Citrus Sinensis ID: 029114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccccccccccccccccccccccccccccccEHccccccccccccccccccccEEccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mlqthhllslnfpftvshhpqklnflqkptislsafprrrpliepyclaqaqepttnitapttseegpvelpqsifattdepsslQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKAlgsssidakgppspvqaLLGGLTAGVIAIILYKFTTTIEAALNrqtisdnfsvRQITITISLP
Flexible Loop (DISEMBL)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAkrakelkfrssgakkslkdeALDNLKALgsssidakgppSPVQALLGGLTAGVIAIILYKFTTTIEAALnrqtisdnfsvrqititislp
Low Complexity Region (SEG)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVflfralrrrakrakelkfrSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Disordered region (IsUnstruct)
*****HLLSLNFPFTVSHHPQKLNFLQKPTISLSAF************************************************LQVATSVLLTGAISVFLFRALRR********************************************QALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITI***
Disordered Region (DISOPRED)
*********LNFPFTVSHHPQKLNF******************EPYCLAQAQ***************PVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRA*******************************************ALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Disordered Region (DISEMBL)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Disordered Region (DISPRO)
*L*THHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNIT******EGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRS*****************LGSSSI**KGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQITITISLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
449457015	282	PREDICTED: uncharacterized protein LOC10	0.969	0.684	0.624	1e-55
118488906	238	unknown [Populus trichocarpa x Populus d	0.964	0.806	0.609	3e-54
225461564	277	PREDICTED: uncharacterized protein LOC10	0.688	0.494	0.756	4e-52
224116710	211	predicted protein [Populus trichocarpa]	0.618	0.582	0.813	3e-51
356544064	277	PREDICTED: uncharacterized protein LOC10	0.879	0.631	0.603	3e-50
255564541	285	conserved hypothetical protein [Ricinus	0.974	0.680	0.603	2e-47
21617902	266	unknown [Arabidopsis thaliana]	0.929	0.695	0.545	7e-46
297834372	261	hypothetical protein ARALYDRAFT_478942 [	0.929	0.708	0.536	7e-46
18400636	266	uncharacterized protein [Arabidopsis tha	0.929	0.695	0.545	1e-45
388496044	230	unknown [Medicago truncatula]	0.653	0.565	0.625	2e-40

>gi|449457015|ref|XP_004146244.1| PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus] gi|449495512|ref|XP_004159863.1| PREDICTED: uncharacterized LOC101221005 [Cucumis sativus]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 150/205 (73%), Gaps = 12/205 (5%)

Query: 1   MLQTHHLLSLNFP-FTVS--HHPQKLNFLQKPTISLSAFPR------RRPLIEPYCLAQA 51
           M  T +LLS NFP FT+S   +  KL FL  PT +LS+  R        PL    C    
Sbjct: 1   MWHTQNLLSSNFPLFTLSPPTYNHKL-FLSPPT-TLSSLHRPITFHSVSPLTNHRCFCLP 58

Query: 52  QEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           Q  T    A    + GPVELP +IFATTD+PSSLQVATSVLLTGAISVFLFR+LRRRAKR
Sbjct: 59  QF-TDLADATFLDDNGPVELPPTIFATTDDPSSLQVATSVLLTGAISVFLFRSLRRRAKR 117

Query: 112 AKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFT 171
            KELKFRS G KKSLK+EA+D+LKA+ +  I++K  PSP+QA LG + AGVIA+ILYKFT
Sbjct: 118 VKELKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFT 177

Query: 172 TTIEAALNRQTISDNFSVRQITITI 196
           TTIEA+LNRQT+SDNFSVRQ+TITI
Sbjct: 178 TTIEASLNRQTVSDNFSVRQLTITI 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488906|gb|ABK96262.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/205 (60%), Positives = 149/205 (72%), Gaps = 13/205 (6%)

Query: 2   LQTHHLLSLN---FPFT---VSHHPQKLNFLQKPTI----SLSAFPRRRPLIEPYCLAQA 51
           LQ H+   L+   FP +    +HH   L FL +P I    +LSA PR RP  +P  L  A
Sbjct: 4   LQCHNFHPLSPQIFPLSHHHTNHHLYPLKFLYRPPIFTPFTLSALPRSRP--DP-PLWLA 60

Query: 52  QEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           Q P              +    SIFAT+D+PSS+QVATSVLLTGAISVFLFR+LRRRAKR
Sbjct: 61  QLPEQAPEPEEEGPIEILRSSPSIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRAKR 120

Query: 112 AKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFT 171
           +KELKFRSSGAKK+LK+EALD+LK  GS+ ID K PPSPVQA LG ++AGVIA+ILYKFT
Sbjct: 121 SKELKFRSSGAKKTLKEEALDSLKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFT 180

Query: 172 TTIEAALNRQTISDNFSVRQITITI 196
           TTIEA+LNRQT+SDNFSVRQIT+T+
Sbjct: 181 TTIEASLNRQTVSDNFSVRQITVTV 205

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461564|ref|XP_002282834.1| PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera] gi|302142945|emb|CBI20240.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 124/144 (86%), Gaps = 7/144 (4%)

Query: 51  AQEPTTNITAPTTSEEGPVELP---QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRR 107
           AQ P T  TAP   EEGP+ELP    SIFAT D+P+ LQVATSVLLTGAISVFLFR++RR
Sbjct: 53  AQVPDTTTTAP---EEGPIELPPSSSSIFATNDDPTPLQVATSVLLTGAISVFLFRSIRR 109

Query: 108 RAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIIL 167
           R KRAKEL+FRSSG KK+LK+EALD+LKA+GS S+ A  PPSPVQALLGG+TAGVIA+IL
Sbjct: 110 RVKRAKELRFRSSGVKKTLKEEALDSLKAMGSGSVKA-APPSPVQALLGGITAGVIALIL 168

Query: 168 YKFTTTIEAALNRQTISDNFSVRQ 191
           YKFT TIEA+LNRQT+SDNFSVRQ
Sbjct: 169 YKFTITIEASLNRQTVSDNFSVRQ 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116710|ref|XP_002317372.1| predicted protein [Populus trichocarpa] gi|222860437|gb|EEE97984.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/123 (81%), Positives = 116/123 (94%)

Query: 74  SIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDN 133
           SIFAT+D+PSS+QVATSVLLTGAISVFLFR+LRRRAKR+KELKFRSSGAKK+LK+EALD+
Sbjct: 16  SIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRSKELKFRSSGAKKTLKEEALDS 75

Query: 134 LKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTISDNFSVRQIT 193
           LK  GS+ ID K PPSPVQA LG ++AGVIA+ILYKF+TTIEA+LNRQT+SDNFSVRQIT
Sbjct: 76  LKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFSTTIEASLNRQTVSDNFSVRQIT 135

Query: 194 ITI 196
           IT+
Sbjct: 136 ITV 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544064|ref|XP_003540475.1| PREDICTED: uncharacterized protein LOC100799393 [Glycine max]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 32/207 (15%)

Query: 5   HHLLSLNFPFTVSHHPQK--LNFL----QKPTI----SLSAFPRRRPLIEPYCLAQAQEP 54
           HHLL   FP T++HH  K  L+ L     KPTI    S SA P       P+    A   
Sbjct: 8   HHLL---FPLTLAHHKVKPPLSILPPLHHKPTILHSVSASAIP-------PWAAQLADAA 57

Query: 55  TTNITAPTTSEEGPVELP----QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               T      EGPVELP     SIFAT+D+PS +QVA+SVLLTGA+SVFLFR+LRRRA+
Sbjct: 58  ADIDT------EGPVELPFSSTPSIFATSDDPSPIQVASSVLLTGAVSVFLFRSLRRRAQ 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAK-GPPSPVQALLGGLTAGVIAIILYK 169
           R K+ +FRSSG +KS+K+EALD+LKA+GS+S+ AK    SPVQALLGG++AGVIA+ILYK
Sbjct: 112 RVKQSQFRSSG-EKSIKEEALDSLKAMGSASVKAKEDSASPVQALLGGISAGVIALILYK 170

Query: 170 FTTTIEAALNRQTISDNFSVRQITITI 196
           F TTIEAALNRQTISDNFSVRQITITI
Sbjct: 171 FATTIEAALNRQTISDNFSVRQITITI 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564541|ref|XP_002523266.1| conserved hypothetical protein [Ricinus communis] gi|223537479|gb|EEF39105.1| conserved hypothetical protein [Ricinus communis]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 150/207 (72%), Gaps = 13/207 (6%)

Query: 1   MLQTHHLLS--LNFPFTVSHHPQK-----LNFLQKPTISLSAFPRRRPLIEPYCLAQAQE 53
           ML  HH +     FP    HH         +   KPT SLS F    P  +P     ++ 
Sbjct: 1   MLHCHHYIPSPQFFPRNHHHHTSTPYLSLTSSFSKPT-SLSTF-SALPPSKPDIWLASEP 58

Query: 54  PTTNITAPTTSEEGPVELP----QSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRA 109
                 +P+  E+GP+ELP     SIFATTD+PS +QVATSVLLTG+I VFLFRALRRRA
Sbjct: 59  TPVTPPSPSPEEDGPIELPFPSSPSIFATTDDPSPIQVATSVLLTGSIGVFLFRALRRRA 118

Query: 110 KRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYK 169
           KRAKELKFRSSGAKK++K+EALD+LKA+GS+SIDA+ PPSP+Q  LGG++A VIA+ILYK
Sbjct: 119 KRAKELKFRSSGAKKTMKEEALDSLKAMGSASIDAQKPPSPLQTFLGGVSAAVIALILYK 178

Query: 170 FTTTIEAALNRQTISDNFSVRQITITI 196
           FTTTIEAALNRQT+SDNFSVRQITIT+
Sbjct: 179 FTTTIEAALNRQTVSDNFSVRQITITV 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617902|gb|AAM66952.1| unknown [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 143/207 (69%), Gaps = 22/207 (10%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E       
Sbjct: 3   VLQSHQCL-FSLPYRL--RPTRL---ISPIHSLSSFTRIRPGI--IRLSAVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL+FRS+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELQFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSVRQITITI 196
           FT T+E+ LNRQTISDNFSVRQIT+T+
Sbjct: 172 FTVTVESGLNRQTISDNFSVRQITVTV 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834372|ref|XP_002885068.1| hypothetical protein ARALYDRAFT_478942 [Arabidopsis lyrata subsp. lyrata] gi|297330908|gb|EFH61327.1| hypothetical protein ARALYDRAFT_478942 [Arabidopsis lyrata subsp. lyrata]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 142/207 (68%), Gaps = 22/207 (10%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H        FT+ H  +    +  P  SLS+F R RP  +   ++  +E       
Sbjct: 3   VLQSHQC-----RFTLPHRLRPTRLIS-PIHSLSSFTRIRP--DRIRVSVVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPPSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL+FRS+GAKKSLK+EA+DNLKALGS+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELRFRSTGAKKSLKEEAMDNLKALGSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSVRQITITI 196
           FT T+E+ LNRQTISDNFSVRQIT+T+
Sbjct: 172 FTVTVESGLNRQTISDNFSVRQITVTV 198

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400636|ref|NP_566500.1| uncharacterized protein [Arabidopsis thaliana] gi|87116616|gb|ABD19672.1| At3g15110 [Arabidopsis thaliana] gi|332642098|gb|AEE75619.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 142/207 (68%), Gaps = 22/207 (10%)

Query: 1   MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
           +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E       
Sbjct: 3   VLQSHQCL-FSLPYRL--RPTRL---ISPIHSLSSFTRIRPGI--IRLSAVKEIAD---V 51

Query: 61  PTTSEEGPVELPQS----------IFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAK 110
               E+GP+ELP S          IFAT+D+P+ LQ+ATSVLLTGAI+VFL R++RRRAK
Sbjct: 52  AEVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query: 111 RAKELKFRSSGAKKSLKDEALDNLKALGSSSID-AKGPPSPVQALLGGLTAGVIAIILYK 169
           RAKEL FRS+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct: 112 RAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query: 170 FTTTIEAALNRQTISDNFSVRQITITI 196
           FT T+E+ LNRQTISDNFSVRQIT+T+
Sbjct: 172 FTVTVESGLNRQTISDNFSVRQITVTV 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496044|gb|AFK36088.1| unknown [Medicago truncatula]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 113/136 (83%), Gaps = 6/136 (4%)

Query: 66  EGPVELPQ----SIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSG 121
           +GP+E+P     S+ ++TD+PS +Q+A S+LLTGAISV LFR+ RRRAKR K+ +FRSSG
Sbjct: 57  DGPIEIPYDSTPSLLSSTDDPSFIQIAASLLLTGAISVLLFRSFRRRAKRLKQTQFRSSG 116

Query: 122 AKKSLKDEALDNLKALGSSSIDA-KGPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNR 180
            +KS+K+EAL+ LKA+G++SI+  KGPPSPVQ  LG ++AGVI++ILYKF T IEA L+R
Sbjct: 117 -EKSVKEEALETLKAMGTASIETTKGPPSPVQTFLGAISAGVISLILYKFATIIEAGLSR 175

Query: 181 QTISDNFSVRQITITI 196
           QTISD+FS RQITIT+
Sbjct: 176 QTISDDFSARQITITV 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2083676	266	AT3G15110 "AT3G15110" [Arabido	0.929	0.695	0.473	1.2e-35

TAIR|locus:2083676 AT3G15110 "AT3G15110" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 98/207 (47%), Positives = 127/207 (61%)

Query:     1 MLQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITA 60
             +LQ+H  L  + P+ +   P +L     P  SLS+F R RP I    L+  +E   ++  
Sbjct:     3 VLQSHQCL-FSLPYRL--RPTRLI---SPIHSLSSFTRIRPGI--IRLSAVKE-IADVAE 53

Query:    61 PTTSEEGPVELP----------QSIFATTDEPSSLQVATSVLLTGAISVXXXXXXXXXXX 110
                 E+GP+ELP           SIFAT+D+P+ LQ+ATSVLLTGAI+V           
Sbjct:    54 --VEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAK 111

Query:   111 XXXXXXXXSSGAKKSLKDEALDNLKALGSSSIDA-KGPPSPVQALLGGLTAGVIAIILYK 169
                     S+GAKKSLK+EA+DNLKAL S+ I+     PS  QA LG + AGVIA+ILYK
Sbjct:   112 RAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYK 171

Query:   170 FTTTIEAALNRQTISDNFSVRQITITI 196
             FT T+E+ LNRQTISDNFSVRQIT+T+
Sbjct:   172 FTVTVESGLNRQTISDNFSVRQITVTV 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       180   0.00092  109 3  11 23  0.46    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  544 (58 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.87u 0.10s 16.97t   Elapsed:  00:00:01
  Total cpu time:  16.87u 0.10s 16.97t   Elapsed:  00:00:01
  Start:  Fri May 10 06:26:00 2013   End:  Fri May 10 06:26:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027754001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (277 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF11282	82	DUF3082: Protein of unknown function (DUF3082); In	99.71

>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function

Probab=99.71  E-value=1.4e-18  Score=130.64  Aligned_cols=52  Identities=33%  Similarity=0.541  Sum_probs=51.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcceeEEEEEeeeC
Q 029114          147 PPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVRQITITISL  198 (199)
Q Consensus       147 ppSPlq~l~GaviAG~IA~~LY~fTtaIaaSFa~qpls-DN~tarnIaItVRT  198 (199)
                      +|||+|||+||++||+||+++|+||++|+++|++||++ ||++|+||+++|||
T Consensus         1 ~~~Pl~~l~Ga~~ag~la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRT   53 (82)
T PF11282_consen    1 KPTPLRCLSGALIAGGLAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRT   53 (82)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998 99999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 36/212 (16%), Positives = 61/212 (28%), Gaps = 40/212 (18%)

Query: 2   LQTHHLLSLNFPFTVSHHPQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQEPTTNITAP 61
             ++ +      F +      L     P   L    +    I+P       + ++NI   
Sbjct: 171 CLSYKVQC-KMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNI--K 224

Query: 62  TTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLF--RAL---RRRA-----KR 111
                   EL + +  +    + L V  +V    A + F    + L   R +        
Sbjct: 225 LRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 112 AKELKFRSSGAKKSL-KDEALDNL-KALGSSSIDAKGPPSPVQALLGG-LTAGVIA---- 164
           A            +L  DE    L K L     D      P + L        +IA    
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIR 338

Query: 165 -----------IILYKFTTTIEAALNRQTISD 185
                      +   K TT IE++LN    ++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00