-------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD  164 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  164 (199)
                      |.++...|++++|+.++++++..       .+....+++++|.+|..+|++++|+.++++++.+.+..      +.++.+
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            99999999999999999999953       34456689999999999999999999999999886443      789999


Q ss_pred             HHHHHHHHhh-hhhhhhhcccccchhhhcCC
Q 029105          165 RQTALHLVKR-RKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       165 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~  194 (199)
                      +|.++..+|+ +++|...+..+....-..|+
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            9999999995 59998877766655444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=104.52  Aligned_cols=114  Identities=18%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      ....+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~   97 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM   97 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            3467799999999999999999988  67888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE  140 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  140 (199)
                      |++++|+..+++++..+|.+..++..++.++..+|+
T Consensus        98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999988764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=3.6e-17  Score=124.97  Aligned_cols=154  Identities=12%  Similarity=0.027  Sum_probs=128.4

Q ss_pred             hhcchhhhhccchhhhhhccccc-----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PE   89 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~   89 (199)
                      ..+|.++...|++++|++.|.++           .+|....++.++|.+|..+|++++|+.++++++.+.        +.
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~  134 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE  134 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence            45799999999999999999877           245567788999999999999999999999998763        34


Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105           90 NAVLHEQKAQVLLEL--GDAWNALKAATRATELEQSWAEAWITLGRAQLN---FGEPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus        90 ~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                      .+.++..+|.++...  ++|++|+.+|+++++++|+++.++..+|.++..   .++.++|+..|+++++++|+++.++..
T Consensus       135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~  214 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL  214 (472)
T ss_dssp             CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence            578888888887765  469999999999999999999999999988654   577889999999999999999999999


Q ss_pred             HHHHHHHH----hhhhhhhhhc
Q 029105          165 RQTALHLV----KRRKHLHLSG  182 (199)
Q Consensus       165 l~~~~~~~----~~~~~a~~~~  182 (199)
                      ++.++...    +++++|...+
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~  236 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLV  236 (472)
T ss_dssp             HHHHHHHCC------CHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHH
Confidence            88776654    4555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.73  E-value=1.2e-17  Score=121.38  Aligned_cols=155  Identities=13%  Similarity=0.008  Sum_probs=123.3

Q ss_pred             cchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC------cHHHHHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------NAVLHEQ   96 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~   96 (199)
                      .|.++...|++++|+..|.++        ..+....++..+|.++...|++++|+.+|++++.+.+.      ...++.+
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367788889999998888877        22344678888999999999999999999998887432      1467888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD  164 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  164 (199)
                      +|.++.. |++++|+.+|++++.+.|..      ..++.++|.++..+|++++|+..|++++.+.|.+      ..++..
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA  200 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            9999988 99999999999999887643      5678889999999999999999999999876543      346778


Q ss_pred             HHHHHHHHhhhhhhhhhccccc
Q 029105          165 RQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ++.++..+|++++|...+....
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh
Confidence            8888888899888887665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.73  E-value=2.2e-17  Score=109.02  Aligned_cols=114  Identities=9%  Similarity=-0.077  Sum_probs=103.6

Q ss_pred             hhhcchhhhhccchhhhhhccccc--c------------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--D------------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR   87 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   87 (199)
                      ..+.|..++..|+|++|+..|.++  .                  .|..+.++..+|.+++..|++++|+..+++++.++
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            357799999999999999999988  3                  67788999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH-HHHHHHHHHHHhcCCh
Q 029105           88 PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA-EAWITLGRAQLNFGEP  141 (199)
Q Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~  141 (199)
                      |+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++.
T Consensus        94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 6677787776655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=124.61  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=105.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGKW   80 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~   80 (199)
                      ..+|.++...|++++|+..+.++        ..+..+.++..+|.++...|+                    +++|+..+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            34566666677777777666655        122235566777777777777                    77777777


Q ss_pred             HHHHcc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH------HHHHHHHHHHHhcCChHHHHHHH
Q 029105           81 EAALNL------RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA------EAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus        81 ~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      .+++.+      .|....++..+|.++...|++++|+..+++++.+.|...      .++..+|.++...|++++|+..+
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            776655      233345677777777777777777777777777655432      26777777777777777777777


Q ss_pred             HHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          149 ERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       149 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ++++.+.|..      ..++..+|.++...|++++|...+..+.+
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            7777665544      55677777777777777777665554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.73  E-value=3e-17  Score=111.71  Aligned_cols=158  Identities=15%  Similarity=0.025  Sum_probs=124.4

Q ss_pred             hhccchhhhhh---cccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc------cCCCcHHHHHHHHHHHHHcCC
Q 029105           36 AELEKNDDNNE---HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALN------LRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        36 ~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~  106 (199)
                      +..|++++|..   .+.. ..+..+.++..+|.++...|++++|+..+++++.      ..|....++.++|.++...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45788888888   4432 3336788999999999999999999999999998      445557889999999999999


Q ss_pred             HHHHHHHHHHHhhc------cc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHHh
Q 029105          107 AWNALKAATRATEL------EQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKP--DS----EEARDDRQTALHLVK  173 (199)
Q Consensus       107 ~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~  173 (199)
                      +++|+..+++++.+      +| ....++..+|.++...|++++|+..+++++.+.+  .+    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999988      33 3456789999999999999999999999997632  22    335689999999999


Q ss_pred             hhhhhhhhcccccchhhhcCC
Q 029105          174 RRKHLHLSGLSNDANRFVVGD  194 (199)
Q Consensus       174 ~~~~a~~~~~~~~~~~~~~~~  194 (199)
                      ++++|...+..+.+..-..|+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~~  182 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIFAELED  182 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHcCC
Confidence            999998877666655444444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.72  E-value=1.3e-17  Score=121.15  Aligned_cols=162  Identities=18%  Similarity=0.072  Sum_probs=139.3

Q ss_pred             hhhcchhhhhccc--------------------hhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHH
Q 029105           28 DQEHGLSGAELEK--------------------NDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGK   79 (199)
Q Consensus        28 ~~~~g~~~~~~~~--------------------~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~   79 (199)
                      ...+|.++...|+                    +++|+..+.++        ..+..+.++..+|.++...|++++|+..
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3567899999999                    89999888776        3556678899999999999999999999


Q ss_pred             HHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHH
Q 029105           80 WEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        80 ~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      +++++...+..      ..++..+|.++...|++++|+..+++++.+.+..      ..++..+|.++...|++++|+..
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999876543      2489999999999999999999999999987765      77899999999999999999999


Q ss_pred             HHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          148 FERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       148 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      +++++.+.+..      ..++..++.++...|++++|...+..+.+..
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            99999886543      4588999999999999999988776665543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.72  E-value=1.5e-17  Score=124.81  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=101.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc-----------------HHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK-----------------FREALGKWEAA   83 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~   83 (199)
                      ..+|.++...|++++|+..+.++        ..+....++..+|.++...|+                 +++|+..++++
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            34566666666666666666655        244556666667777777777                 67777766666


Q ss_pred             HccC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH------HHHHHHHHHHhcCChHHHHHHHHHH
Q 029105           84 LNLR------PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE------AWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus        84 l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      +.+.      +....++..+|.++...|++++|+.++++++.+.|....      ++..+|.++...|++++|+..|+++
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            6542      222356666777777777777777777777766554322      6667777777777777777777777


Q ss_pred             HhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          152 LAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       152 l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +.+.|..      ..++..+|.++...|++++|...+..+.
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7665532      4566677777777777777665554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.72  E-value=8.5e-18  Score=126.22  Aligned_cols=159  Identities=19%  Similarity=0.092  Sum_probs=103.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------CCCcHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL------RPENAVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~   94 (199)
                      ..+|.++...|++++|+..+.++        ..+..+.++..+|.++...|++++|+..+++++.+      .|....++
T Consensus        90 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  169 (411)
T 4a1s_A           90 SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL  169 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            45566666667777666666655        24556666777777777777777777777776666      34445666


Q ss_pred             HHHHHHHHHcCC-----------------HHHHHHHHHHHhhcc------cccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105           95 EQKAQVLLELGD-----------------AWNALKAATRATELE------QSWAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus        95 ~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      ..+|.++...|+                 +++|+.++++++.+.      +....++..+|.++...|++++|+.+++++
T Consensus       170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (411)
T 4a1s_A          170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER  249 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            777777777777                 777777777666653      233446667777777777777777777777


Q ss_pred             HhcCCCcHH------HHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          152 LAIKPDSEE------ARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       152 l~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +.+.|....      ++..++.++...|++++|...+.....
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  291 (411)
T 4a1s_A          250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA  291 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            766554322      666777777777777776665544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.72  E-value=3.2e-18  Score=131.40  Aligned_cols=130  Identities=12%  Similarity=0.081  Sum_probs=118.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..++++++++|+++.++.++|.++..+|+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            46789999999999999999998  7788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHH--HHhcCChHHHHHHHH-----------HHHhcCCCc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRA--QLNFGEPDKAIESFE-----------RALAIKPDS  158 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~  158 (199)
                      +++|+..++++++++|+++.++..++.+  +..+|++++|+..++           +++.++|..
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999999998  889999999999999           888887764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.72  E-value=7.8e-17  Score=120.30  Aligned_cols=161  Identities=13%  Similarity=0.072  Sum_probs=134.0

Q ss_pred             hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc-----cC-CCcHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN-----LR-PENAVL   93 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~-~~~~~~   93 (199)
                      ..++|.++...|++++|+..+.++        ..+..+.++..+|.++...|++++|+.++++++.     .+ |..+.+
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  266 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA  266 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence            356789999999999999998887        2444567899999999999999999999999998     46 777889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATELE-----QSWAEAWITLGRAQLNFGE---PDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      +.++|.++...|++++|+.++++++.+.     |.....+..+|.++...|+   +++|+..+++. ...|....++..+
T Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l  345 (383)
T 3ulq_A          267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence            9999999999999999999999999884     4444456779999999999   78888888776 3445556788999


Q ss_pred             HHHHHHHhhhhhhhhhcccccchh
Q 029105          166 QTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       166 ~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                      |.++...|++++|...+..+.+..
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999988776665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.72  E-value=5e-17  Score=102.66  Aligned_cols=114  Identities=17%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus        16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence            56789999999999999999988  6677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  142 (199)
                      +++|+..+++++..+|+++.++..+|.++..+|+++
T Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999998763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.71  E-value=2.5e-17  Score=104.51  Aligned_cols=99  Identities=11%  Similarity=0.018  Sum_probs=89.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH-------HH
Q 029105           89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-------EA  161 (199)
Q Consensus        89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~  161 (199)
                      +.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++.       .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999988653       57


Q ss_pred             HHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          162 RDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       162 ~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +.++|.++..+|++++|...+..+..
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88999999999999999887665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.71  E-value=1.6e-16  Score=99.95  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..++.+|..+...|++++|+..+++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhhhhhhcccccch
Q 029105          172 VKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       172 ~~~~~~a~~~~~~~~~~  188 (199)
                      .|++++|...+....+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999998877665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.70  E-value=1.6e-16  Score=105.08  Aligned_cols=102  Identities=14%  Similarity=0.001  Sum_probs=95.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105           87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      .+.++..+..+|.+++..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.++|+++.++.++|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhcccccch
Q 029105          167 TALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       167 ~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      .++..+|++++|...+....+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999877666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.70  E-value=5.2e-17  Score=118.02  Aligned_cols=156  Identities=19%  Similarity=0.198  Sum_probs=88.7

Q ss_pred             hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGKWE   81 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~   81 (199)
                      .+|.++...|++++|+..+.++        ..+....++..+|.++...|+                    +++|+..++
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            4455555556666666555554        122234455566666666666                    666666666


Q ss_pred             HHHcc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHH
Q 029105           82 AALNL------RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus        82 ~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      +++.+      .+....++..+|.++...|++++|+..+++++.+.+..      ..++..+|.++...|++++|+..++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55544      22223456666666666666666666666666554332      2256666666666666666666666


Q ss_pred             HHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          150 RALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       150 ~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      +++.+.|..      ..++..+|.++...|++++|...+..+
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            666554433      445666666666666666665544433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.70  E-value=5e-17  Score=110.75  Aligned_cols=123  Identities=10%  Similarity=-0.021  Sum_probs=107.0

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHH----------------HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA----------------LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      ...|..++..|++++|+..|.++  ..|.++                .++..+|.++...|++++|+..+++++.++|++
T Consensus        42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            56799999999999999999988  334333                789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI-ESFERA  151 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~a  151 (199)
                      +.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..+++..++. ..|...
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988887776 334433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.70  E-value=1.7e-17  Score=122.17  Aligned_cols=132  Identities=15%  Similarity=0.044  Sum_probs=84.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHH-----------------HHHHHHhhHHHhcccHHHHHHHHHHHHccCCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA-----------------LSFEAQGNNLAEDGKFREALGKWEAALNLRPE   89 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~   89 (199)
                      ..+|..++..|++++|+..|.++  ..|.+.                 .+++++|.++...|++++|+..|++++.++|+
T Consensus       183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  262 (338)
T 2if4_A          183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK  262 (338)
T ss_dssp             HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            56799999999999999999987  455554                 48999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA-QLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      +..+++++|.++..+|++++|+..|++++.++|+++.++..++.+ ....+..+++...|.+++...|.++.
T Consensus       263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999999999999999999999999999999999988 44567788899999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=2.4e-16  Score=102.34  Aligned_cols=101  Identities=22%  Similarity=0.080  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-------cHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS-------WAE-----AWITLGRAQLNFGEPDKAIESFERALAI----  154 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~----  154 (199)
                      ...+.++|..++..|+|++|+..|+++++++|+       +..     +|.++|.++..+|++++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            466889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105          155 ---KPDSEEAR----DDRQTALHLVKRRKHLHLSGLSNDANRFV  191 (199)
Q Consensus       155 ---~p~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  191 (199)
                         +|++..+|    +++|.++..+|++++|...+..+.+....
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence               99999999    99999999999999999998887776544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.69  E-value=4e-16  Score=99.76  Aligned_cols=106  Identities=13%  Similarity=0.012  Sum_probs=97.4

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105           85 NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus        85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                      ..+|.++..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhcccccchhh
Q 029105          165 RQTALHLVKRRKHLHLSGLSNDANRF  190 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~~~~~  190 (199)
                      +|.++...|++++|...+....+...
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            99999999999999887776665443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.69  E-value=1.7e-16  Score=99.10  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             hccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (199)
                      ..|++++|+..|.++  .   +|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            367899999999988  4   69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccHHHHHHHHHHHHh
Q 029105          112 KAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus       112 ~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      ..+++++...|+++........+...
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999998776544443333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=3.5e-16  Score=113.63  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=120.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~   94 (199)
                      .++|.++...|++++|+..|.++        .....+.++..+|.++.. |++++|+.+|++++.+.|..      ..++
T Consensus        80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  158 (307)
T 2ifu_A           80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI  158 (307)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            46788999999999999999887        122356789999999999 99999999999999987653      5789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-----HHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-----ARD  163 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~  163 (199)
                      .++|.++..+|++++|+.+|++++.+.|.+      ..++..+|.++..+|++++|+..|++++ ++|....     ...
T Consensus       159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~  237 (307)
T 2ifu_A          159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALE  237 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHH
Confidence            999999999999999999999999987653      3478899999999999999999999999 9997542     234


Q ss_pred             HHHHHHHHHhhhhhh
Q 029105          164 DRQTALHLVKRRKHL  178 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a  178 (199)
                      .++.++ ..++.+.+
T Consensus       238 ~l~~~~-~~~d~~~~  251 (307)
T 2ifu_A          238 DLLQAY-DEQDEEQL  251 (307)
T ss_dssp             HHHHHH-HTTCHHHH
T ss_pred             HHHHHH-HhcCHHHH
Confidence            444444 34444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.69  E-value=3.6e-16  Score=116.58  Aligned_cols=128  Identities=17%  Similarity=0.074  Sum_probs=114.5

Q ss_pred             hhhcchhhhhccchhhhhhccccc--------c-hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--------D-AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAV   92 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~   92 (199)
                      ...+|.++...|++++|+..+.++        . .+..+.++..+|.++...|++++|+..|++++.+.+      ....
T Consensus       144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  223 (378)
T 3q15_A          144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI  223 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            367899999999999999998887        1 345678899999999999999999999999998743      1246


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhh-----cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATE-----LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      ++.++|.++..+|++++|+.++++++.     .+|..+.++..+|.++..+|++++|+.++++++.+.
T Consensus       224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999     788889999999999999999999999999999874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.68  E-value=4.5e-16  Score=112.47  Aligned_cols=139  Identities=11%  Similarity=0.010  Sum_probs=95.9

Q ss_pred             hhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHHHHHHHHH----HHc--
Q 029105           36 AELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLHEQKAQVL----LEL--  104 (199)
Q Consensus        36 ~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~--  104 (199)
                      ...|.+ ++|+..+.++  .+|++..+|+..+.++...|  ++++++.++..++..+|.+..+|+..+.++    ...  
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence            344444 4667666666  66777777777777777776  777777777777777777777777777766    555  


Q ss_pred             -CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          105 -GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD--KAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       105 -~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                       +++++++..+.+++..+|.+..+|..++.+....|.++  ++++.+.+++..+|.+..+|.+.+.+...++.
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence             56777777777777777777777777777777777666  67777777777777777777766666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.8e-16  Score=109.28  Aligned_cols=141  Identities=13%  Similarity=-0.018  Sum_probs=124.2

Q ss_pred             hhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 029105           42 DDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG----DAWNALKAATRA  117 (199)
Q Consensus        42 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a  117 (199)
                      .+|+..|.++....++.+++.+|.++...+++++|+.+|+++++.  .++.+++++|.+|.. +    ++++|+.+|+++
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            356777777755678999999999999999999999999999875  679999999999988 7    899999999999


Q ss_pred             hhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH----Hhhhhhhhhhcccccc
Q 029105          118 TELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKP--DSEEARDDRQTALHL----VKRRKHLHLSGLSNDA  187 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~  187 (199)
                      +.  +.++.+++++|.+|..    .+++++|+.+|+++++..|  .++.++.+||.++..    .+++++|...+..+.+
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            54  6789999999999998    8999999999999999988  458999999999998    7788888877766544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.68  E-value=6.4e-16  Score=100.98  Aligned_cols=135  Identities=19%  Similarity=0.133  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW---  124 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  124 (199)
                      +..+.++..+|.++...|++++|+..+++++...+...      .++..+|.++...|++++|+..+++++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            34567888899999999999999999999888755432      578888999999999999999999988876542   


Q ss_pred             ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          125 ---AEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       125 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                         ..++..+|.++...|++++|+..+++++.+.+.      ...++..++.++...|++++|...+..+.+.
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence               567888899999999999999999988876322      2457888899999999998887766555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.68  E-value=1.5e-16  Score=121.64  Aligned_cols=119  Identities=13%  Similarity=0.008  Sum_probs=107.5

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhH---------------HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQL---------------ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      .++|..++..|+|++|+..|.++  ..|.+               ..+++++|.+++..|++++|+..|++++.++|+++
T Consensus       272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence            56799999999999999999988  44544               68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      .+++++|.++..+|++++|+..|+++++++|++..++..++.++..++++++|...
T Consensus       352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.67  E-value=2e-15  Score=93.82  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--cHHHHHHHHHHHHHHhhhhh
Q 029105          155 KPD--SEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       155 ~p~--~~~~~~~l~~~~~~~~~~~~  177 (199)
                      .|.  +......+...+..+++...
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~~~~~  107 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLAREDA  107 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhccccC
Confidence            884  45666777777777666544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.66  E-value=7.7e-16  Score=96.33  Aligned_cols=112  Identities=25%  Similarity=0.225  Sum_probs=104.7

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ...+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   91 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   91 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            356789999999999999999988  567778899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      ++++|+..+++++..+|+++.++..+|.++...|
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.66  E-value=6.9e-16  Score=95.64  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=101.7

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            56789999999999999999988  6778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      +++|+..+++++..+|+++.++..++.+..
T Consensus        88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           88 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999887753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=2.6e-15  Score=106.60  Aligned_cols=136  Identities=11%  Similarity=0.020  Sum_probs=119.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLEL  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~  104 (199)
                      ..++..+...|+|++|.+.|...  ..|.+. +.+.+|.+++..++|++|+..|++++...+..  ..+++++|.++..+
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            34567888999999999999888  678888 99999999999999999999999887753221  35899999999999


Q ss_pred             CCHHHHHHHHHHHhhcc--cc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105          105 GDAWNALKAATRATELE--QS-WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      |++++|+..|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999998654  65 6789999999999999999999999999999999 87766664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.66  E-value=1.9e-15  Score=109.26  Aligned_cols=152  Identities=10%  Similarity=-0.028  Sum_probs=141.3

Q ss_pred             hhcchhhhhcc--chhhhhhccccc--chhhHHHHHHHHhhHH----Hhc---ccHHHHHHHHHHHHccCCCcHHHHHHH
Q 029105           29 QEHGLSGAELE--KNDDNNEHQEPF--DAKQLALSFEAQGNNL----AED---GKFREALGKWEAALNLRPENAVLHEQK   97 (199)
Q Consensus        29 ~~~g~~~~~~~--~~~~A~~~~~~~--~~~~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~l   97 (199)
                      ...|.++...+  ++++++..+..+  .+|.+..+|...+.++    ...   +++++++.++.+++..+|.+..+|...
T Consensus        71 n~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R  150 (306)
T 3dra_A           71 IYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR  150 (306)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35578888888  999999999888  8899999999999999    666   789999999999999999999999999


Q ss_pred             HHHHHHcCCHH--HHHHHHHHHhhcccccHHHHHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105           98 AQVLLELGDAW--NALKAATRATELEQSWAEAWITLGRAQLNFGE------PDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus        98 a~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      +.+....|.++  ++++++.+++..+|.+..+|..++.+....+.      ++++++++.+++..+|.+..+|..++.++
T Consensus       151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll  230 (306)
T 3dra_A          151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIH  230 (306)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence            99999999999  99999999999999999999999999999988      99999999999999999999999999999


Q ss_pred             HHHhhhhhhhh
Q 029105          170 HLVKRRKHLHL  180 (199)
Q Consensus       170 ~~~~~~~~a~~  180 (199)
                      ...|+..++..
T Consensus       231 ~~~~~~~~~~~  241 (306)
T 3dra_A          231 ERFDRSITQLE  241 (306)
T ss_dssp             HHTTCCGGGGH
T ss_pred             HhcCCChHHHH
Confidence            99998666444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.2e-16  Score=98.50  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD  164 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  164 (199)
                      +..+..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777777776      667777


Q ss_pred             HHHHHHHHhhhhhhhhh
Q 029105          165 RQTALHLVKRRKHLHLS  181 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~  181 (199)
                      ++.++..+|+++++...
T Consensus        84 ~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHhHhhhHhH
Confidence            77777777776665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.65  E-value=4.3e-16  Score=95.77  Aligned_cols=102  Identities=12%  Similarity=0.253  Sum_probs=95.7

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHH
Q 029105           86 LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARD  163 (199)
Q Consensus        86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~  163 (199)
                      ++|+++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|.  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHH-hhhhhhhhhcccccc
Q 029105          164 DRQTALHLV-KRRKHLHLSGLSNDA  187 (199)
Q Consensus       164 ~l~~~~~~~-~~~~~a~~~~~~~~~  187 (199)
                      .++.++... |++++|.........
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            999999999 999998886655544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1.3e-15  Score=118.97  Aligned_cols=138  Identities=12%  Similarity=0.108  Sum_probs=128.6

Q ss_pred             hhhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105           35 GAELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVL  101 (199)
Q Consensus        35 ~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~  101 (199)
                      ....|++ ++|+..+.++  .+|++..+|+.++.++...|+          +++++.++++++..+|.+..+|...+.++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555 4678888888  889999999999999999988          99999999999999999999999999999


Q ss_pred             HHcC--CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          102 LELG--DAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       102 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ...+  +++++++.+.++++++|.+..+|..++.+....| .++++++++.++++.+|.+..+|...+.++..+
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999  7799999999999999999999999999999999 899999999999999999999999999999886

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.65  E-value=2.3e-15  Score=92.61  Aligned_cols=95  Identities=22%  Similarity=0.290  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWI  129 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~  129 (199)
                      .+..+..+|.+++..|++++|+..|++++.++|+++.++.++|.++..+|++++|+..+++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999998      89999


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 029105          130 TLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      .+|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999999888776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3e-15  Score=96.66  Aligned_cols=113  Identities=12%  Similarity=-0.034  Sum_probs=103.2

Q ss_pred             hHhhhcchhhhhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      .....+|..++..|++++|+..|.++  ..|.+   ..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            34467799999999999999999988  55655   88999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105          101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus       101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      +...|++++|+..+++++.++|++..++..++.+....
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A          109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999888876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=5.7e-16  Score=121.07  Aligned_cols=149  Identities=11%  Similarity=-0.029  Sum_probs=137.7

Q ss_pred             hhcchhhhhccc----------hhhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHH
Q 029105           29 QEHGLSGAELEK----------NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~----------~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~   94 (199)
                      ...|.++...|+          +++++..+..+  .+|.+..+|..++.++...+  ++++++..+.++++.+|.+..+|
T Consensus        67 ~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW  146 (567)
T 1dce_A           67 NCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW  146 (567)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH
Confidence            345777777777          89999999988  88999999999999999999  77999999999999999999999


Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCcH
Q 029105           95 EQKAQVLLELG-DAWNALKAATRATELEQSWAEAWITLGRAQLNF--------------GEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus        95 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~  159 (199)
                      ...+.+....| .++++++++.++++.+|.+..+|..+|.++..+              +.++++++++.+++.++|++.
T Consensus       147 ~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          147 DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence            99999999999 999999999999999999999999999998885              557999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 029105          160 EARDDRQTALHLVKRRKH  177 (199)
Q Consensus       160 ~~~~~l~~~~~~~~~~~~  177 (199)
                      .+|..++.++...+++++
T Consensus       227 saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          227 SAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHSCCCCCSC
T ss_pred             cHHHHHHHHHhcCCCccc
Confidence            999999999988887555

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.64  E-value=2.1e-16  Score=102.41  Aligned_cols=93  Identities=16%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccH----------HHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF----------REALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      ....+.+.+++|+..+..+  .+|.++.++..+|.++...+++          ++|+..|+++++++|++..+++++|.+
T Consensus        10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   89 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            3455667899999999988  8999999999999999999876          599999999999999999999999999


Q ss_pred             HHHcC-----------CHHHHHHHHHHHhhcccccH
Q 029105          101 LLELG-----------DAWNALKAATRATELEQSWA  125 (199)
Q Consensus       101 ~~~~~-----------~~~~A~~~~~~al~~~p~~~  125 (199)
                      |..+|           ++++|+.+|+++++++|++.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            99875           89999999999999999975

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.64  E-value=1.6e-15  Score=95.85  Aligned_cols=111  Identities=13%  Similarity=-0.016  Sum_probs=98.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHH---HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA---LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQV  100 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~  100 (199)
                      +.+|..++..|++++|+..|..+  ..|.++   .+++.+|.+++..|++++|+..|++++..+|++   +.+++.+|.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            56789999999999999999988  345444   899999999999999999999999999999999   8899999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105          101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus       101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      +..+|++++|+..+++++...|+++.+...+..+....+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999887776665554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.64  E-value=1.8e-15  Score=112.67  Aligned_cols=119  Identities=13%  Similarity=0.022  Sum_probs=110.7

Q ss_pred             hhcchhhhhccchhhhhhcccccc------------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFD------------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      ..+|..++..|++++|+..|.++.                  .|..+.++..+|.+++..|++++|+..++++++++|++
T Consensus       227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~  306 (370)
T 1ihg_A          227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  306 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence            567999999999999999998872                  45678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES  147 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  147 (199)
                      +.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus       307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.63  E-value=1.8e-15  Score=117.53  Aligned_cols=149  Identities=11%  Similarity=-0.019  Sum_probs=123.8

Q ss_pred             ccchh-------hhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCC
Q 029105           38 LEKND-------DNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGD  106 (199)
Q Consensus        38 ~~~~~-------~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~  106 (199)
                      .|+++       +|+..|.++   ..|.++.++..+|..+...|++++|...|++++...|.++ .+|..+|.++...|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  371 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  371 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence            57776       788888877   2588888999999999999999999999999999998875 689999998888899


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRA-QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      +++|...|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...+-.+
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            9999999999998888777776666654 345888999999999999999988999988888888888888877655444


Q ss_pred             c
Q 029105          186 D  186 (199)
Q Consensus       186 ~  186 (199)
                      .
T Consensus       452 l  452 (530)
T 2ooe_A          452 L  452 (530)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.63  E-value=1.4e-14  Score=105.43  Aligned_cols=137  Identities=13%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             hhccchh-hhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           36 AELEKND-DNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        36 ~~~~~~~-~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      ...|+++ +|+..+..+  .+|.+..+|+..+.++...+.          +++++.++..++..+|.+..+|...+.++.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            3456665 678888777  899999999999999988776          789999999999999999999999999999


Q ss_pred             HcCC--HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          103 ELGD--AWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       103 ~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ..++  +++++.++.+++..+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|.+++.++..+
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9994  8999999999999999999999999999999999 59999999999999999999999999999887

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.62  E-value=4.2e-15  Score=97.06  Aligned_cols=129  Identities=21%  Similarity=0.168  Sum_probs=111.0

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~   94 (199)
                      ..+|..+...|++++|+..+.++        .......++..+|.++...|++++|+..+++++.+.+..      ..++
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   92 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC   92 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            56789999999999999999887        222234688999999999999999999999999875543      5788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      ..+|.++...|++++|+..+++++...+      ....++..+|.++...|++++|+..+++++.+...
T Consensus        93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998743      33567899999999999999999999999987543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.62  E-value=8.5e-15  Score=86.80  Aligned_cols=83  Identities=30%  Similarity=0.417  Sum_probs=52.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                      ++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             HHH
Q 029105          170 HLV  172 (199)
Q Consensus       170 ~~~  172 (199)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.62  E-value=1.1e-14  Score=86.26  Aligned_cols=86  Identities=29%  Similarity=0.345  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +..+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC
Q 029105          134 AQLNFG  139 (199)
Q Consensus       134 ~~~~~~  139 (199)
                      ++..+|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            988765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.61  E-value=4.8e-15  Score=106.90  Aligned_cols=125  Identities=13%  Similarity=0.065  Sum_probs=107.0

Q ss_pred             hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-------CCCcHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-------RPENAVLH   94 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~~~~~~~~   94 (199)
                      .+|..+...+++++|+..+.++        .......++..+|.++...|++++|+.+|++++..       .+....++
T Consensus       120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            4688888889999999998877        11223568999999999999999999999999942       23335689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGE-PDKAIESFERALAI  154 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~  154 (199)
                      +++|.++..+|++++|+.++++++.+.+..      +.+++++|.++..+|+ +++|+..|++++.+
T Consensus       200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999987654      7899999999999995 69999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.60  E-value=1.2e-14  Score=113.00  Aligned_cols=160  Identities=9%  Similarity=-0.120  Sum_probs=137.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHH-HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA-LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV-LLEL  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~  104 (199)
                      ..+|..+...|++++|...|.++  ..|.++ .+|..+|..+.+.|++++|...|++++...|.....+...+.+ +...
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~  404 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  404 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence            45678888899999999999988  555543 6899999999999999999999999999999887777766655 3469


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHhhhhhhhh
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE----ARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~a~~  180 (199)
                      |++++|..+|+++++.+|+++.+|..++.++...|++++|...|++++...|.++.    +|..........|+.+.+..
T Consensus       405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~  484 (530)
T 2ooe_A          405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  484 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998776654    78888888888888888776


Q ss_pred             hcccccch
Q 029105          181 SGLSNDAN  188 (199)
Q Consensus       181 ~~~~~~~~  188 (199)
                      ....+.+.
T Consensus       485 ~~~r~~~~  492 (530)
T 2ooe_A          485 VEKRRFTA  492 (530)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.59  E-value=2.5e-14  Score=106.25  Aligned_cols=157  Identities=9%  Similarity=-0.021  Sum_probs=129.5

Q ss_pred             hhcchhhhhccchhhhhhccccc--ch-----hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DA-----KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHE   95 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~   95 (199)
                      ...|.++...|++++|+..+.++  ..     .....++..+|.++...|++++|...+++++.+.|..      ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            45578888899999999988776  11     1234578889999999999999999999999876543      24578


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cHHHH
Q 029105           96 QKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-----SEEAR  162 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~  162 (199)
                      ++|.++...|++++|+..+++++.+.        |....++..+|.++...|++++|+..+++++.+.|.     ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            89999999999999999999999875        345567888999999999999999999999998775     24678


Q ss_pred             HHHHHHHHHHhhhhhhhhhcccc
Q 029105          163 DDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ..++.++...|++++|.......
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            89999999999999987655433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.59  E-value=1.1e-14  Score=106.37  Aligned_cols=138  Identities=10%  Similarity=0.005  Sum_probs=128.4

Q ss_pred             hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-C-CHHHHH
Q 029105           37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLEL-G-DAWNAL  111 (199)
Q Consensus        37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~-~~~~A~  111 (199)
                      ..+..++|+..+.++  .+|.+..+|+.++.++...| .+++++.++.+++..+|.+..+|..++.++... + ++++++
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            344456788888888  88999999999999999999 599999999999999999999999999999998 8 999999


Q ss_pred             HHHHHHhhcccccHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          112 KAATRATELEQSWAEAWITLGRAQLNFGEPD--------KAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      ..+.+++..+|.+..+|..++.+....|.++        ++++.++++++.+|.|..+|.+.+.++..++.
T Consensus       146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999888        99999999999999999999999999988876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.58  E-value=1.2e-14  Score=98.67  Aligned_cols=131  Identities=18%  Similarity=0.115  Sum_probs=112.4

Q ss_pred             Hhhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc---CC----CcH
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL---RP----ENA   91 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~----~~~   91 (199)
                      ....+|.++...|++++|+..+.++        ..+..+.++..+|.++...|++++|+..+++++.+   .+    ...
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            3467799999999999999998877        45667889999999999999999999999999988   44    235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      .++.++|.++...|++++|+..+++++.+.+.      ...++..+|.++...|++++|+..+++++.+...
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999976432      2345689999999999999999999999987543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.58  E-value=3.2e-14  Score=109.55  Aligned_cols=155  Identities=11%  Similarity=-0.007  Sum_probs=113.8

Q ss_pred             hhhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHhc-----ccHHHHHHHHHHHHccCCCcHHHHHHHH
Q 029105           28 DQEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAED-----GKFREALGKWEAALNLRPENAVLHEQKA   98 (199)
Q Consensus        28 ~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~la   98 (199)
                      ...+|.++..    .+++++|+..|.++....++.+++.+|.++...     +++++|+.+|+++++.  .++.+++++|
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  335 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLG  335 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence            3456666666    677777777777774445566777777777776     7788888888877765  3566777888


Q ss_pred             HHHHHcC---CHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           99 QVLLELG---DAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        99 ~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      .++...|   ++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++.++|.++..
T Consensus       336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            8877755   677888888888776  567788888888887    78888888888888775  357788888888887


Q ss_pred             ----Hhhhhhhhhhcccccch
Q 029105          172 ----VKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       172 ----~~~~~~a~~~~~~~~~~  188 (199)
                          .+++++|...+..+.+.
T Consensus       412 g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          412 GLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHC
Confidence                67777777766555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.58  E-value=5.1e-14  Score=108.42  Aligned_cols=152  Identities=10%  Similarity=-0.062  Sum_probs=121.3

Q ss_pred             hhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105           29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQV  100 (199)
Q Consensus        29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~  100 (199)
                      ..+|..+..    .+++++|+..|.++....++.+++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.+
T Consensus        43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  120 (490)
T 2xm6_A           43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVM  120 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence            566777777    78888888888888555677888888988888    88889999999888765  467888888888


Q ss_pred             HHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Q 029105          101 LLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL-  171 (199)
Q Consensus       101 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-  171 (199)
                      +..    .+++++|+.+|+++...  +++.+++.+|.+|..    .+++++|+.+|+++++.  +++.++..+|.++.. 
T Consensus       121 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g  196 (490)
T 2xm6_A          121 YHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRG  196 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Confidence            888    78888888888888764  567888888888887    77888888888888775  567888888888887 


Q ss_pred             ---Hhhhhhhhhhccccc
Q 029105          172 ---VKRRKHLHLSGLSND  186 (199)
Q Consensus       172 ---~~~~~~a~~~~~~~~  186 (199)
                         .+++++|...+..+.
T Consensus       197 ~g~~~~~~~A~~~~~~a~  214 (490)
T 2xm6_A          197 LGVERNDAISAQWYRKSA  214 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence               677777776655443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.58  E-value=2.2e-14  Score=104.86  Aligned_cols=147  Identities=10%  Similarity=-0.043  Sum_probs=135.5

Q ss_pred             hhcchhhhhcc-chhhhhhccccc--chhhHHHHHHHHhhHHHhc-c-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELE-KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-G-KFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        29 ~~~g~~~~~~~-~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      ...|.++...| .+++++..+..+  .+|.+..+|..++.++... + ++++++.++.++++.+|.+..+|...+.+...
T Consensus        92 n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~  171 (349)
T 3q7a_A           92 QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH  171 (349)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34567777778 589999999888  8999999999999999988 7 89999999999999999999999999999999


Q ss_pred             cCCHH--------HHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          104 LGDAW--------NALKAATRATELEQSWAEAWITLGRAQLNFGE-------PDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       104 ~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      .|.++        ++++++.++++.+|.+..+|..++.++...+.       ++++++++.+++..+|++..+|..+.-+
T Consensus       172 l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          172 FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF  251 (349)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99888        99999999999999999999999999999987       6899999999999999999999999988


Q ss_pred             HHHHhhh
Q 029105          169 LHLVKRR  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +...|+.
T Consensus       252 l~~~~~~  258 (349)
T 3q7a_A          252 LKHFSLP  258 (349)
T ss_dssp             HHHTTCC
T ss_pred             HHhcCCC
Confidence            8887764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.57  E-value=2.6e-14  Score=104.05  Aligned_cols=132  Identities=11%  Similarity=-0.035  Sum_probs=119.9

Q ss_pred             hhhhhhccccc--chhhHHHHHHHHhhHHHhccc--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 029105           41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK--FREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAAT  115 (199)
Q Consensus        41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~  115 (199)
                      +++++..+..+  .+|.+..+|...+.++...++  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            57788887777  789999999999999999984  9999999999999999999999999999999999 699999999


Q ss_pred             HHhhcccccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          116 RATELEQSWAEAWITLGRAQLNF--------------GEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       116 ~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      +++..+|.+..+|..++.++...              +.++++++++.+++..+|++..+|..+.-++...
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999887              4588999999999999999999998665555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=2.2e-13  Score=98.21  Aligned_cols=137  Identities=16%  Similarity=0.050  Sum_probs=115.4

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW--  124 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--  124 (199)
                      .|.....+...+..++..|++++|+..+.+++...+...      ..+..+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            345566777889999999999999999999999877654      446778999999999999999999999865432  


Q ss_pred             ----HHHHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105          125 ----AEAWITLGRAQLNFGEPDKAIESFERAL---AIKPDSE----EARDDRQTALHLVKRRKHLHLSGLSNDANR  189 (199)
Q Consensus       125 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  189 (199)
                          ..++..+|.+|..+|++++|+.+|++++   ...|++.    .++.++|.++..+|++++|...+..+.+..
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                5689999999999999999999999999   4556543    689999999999999999998776665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=2.9e-15  Score=106.31  Aligned_cols=130  Identities=14%  Similarity=-0.053  Sum_probs=113.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-ccc-HHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QSW-AEAWITLGRA  134 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~lg~~  134 (199)
                      ..+...++.++...|++++|.+.|..++...|++. ..+.+|.++++.++|++|+..++.++... |.. ..+++.+|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            45666789999999999999999999999999988 99999999999999999999999887763 322 4589999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          135 QLNFGEPDKAIESFERALAIK--PD-SEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       135 ~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +..+|++++|+.+|++++.-.  |. .+.+++.+|.++..+|+.++|...+.....
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999999998654  55 678999999999999999999886654443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.57  E-value=5.2e-15  Score=93.33  Aligned_cols=110  Identities=13%  Similarity=0.060  Sum_probs=100.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKAQ   99 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~   99 (199)
                      ..+|..+...|++++|+..+.++  ..|.++.++..+|.++...|++++|+..+++++...|.+       +.++..+|.
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   87 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence            56789999999999999999988  667788999999999999999999999999999998877       889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG  139 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  139 (199)
                      ++...|++++|+..+++++...| ++..+..++.+....+
T Consensus        88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 5888888888776544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.56  E-value=4.3e-14  Score=85.65  Aligned_cols=89  Identities=18%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHH
Q 029105           86 LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARD  163 (199)
Q Consensus        86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~  163 (199)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++.+.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            367888888888888888888888888888888888888888888888888888888888888888887654  344555


Q ss_pred             HHHHHHHHHhh
Q 029105          164 DRQTALHLVKR  174 (199)
Q Consensus       164 ~l~~~~~~~~~  174 (199)
                      .+..++...+.
T Consensus        82 ~l~~~l~~~~~   92 (100)
T 3ma5_A           82 ELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHccc
Confidence            55555554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.56  E-value=2e-14  Score=109.75  Aligned_cols=150  Identities=16%  Similarity=0.052  Sum_probs=90.4

Q ss_pred             hhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhc----ccHHHHHHHHHHHHccCCCcHHHHHHHH
Q 029105           28 DQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED----GKFREALGKWEAALNLRPENAVLHEQKA   98 (199)
Q Consensus        28 ~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~la   98 (199)
                      ...+|.++...|   ++++|+..|.++  ..+..+..++.+|.+|...    +++++|+.+|+++.   |+++.+++++|
T Consensus       179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg  255 (452)
T 3e4b_A          179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLA  255 (452)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHH
T ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence            345566666666   666666666666  3444444456666666544    56666666666665   66666666666


Q ss_pred             HH-H--HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105           99 QV-L--LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-----EPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus        99 ~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      .+ +  ...+++++|+.+|++++..  +++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+..+||.+|.
T Consensus       256 ~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          256 QLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            66 3  3466666666666666643  35666666666665 44     6666666666666   666666666666665


Q ss_pred             H----Hhhhhhhhhhccccc
Q 029105          171 L----VKRRKHLHLSGLSND  186 (199)
Q Consensus       171 ~----~~~~~~a~~~~~~~~  186 (199)
                      .    ..++++|...+..+.
T Consensus       330 ~G~g~~~d~~~A~~~~~~Aa  349 (452)
T 3e4b_A          330 RGYLGKVYPQKALDHLLTAA  349 (452)
T ss_dssp             TTTTSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHH
Confidence            4    225555555444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.53  E-value=1.2e-13  Score=105.38  Aligned_cols=152  Identities=13%  Similarity=0.090  Sum_probs=125.2

Q ss_pred             hhcchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDG---KFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      +.+|.++...+.++++.......   ....++.+++.+|.++...|   ++++|+.+|+++....|..+..++++|.+|.
T Consensus       145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~  224 (452)
T 3e4b_A          145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG  224 (452)
T ss_dssp             HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45666777766665555542222   12233448999999999999   9999999999999999999999999999997


Q ss_pred             Hc----CCHHHHHHHHHHHhhcccccHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--
Q 029105          103 EL----GDAWNALKAATRATELEQSWAEAWITLGRA-Q--LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK--  173 (199)
Q Consensus       103 ~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--  173 (199)
                      ..    +++++|+.+|+++.   |+++.+++++|.+ +  ...+++++|+.+|+++...  +++.+..+||.+|. .|  
T Consensus       225 ~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g  298 (452)
T 3e4b_A          225 DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW  298 (452)
T ss_dssp             CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence            65    79999999999998   8999999999998 5  5789999999999999864  58999999999998 66  


Q ss_pred             ---hhhhhhhhccccc
Q 029105          174 ---RRKHLHLSGLSND  186 (199)
Q Consensus       174 ---~~~~a~~~~~~~~  186 (199)
                         ++++|...+..+.
T Consensus       299 ~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          299 VPADAKAAEAHFEKAV  314 (452)
T ss_dssp             SCCCHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence               8888887776655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.53  E-value=1.3e-14  Score=87.66  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAV-LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE  140 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  140 (199)
                      ..|.+++..|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|++++.++|+++.++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4455555555566666666655555555555 55555555555556666666665555555555554432        33


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 029105          141 PDKAIESFERALAIKPD  157 (199)
Q Consensus       141 ~~~A~~~~~~al~~~p~  157 (199)
                      +.+++..|++++..+|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            44445555544444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=3.8e-13  Score=99.82  Aligned_cols=157  Identities=16%  Similarity=0.018  Sum_probs=125.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CCcHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PENAV   92 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~   92 (199)
                      ..+|.++...|++++|+..+.++        .......++..+|.++...|++++|+..+++++...        |....
T Consensus        57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  136 (373)
T 1hz4_A           57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  136 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence            56788999999999999998887        112234567889999999999999999999999874        34457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CcH-HHHH-
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQS-----WAEAWITLGRAQLNFGEPDKAIESFERALAIKP--DSE-EARD-  163 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~-~~~~-  163 (199)
                      ++.++|.++...|++++|...+++++.+.+.     ...++..+|.++...|++++|+..+++++.+.+  ..+ .... 
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~  216 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  216 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence            7888999999999999999999999988664     356788999999999999999999999987733  222 2111 


Q ss_pred             ---HHHHHHHHHhhhhhhhhhcccc
Q 029105          164 ---DRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       164 ---~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                         .++.++...|++++|.......
T Consensus       217 ~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          217 ANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence               3445577889999887755443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.50  E-value=3e-13  Score=103.79  Aligned_cols=128  Identities=15%  Similarity=0.076  Sum_probs=107.8

Q ss_pred             HHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------cccc
Q 029105           61 EAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSW  124 (199)
Q Consensus        61 ~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~  124 (199)
                      ...+..+..+|+|++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+        +|+.
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455677899999999999999875     3444   478899999999999999999999999976        4556


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAI-----KPDSE---EARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ...+.++|.+|..+|++++|+..|++++.+     .|+++   +....++.++..++.+++|+..+..+.+.
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999976     46665   45678999999999999998877766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.49  E-value=2e-13  Score=82.70  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=73.7

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--HHHHHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW--AEAWIT  130 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  130 (199)
                      +|.++.+++.+|.+++..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++.+.|..  ......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999997753  344444


Q ss_pred             HHHHHHhc
Q 029105          131 LGRAQLNF  138 (199)
Q Consensus       131 lg~~~~~~  138 (199)
                      +...+...
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            44444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.47  E-value=2.3e-13  Score=84.39  Aligned_cols=95  Identities=23%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             hhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           43 DNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        43 ~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      +|+..|.++  ..|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445555555  578889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc--HHHHHHHHHHHHh
Q 029105          121 EQSW--AEAWITLGRAQLN  137 (199)
Q Consensus       121 ~p~~--~~~~~~lg~~~~~  137 (199)
                      .|..  ......+...+..
T Consensus        83 ~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHH
Confidence            8853  3444444444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.46  E-value=6.6e-13  Score=85.20  Aligned_cols=120  Identities=13%  Similarity=0.029  Sum_probs=99.0

Q ss_pred             cchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q 029105           39 EKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDAWNALKAA  114 (199)
Q Consensus        39 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~  114 (199)
                      +++++|+..|.++....++.+.  +|.++...+..++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            4678888888888333344444  899999989999999999999886  678999999999998    89999999999


Q ss_pred             HHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105          115 TRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      +++.+.  .++.+.+++|.+|..    .+++++|+.+|+++.+..  ++.+..+|+
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            999876  678899999999999    899999999999998874  455555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.45  E-value=1.4e-12  Score=93.71  Aligned_cols=143  Identities=8%  Similarity=-0.109  Sum_probs=87.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--ch--hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----cHHHHHHH--H
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DA--KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE----NAVLHEQK--A   98 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~l--a   98 (199)
                      ..+|.++...|++++|+..+.+.  ..  +...++....+.++...|+.+.|.+.++++.+.+|+    +......+  |
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            34566666677777777766665  22  256666667777777777777777777776666662    12222333  3


Q ss_pred             HHHHHcC--CHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CCCcHHHHHH
Q 029105           99 QVLLELG--DAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAI----------KPDSEEARDD  164 (199)
Q Consensus        99 ~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~  164 (199)
                      .+....|  ++.+|...|+++....|+  .+..+++   ++..+|++++|...++.+++.          +|+++.++.+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence            3344445  677777777776666665  2223333   666777777777777666554          3667777766


Q ss_pred             HHHHHHHHhh
Q 029105          165 RQTALHLVKR  174 (199)
Q Consensus       165 l~~~~~~~~~  174 (199)
                      ++.+...+|+
T Consensus       261 ~i~l~~~lgk  270 (310)
T 3mv2_B          261 QITLALMQGL  270 (310)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCh
Confidence            6666666665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.44  E-value=6.4e-13  Score=101.94  Aligned_cols=123  Identities=5%  Similarity=-0.126  Sum_probs=105.8

Q ss_pred             chhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHH
Q 029105           32 GLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVL   93 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~   93 (199)
                      +..+...|+|++|+..+.++          .+|....++.++|.+|..+|+|++|+.++++++.+     .|++   ...
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34466789999999888766          67788899999999999999999999999999865     3444   578


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                      +.++|.+|..+|++++|+..+++++.+        +|.......+++.++..++.+++|...|.++.+.
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999976        3555567789999999999999999999988654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.42  E-value=3.5e-12  Score=76.70  Aligned_cols=77  Identities=25%  Similarity=0.357  Sum_probs=69.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQSWAE-AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR--DDRQTALHL  171 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~  171 (199)
                      +.+|.++...|++++|+..+++++..+|+++. +++.+|.++..+|++++|+..|++++.++|+++.++  ..++.++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~   83 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF   83 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999 999999999999999999999999999999999887  444444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=1.7e-11  Score=78.58  Aligned_cols=102  Identities=11%  Similarity=0.064  Sum_probs=90.7

Q ss_pred             ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcc-c-ccHHHHHHHHHHHHhcCChHHHH
Q 029105           71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELG---DAWNALKAATRATELE-Q-SWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      +....+.+.|.+.+..+|.+..+.+++|.++.+.+   +.++++..++.+++.+ | ++.+++|++|..++++|+|++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34566778888888888999999999999999988   6779999999999998 7 67899999999999999999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105          146 ESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      .+++++++++|++..+......+....
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887777666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.36  E-value=2.6e-11  Score=87.25  Aligned_cols=137  Identities=12%  Similarity=-0.006  Sum_probs=109.4

Q ss_pred             hhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105           44 NNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--ENAVLHEQKAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        44 A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      |+..+++.  ..+....++..+|.++...|++++|+.++.+++..+|  ++..++..++.++..+|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555544  2223355567999999999999999999999999987  8899999999999999999999999999999


Q ss_pred             cccc----cHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          120 LEQS----WAEAWITL--GRAQLNFG--EPDKAIESFERALAIKPD--SEEARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       120 ~~p~----~~~~~~~l--g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      .+|+    +-.....+  |.+....|  ++++|...|+++....|+  .+..+.+   ++..+|++++|.....
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence            9983    22334444  44466666  999999999999888887  3344444   8999999999988764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.35  E-value=5.6e-12  Score=95.22  Aligned_cols=157  Identities=10%  Similarity=-0.009  Sum_probs=114.4

Q ss_pred             hcchhhhhccchhhhhhccccc-------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF-------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      +.|..+...|+|++|++.|..+                   ..+....++..+|.+|...|++++|++.+.+++...+..
T Consensus         9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~   88 (434)
T 4b4t_Q            9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF   88 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            4567777888888888877655                   112334567888888888888888888888887765443


Q ss_pred             H------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 029105           91 A------VLHEQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAI----  154 (199)
Q Consensus        91 ~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----  154 (199)
                      .      .+...+|.++...|+++.|+..+++++...+      ....++..+|.++...|++++|+..+++++..    
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~  168 (434)
T 4b4t_Q           89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL  168 (434)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence            2      3456677777778888888888888877643      23567788888888888888888888887765    


Q ss_pred             --CCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          155 --KPDSEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       155 --~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                        .+....++..++.++...|++++|...+..+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence              23345678888888888888888776654443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.35  E-value=2.4e-11  Score=72.27  Aligned_cols=73  Identities=16%  Similarity=0.026  Sum_probs=64.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105           87 RPENAVLHEQKAQVLLELGD---AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE  159 (199)
Q Consensus        87 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  159 (199)
                      +|+++.++..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68889999999999987666   78999999999999999999999999999999999999999999999988843

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.34  E-value=1.3e-11  Score=92.55  Aligned_cols=144  Identities=11%  Similarity=-0.014  Sum_probs=92.7

Q ss_pred             hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      ..+|..++..|.|++|...|..+      ..+..+|.++.+.|++++|++.++++     +++..|...+.++...|+++
T Consensus       126 ~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          126 QQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             -----------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence            44566666666666666666533      34556666666666666666666666     34566666666666666666


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--Hhhhhhhhhhccccc
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL--VKRRKHLHLSGLSND  186 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~  186 (199)
                      .|..+... +..+|++   ...+..+|...|++++|+..+++++.+++.+..++..++.++.+  .++..+..+.++++.
T Consensus       195 lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i  270 (449)
T 1b89_A          195 LAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV  270 (449)
T ss_dssp             HHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            66555554 2244544   33577889999999999999999999999999999999988875  456666666666554


Q ss_pred             c
Q 029105          187 A  187 (199)
Q Consensus       187 ~  187 (199)
                      .
T Consensus       271 n  271 (449)
T 1b89_A          271 N  271 (449)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.33  E-value=6.4e-12  Score=94.87  Aligned_cols=163  Identities=10%  Similarity=-0.063  Sum_probs=131.5

Q ss_pred             hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAVL   93 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~   93 (199)
                      ..++|.++...|++++|+..+..+        .......+...++.++...|++++|+..+++++...+      ....+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            357899999999999999998877        1122344666788888899999999999999887532      33678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhc------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc----HH
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATEL------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP---DS----EE  160 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~----~~  160 (199)
                      +..+|.++...|+|++|+..+++++..      .+....++..+|.+|..+|++++|...+++++...+   ..    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            999999999999999999999999876      345677899999999999999999999999997743   22    34


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105          161 ARDDRQTALHLVKRRKHLHLSGLSNDANRF  190 (199)
Q Consensus       161 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  190 (199)
                      .+..+|.++...+++.+|...+...++..-
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            567778888888889998887766655433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.33  E-value=2.1e-11  Score=101.90  Aligned_cols=142  Identities=10%  Similarity=-0.018  Sum_probs=104.8

Q ss_pred             cchhhhhccchhhhhhccccc------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105           31 HGLSGAELEKNDDNNEHQEPF------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL   86 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   86 (199)
                      .|.++...|.+++|...|+++                        ...+.+.+|+.+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            467777777777777766665                        12234667888888888889999999888775   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---------------------------cHHHHHHHHHHHHhcC
Q 029105           87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS---------------------------WAEAWITLGRAQLNFG  139 (199)
Q Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~~~lg~~~~~~~  139 (199)
                        +++..+...|.++.+.|+|++|++++..+....++                           +...+..+|..+...|
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence              67888888888888899999888888776654422                           2234567788888888


Q ss_pred             ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++|..+|.++        ..|..++.++..+|++++|...+..+
T Consensus      1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            888888888775        46777777888888777777666433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.31  E-value=1.9e-12  Score=97.08  Aligned_cols=79  Identities=15%  Similarity=0.059  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..|..+|..++..|.|++|..+|.++        ..|..+|.++..+|++++|++.++++     .++.+|..+..++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            46677777777777777777777766        35677777777778888787777777     356777777777777


Q ss_pred             Hhhhhhhhhhcc
Q 029105          172 VKRRKHLHLSGL  183 (199)
Q Consensus       172 ~~~~~~a~~~~~  183 (199)
                      .|+++.|....+
T Consensus       190 ~~ef~lA~~~~l  201 (449)
T 1b89_A          190 GKEFRLAQMCGL  201 (449)
T ss_dssp             TTCHHHHHHTTT
T ss_pred             cCcHHHHHHHHH
Confidence            777777655444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.30  E-value=3.3e-11  Score=77.20  Aligned_cols=111  Identities=14%  Similarity=0.023  Sum_probs=97.8

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAI  145 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~  145 (199)
                      .+++++|+.+|+++.+.......    +|.+|...+.+++|+.+|+++.+.  .++.+.+++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            35789999999999988754443    999999999999999999999987  778999999999998    89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH----Hhhhhhhhhhcccccch
Q 029105          146 ESFERALAIKPDSEEARDDRQTALHL----VKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       146 ~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  188 (199)
                      .+|+++.+.  .++.+..+|+.+|..    .+++++|...+..+.+.
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999999986  679999999999999    88999988877766553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.26  E-value=1.5e-10  Score=96.93  Aligned_cols=141  Identities=12%  Similarity=0.009  Sum_probs=114.5

Q ss_pred             hHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----------------
Q 029105           26 QQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE----------------   89 (199)
Q Consensus        26 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----------------   89 (199)
                      ...+++|..+...|++++|+..|.++   +++..+..+|.++.+.|+|++|+++|..+....++                
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence            34468899999999999999999886   45667888999999999999999999887655432                


Q ss_pred             -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105           90 -----------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus        90 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                                 +...+..+|..+...|+|++|+.+|.++        ..|..+|.++..+|++++|++.++++     .+
T Consensus      1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n 1249 (1630)
T 1xi4_A         1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS 1249 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC
Confidence                       1234567999999999999999999986        47899999999999999999999998     44


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          159 EEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       159 ~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      ..+|...+.++...|++..|....
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHH
Confidence            566776666666666666665544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.26  E-value=1.1e-10  Score=88.36  Aligned_cols=114  Identities=17%  Similarity=0.096  Sum_probs=92.4

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccc
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQS  123 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~  123 (199)
                      .......+..+|++++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+        +|.
T Consensus       290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~  369 (429)
T 3qwp_A          290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV  369 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence            334445567889999999999999975     3444   478899999999999999999999999976        455


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHHh
Q 029105          124 WAEAWITLGRAQLNFGEPDKAIESFERALAI-----KPDSEE---ARDDRQTALHLVK  173 (199)
Q Consensus       124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~  173 (199)
                      ....++++|.+|..+|++++|+..|++++++     .|+++.   +..+|+.+...++
T Consensus       370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            6678999999999999999999999999976     566665   4556666665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.24  E-value=2.3e-10  Score=69.58  Aligned_cols=78  Identities=17%  Similarity=0.072  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD  163 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  163 (199)
                      +.-.+.+|..++..|+|..|+.+++.|+...       +..+.++..+|.++..+|+++.|+..+++++.++|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3445677777777777777777777777653       235667778888888888888888888888888888877777


Q ss_pred             HHHHH
Q 029105          164 DRQTA  168 (199)
Q Consensus       164 ~l~~~  168 (199)
                      +++..
T Consensus        85 n~~~~   89 (104)
T 2v5f_A           85 NLKYF   89 (104)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            77633

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.21  E-value=3.4e-10  Score=85.64  Aligned_cols=95  Identities=21%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             HhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHH
Q 029105           68 AEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITL  131 (199)
Q Consensus        68 ~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l  131 (199)
                      ...|+|++|+..+++++++     .|++   ...+.++|.+|..+|+|++|+.++++++.+        +|+-...+.++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4568899999999999874     4555   467899999999999999999999999976        45666789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhc-----CCCcHHHH
Q 029105          132 GRAQLNFGEPDKAIESFERALAI-----KPDSEEAR  162 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~  162 (199)
                      |.+|..+|++++|+..|++++.+     .|+++.+.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            99999999999999999999986     57777543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.19  E-value=3.8e-10  Score=68.60  Aligned_cols=77  Identities=17%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLR-------PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      ++..++.+|..++..|+|..|+.+|++++...       +..+.++..+|.+++++|+++.|+..+++++.++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35678899999999999999999999999863       34578999999999999999999999999999999999998


Q ss_pred             HHHH
Q 029105          129 ITLG  132 (199)
Q Consensus       129 ~~lg  132 (199)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            8887

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.19  E-value=8.4e-11  Score=69.89  Aligned_cols=72  Identities=18%  Similarity=-0.024  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHhhHHHhccc---HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105           53 AKQLALSFEAQGNNLAEDGK---FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW  124 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  124 (199)
                      +|.++.++..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            57789999999999987666   7999999999999999999999999999999999999999999999999874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.17  E-value=3e-10  Score=83.27  Aligned_cols=135  Identities=13%  Similarity=0.080  Sum_probs=85.9

Q ss_pred             chHhhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhcccH-------HHHHH-HHH--HHHccCCC
Q 029105           25 DQQDQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF-------REALG-KWE--AALNLRPE   89 (199)
Q Consensus        25 ~~~~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~A~~-~~~--~~l~~~~~   89 (199)
                      ....+-.|..+...+   ...+|+..|+++  .+|+.+.++..++.++.....+       ..++. .+.  .++..+|.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            333444455555433   346677777777  6777777777666666422111       11111 111  12355677


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105           90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      ++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            7777777777777778888888888888888764 556777788888888888888888888888887653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.06  E-value=3.3e-09  Score=77.80  Aligned_cols=129  Identities=11%  Similarity=-0.007  Sum_probs=100.1

Q ss_pred             HHHHHHhhHHHhc---ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH-------HHHH-HHHH--HHhhccccc
Q 029105           58 LSFEAQGNNLAED---GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA-------WNAL-KAAT--RATELEQSW  124 (199)
Q Consensus        58 ~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al~~~p~~  124 (199)
                      .-++..|..++..   ..+.+|+.+|+++++++|+++.++..++.++.....+       ..++ ..++  .++..+|.+
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~  276 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence            3445566666654   4568999999999999999999999888888632111       1111 1111  234567899


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      +.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|++++|...+..++.
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999975 67889999999999999999987765544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=7.2e-10  Score=71.08  Aligned_cols=83  Identities=14%  Similarity=-0.102  Sum_probs=74.1

Q ss_pred             hhhHHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH
Q 029105           53 AKQLALSFEAQGNNLAEDG---KFREALGKWEAALNLR-P-ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA  127 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  127 (199)
                      .+.+.++.+.+|.++.+.+   ++.+++..++.+++.+ | .+.++++++|..+++.|+|++|+.+++++++++|++..+
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            4567889999999999988   7779999999999998 7 568999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 029105          128 WITLGRAQ  135 (199)
Q Consensus       128 ~~~lg~~~  135 (199)
                      ....-.+-
T Consensus       108 ~~Lk~~ie  115 (152)
T 1pc2_A          108 KELERLID  115 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77655443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.05  E-value=7.3e-10  Score=83.86  Aligned_cols=105  Identities=12%  Similarity=-0.008  Sum_probs=84.2

Q ss_pred             hhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHH
Q 029105           34 SGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHE   95 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~   95 (199)
                      .+...|+|++|+..+.++          .+|....++.++|.+|..+|+|++|+.++++++.+     .|++   ...++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            345678888888877654          67778889999999999999999999999999865     3444   47789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhc-----cccc---HHHHHHHHHHHHhc
Q 029105           96 QKAQVLLELGDAWNALKAATRATEL-----EQSW---AEAWITLGRAQLNF  138 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~  138 (199)
                      ++|.+|..+|++++|+..+++++.+     -|++   ..+..+++.+...+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987     2444   44556677666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.03  E-value=9e-09  Score=72.78  Aligned_cols=107  Identities=20%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             chhhHHHHHHHHhhHHHh-----c------ccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAE-----D------GKFREALGKWEAALNLRPE--NAVLHEQKAQVLLEL-----GDAWNALKA  113 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~-----~------~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~  113 (199)
                      ..|.++..++-.|.+...     .      +....|...++++++++|+  +..+|..+|.+|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            345666666655554422     1      3457899999999999999  677999999999995     999999999


Q ss_pred             HHHHhhccccc-HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCc
Q 029105          114 ATRATELEQSW-AEAWITLGRAQLN-FGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       114 ~~~al~~~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~  158 (199)
                      |+++++++|+. ..+++..|..+.. .|++++|...+++++..+|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 599999999999999998874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.01  E-value=1.2e-09  Score=82.60  Aligned_cols=92  Identities=10%  Similarity=-0.041  Sum_probs=77.7

Q ss_pred             hhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHH
Q 029105           36 AELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQK   97 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~l   97 (199)
                      ...|+|++|+..+.++          .+|....++.++|.+|..+|+|++|+.++++++.+     .|++   ...++++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3467888888887765          67788889999999999999999999999999965     3444   5778999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhc-----ccccHHH
Q 029105           98 AQVLLELGDAWNALKAATRATEL-----EQSWAEA  127 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  127 (199)
                      |.+|..+|++++|+..+++|+.+     .|++|..
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            99999999999999999999987     3555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.98  E-value=4.3e-08  Score=60.70  Aligned_cols=102  Identities=10%  Similarity=0.023  Sum_probs=86.6

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcc-c-ccHHHHHHHHHHHHhcCChHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN---ALKAATRATELE-Q-SWAEAWITLGRAQLNFGEPDKA  144 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A  144 (199)
                      ......+...|.+.+..++....+.+++|.++.+......   ++..++..+..+ | ..-+.++.+|..++++|+|++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3445667777888777788889999999999999887766   999999999987 6 5778999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105          145 IESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus       145 ~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..+++.+++.+|++.++......+..+
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~  120 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLIDKA  120 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999987766655544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.92  E-value=1e-08  Score=81.68  Aligned_cols=155  Identities=9%  Similarity=-0.038  Sum_probs=106.4

Q ss_pred             chhhhhccchhhhh-hccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-----------CC--------
Q 029105           32 GLSGAELEKNDDNN-EHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR-----------PE--------   89 (199)
Q Consensus        32 g~~~~~~~~~~~A~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------~~--------   89 (199)
                      +..+...|+.++|. ..+.++  ..|.....+...+......|+++.|...|++++...           |.        
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~  429 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL  429 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence            33444556666665 666666  446666677777777777788888888888777642           32        


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105           90 ---NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus        90 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                         ...+|...+.+..+.|..+.|...|.+|+.. .+.....|...|.+....+ +++.|...|+.+++..|+++..+..
T Consensus       430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence               2346777777777777788888888888776 3344566666666665554 4788888888888888888888777


Q ss_pred             HHHHHHHHhhhhhhhhhccccc
Q 029105          165 RQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      .+......|+.+.|...+-.+.
T Consensus       510 y~~fe~~~~~~~~AR~lferal  531 (679)
T 4e6h_A          510 YLDFLIYVNEESQVKSLFESSI  531 (679)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHH
Confidence            7777777777777665554433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.79  E-value=5.8e-08  Score=77.41  Aligned_cols=152  Identities=9%  Similarity=-0.083  Sum_probs=124.1

Q ss_pred             cchhhhhccchhhhhhcccccch-------------h-----------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105           31 HGLSGAELEKNDDNNEHQEPFDA-------------K-----------QLALSFEAQGNNLAEDGKFREALGKWEAALNL   86 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~~~-------------~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   86 (199)
                      .+......|+++.|...|.++..             |           ....+|...+....+.|+.+.|...|.+++..
T Consensus       384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666678889888888887721             2           24457888888888999999999999999987


Q ss_pred             -CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---cHHH
Q 029105           87 -RPENAVLHEQKAQVLLELGD-AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD---SEEA  161 (199)
Q Consensus        87 -~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~  161 (199)
                       .+....+|...+.+....++ ++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+   ...+
T Consensus       464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~l  543 (679)
T 4e6h_A          464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMI  543 (679)
T ss_dssp             GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             44556777777877777654 999999999999999999999999999999999999999999999999883   5567


Q ss_pred             HHHHHHHHHHHhhhhhhhhhc
Q 029105          162 RDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       162 ~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      |..........|..+.+....
T Consensus       544 w~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          544 FQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            777777777778777665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.67  E-value=1.3e-07  Score=66.87  Aligned_cols=102  Identities=16%  Similarity=0.031  Sum_probs=84.3

Q ss_pred             ccCCCcHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhc-----CChHHHHH
Q 029105           85 NLRPENAVLHEQKAQVLLE---L--GD------AWNALKAATRATELEQS--WAEAWITLGRAQLNF-----GEPDKAIE  146 (199)
Q Consensus        85 ~~~~~~~~~~~~la~~~~~---~--~~------~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----~~~~~A~~  146 (199)
                      ..+|+++..++..|.....   .  |.      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            3467778888888877654   2  32      57889999999999999  677999999999995     99999999


Q ss_pred             HHHHHHhcCCCc-HHHHHHHHHHHHHH-hhhhhhhhhccccc
Q 029105          147 SFERALAIKPDS-EEARDDRQTALHLV-KRRKHLHLSGLSND  186 (199)
Q Consensus       147 ~~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~  186 (199)
                      +|+++++++|+. ...+...|..+... |+++++......+.
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999975 99999999998874 88888776554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.60  E-value=6.9e-07  Score=57.73  Aligned_cols=112  Identities=15%  Similarity=0.050  Sum_probs=77.2

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------AVLHEQKAQVLLELGDAWNALKAATRATELEQ-----  122 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----  122 (199)
                      ..++......++..|.|+.|+.....++.+..++         ..++..+|..++..++|..|...|++++....     
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455666677778888888888877766554322         24778888888888888888888888775421     


Q ss_pred             --------------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105          123 --------------------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL  169 (199)
Q Consensus       123 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  169 (199)
                                          .+.+..+.++.||..++++++|+..++.+ -.....+.+...||..|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                                12257788888888899988888877643 22233466666666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.52  E-value=2e-06  Score=54.57  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=94.2

Q ss_pred             chhhHHHHHHHHhhHHHhcccH------HHHHHHHHHHHccCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKF------REALGKWEAALNLRPEN--------AVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~l~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ..|.+++.|..........|+.      +.-++.|++++..-|..        ..+|...|.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4678889999999998888998      88899999999887754        3667777765 5679999999999999


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      +.++...+..|...|..-.++|+...|.+.+.+++...|...+.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            99888899999999999999999999999999999999987654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.51  E-value=7.8e-07  Score=55.05  Aligned_cols=81  Identities=14%  Similarity=-0.154  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHhhHHHhcccHHH---HHHHHHHHHccC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFRE---ALGKWEAALNLR-P-ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW  128 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  128 (199)
                      +....+.+.+|.++.+..+...   ++..++..+..+ | ..-.+++.+|..+++.|+|++|..+++.++++.|++.++.
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            3567889999999998887766   999999999887 5 4678999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 029105          129 ITLGRA  134 (199)
Q Consensus       129 ~~lg~~  134 (199)
                      .....+
T Consensus       112 ~Lk~~i  117 (126)
T 1nzn_A          112 ELERLI  117 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.50  E-value=1.1e-05  Score=50.14  Aligned_cols=83  Identities=12%  Similarity=0.019  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhccc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105           90 NAVLHEQKAQVLLELGDA---WNALKAATRATELEQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus        90 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      .+...+++|.++.+..+.   .+++..++..++.+| ..-+.++.+|..+.++|+|++|..+.+.+++..|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            457777888777776654   467888888887777 3567788888888888888888888888888888888876666


Q ss_pred             HHHHHHH
Q 029105          166 QTALHLV  172 (199)
Q Consensus       166 ~~~~~~~  172 (199)
                      ..+..++
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.48  E-value=8.5e-06  Score=63.00  Aligned_cols=148  Identities=7%  Similarity=-0.056  Sum_probs=113.9

Q ss_pred             hhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHh---------cccHHHHHHHHHHHHccC-CCcHHHHHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAE---------DGKFREALGKWEAALNLR-PENAVLHEQKA   98 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~l~~~-~~~~~~~~~la   98 (199)
                      ..+.+.|+.++|+..|...    ..|+ ...+..+-.++..         .+..+.|.+.|++..... +.+...+..+-
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI  112 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA  112 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            5667889999999999877    3333 3344444444433         345788999999876543 23567788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhh
Q 029105           99 QVLLELGDAWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus        99 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~  175 (199)
                      ..+.+.|++++|...+++....  .| +...|..+-..|...|+.++|...|++..... .-+...+..+..++.+.|+.
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~  191 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA  191 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence            9999999999999999988765  34 46678888889999999999999999988764 22467788899999999999


Q ss_pred             hhhhhhc
Q 029105          176 KHLHLSG  182 (199)
Q Consensus       176 ~~a~~~~  182 (199)
                      ++|....
T Consensus       192 d~A~~ll  198 (501)
T 4g26_A          192 DKVYKTL  198 (501)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987644

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.46  E-value=3.3e-06  Score=53.14  Aligned_cols=83  Identities=12%  Similarity=0.006  Sum_probs=55.9

Q ss_pred             CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhccc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105           89 ENAVLHEQKAQVLLELGDA---WNALKAATRATELEQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus        89 ~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                      -.+...+++|.++.+..+.   .+++..++..+..+| ..-+.++.+|..++++|+|++|..+.+.+++.+|++.++...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3456667777777765543   456777777777666 355667777777777777777777777777777777776655


Q ss_pred             HHHHHHH
Q 029105          165 RQTALHL  171 (199)
Q Consensus       165 l~~~~~~  171 (199)
                      ...+..+
T Consensus       117 k~~Ie~~  123 (144)
T 1y8m_A          117 KSMVEDK  123 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.43  E-value=2.8e-05  Score=48.92  Aligned_cols=82  Identities=10%  Similarity=-0.115  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHhhHHHhcccH---HHHHHHHHHHHccCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKF---REALGKWEAALNLRPE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWI  129 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  129 (199)
                      ...+++.+.+|.++....+.   .+++..++..+...|. .-++++.+|..+++.|+|++|..+++.+++..|++.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            44678899999999887654   5799999999998884 5689999999999999999999999999999999998876


Q ss_pred             HHHHHH
Q 029105          130 TLGRAQ  135 (199)
Q Consensus       130 ~lg~~~  135 (199)
                      ....+-
T Consensus       116 Lk~~Ie  121 (144)
T 1y8m_A          116 LKSMVE  121 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.40  E-value=6.6e-06  Score=63.48  Aligned_cols=133  Identities=12%  Similarity=-0.016  Sum_probs=100.0

Q ss_pred             hccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-----------------------
Q 029105           46 EHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV-----------------------  100 (199)
Q Consensus        46 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-----------------------  100 (199)
                      ..|+++  ..|..+..|...+..+...|+.+.|...|++++.. |.+...+...+..                       
T Consensus       200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~  278 (493)
T 2uy1_A          200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE  278 (493)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence            344444  34677889999999999999999999999999999 8876555444332                       


Q ss_pred             -----------------HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHH
Q 029105          101 -----------------LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       101 -----------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                                       ..+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|...|+.+++..|+.+..+
T Consensus       279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~  357 (493)
T 2uy1_A          279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK  357 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence                             22456788888999999 433335567776676666655 69999999999999999988887


Q ss_pred             HHHHHHHHHHhhhhhhhh
Q 029105          163 DDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       163 ~~l~~~~~~~~~~~~a~~  180 (199)
                      ...+......|+.+.+..
T Consensus       358 ~~yid~e~~~~~~~~aR~  375 (493)
T 2uy1_A          358 EEFFLFLLRIGDEENARA  375 (493)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            777777777777776553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.30  E-value=1.2e-05  Score=50.04  Aligned_cols=80  Identities=10%  Similarity=-0.118  Sum_probs=68.5

Q ss_pred             HHHHHHHHhhHHHhcccH---HHHHHHHHHHHccCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKF---REALGKWEAALNLRPE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .+.+.+.+|.++.+..+.   ..++..++..+..+|. .-++++.+|..+++.|+|+.|..+.+.++++.|++..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            467888899888887654   5799999999998884 479999999999999999999999999999999999887665


Q ss_pred             HHHH
Q 029105          132 GRAQ  135 (199)
Q Consensus       132 g~~~  135 (199)
                      ..+-
T Consensus       119 ~~Ie  122 (134)
T 3o48_A          119 SMVE  122 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.02  E-value=4.8e-05  Score=49.21  Aligned_cols=91  Identities=12%  Similarity=0.027  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH---------HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C---
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWA---------EAWITLGRAQLNFGEPDKAIESFERALAIK---P---  156 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p---  156 (199)
                      .+++.-...++..|.|+.|+-....++.+..+++         .++..+|.+++..++|..|...|++++...   +   
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4456667778899999999999999887754433         378899999999999999999999987542   1   


Q ss_pred             -------------------CcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          157 -------------------DSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       157 -------------------~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                                         .+.+..+.++.|+..++++++|....
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L  145 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL  145 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence                               11268899999999999999987643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.98  E-value=0.00023  Score=54.99  Aligned_cols=124  Identities=8%  Similarity=-0.118  Sum_probs=96.4

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-DAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      ..+|...+....+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|..+|+.++...|+.+..|...+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            355666777777788899999999999 433335567777777776666 699999999999999999998888888888


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ...|+.+.|...|+++    +.....|......-...|+.+.+...+-.+
T Consensus       365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8999999999999998    346777777777777777766655434333

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.87  E-value=0.00023  Score=55.02  Aligned_cols=129  Identities=9%  Similarity=-0.008  Sum_probs=99.0

Q ss_pred             cchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105           39 EKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKA  113 (199)
Q Consensus        39 ~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  113 (199)
                      +..++|...|...    ..| +...+..+...+.+.|++++|...|++..... ..+...|..+-..+.+.|++++|...
T Consensus        84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            3456677776654    333 45678889999999999999999999987652 23567788888899999999999999


Q ss_pred             HHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Q 029105          114 ATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALH  170 (199)
Q Consensus       114 ~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~  170 (199)
                      +++....  .| +...+..+-.++...|+.++|...+++..+.  .|+ ..++..+...+.
T Consensus       163 ~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~  221 (501)
T 4g26_A          163 DAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence            9998865  34 4667888999999999999999999988764  354 444444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.83  E-value=0.00023  Score=45.25  Aligned_cols=100  Identities=13%  Similarity=-0.072  Sum_probs=81.9

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105           85 NLRPENAVLHEQKAQVLLELGDA------WNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus        85 ~~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      -+.|++++.|..........|+.      ++-++.|++|+..-|-        +...|...|.. ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            35799999999999999888999      8999999999987663        45567777755 567999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          151 ALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       151 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++.+....+.+|...|....+.|+...|....-.+
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~A  120 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKA  120 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            99998888889999999999999998887654433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.73  E-value=0.00043  Score=53.30  Aligned_cols=81  Identities=17%  Similarity=0.052  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      .++..+|.+......++.|..+|.+|+.+.|+++..+..+|.+....|+.-+|+-+|.+++......+.+..+|...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35677899988899999999999999999999999999999999999999999999999998887788889998888765


Q ss_pred             H
Q 029105          172 V  172 (199)
Q Consensus       172 ~  172 (199)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00074  Score=54.48  Aligned_cols=112  Identities=8%  Similarity=0.011  Sum_probs=76.4

Q ss_pred             ccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHH--H-cCCHHHHHHHHHHHhhc--------c----------cccHHH
Q 029105           70 DGK-FREALGKWEAALNLRPENAVLHEQKAQVLL--E-LGDAWNALKAATRATEL--------E----------QSWAEA  127 (199)
Q Consensus        70 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~----------p~~~~~  127 (199)
                      .++ ++.|+..+++....+|.....+ ..+.+..  . ..+=-+|++.+.+++..        .          |.....
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 5778999999888888764432 2222221  1 12334566666666531        1          112234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                      +..-+..+...|+++-|+.+-++++...|.....|..|+.||..+|+++.|.-..
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            4555666778899999999999999999999999999999999999999887533

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.52  E-value=0.0044  Score=46.33  Aligned_cols=94  Identities=20%  Similarity=0.197  Sum_probs=76.1

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----------------------AVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      +...|......|+.+.|...+.+++.+....                      ..+...++..+...|++.+++..+..+
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3344444556789999999999998874221                      023445677788999999999999999


Q ss_pred             hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      +..+|-+-.++..+-.++...|+..+|+..|+++.+
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00073  Score=54.50  Aligned_cols=81  Identities=25%  Similarity=0.300  Sum_probs=64.9

Q ss_pred             ccHHHHHHHHHHHHcc--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           71 GKFREALGKWEAALNL--------RPEN----------AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      .+--+|+....+.++.        .+.+          ...+...+..+...|+|+-|+.+.++++...|.....|+.|+
T Consensus       299 ~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La  378 (754)
T 4gns_B          299 TKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLA  378 (754)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            3455677777776632        2222          235566688888899999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHH
Q 029105          133 RAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       133 ~~~~~~~~~~~A~~~~~~a  151 (199)
                      .||..+|+++.|+-.+.-+
T Consensus       379 ~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          379 RCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHhccHHHHHHHHhcC
Confidence            9999999999999776655

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.44  E-value=0.0015  Score=50.26  Aligned_cols=79  Identities=18%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      ..+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+.+|.+++......+.+..++...+.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999999999999999999999998876556666666666554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.29  E-value=0.013  Score=38.27  Aligned_cols=105  Identities=13%  Similarity=-0.028  Sum_probs=76.3

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--c---------
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE--L---------  120 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~---------  120 (199)
                      ..|..++.-..++..++-.|.+..++-.+..     -+.....+.-+.|+.+.++|..|+.+++..++  .         
T Consensus        28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~  102 (242)
T 3kae_A           28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR  102 (242)
T ss_dssp             HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred             HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence            3444556666778888889999888765532     24466777888899999999999999999883  2         


Q ss_pred             ------ccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          121 ------EQSWAE-AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       121 ------~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                            +|.+-+ .+..+|.++...|+.++|+.+|.......|-.+.+
T Consensus       103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence                  233333 35567889999999999999999888887765543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.27  E-value=0.009  Score=41.92  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE  126 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  126 (199)
                      .+++.|+.++|+......++.+|.+......+-..++-.|+|+.|..-++.+.+++|....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4567888999999999999999999998888899999999999999999999999887654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.18  E-value=0.0064  Score=45.40  Aligned_cols=91  Identities=14%  Similarity=0.026  Sum_probs=41.0

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---c----cHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPE--N----AVLHEQKAQVLLELGDAWNALKAATRATELEQ---S----WAEAW  128 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~  128 (199)
                      .+|..|+..|+|.+|.+.+.+.......  +    ..++.....++...+++.++...+.++.....   .    .+...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            3455555555555555555544432111  0    23344444455555555555555555443310   1    11223


Q ss_pred             HHHHHHHH-hcCChHHHHHHHHHHH
Q 029105          129 ITLGRAQL-NFGEPDKAIESFERAL  152 (199)
Q Consensus       129 ~~lg~~~~-~~~~~~~A~~~~~~al  152 (199)
                      ..-|..++ ..++|..|...|-+++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHH
Confidence            33444555 4555555555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.72  E-value=0.05  Score=44.20  Aligned_cols=46  Identities=15%  Similarity=-0.004  Sum_probs=32.2

Q ss_pred             HHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        67 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ....|++++|.+..+.     .++...|..+|..+.+.++++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4566777777765432     245677778888888888888888777765

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0059  Score=46.97  Aligned_cols=142  Identities=12%  Similarity=-0.044  Sum_probs=69.9

Q ss_pred             hhccchhhhhhccccc-------------chhhHHHHHHHHhhHHHhcccHHHHH----------HHHHHHHc-----cC
Q 029105           36 AELEKNDDNNEHQEPF-------------DAKQLALSFEAQGNNLAEDGKFREAL----------GKWEAALN-----LR   87 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~A~----------~~~~~~l~-----~~   87 (199)
                      +..+++++|.......             .++-.+.+|+.++.++...|+.....          ..+-.+++     .+
T Consensus       147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D  226 (523)
T 4b4t_S          147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD  226 (523)
T ss_dssp             --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence            3456666666543322             34445667777777777777665432          12222222     12


Q ss_pred             CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH--
Q 029105           88 PE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQ-----SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE--  159 (199)
Q Consensus        88 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--  159 (199)
                      +. ...++..+-..|...+.|++|.....++.-...     .....++.+|.++..+++|.+|..++..|++..|.+.  
T Consensus       227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a  306 (523)
T 4b4t_S          227 NETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS  306 (523)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred             cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence            22 257788899999999999999999999853211     1245678899999999999999999999999887542  


Q ss_pred             -----HHHHHHHHHHHHHhhhhh
Q 029105          160 -----EARDDRQTALHLVKRRKH  177 (199)
Q Consensus       160 -----~~~~~l~~~~~~~~~~~~  177 (199)
                           .++..+..+-..+|+..+
T Consensus       307 ~gfr~~a~K~lI~V~LLlG~iP~  329 (523)
T 4b4t_S          307 LGFLQQSNKLHCCIQLLMGDIPE  329 (523)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             hhHHHHHHHHHHhHHhhcCCCCC
Confidence                 234445555556777554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.58  E-value=0.068  Score=44.82  Aligned_cols=100  Identities=4%  Similarity=-0.186  Sum_probs=80.7

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHHHH
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL----RPENAVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAEAW  128 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~  128 (199)
                      .....+..+-..+.+.|+.++|...|...-+.    ...+...|..+-..+.+.|++++|.+.|++....  .|+ ...|
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTY  203 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHH
Confidence            34456888999999999999999999765432    2335788899999999999999999999998765  454 6677


Q ss_pred             HHHHHHHHhcCCh-HHHHHHHHHHHhcC
Q 029105          129 ITLGRAQLNFGEP-DKAIESFERALAIK  155 (199)
Q Consensus       129 ~~lg~~~~~~~~~-~~A~~~~~~al~~~  155 (199)
                      ..+-.++.+.|+. ++|...|++.....
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            7777788888985 78899999988764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.53  E-value=0.08  Score=34.59  Aligned_cols=92  Identities=9%  Similarity=-0.018  Sum_probs=72.8

Q ss_pred             hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--cc---------------CCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NL---------------RPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~---------------~~~~~   91 (199)
                      +-++.+++-.|+|..++..+...   +...+.+..+.|+....++..|+.+++..+  ..               +|.+.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            34577888889999988877654   235677888999999999999999999998  22               23343


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           92 -VLHEQKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        92 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                       ..+..+|.++.+.|+.++|+.++......+|-
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence             45677899999999999999999887776553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.46  E-value=0.039  Score=47.06  Aligned_cols=114  Identities=12%  Similarity=0.060  Sum_probs=71.9

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----------------------c
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-----------------------Q  122 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------p  122 (199)
                      .+...+.++-+.+    .+...|.++...+.+|.++...|++++|..+|+++...-                       .
T Consensus       821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~  896 (1139)
T 4fhn_B          821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN  896 (1139)
T ss_dssp             HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred             HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence            3444555544433    334456666666778888888888888888887763210                       0


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cH----HHHHHHHHHHHHHhhhhhhhhhcc
Q 029105          123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-SE----EARDDRQTALHLVKRRKHLHLSGL  183 (199)
Q Consensus       123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~l~~~~~~~~~~~~a~~~~~  183 (199)
                      ..+..++.+..++...|.++.+++..+.|+...+. +.    ..|.++-..+..+|+|++|..+..
T Consensus       897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            11234556666777778888888888877766543 22    256666777777888888765443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.41  E-value=0.037  Score=38.88  Aligned_cols=62  Identities=16%  Similarity=0.073  Sum_probs=57.4

Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      .+++.|+.++|++.....++.+|.+......+...+.-.|+++.|...++.+.+++|.....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            35678999999999999999999999999999999999999999999999999999987543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.41  E-value=0.034  Score=45.17  Aligned_cols=43  Identities=30%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER  150 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  150 (199)
                      ..|++++|.+..+.     .+++..|..+|..+...|+++.|+.+|.+
T Consensus       664 ~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          664 KVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34555555444321     12334455555555555555555555544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.051  Score=41.16  Aligned_cols=99  Identities=12%  Similarity=-0.013  Sum_probs=78.2

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--cc----HHHH
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPE---NAVLHEQKAQVLLELGDAWNALKAATRATELEQ--SW----AEAW  128 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~  128 (199)
                      .++..+|..++..|+++.|.+.|.++......   -...+.....++...+++..+...+.++.....  .+    ....
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            45678999999999999999999998765332   357788888889999999999999999876521  12    2345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKP  156 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p  156 (199)
                      ...|.++...++|.+|-..|..++....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            5667888899999999999988876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.38  E-value=0.11  Score=38.82  Aligned_cols=113  Identities=11%  Similarity=-0.082  Sum_probs=70.9

Q ss_pred             hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC---CCc----HHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR---PEN----AVLH   94 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~----~~~~   94 (199)
                      .+|..++..|+|.+|...+.+.        ......+++.....++...+++.++...+.++....   +.+    +.+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5577777888888887766555        123445667777777788888888887777765432   122    2445


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChH
Q 029105           95 EQKAQVLL-ELGDAWNALKAATRATELE-----QSWAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        95 ~~la~~~~-~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~  142 (199)
                      ..-|..+. ..++|..|...|-+++.-.     |....+...++.|-.-.++..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~  237 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSD  237 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHH
Confidence            55677777 7888888888777776432     222234445555666655543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.35  E-value=0.021  Score=42.68  Aligned_cols=63  Identities=19%  Similarity=0.112  Sum_probs=56.5

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .+...++..+...|++.+|+..+.+++..+|.+..++..+..++...|+..+|+..|+++-+.
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345567788889999999999999999999999999999999999999999999999887653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.23  Score=37.80  Aligned_cols=100  Identities=13%  Similarity=0.015  Sum_probs=75.1

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-C-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---cccc-
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL-R-PEN----AVLHEQKAQVLLELGDAWNALKAATRATEL---EQSW-  124 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~-  124 (199)
                      ..+.....++.++...|++.+|...+.....- . ..+    ..++.....++...+++.+|...+.++...   .+.+ 
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            35666778899999999999999998886532 1 111    467778888899999999999988886431   2222 


Q ss_pred             ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105          125 ---AEAWITLGRAQLNFGEPDKAIESFERALAI  154 (199)
Q Consensus       125 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  154 (199)
                         ...+...|..+...++|.+|-.+|.+++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               235567788889999999999999888764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.084  Score=40.20  Aligned_cols=92  Identities=10%  Similarity=-0.028  Sum_probs=74.4

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc---cCCCc----HHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN---LRPEN----AVL   93 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~----~~~   93 (199)
                      ..++.++...|++.+|.......        ....-.+.+.....++...+++..|...++++..   ..+.+    ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            45688999999999999877665        4445678888999999999999999999988632   22333    356


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           94 HEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        94 ~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      +...|..+...++|.+|-.+|..++..
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            788899999999999999999998864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.94  E-value=0.11  Score=44.39  Aligned_cols=123  Identities=11%  Similarity=-0.054  Sum_probs=88.1

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-----------------------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLR-----------------------PENAVLHEQKAQVLLELGDAWNALK  112 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A~~  112 (199)
                      ++...+.+|.++...|++++|..+|+++..--                       ...+..|.....++.+.+.++.+++
T Consensus       841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456889999999999999999999873211                       1113566777888889999999999


Q ss_pred             HHHHHhhccc-ccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105          113 AATRATELEQ-SWA----EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH  179 (199)
Q Consensus       113 ~~~~al~~~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~  179 (199)
                      ..+.|++..+ ++.    ..|.++=..+...|+|++|...+...-.. .....++..|....+..|+.++..
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCChhhhh
Confidence            9999997643 222    25777778889999999998777544222 223556666666666666655543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.23  Score=32.60  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=51.9

Q ss_pred             hhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 029105           35 GAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA  114 (199)
Q Consensus        35 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  114 (199)
                      ..+.|+++.|.+.....   ++...|..+|......|+++-|..+|.++-.        +..+..+|.-.|+.+.-....
T Consensus        15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence            34455666665554332   2344566666666666666666666665421        122233333445544433333


Q ss_pred             HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105          115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA  151 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  151 (199)
                      +.+.....     +.....+++.+|+++++++.|.+.
T Consensus        84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            33322211     122345567788888888887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.54  E-value=0.2  Score=42.10  Aligned_cols=87  Identities=3%  Similarity=-0.214  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATEL-----EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDR  165 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  165 (199)
                      ..+..+-..+.+.|+.++|...+......     .| +...|..+-..|.+.|+.++|.+.|++..... .-+...+..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            56788889999999999999999775433     34 56789999999999999999999999998764 2347778888


Q ss_pred             HHHHHHHhhh-hhhh
Q 029105          166 QTALHLVKRR-KHLH  179 (199)
Q Consensus       166 ~~~~~~~~~~-~~a~  179 (199)
                      ..++.+.|+. ++|.
T Consensus       207 I~glcK~G~~~e~A~  221 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIE  221 (1134)
T ss_dssp             HHHHHHHTCCHHHHH
T ss_pred             HHHHHhCCCcHHHHH
Confidence            8888888875 4443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.13  Score=33.77  Aligned_cols=49  Identities=20%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      .....|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-.
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            345789999999887765     5688899999999999999999999988743

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.067  Score=40.52  Aligned_cols=92  Identities=10%  Similarity=-0.109  Sum_probs=73.9

Q ss_pred             hhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--Cc----HHHHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--EN----AVLHEQK   97 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~l   97 (199)
                      ..+|..++..|++++|.+.|.+.     ........+..+..++...++|..+...+.++-....  .+    ..+....
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~  214 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY  214 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence            56789999999999999999887     3345678889999999999999999999999865421  22    2455667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhc
Q 029105           98 AQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        98 a~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      |..+...++|..|...|-.++..
T Consensus       215 gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          215 GIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHhcc
Confidence            88888899999999999887754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.24  E-value=0.21  Score=39.73  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=77.3

Q ss_pred             chhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           32 GLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        32 g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      +.......+.+.|...+...      ...........++......+...++...+.+.....+++.. ...++......|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCC
Confidence            44444445566666665443      22222333444554555555455666777776554443333 334444455679


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      ++..|...+.+.-...+..+...|-+|.++..+|+.++|...|+++..
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999999877665556677888899999999999999999988875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.19  E-value=2.1  Score=36.01  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=69.9

Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------------------c--
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE------------------Q--  122 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------p--  122 (199)
                      +...+...|.++-|    ...+...|.++..-+.+|.++...|++++|..+|++|-.--                  |  
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            44555666776654    34667788888888999999999999999999998876310                  0  


Q ss_pred             ---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHH
Q 029105          123 ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEE  160 (199)
Q Consensus       123 ---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~  160 (199)
                         .....|.....++...+.++-++...+.|+..- ++++.
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence               012356778888889999999999999999654 45544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.56  E-value=1.5  Score=31.70  Aligned_cols=114  Identities=9%  Similarity=-0.052  Sum_probs=65.4

Q ss_pred             hhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHH
Q 029105           36 AELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLL  102 (199)
Q Consensus        36 ~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~  102 (199)
                      ...|+|=+|...++..        ...+-.+.++.-+..+...|++..|.+...-.++.     .|-+......+..++.
T Consensus        24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3445665665555444        23344556666777777777777766654333322     2223444455555554


Q ss_pred             HcCCHH-HHHHHHHHHhhc-------ccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105          103 ELGDAW-NALKAATRATEL-------EQSWAEAWITLGRAQLNFGEPDKAIESFE  149 (199)
Q Consensus       103 ~~~~~~-~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  149 (199)
                      ....-+ .=....++++.-       .-.++..|..+|..+...|++.+|..+|-
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            432211 112333444432       22578899999999999999999988774

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.48  E-value=0.2  Score=38.78  Aligned_cols=71  Identities=13%  Similarity=-0.041  Sum_probs=58.9

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW  124 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  124 (199)
                      +....+..+..+-+.|...+.+++|.....++.  .|..       ...++.+|.++.-+++|.+|.+++..|++..|.+
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            344567788889999999999999999999985  3422       4667889999999999999999999999987743

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.09  E-value=0.82  Score=36.39  Aligned_cols=122  Identities=13%  Similarity=-0.116  Sum_probs=77.0

Q ss_pred             HhhHHHhcccHHHHHHHHHHHHccCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           63 QGNNLAEDGKFREALGKWEAALNLRPENA----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      .+...+...+.+.|...+.......+-+.    ..+..++.-+...+...++...+.+.....+++.......+. ....
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHC
Confidence            34444555678888888877654332222    222333333334453557777777766554443333333343 4567


Q ss_pred             CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          139 GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       139 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      |+++.|..+|..+-......+...+.+|.++...|+.++|...+...
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~  345 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL  345 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999998765544456778899999999999999887755433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.86  E-value=3.6  Score=30.02  Aligned_cols=94  Identities=9%  Similarity=-0.012  Sum_probs=50.4

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhhcc
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELGD--------AWNALKAATRATELE  121 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~  121 (199)
                      +-.+.++.-+..+.+.|+...|.+...-.++.     -|-+......+..++.....        .++|+.+-.+.=...
T Consensus        53 eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~  132 (336)
T 3lpz_A           53 AAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYP  132 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCC
Confidence            34455556666666666666655544322221     11223344445555444333        122333332211112


Q ss_pred             cccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105          122 QSWAEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus       122 p~~~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      -.++..+..+|..|.+.+++.+|...|
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            257888889999999888888887776

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.92  E-value=2.5  Score=26.68  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=53.0

Q ss_pred             cccHHHHHHHHHHHHccCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105           70 DGKFREALGKWEAALNLRPENAVLHEQKA-QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus        70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      .|+...-+.+|-+.   +.. .. +..+| ..+..+|+-++-.+.+...+...+-+|+.++.+|.+|.+.|+..+|.+.+
T Consensus        74 C~NlKrVi~C~~~~---n~~-se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           74 CQNLKSVVECGVIN---NTL-NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             CSCTHHHHHHHHHT---TCC-CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcHHHHHHHHHHh---cch-HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            35555555555442   111 12 22333 34556788787777777766666667888999999999999999999888


Q ss_pred             HHHHhcC
Q 029105          149 ERALAIK  155 (199)
Q Consensus       149 ~~al~~~  155 (199)
                      .+|.+..
T Consensus       149 ~~AC~kG  155 (172)
T 1wy6_A          149 IEACKKG  155 (172)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            8887654

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=88.78  E-value=3.9  Score=27.41  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=34.8

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE  121 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  121 (199)
                      .+|....+|...+... ..+...++...|.-+.  .+.-..+..|...|..+...|++.+|..+|+.+++..
T Consensus        75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~  145 (202)
T 3esl_A           75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN  145 (202)
T ss_dssp             TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4444455555555443 1222334444444433  2334445555556666666666666666666666543

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=88.54  E-value=1.9  Score=32.87  Aligned_cols=88  Identities=13%  Similarity=0.002  Sum_probs=60.8

Q ss_pred             ccHHHHHHHHHHHHccCCCc------------H----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------c--cc
Q 029105           71 GKFREALGKWEAALNLRPEN------------A----VLHEQKAQVLLELGDAWNALKAATRATELE--------Q--SW  124 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~~~~~------------~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p--~~  124 (199)
                      ...+++...+.++....-++            -    .....+-.+|++.++..-+...++..-...        |  .-
T Consensus       140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~  219 (455)
T 3t5v_B          140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ  219 (455)
T ss_dssp             HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence            34567777777776552111            1    233455688899999988887775432221        2  23


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCc
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAI-KPDS  158 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~  158 (199)
                      ...+|.+|..++..++|.+|...+..|++. .|..
T Consensus       220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            456788999999999999999999999998 6654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.40  E-value=2.5  Score=35.59  Aligned_cols=91  Identities=8%  Similarity=-0.063  Sum_probs=61.0

Q ss_pred             hhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CCC----------------------c
Q 029105           34 SGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RPE----------------------N   90 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~----------------------~   90 (199)
                      .+...|.++-+.+...-.  |.++..-+.+|.++...|++++|..+|+++-.- ...                      .
T Consensus       819 ~L~~~~~~~~a~eL~~~~--~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~  896 (950)
T 4gq2_M          819 KLFLFKQYNACMQLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL  896 (950)
T ss_dssp             HHHHTTCHHHHHHHGGGC--CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHH
T ss_pred             HHHHhcHHHHHHHHHhhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchh
Confidence            334445554443322222  223445689999999999999999999986421 110                      1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAE  126 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~  126 (199)
                      ...|.....++...+-++.+++..+.||.. .++++.
T Consensus       897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence            246777888888999999999999999965 344443

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.98  E-value=2.1  Score=23.49  Aligned_cols=25  Identities=16%  Similarity=0.411  Sum_probs=9.7

Q ss_pred             hhHHHhcccHHHHHHHHHHHHccCC
Q 029105           64 GNNLAEDGKFREALGKWEAALNLRP   88 (199)
Q Consensus        64 ~~~~~~~~~~~~A~~~~~~~l~~~~   88 (199)
                      |..+...|++++|+.+|-+|+...|
T Consensus        24 GE~L~~~g~~~~~~~hf~nAl~Vc~   48 (73)
T 3ax2_A           24 GEELLAQGDYEKGVDHLTNAIAVCG   48 (73)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHcC
Confidence            3333333333333333333333333

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=87.29  E-value=2.4  Score=32.34  Aligned_cols=64  Identities=8%  Similarity=-0.167  Sum_probs=49.5

Q ss_pred             HHHhhHHHhcccHHHHHHHHHHHHccC--------CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cccc
Q 029105           61 EAQGNNLAEDGKFREALGKWEAALNLR--------PE--NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSW  124 (199)
Q Consensus        61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~  124 (199)
                      ..+-.+|++.++...+...++..-...        |.  -....+.+|..+...++|.+|.+.+..|++. .|..
T Consensus       180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            345578899999998888886543322        11  1467889999999999999999999999998 7754

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=86.76  E-value=2.3  Score=28.51  Aligned_cols=79  Identities=11%  Similarity=-0.073  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH-----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA-----WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR  165 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  165 (199)
                      ....+.+|.+++..++|.+|.+.+..|+...|.....     +..+-.+-+-+|++.. ...+++    .+.  ..+..+
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L   86 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV   86 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence            4678889999999999999999999999987764332     3334444566788764 333432    111  135566


Q ss_pred             HHHHHHHhhhhh
Q 029105          166 QTALHLVKRRKH  177 (199)
Q Consensus       166 ~~~~~~~~~~~~  177 (199)
                      ..+. +.|+...
T Consensus        87 ~~Av-r~Gdl~~   97 (203)
T 3t5x_A           87 TRAV-SEGNLLL   97 (203)
T ss_dssp             HHHH-HHTCHHH
T ss_pred             HHHH-HhCCHHH
Confidence            5544 4555444

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=85.42  E-value=3.1  Score=27.90  Aligned_cols=56  Identities=16%  Similarity=0.029  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHH
Q 029105           53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAW  108 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~  108 (199)
                      ..+.....+.+|.+++..++|.+|.+.+..|+...|...     .++..+--+-.-+|++.
T Consensus        10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP   70 (203)
T 3t5x_A           10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP   70 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            345677888999999999999999999999999887653     22333333344566643

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=84.68  E-value=3.3  Score=33.29  Aligned_cols=52  Identities=23%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105          127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      .....|...+..|+|..|.+....++..+|++.++...++.++.++|...+.
T Consensus       451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~  502 (658)
T 2cfu_A          451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN  502 (658)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            4556777888999999999999999999999999999999999999976653

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=83.14  E-value=7.1  Score=25.11  Aligned_cols=62  Identities=13%  Similarity=0.077  Sum_probs=40.6

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHH---HH---HHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVL---HE---QKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~---~~---~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .-+..+..++..|+|=+|-+.++.+....+..   ..+   +.   .-|..+.+.|+...|...+.+++..
T Consensus        34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34556777788888888888888888765543   112   22   2233445678888888877777653

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=83.05  E-value=6.5  Score=26.79  Aligned_cols=50  Identities=12%  Similarity=0.020  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105          108 WNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       108 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      +.+..+|.-+..  +....+..|...|..+...|++.+|...|+..++..-.
T Consensus       131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~  182 (223)
T 4aez_C          131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK  182 (223)
T ss_dssp             SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred             CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence            344455555443  34456677777788888888888888888888876543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.84  E-value=4.2  Score=22.27  Aligned_cols=31  Identities=23%  Similarity=0.452  Sum_probs=17.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105          130 TLGRAQLNFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      .+|..+...|++++|..+|-+|+...|.-.+
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            4555555555555555555555555555433

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=82.74  E-value=12  Score=27.63  Aligned_cols=27  Identities=7%  Similarity=-0.084  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRA  117 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~a  117 (199)
                      ...+..+|-++++.+++.+|+..+..+
T Consensus       296 vYPYtylgGy~yR~~~~reAl~~WA~A  322 (472)
T 3re2_A          296 IYPYTYLGGYYYRKKKYYEAIASWVDA  322 (472)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence            344445555555555555555555444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.21  E-value=7.3  Score=24.60  Aligned_cols=55  Identities=20%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .+..+|+-++-.+.+...+.-.+-++.++.-+|.+|.+.|+..+|-+.+.+|.+.
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3456777777777777766767777999999999999999999999999988765

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.18  E-value=3.5  Score=23.67  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRAT  118 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al  118 (199)
                      +..+...+..+...|+|++||++.+++.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            3455566777777788888877766654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.11  E-value=2.9  Score=23.99  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALN   85 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   85 (199)
                      .+..+-..+..+...|+|++|+++.+++..
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            466677889999999999999988877653

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=81.99  E-value=3.4  Score=23.97  Aligned_cols=28  Identities=25%  Similarity=0.196  Sum_probs=13.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           96 QKAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        96 ~la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      .+|..+...|+++.|+.+|-+|+...|.
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            3444444555555555555555554443

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=81.25  E-value=3.9  Score=29.58  Aligned_cols=103  Identities=12%  Similarity=0.002  Sum_probs=56.0

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCC----Cc----HHH--------HHHHHHHHH---Hc---CCHHHHHH--HH
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRP----EN----AVL--------HEQKAQVLL---EL---GDAWNALK--AA  114 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----~~----~~~--------~~~la~~~~---~~---~~~~~A~~--~~  114 (199)
                      .....|.-++..|+|++|+..|+.++..-|    ++    ..+        .+.+|...-   +.   .+....++  .|
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            345667777888888888888887765422    11    111        122222211   10   11122221  12


Q ss_pred             HHHhhcccccHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105          115 TRATELEQSWAEAWITLG-RAQLNFGEPDKAIESFERALAIKPDSEEA  161 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~~~  161 (199)
                      -.-..+.|.+...-...| ...++.++|..|....++.+++.|....+
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a  243 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA  243 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence            222234554443333333 35678899999999999999999875544

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=80.50  E-value=8.8  Score=24.42  Aligned_cols=47  Identities=11%  Similarity=-0.008  Sum_probs=27.0

Q ss_pred             HHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105          110 ALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP  156 (199)
Q Consensus       110 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  156 (199)
                      +..+|.-+...  -...+..|...|..+...|++.+|...|+..++...
T Consensus        84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A  132 (152)
T 4a1g_A           84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA  132 (152)
T ss_dssp             HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            44455444432  334555666666666666666666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.004
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.001
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.002
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.002
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 8e-13
 Identities = 27/107 (25%), Positives = 44/107 (41%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N L E G   EA   +  AL L P +A      A +  E G+   A++   +A E+   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170
           +A A   L       G+  +A+  ++ A+ I P   +A  +    L 
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 7e-12
 Identities = 28/124 (22%), Positives = 47/124 (37%)

Query: 47  HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
            +        A+++   G      G+   A+  +E A+ L P     +     VL E   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
              A+ A  RA  L  + A     L       G  D AI+++ RA+ ++P   +A  +  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 167 TALH 170
            AL 
Sbjct: 279 NALK 282

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 1e-11
 Identities = 22/113 (19%), Positives = 42/113 (37%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
                E G    A+  +  A+ L+P     +   A  L E G    A      A  L  +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176
            A++   L   +   G  ++A+  + +AL + P+   A  +  + L    + +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 30/120 (25%), Positives = 50/120 (41%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
               ++   GN L E   F  A+  +  AL+L P +AV+H   A V  E G    A+   
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
            RA EL+  + +A+  L  A    G   +A + +  AL + P   ++ ++          
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 11/84 (13%), Positives = 22/84 (26%)

Query: 96  QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
           + A    + GD   A +   +    E       + L          D++      A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 156 PDSEEARDDRQTALHLVKRRKHLH 179
           P   EA  +         + +   
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAI 87

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 12/76 (15%), Positives = 23/76 (30%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
             +   + G F  A           P+N  +    + +  +      +   +T A +   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 123 SWAEAWITLGRAQLNF 138
             AEA+  LG      
Sbjct: 65  LLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 21/76 (27%), Positives = 31/76 (40%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
            N   E G   EA+  +  AL + PE A  H   A VL + G    AL     A  +  +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 124 WAEAWITLGRAQLNFG 139
           +A+A+  +G       
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 20/95 (21%), Positives = 40/95 (42%)

Query: 80  WEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139
           +  A+  +P  AV       V    G+ W A+    +A  L+ ++ +A+I LG       
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
             D+A+ ++ RAL++ P+      +     +    
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106
            + L + GK +EAL  ++ A+ + P  A  +      L E+ D
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 18/109 (16%), Positives = 37/109 (33%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           Q  N   +G+ ++AL     A+   P++A L     ++L   GD   A +   ++ +L  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
            +      L              +    A  +  + E  +      L +
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSM 110

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 1/103 (0%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
              L  DG F  A  +   ++ L PE      Q   ++       +  + A  A  L ++
Sbjct: 37  IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGEN 96

Query: 124 WA-EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
                 +      +   + ++  E   +   ++ +     +D 
Sbjct: 97  EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 11/78 (14%), Positives = 26/78 (33%)

Query: 98  AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
            +  L  G    AL+    A +     A    +        G+ ++A E   +++ + P+
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 158 SEEARDDRQTALHLVKRR 175
                   +  +   + R
Sbjct: 63  YLPGASQLRHLVKAAQAR 80

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 7e-10
 Identities = 31/108 (28%), Positives = 48/108 (44%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           A   + QGN L    K+ EA   +  A+   P  AV +  +A   L++     AL    R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164
           A EL+    +A   LG+ QL     D+AI + +RA ++  +      D
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 5/154 (3%)

Query: 13  KRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGK 72
            R++ + P +     ++       +  +    +  +      Q   +    G    E   
Sbjct: 28  GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87

Query: 73  FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132
           + EA+   + A +L  E  +         L +              E  +   E+ +   
Sbjct: 88  YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI-----EERRIHQESELHSY 142

Query: 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
             +L   E ++ +E  +R      D    R  + 
Sbjct: 143 LTRLIAAERERELEECQRNHEGHEDDGHIRAQQA 176

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 16/132 (12%), Positives = 39/132 (29%), Gaps = 2/132 (1%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
              +     G    +       +    ++ +   ++ ++H     +         A    
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL--GDIARYRNQTSQAESYY 175

Query: 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
             A +L  S  + +  L     + G+    I  + R++A+K     A  + Q AL     
Sbjct: 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235

Query: 175 RKHLHLSGLSND 186
            +    +     
Sbjct: 236 SRDEVKTKWGVS 247

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 28/125 (22%), Positives = 58/125 (46%)

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111
            A + A   + Q N+  +   +  A+  +  A+ L P NA+ +  ++   L       AL
Sbjct: 5   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 64

Query: 112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
             ATRA EL++ + + +     + +  G+   A+  +E  + +KP  ++A+   Q    +
Sbjct: 65  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124

Query: 172 VKRRK 176
           VK++ 
Sbjct: 125 VKQKA 129

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 5e-07
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-------DAWN 109
           AL  +  GN+  +   F  AL  ++ A  L P N      +A V  E G           
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
           A++      E  +  A+A+  +G +     +   AI  + ++LA     +  +  +Q
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 8e-07
 Identities = 22/128 (17%), Positives = 39/128 (30%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +G    ++G    A+  +EAA+   P++    +       E      A+ A  R  EL+ 
Sbjct: 25  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182
               A + L  +  N     +A E     L   P         +             + G
Sbjct: 85  DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144

Query: 183 LSNDANRF 190
                + F
Sbjct: 145 SLLSDSLF 152

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 9e-05
 Identities = 27/102 (26%), Positives = 49/102 (48%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G      G++ +A+  + AAL++RP + +L  +    L     +  A+ A  RA EL+  
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165
           +  +   LG + +N G   +A+E F  AL ++  S   R + 
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 16/152 (10%)

Query: 41  NDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA----------------L 84
            D + + ++      ++   +  GN   +   +  A+ K+                    
Sbjct: 11  EDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA 70

Query: 85  NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA 144
            L+P             L++ D   A+ +   A E++ S  +A     +      E D+A
Sbjct: 71  KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 130

Query: 145 IESFERALAIKPDSEEARDDRQTALHLVKRRK 176
           +   ++A  I P+ +  + +       +K +K
Sbjct: 131 LADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-06
 Identities = 20/101 (19%), Positives = 44/101 (43%)

Query: 63  QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
           +GN     G   +AL  +  A+ L P N VL+  ++    + GD   A +   +  +L+ 
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163
            W + +     A       ++A  ++E  L  + ++ + ++
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 109

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 65  NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ-- 122
           N L       +   K+++       +     + A  L+      +  K      EL    
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 123 ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
                 +    L        E +KA++     L  +P + +A++  +     +K+
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 17/107 (15%), Positives = 29/107 (27%)

Query: 65  NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW 124
            N        ++   +   L  R E     E   +    L     + K         +  
Sbjct: 216 QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC 275

Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171
               I L RA        + ++ F    A+ P      DD ++   L
Sbjct: 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 42.2 bits (98), Expect = 7e-06
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 55  QLALSFEAQGNNLAEDGKFREALGKWEAALNL---------------RPENAVLHEQKAQ 99
           + A   + +G    + GK+ +A+ ++   ++                           A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
             L+L +   A++   +A  L+ +  +     G AQL   E + A   FE+ L + P ++
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 160 EARDDRQTALHLVKRRK 176
            AR          K   
Sbjct: 133 AARLQIFMCQKKAKEHN 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 23/141 (16%), Positives = 59/141 (41%), Gaps = 16/141 (11%)

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKWE----------------AALNLRPENAVLHE 95
           +  Q A   + +GN   +  +  EA+ K++                     +      + 
Sbjct: 12  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 71

Query: 96  QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155
             A    +  D   A+  A++  +++++  +A   LG A + FG  ++A E+  +A ++ 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 156 PDSEEARDDRQTALHLVKRRK 176
           P++ + R+  +  ++ +K  +
Sbjct: 132 PNNLDIRNSYELCVNKLKEAR 152

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 8e-05
 Identities = 20/115 (17%), Positives = 39/115 (33%)

Query: 60  FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
           +        ++ + +E L +     +       + E     + E          AT  T 
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203

Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           L +  +E    LG+  L+ G+ D A   F+ A+A    +          L L+ +
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 57  ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
           A+S   +G   A+   ++ AL   +A   ++  ++ +      +   L +   A KA TR
Sbjct: 5   AISLWNEGVLAADKKDWKGAL---DAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61

Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
           +   ++  A A+   G       + D AI+  + AL     
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 18/131 (13%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
           G          EA   +  ++N     AV + Q+  +  +      A+K    A    + 
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 124 WA----------------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167
                             E    +        E  KA E    A ++K +   ++ D+  
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK-- 160

Query: 168 ALHLVKRRKHL 178
           A+  V ++K  
Sbjct: 161 AMECVWKQKLY 171

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 24/140 (17%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 52  DAKQLALSFEAQGNNLAEDGKFREALGKW---------------EAALNLRPENAVLHEQ 96
           +  + +   + +G    ++GK+++AL ++               E A   +      H  
Sbjct: 8   EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 67

Query: 97  KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
            A   L+L     A+++  +A EL+ +  +     G A L   + + A   F++ L + P
Sbjct: 68  LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127

Query: 157 DSEEARDDRQTALHLVKRRK 176
           +++ A+         ++R+ 
Sbjct: 128 NNKAAKTQLAVCQQRIRRQL 147

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 23/149 (15%)

Query: 50  PFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------------NAVLHEQK 97
           P      A    +        G++ EA      A+ +               +A  H   
Sbjct: 2   PLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGL 61

Query: 98  AQVLLELGDAWNALKAATRATELEQSWAEAWIT-----------LGRAQLNFGEPDKAIE 146
           A+ L  L     AL +A +A        E                  A    G   +A+ 
Sbjct: 62  AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 121

Query: 147 SFERALAIKPDSEEARDDRQTALHLVKRR 175
            F++ + +  + +     ++  + +   R
Sbjct: 122 EFKKVVEMIEERKGETPGKERMMEVAIDR 150

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 23/113 (20%), Positives = 32/113 (28%), Gaps = 12/113 (10%)

Query: 62  AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
             G + A  G+F +A     AAL       +   +  Q                 AT L 
Sbjct: 16  TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQF------------VEPFATALV 63

Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174
           +    A      A++  G     I   E      P  E       TA +L  R
Sbjct: 64  EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR 116

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 1/115 (0%)

Query: 64  GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN-ALKAATRATELEQ 122
              L  D +   A      A+ L   N  +   +  +L  L    +  +   T   E + 
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177
              + W           +P + +E     L     +  A   RQ  +   K   +
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.91
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.85
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.69
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.5
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.43
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.41
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.15
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.78
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.58
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	89.38
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.7
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.45
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	88.27
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	81.6
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.18
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	80.47

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=151.57  Aligned_cols=160  Identities=17%  Similarity=0.132  Sum_probs=115.6

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHH---------
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK---------   97 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l---------   97 (199)
                      ++.|..++..|++++|+..|.++  .+|.++.++..+|.++...|++++|+..|.++++++|+++..+..+         
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            45677777777777777777776  6666777777777777777777777777777776666655544444         


Q ss_pred             ----------------------------------------------------------------------------HHHH
Q 029105           98 ----------------------------------------------------------------------------AQVL  101 (199)
Q Consensus        98 ----------------------------------------------------------------------------a~~~  101 (199)
                                                                                                  |.++
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence                                                                                        4455


Q ss_pred             HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       102 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      ...|++++|+..+++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|...
T Consensus       183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            55555666666667777777777777888888888888888888888888888888888888888888888888887776


Q ss_pred             cccccch
Q 029105          182 GLSNDAN  188 (199)
Q Consensus       182 ~~~~~~~  188 (199)
                      +..+.+.
T Consensus       263 ~~~al~l  269 (323)
T d1fcha_         263 FLEALNM  269 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6655543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-23  Score=127.83  Aligned_cols=114  Identities=18%  Similarity=0.324  Sum_probs=109.1

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      +.-+...|..++..|++++|+..|.+++..+|+++.+|.++|.++..+|++++|+..+.+++.++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      .+|++++|+..|+++++++|+++.++..++.+..
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999887753

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=152.46  Aligned_cols=171  Identities=16%  Similarity=0.106  Sum_probs=142.0

Q ss_pred             ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105           15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV   92 (199)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~   92 (199)
                      .+...|+.+  .....+|.++...|++++|+..+.+.  ..|..+..+..+|.++...|++++|+..|+++++++|+++.
T Consensus       195 al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  272 (388)
T d1w3ba_         195 AVTLDPNFL--DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             HHHHCTTCH--HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHhCcccH--HHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            344455533  23356788888888999988888877  56667778888888888899999999999999888898888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105           93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV  172 (199)
Q Consensus        93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  172 (199)
                      ++..+|.++...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            88888988888899999998888888888888888888888888888898899999888888888888888888888888


Q ss_pred             hhhhhhhhhcccccc
Q 029105          173 KRRKHLHLSGLSNDA  187 (199)
Q Consensus       173 ~~~~~a~~~~~~~~~  187 (199)
                      |++++|...+..+.+
T Consensus       353 g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         353 GKLQEALMHYKEAIR  367 (388)
T ss_dssp             TCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888877765554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-22  Score=130.01  Aligned_cols=124  Identities=22%  Similarity=0.332  Sum_probs=114.7

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      .+..+...|..++..|+|++|+.+|++++.++|+++.+|.++|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--hhhhhh
Q 029105          136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK--RRKHLH  179 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~a~  179 (199)
                      ..+|++++|+.+|++++.++|+++.++..++.+....+  .++++.
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888765443  344443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-23  Score=149.00  Aligned_cols=147  Identities=10%  Similarity=0.027  Sum_probs=140.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ..+|.++.+.+.+++|+..+.++  .+|.+..+|+.+|.++...| ++++|+..+++++..+|++..+|.++|.++..+|
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~  126 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR  126 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc
Confidence            35688888999999999999999  89999999999999999887 5999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      ++++|+..+.++++++|++..+|.++|.++...|++++|+.+|+++++++|.+..+|.+++.++...+.+
T Consensus       127 ~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         127 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998877664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=148.59  Aligned_cols=147  Identities=20%  Similarity=0.176  Sum_probs=137.2

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      ...+|.++...|++++|+..|.++  ..|.++.++..+|.++...|++++|+..++.++...|.+...+..+|.++...|
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence            356789999999999999999888  788889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      ++++|+..++++++++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|+
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.4e-22  Score=138.91  Aligned_cols=126  Identities=17%  Similarity=0.088  Sum_probs=118.4

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      .++..+.+++.+|.+|...|++++|+..|++++.++|+++.++.++|.++..+|++++|+..|++++.++|+++.+++++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      |.++..+|++++|+..|+++++.+|.+......++.+....+....
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  157 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQA  157 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999999999999999888888877777665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-21  Score=129.08  Aligned_cols=138  Identities=14%  Similarity=0.023  Sum_probs=122.3

Q ss_pred             hhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA  107 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~  107 (199)
                      .++.|..+...|++++|+..|.++..| ++.+++++|.+++..|++++|+..|+++++++|+++.+|.++|.++.++|++
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~~~-~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            457799999999999999999987544 4678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccc----------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105          108 WNALKAATRATELEQS----------------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus       108 ~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      ++|+..|++++...|.                ...+++++|.++..+|++++|++.+++++.+.|+........+
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~A  161 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  161 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            9999999999976432                3578899999999999999999999999999988644444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.1e-22  Score=134.56  Aligned_cols=104  Identities=29%  Similarity=0.364  Sum_probs=98.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      +..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|++++.++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHH
Q 029105          137 NFGEPDKAIESFERALAIKPDSEE  160 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~  160 (199)
                      .+|++++|+..|++++.++|++..
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHH
Confidence            999999999999999999876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-20  Score=124.11  Aligned_cols=126  Identities=17%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      .+..+...|..++..|+|++|+..|++++...|..               ..++.++|.|+.++|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            46677889999999999999999999999887754               256788999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105          121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS  181 (199)
Q Consensus       121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  181 (199)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....++..+....
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~  152 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK  152 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888877765543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.3e-21  Score=133.77  Aligned_cols=160  Identities=13%  Similarity=-0.019  Sum_probs=130.9

Q ss_pred             hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      .+++|.++...|++++|+..|.++  .+|+++.+++.+|.++...|++++|+..|++++.++|+++.++.++|.++..+|
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            367899999999999999999999  789999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH-----------------------------------
Q 029105          106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER-----------------------------------  150 (199)
Q Consensus       106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-----------------------------------  150 (199)
                      ++++|+..++++++.+|.+......++.++...+..+.+......                                   
T Consensus       120 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (259)
T d1xnfa_         120 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT  199 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877766666665554433322222221                                   


Q ss_pred             -HHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          151 -ALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       151 -al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                       .....|....++.++|.++...|++++|...+..+..
T Consensus       200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             1222234445677888888888888888877665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.3e-21  Score=136.79  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=130.0

Q ss_pred             chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccHHHHHH
Q 029105           52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAATRATELEQSWAEAWIT  130 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~  130 (199)
                      ..|+...++..+|.++...+.+++|+..++++++++|.+..+|.++|.++...|+ +++|+..++++++.+|++..+|..
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            5789999999999999999999999999999999999999999999999999875 999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +|.++..+|++++|+..+.++++++|.+..+|.++|.++..+|++++|...+..+.+.
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998776655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=4e-20  Score=121.49  Aligned_cols=134  Identities=19%  Similarity=0.203  Sum_probs=118.7

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      ..+..+...|..++..|+|.+|+..|.+++...|..               ..++.++|.|+..+|++++|+..+++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            456788899999999999999999999999764432               35678899999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105          120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       120 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      ++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+...++.+.+.....+..+..
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999888877765555444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.85  E-value=4.5e-20  Score=119.39  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=110.4

Q ss_pred             hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105           55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----------------AVLHEQKAQVLLELGDAWNALKAATRAT  118 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al  118 (199)
                      +.+..+...|..++..|+|.+|+..|.+++...+..                ..++.++|.|++++|++++|+..+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            456678889999999999999999999999876533                2477899999999999999999999999


Q ss_pred             hcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105          119 ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR  175 (199)
Q Consensus       119 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  175 (199)
                      .++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+..++++.
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=5e-20  Score=121.15  Aligned_cols=124  Identities=17%  Similarity=0.227  Sum_probs=113.1

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHcc----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNL----------------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL  120 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  120 (199)
                      +..+...|..++..|+|.+|+..|.+++..                +|....++.++|.++.++|++++|+..+++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            445677899999999999999999998753                4566788999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      +|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+...+....+..+
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k  166 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  166 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998888777654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-19  Score=121.45  Aligned_cols=126  Identities=17%  Similarity=0.096  Sum_probs=112.7

Q ss_pred             HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105           58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      ..++..|..+...|+|+.|++.|.+   +.|.++.+++++|.++..+|++++|+..|+++++++|+++.+|+++|.++..
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            3456789999999999999999986   4566789999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          138 FGEPDKAIESFERALAIKPDS----------------EEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       138 ~~~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      +|++++|+..|++++...|.+                .++++++|.++..+|++++|...+..+.
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999875543                4678999999999999999987654443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.8e-20  Score=114.35  Aligned_cols=113  Identities=13%  Similarity=0.077  Sum_probs=102.0

Q ss_pred             HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccccc--HHHHHHHHHHHH
Q 029105           62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG---DAWNALKAATRATELEQSW--AEAWITLGRAQL  136 (199)
Q Consensus        62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~  136 (199)
                      .++..+...+++++|.+.|++++.++|+++.+++++|.++...+   ++.+|+..+++++..+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999998754   5567999999999988765  458999999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105          137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR  174 (199)
Q Consensus       137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  174 (199)
                      .+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999888876653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-20  Score=132.09  Aligned_cols=150  Identities=20%  Similarity=0.177  Sum_probs=128.8

Q ss_pred             hhhhccchhhhhhccccc--chh--hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105           34 SGAELEKNDDNNEHQEPF--DAK--QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN  109 (199)
Q Consensus        34 ~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~  109 (199)
                      .....+.+.+|+..|.++  .+|  .++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence            334556777888877766  233  3467889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-----------HHHHHHHHHHHHhhhhhh
Q 029105          110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-----------ARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~l~~~~~~~~~~~~a  178 (199)
                      |+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..           ++..++.++..+++.+.+
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999988765           456678888888877665


Q ss_pred             hhhcc
Q 029105          179 HLSGL  183 (199)
Q Consensus       179 ~~~~~  183 (199)
                      .....
T Consensus       305 ~~~~~  309 (323)
T d1fcha_         305 GAADA  309 (323)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            54443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.2e-20  Score=113.73  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=103.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      .+.|..++..|++++|+..|.++  .+|.++.++..+|.++...|++++|+..+.+++.++|+++.+|+++|.++..+|+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            45799999999999999999999  8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQL  136 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  136 (199)
                      +++|+..|+++++++|+++.++..++.+..
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999987753

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=6.5e-20  Score=117.45  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=105.8

Q ss_pred             hhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105           64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL----------GDAWNALKAATRATELEQSWAEAWITLGR  133 (199)
Q Consensus        64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~  133 (199)
                      +..+.+.+.|++|+..|+++++++|+++.+++++|.++...          +.+++|+..|+++++++|+++.+++++|.
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            45567788999999999999999999999999999999854          45689999999999999999999999999


Q ss_pred             HHHhcCC-----------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          134 AQLNFGE-----------PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       134 ~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      +|..+|+           +++|+.+|++++.++|++..++..|+.+....+.+.++.+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988764           6899999999999999999999999999988888887654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.81  E-value=1.9e-19  Score=110.24  Aligned_cols=94  Identities=18%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ..+.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..++++++++|+++.+++.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 029105          139 GEPDKAIESFERAL  152 (199)
Q Consensus       139 ~~~~~A~~~~~~al  152 (199)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-18  Score=108.91  Aligned_cols=112  Identities=23%  Similarity=0.300  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH-------HHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA-------EAW  128 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~  128 (199)
                      .+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|+|++|+..+++++.++|.++       .++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3566788999999999999999999999999999999999999999999999999999999999998764       467


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105          129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA  168 (199)
Q Consensus       129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  168 (199)
                      ..+|.++..++++++|+.+|++++..+|+ +.....+..+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~  121 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA  121 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            77888889999999999999999999876 5555555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.5e-19  Score=115.87  Aligned_cols=118  Identities=12%  Similarity=0.048  Sum_probs=107.1

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ...|+.++..|+|++|+..|.++  .+|.++.++..+|.+++..|++++|+..|+++++++|++..++..+|.++..+|+
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence            45699999999999999999999  8899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHh--cCChHHHHH
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLN--FGEPDKAIE  146 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~  146 (199)
                      +++|+..+++++.++|+++.++..++.+...  .+.+++|+.
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888877543  333444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.3e-19  Score=120.85  Aligned_cols=113  Identities=17%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             chHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105           25 DQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL  102 (199)
Q Consensus        25 ~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  102 (199)
                      .....+.|..++..|+|++|+..|.++  .+|.++.++..+|.+|...|++++|+..|++++.++|+++.+|+++|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            444567899999999999999999998  789999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLN  137 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  137 (199)
                      .+|++++|+..|++++.++|++...+...+..+..
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            99999999999999999998755444444443333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.8e-18  Score=110.07  Aligned_cols=117  Identities=15%  Similarity=-0.004  Sum_probs=103.9

Q ss_pred             hhcchhhhhccchhhhhhccccc-----------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-----------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      .+.|..++..|+|++|+..|.++                 ..+....++.++|.+++..|++++|+..+++++.++|+++
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence            46699999999999999999776                 1222345677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      .+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+...+..
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988776665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.74  E-value=2.1e-17  Score=100.98  Aligned_cols=91  Identities=18%  Similarity=0.116  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL  171 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  171 (199)
                      ..++.+|.++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhhhhhhc
Q 029105          172 VKRRKHLHLSG  182 (199)
Q Consensus       172 ~~~~~~a~~~~  182 (199)
                      .|++++|....
T Consensus        97 ~g~~~~A~~~l  107 (112)
T d1hxia_          97 EHNANAALASL  107 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99999987754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1.1e-17  Score=109.74  Aligned_cols=117  Identities=13%  Similarity=0.016  Sum_probs=105.9

Q ss_pred             hhcchhhhhccchhhhhhccccc------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      ...|..++..|+|.+|+..|.++                  ..|....++.++|.++...|++++|+..|+++++++|++
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  110 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN  110 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh
Confidence            45688999999999999988765                  356778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      +.+++++|.++..+|++++|+..|+++++++|++..+...++.+........++.
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887766655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.74  E-value=2.2e-17  Score=108.16  Aligned_cols=123  Identities=13%  Similarity=0.044  Sum_probs=106.0

Q ss_pred             hhcchhhhhccchhhhhhccccc-----------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-----------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA   91 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~   91 (199)
                      .+.|..++..|+|.+|+..|.++                 ..+....++.++|.|++..|++++|+..+++++.++|++.
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH
Confidence            46799999999999999999776                 1122345677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHH-HHHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK-AIESFERA  151 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~-A~~~~~~a  151 (199)
                      .+++++|.++..+|++++|+..|++++.++|+++.++..++.+....+.+.+ ..+.|.+.
T Consensus        99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1          99 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999877776643 33443333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.71  E-value=2e-17  Score=106.71  Aligned_cols=110  Identities=8%  Similarity=-0.025  Sum_probs=98.1

Q ss_pred             hhcchhhhhccchhhhhhccccc------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN   90 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~   90 (199)
                      ...|..++..|+|.+|+..|.++                  ..+....++.++|.+++.+|++++|+..++++++++|.+
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence            45799999999999999998776                  111224567889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ..+++.+|.++..+|++++|+..|++++.++|++..+...++.+...+
T Consensus       101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.7e-16  Score=110.97  Aligned_cols=159  Identities=9%  Similarity=-0.004  Sum_probs=133.3

Q ss_pred             hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~   94 (199)
                      ...|.++...+++++|+..|.++        ..+..+..+..+|.+|...|++++|+..|++++.+.+..      ..++
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  120 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence            34588999999999999999888        345567889999999999999999999999999886554      5778


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH-------H
Q 029105           95 EQKAQVLLE-LGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-------E  160 (199)
Q Consensus        95 ~~la~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~  160 (199)
                      ..+|.++.. .|++++|+..+++++.+.+.      ...++.++|.++..+|++++|+..|++++...|..+       .
T Consensus       121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  200 (290)
T d1qqea_         121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (290)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence            889988865 69999999999999987542      356789999999999999999999999999987764       3


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105          161 ARDDRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       161 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      .+...+.++...+++..|........+
T Consensus       201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         201 YFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            567788888889999988776554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=2.8e-17  Score=105.00  Aligned_cols=114  Identities=13%  Similarity=-0.028  Sum_probs=99.5

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc----------ccHHHHHHHHHHHHccCCCcHHHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED----------GKFREALGKWEAALNLRPENAVLHEQK   97 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~~l~~~~~~~~~~~~l   97 (199)
                      +.+..+.+.+.|++|+..|+++  .+|+++.++..+|.++...          +.+++|+..|+++++++|+++.+++++
T Consensus         2 d~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            3466778889999999999999  8999999999999999854          556899999999999999999999999


Q ss_pred             HHHHHHcCC-----------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHH
Q 029105           98 AQVLLELGD-----------AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK  143 (199)
Q Consensus        98 a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~  143 (199)
                      |.++..+|+           +++|+.+|++++.++|++..++..++.+....+.+.+
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999988764           7999999999999999999999999988654444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.6e-16  Score=113.77  Aligned_cols=144  Identities=13%  Similarity=0.101  Sum_probs=126.5

Q ss_pred             hhhhhhccccc--chhhHHHHHHHHhhH----------HHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC--
Q 029105           41 NDDNNEHQEPF--DAKQLALSFEAQGNN----------LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD--  106 (199)
Q Consensus        41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--  106 (199)
                      .++|+..+.++  .+|++..+|..++.+          +...|++.+|+.++++++..+|+++.+|..+|.++...++  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            47899888888  788888777655544          4445668999999999999999999999999999988775  


Q ss_pred             HHHHHHHHHHHhhcccccHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          107 AWNALKAATRATELEQSWAEAW-ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..++.++|.++..+|++++|......
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8999999999999999988886 56789999999999999999999999999999999999999999999987665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.1e-17  Score=99.85  Aligned_cols=109  Identities=11%  Similarity=-0.139  Sum_probs=96.4

Q ss_pred             hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc---ccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED---GKFREALGKWEAALNLRPEN--AVLHEQKAQVLL  102 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~  102 (199)
                      ++.+.+...+++++|.+.|.++  .+|.++.+++++|.++...   +++.+|+..|++++..+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3456778889999999999999  7899999999999999864   56678999999999998765  458999999999


Q ss_pred             HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105          103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus       103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      ..|++++|+.+|+++++++|++..+...++.+....
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.65  E-value=1.8e-15  Score=97.69  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=86.3

Q ss_pred             HHHHhhHHHhcccHHHHHHHHHHHHccCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----
Q 029105           60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN------------AVLHEQKAQVLLELGDAWNALKAATRATELEQS----  123 (199)
Q Consensus        60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----  123 (199)
                      ....|..++..|+|++|+..|++++++.|..            ..++.++|.++..+|++++|+..+++++.+.|.    
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3345889999999999999999999987764            367899999999999999999999999987553    


Q ss_pred             -------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105          124 -------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS  158 (199)
Q Consensus       124 -------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  158 (199)
                             ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                   34578999999999999999999999999986543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=121.19  Aligned_cols=145  Identities=11%  Similarity=-0.053  Sum_probs=104.3

Q ss_pred             cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      .+......+.|+.++..+.+.  ..|.+...+..+|..+...|+++.|+..+.+++..+|  ..++.++|.++...|+++
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHH
Confidence            455666678889999888877  6788889999999999999999999999999988776  467889999999999999


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      +|+.+|++++.++|+++.+++++|.++...|++.+|+.+|.+++..+|.++.++.+|+.++....+..+
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~  238 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD  238 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999887665433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.4e-16  Score=111.34  Aligned_cols=147  Identities=13%  Similarity=-0.010  Sum_probs=101.8

Q ss_pred             cchhhhhcc--chhhhhhccccc--chhhHHHHH-HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105           31 HGLSGAELE--KNDDNNEHQEPF--DAKQLALSF-EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG  105 (199)
Q Consensus        31 ~g~~~~~~~--~~~~A~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~  105 (199)
                      +|.++...+  ++++|+..+.++  .+|....++ ...|.++...+.+++|+..+++++..+|.+..+|.++|.++...|
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            344444433  466777777666  444444443 456677777777777777777777777777777777777777665


Q ss_pred             C----------------------------------------------------------------HHHHHHHHHHHhhcc
Q 029105          106 D----------------------------------------------------------------AWNALKAATRATELE  121 (199)
Q Consensus       106 ~----------------------------------------------------------------~~~A~~~~~~al~~~  121 (199)
                      +                                                                +.+|+..+.+++..+
T Consensus       193 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            5                                                                555666666677777


Q ss_pred             cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105          122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH  177 (199)
Q Consensus       122 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  177 (199)
                      |.+..++..+|.++...|++++|+.+|+++++++|.+...|..|+..+.....+.+
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~~  328 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK  328 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHHH
Confidence            77777788888888888888888888888888888777777777777665444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-15  Score=88.62  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQS-------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD  164 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  164 (199)
                      +-++.+|.+++..|+|.+|+.+|++++++.|.       ...++.++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            34567777777777777777777777776543       25677778888888888888888888888888888877777


Q ss_pred             HHHHHHHHh
Q 029105          165 RQTALHLVK  173 (199)
Q Consensus       165 l~~~~~~~~  173 (199)
                      ++.+...++
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            776665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-16  Score=96.44  Aligned_cols=94  Identities=17%  Similarity=0.083  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-------HHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-------ARD  163 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~  163 (199)
                      +..+..+|..++..|+|++|+.+|++++.++|+++.++.++|.+|..+|++++|+..+++++.++|.++.       ++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999988765       455


Q ss_pred             HHHHHHHHHhhhhhhhhhccc
Q 029105          164 DRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      .+|.++..++++++|...+-.
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHH
Confidence            566666666677777665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.5e-15  Score=87.65  Aligned_cols=82  Identities=17%  Similarity=0.052  Sum_probs=73.9

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWI  129 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  129 (199)
                      ++.++.+|.+++..|+|.+|+.+|++++++.|.+       ..++.++|.++.+.|++++|+..++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4568899999999999999999999999886543       688999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 029105          130 TLGRAQLNF  138 (199)
Q Consensus       130 ~lg~~~~~~  138 (199)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=9.4e-14  Score=98.35  Aligned_cols=130  Identities=15%  Similarity=-0.020  Sum_probs=109.5

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHHHccC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAALNLR------PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW------  124 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------  124 (199)
                      +..+...|.++...|+|++|++.|.+++.+.      +....++.++|.+|..+|++++|+.++++++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            5567778999999999999999999999873      2235789999999999999999999999999987654      


Q ss_pred             HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          125 AEAWITLGRAQLN-FGEPDKAIESFERALAIKPD------SEEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       125 ~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      ..++..+|.++.. .|++++|+..|++++.+.+.      ...++.++|.++..+|++++|...+....
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~  185 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI  185 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            5678889988855 69999999999999987432      24568999999999999999988765443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.6e-13  Score=95.49  Aligned_cols=127  Identities=13%  Similarity=0.051  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      |.+...+...+......|+++.|...|++++...|.+. .+|..++......|+++.|...|.+++...|.+...+...|
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a  175 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  175 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34444445555555555555555555555555554432 23445555555555555555555555555555544444444


Q ss_pred             HHHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105          133 RAQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       133 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      .... ..|+.+.|...|++++...|.++..|...+..+...|+.++|..
T Consensus       176 ~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~  224 (308)
T d2onda1         176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHH
Confidence            4322 23445555555555555555555555555555555555444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=4.3e-12  Score=83.25  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=93.4

Q ss_pred             hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH----------------------HHHHHHHHHHHHcCCHHHHH
Q 029105           54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA----------------------VLHEQKAQVLLELGDAWNAL  111 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------------~~~~~la~~~~~~~~~~~A~  111 (199)
                      -.....+...|......|++++|+..|.+++.+.+++.                      .++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34567888999999999999999999999999866442                      57788999999999999999


Q ss_pred             HHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH-------HhcCCC
Q 029105          112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA-------LAIKPD  157 (199)
Q Consensus       112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------l~~~p~  157 (199)
                      .++++++..+|.+..+|..++.++...|++.+|+..|+++       +-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       446675

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3e-12  Score=91.19  Aligned_cols=155  Identities=9%  Similarity=-0.116  Sum_probs=131.2

Q ss_pred             hhcchhhhhccchhhhhhccccc--chhh-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-c
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF--DAKQ-LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-L  104 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~  104 (199)
                      ...+......|+++.|...|.++  ..|. ...++...+......|+++.|...|.+++...|.+...+...|..... .
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~  182 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            34467778889999999999887  3443 345788899999999999999999999999999999999999887554 6


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHhhhhhhhh
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE----EARDDRQTALHLVKRRKHLHL  180 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~a~~  180 (199)
                      |+.+.|..+|++++..+|+++..|...+......|+++.|...|++++...|.++    ..|..........|+.+.+..
T Consensus       183 ~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8999999999999999999999999999999999999999999999999877543    467777777777787776665


Q ss_pred             hcc
Q 029105          181 SGL  183 (199)
Q Consensus       181 ~~~  183 (199)
                      ...
T Consensus       263 ~~~  265 (308)
T d2onda1         263 VEK  265 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.6e-13  Score=100.06  Aligned_cols=112  Identities=14%  Similarity=0.074  Sum_probs=85.1

Q ss_pred             HhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105           27 QDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD  106 (199)
Q Consensus        27 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~  106 (199)
                      ...++|..+...|++++|+..+..+..+....++..+|.++...|++++|+.+|++++.++|++..+++++|.++...|+
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~  201 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD  201 (497)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC
Confidence            34577999999999999999998886666678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105          107 AWNALKAATRATELEQSWAEAWITLGRAQLNF  138 (199)
Q Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  138 (199)
                      +.+|+.+|.+++..+|..+.++.+++.++...
T Consensus       202 ~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         202 HLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.39  E-value=2.5e-13  Score=94.59  Aligned_cols=119  Identities=13%  Similarity=0.067  Sum_probs=69.8

Q ss_pred             HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105           66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI  145 (199)
Q Consensus        66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~  145 (199)
                      ..+..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666665555554444


Q ss_pred             HHHHHHHhc-CCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105          146 ESFERALAI-KPDSEEARDDRQTALHLVKRRKHLHLSGLS  184 (199)
Q Consensus       146 ~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~  184 (199)
                      ..+.+.... .|.....+...+.++...|+.++|.....+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            333322222 333444455555666666666666554433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.36  E-value=2.5e-13  Score=94.56  Aligned_cols=130  Identities=12%  Similarity=-0.057  Sum_probs=114.2

Q ss_pred             hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105           33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA  110 (199)
Q Consensus        33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A  110 (199)
                      ...+..|++++|+..++++  .+|.++.++..+|.+++..|++++|+..++++++++|++...+..++.++...+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4567789999999999999  89999999999999999999999999999999999999999999999998888877777


Q ss_pred             HHHHHHHhh-cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105          111 LKAATRATE-LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR  162 (199)
Q Consensus       111 ~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  162 (199)
                      .....+... ..|.....+...+.++...|++++|+..++++.+..|..+..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            665544333 3567777888899999999999999999999999999876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=6e-13  Score=85.60  Aligned_cols=101  Identities=21%  Similarity=-0.005  Sum_probs=84.2

Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHhhccccc------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105           92 VLHEQK--AQVLLELGDAWNALKAATRATELEQSW------------AEAWITLGRAQLNFGEPDKAIESFERALAIKPD  157 (199)
Q Consensus        92 ~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  157 (199)
                      .++..+  |..++..|+|++|+..|++++++.|+.            ..++.++|.+|..+|++++|+..+++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            444444  788889999999999999999987753            457899999999999999999999999987432


Q ss_pred             -----------cHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhc
Q 029105          158 -----------SEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVV  192 (199)
Q Consensus       158 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  192 (199)
                                 ...++.++|.++..+|++++|...+..+.+.....
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                       23468999999999999999999888877665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2e-11  Score=87.40  Aligned_cols=158  Identities=9%  Similarity=-0.014  Sum_probs=119.9

Q ss_pred             hcchhhhhccchhhhhhccccc--ch-----hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHH
Q 029105           30 EHGLSGAELEKNDDNNEHQEPF--DA-----KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQ   96 (199)
Q Consensus        30 ~~g~~~~~~~~~~~A~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~   96 (199)
                      ..|.++...|++++|+..++++  ..     +....++..+|.+++..|++++|+..|++++.+.+..      ...+..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            3477788889999999888776  22     2235677888999999999999999999888764432      356778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-----HHHHH
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-----EEARD  163 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~  163 (199)
                      ++.++...|++..|...+.+++.+.+.        ....+..+|.++...|+++.|...+.+++...+..     ..+..
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            888888999999999999888876432        33466778888999999999999998888776543     45677


Q ss_pred             HHHHHHHHHhhhhhhhhhcccccc
Q 029105          164 DRQTALHLVKRRKHLHLSGLSNDA  187 (199)
Q Consensus       164 ~l~~~~~~~~~~~~a~~~~~~~~~  187 (199)
                      ..+.++...+.+.++.........
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHH
Confidence            778888888888887766555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.5e-11  Score=88.07  Aligned_cols=160  Identities=13%  Similarity=0.009  Sum_probs=125.6

Q ss_pred             hhcchhhhhccchhhhhhccccc-------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cHHHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPF-------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NAVLH   94 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~   94 (199)
                      ..+|.++...|+++.+...+...       ..+.....+...+..+...+++..+...+.++....+.       ...++
T Consensus       137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~  216 (366)
T d1hz4a_         137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN  216 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence            45688888899998888877665       33445667788888889999999999888887765332       24567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCcHHHHHH
Q 029105           95 EQKAQVLLELGDAWNALKAATRATELEQS----WAEAWITLGRAQLNFGEPDKAIESFERALAI------KPDSEEARDD  164 (199)
Q Consensus        95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~  164 (199)
                      ..+|.++...|++++|...+++++...|.    ....+.++|.++...|++++|+..+++++..      .|....++..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  296 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL  296 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence            78888899999999999999999887654    3456778899999999999999999988743      3555678899


Q ss_pred             HHHHHHHHhhhhhhhhhcccccch
Q 029105          165 RQTALHLVKRRKHLHLSGLSNDAN  188 (199)
Q Consensus       165 l~~~~~~~~~~~~a~~~~~~~~~~  188 (199)
                      +|.++...|++++|...+..+.+.
T Consensus       297 la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999988877665544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=2.8e-10  Score=74.45  Aligned_cols=95  Identities=16%  Similarity=0.006  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----------------------HHHHHHHHHHHHhcCChHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSW----------------------AEAWITLGRAQLNFGEPDKAIESF  148 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~~A~~~~  148 (199)
                      ...+...|......|++++|++.|.+++.+.++.                      ..++..++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4677889999999999999999999999986532                      357889999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105          149 ERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN  185 (199)
Q Consensus       149 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  185 (199)
                      ++++..+|.+..+|..++.++...|++.+|...+...
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999998876554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.11  E-value=1.2e-09  Score=75.56  Aligned_cols=152  Identities=9%  Similarity=-0.023  Sum_probs=99.1

Q ss_pred             hhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105           28 DQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLE  103 (199)
Q Consensus        28 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~  103 (199)
                      .+++|..++..+++++|+..|+++....++.+++.+|.++..    ..++..|..+++.+....  ++.+...+|.++..
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~   82 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS   82 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccccccc
Confidence            467788888999999999999988656677888888888876    567777777776665432  33333334333332


Q ss_pred             ----cCCHHHH---------------------------------------------------------------------
Q 029105          104 ----LGDAWNA---------------------------------------------------------------------  110 (199)
Q Consensus       104 ----~~~~~~A---------------------------------------------------------------------  110 (199)
                          ..+...|                                                                     
T Consensus        83 ~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~  162 (265)
T d1ouva_          83 GQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDL  162 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCccccc
Confidence                1222233                                                                     


Q ss_pred             ---HHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----Hhhhhhhh
Q 029105          111 ---LKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL----VKRRKHLH  179 (199)
Q Consensus       111 ---~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~  179 (199)
                         ...++.+.  .+.++.+.+++|.+|..    ..++++|+.+|+++.+.  +++.+.++||.++..    .+++.+|.
T Consensus       163 ~~~~~~~~~a~--~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~  238 (265)
T d1ouva_         163 KKALASYDKAC--DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAI  238 (265)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred             ccchhhhhccc--cccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHH
Confidence               33333332  23456677888888776    56788888888888776  457788888888874    22555665


Q ss_pred             hhcccc
Q 029105          180 LSGLSN  185 (199)
Q Consensus       180 ~~~~~~  185 (199)
                      ..+..+
T Consensus       239 ~~~~kA  244 (265)
T d1ouva_         239 ENFKKG  244 (265)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=4.8e-09  Score=63.18  Aligned_cols=83  Identities=13%  Similarity=0.032  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105           91 AVLHEQKAQVLLELGD---AWNALKAATRATELEQSWA-EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ  166 (199)
Q Consensus        91 ~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  166 (199)
                      ....+++|.++.+...   .++|+..++.++..+|.+. +.++.+|..|..+|+|++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            5677888888876544   5688888888888888654 78889999999999999999999999999999888877766


Q ss_pred             HHHHHHh
Q 029105          167 TALHLVK  173 (199)
Q Consensus       167 ~~~~~~~  173 (199)
                      .|..++.
T Consensus       115 ~Ie~~~~  121 (124)
T d2pqrb1         115 MVEDKIQ  121 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=4.3e-09  Score=63.37  Aligned_cols=79  Identities=10%  Similarity=-0.124  Sum_probs=69.1

Q ss_pred             HHHHHHHhhHHHhc---ccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105           57 ALSFEAQGNNLAED---GKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG  132 (199)
Q Consensus        57 ~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  132 (199)
                      +++.+..|.++.+.   .+..+|+..++.++..+|.+. ++++++|..+++.|+|++|..+++++++++|++..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            56788888888765   566799999999999998764 89999999999999999999999999999999999877665


Q ss_pred             HHH
Q 029105          133 RAQ  135 (199)
Q Consensus       133 ~~~  135 (199)
                      .+.
T Consensus       115 ~Ie  117 (124)
T d2pqrb1         115 MVE  117 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.83  E-value=2.4e-08  Score=61.80  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=81.3

Q ss_pred             cchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q 029105           39 EKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDAWNALKAA  114 (199)
Q Consensus        39 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~  114 (199)
                      .++++|+..|.++..-.++.+.+.++.  ....+.++|+.+++++.+.  +++.+.+.+|.+|..    ..++.+|+.+|
T Consensus         7 kd~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            367778887777733344555566654  3456788888888887764  567788888888875    56688888888


Q ss_pred             HHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC
Q 029105          115 TRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPD  157 (199)
Q Consensus       115 ~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~  157 (199)
                      +++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+....
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             hhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            888765  567778888888876    45788888888888776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.78  E-value=1.7e-07  Score=64.50  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDAWNALKAATRATELEQSWAEAWITL  131 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  131 (199)
                      +|.+++.+|..++..+++++|+++|+++.+.  +++.+++.||.++..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            3678999999999999999999999999775  578999999999997    77999999999998764  467788888


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105          132 GRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALH  170 (199)
Q Consensus       132 g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  170 (199)
                      |.++..    ..+.+.|...++++....+  ..+...++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~  117 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYH  117 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccccc
Confidence            888765    4677899999999987654  344455555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=3.9e-07  Score=56.15  Aligned_cols=109  Identities=14%  Similarity=0.020  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHH
Q 029105           71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIE  146 (199)
Q Consensus        71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~  146 (199)
                      .++++|+.+|+++.+..  ++.+.+.++.  ....++++|+..++++.+.  +++.+.+.+|.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47899999999998874  4556667764  3467899999999999875  678899999999986    567899999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHH----Hhhhhhhhhhcccccc
Q 029105          147 SFERALAIKPDSEEARDDRQTALHL----VKRRKHLHLSGLSNDA  187 (199)
Q Consensus       147 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~  187 (199)
                      +|+++.+.  .++.+...|+.+|..    ..+..+|...+..+.+
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            99999875  568889999999876    3456666665555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.50  E-value=0.22  Score=34.64  Aligned_cols=130  Identities=12%  Similarity=0.029  Sum_probs=77.4

Q ss_pred             hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105           29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW  108 (199)
Q Consensus        29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~  108 (199)
                      ...|...++.|.|+.|...|....+      +..+..++...+++..|.+.+.+.     +++..|......+.......
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHH
Confidence            3457778888888888888865433      223446667788888888877765     35667777777777666655


Q ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105          109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK  173 (199)
Q Consensus       109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  173 (199)
                      -+. .....+..+|+   -.......|...|.+++.+..++.++...+.+...+..++.++.+.+
T Consensus        87 la~-i~~~~~~~~~d---~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          87 LAQ-MCGLHIVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHH-HTTTTTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHhhcCHH---HHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            442 22222223333   33345566677788888888888887777777777777777776543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.18  Score=36.48  Aligned_cols=113  Identities=12%  Similarity=-0.007  Sum_probs=81.8

Q ss_pred             HHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----------------------
Q 029105           67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW----------------------  124 (199)
Q Consensus        67 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------  124 (199)
                      ....+++..+...+..........+...+.+|..+...|+.++|...|..+... ++.                      
T Consensus       295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~  373 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQ  373 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred             HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCc
Confidence            455678888888877654433344677789999999999999999888887653 110                      


Q ss_pred             -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105          125 -------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG  182 (199)
Q Consensus       125 -------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  182 (199)
                             ...-+..+..+...|....|...+..++..-  ++.-...++.+....|.++.|....
T Consensus       374 ~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~  436 (450)
T d1qsaa1         374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT  436 (450)
T ss_dssp             CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHH
Confidence                   1123456677888999999999888877543  4556678888899999988877543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.073  Score=38.66  Aligned_cols=122  Identities=11%  Similarity=0.054  Sum_probs=78.8

Q ss_pred             cchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105           31 HGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL  104 (199)
Q Consensus        31 ~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  104 (199)
                      .|.......+.+.|...+...      ..+........++..+...+..+.+...+........+..... .++......
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-w~~~~al~~  298 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGT  298 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH-HHHHHHHHc
Confidence            344444455666666655443      2222233333444455556777778777777665554444333 333345667


Q ss_pred             CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105          105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA  153 (199)
Q Consensus       105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  153 (199)
                      +++..+...+...-......+...|-+|..+...|+.+.|...|..+..
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            8999998888776544445677789999999999999999999998765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.38  E-value=2.3  Score=29.33  Aligned_cols=126  Identities=12%  Similarity=0.027  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105           56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  135 (199)
                      ....|......+....++.-|..+ ...+.   .++.-....-..+...|.+++.+.+++.++...+.+...+..++.+|
T Consensus        68 ~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ly  143 (336)
T d1b89a_          68 STRTWKEVCFACVDGKEFRLAQMC-GLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY  143 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence            355677777777776665543221 11112   23444455667778899999999999999988888888888999988


Q ss_pred             HhcCChHHHHHHHHHH-HhcCCCc-------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105          136 LNFGEPDKAIESFERA-LAIKPDS-------EEARDDRQTALHLVKRRKHLHLSGLSND  186 (199)
Q Consensus       136 ~~~~~~~~A~~~~~~a-l~~~p~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  186 (199)
                      .+.+ .++=++.++.. -..++..       ...|..+..+|.+.|++++|....+...
T Consensus       144 ak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~  201 (336)
T d1b89a_         144 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  201 (336)
T ss_dssp             HTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc
Confidence            7654 33333333332 1122111       1125667778888899988877666554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.70  E-value=0.48  Score=25.14  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=14.7

Q ss_pred             HHHHHHHhhHHHhcccHHHHHHHHHHH
Q 029105           57 ALSFEAQGNNLAEDGKFREALGKWEAA   83 (199)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~   83 (199)
                      +..+-..+.-+...|.|++|+++.+++
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA   34 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKA   34 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444555555666666666555544

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.45  E-value=0.57  Score=24.85  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATE  119 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~  119 (199)
                      ..+...|.-+...|+|++|+++.+++..
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455667777888888888887766553

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.27  E-value=0.86  Score=33.50  Aligned_cols=54  Identities=26%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105          125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL  178 (199)
Q Consensus       125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a  178 (199)
                      .......+.-.+..|+|..|.+....++..+|++.++...++.++.++|...+.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~  483 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN  483 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcC
Confidence            445677888888999999999999999999999999999999999999987664

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.60  E-value=1.7  Score=31.85  Aligned_cols=51  Identities=14%  Similarity=-0.014  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH
Q 029105           92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD  142 (199)
Q Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  142 (199)
                      ......+.-.+..|+|.-|.+....++..+|++..+...++.+|.++|.-.
T Consensus       431 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~  481 (505)
T d2cfua2         431 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA  481 (505)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhC
Confidence            556677888889999999999999999999999999999999998876544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.18  E-value=3.6  Score=24.11  Aligned_cols=56  Identities=13%  Similarity=0.069  Sum_probs=38.8

Q ss_pred             HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105          100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK  155 (199)
Q Consensus       100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  155 (199)
                      .+..+|+-++-.+.+...++...-+|+.+..+|.+|.+.|...+|-+.+.+|.+..
T Consensus        95 ~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          95 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            44566666666667676666555567788888888888888888888877776543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.47  E-value=1.9  Score=23.59  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=12.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105           97 KAQVLLELGDAWNALKAATRATELEQS  123 (199)
Q Consensus        97 la~~~~~~~~~~~A~~~~~~al~~~p~  123 (199)
                      +|..+...|+++++...|-+|+...|.
T Consensus        26 lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          26 LGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            344444444444444444444444443