Citrus Sinensis ID: 029123

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20

MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN

cEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEcccEEEEEcccccccccccccccccccEEEEEccEEEcHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEEEEccccEEEEEEEccccEEEEEEEEccccEEEEccHHHHHHHHcccccccccccccccc

ccEEEccccccccHHHccccccccccccccHHHHHHHHHHHcccccEEEEEcccEEEEEEccccccccccccccccccEEEEEEccHccHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEccHHHHHHHHcccccccccccccHHcc

mlaifnkglvnppqelhspaslsssrkpkhpeeIFNEFLisqssnafsinfgnaaalayvppenpnsvsqrwFCGLHNVYCMFMgslnnlsslnkqyglskgsnEAMFVIEAYRTlrdrgpypahqvlrdldgsfgfvlyDCKAGTIFAALDADEGVRLFWGIaadgsvviSDNLELIKASCaksfapfpagmssain

mlaifnkglvnppqelhspaslsssrkPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAksfapfpagmssain

MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN

*********************************IFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFA***********

MLAIFNKGLVNP**************************LISQSSNAFSINFGNAAAL****************CGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMS****

MLAIFNKGLVNPPQE**************HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN

ML**FNKGLVNPPQELHS********KPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSS***

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MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAIN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		198	2.2.26 [Sep-21-2011]
P24805		149	Stem-specific protein TSJ	N/A	no	0.742	0.986	0.397	4e-26
Q54MB4		557	Probable asparagine synth	yes	no	0.308	0.109	0.451	6e-06
Q10MX3		604	Asparagine synthetase [gl	no	no	0.308	0.100	0.419	0.0002
O24661		586	Asparagine synthetase [gl	N/A	no	0.308	0.104	0.435	0.0007

>sp\|P24805\|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1	Back alignment and function desciption

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLI-SQSSNAFSINFGNAAALAY 59
           MLA+F + +  PP EL  P +    ++ K  EEI   F    Q S  + +  GN  A ++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 60  VPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDR 119
               N N +  R    + +V+C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR
Sbjct: 61  ---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDR 117

Query: 120 GPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
            PYP  QV+++L+G F F+L+D KA T+F A
Sbjct: 118 APYPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)

>sp\|Q54MB4\|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1	Back alignment and function description

>sp\|Q10MX3\|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1	Back alignment and function description

>sp\|O24661\|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		198
255556005		255	Stem-specific protein TSJT1, putative [R	0.969	0.752	0.755	1e-82
118489868		255	unknown [Populus trichocarpa x Populus d	0.969	0.752	0.744	1e-78
224125458		255	predicted protein [Populus trichocarpa]	0.969	0.752	0.744	1e-78
224077142		255	predicted protein [Populus trichocarpa]	0.964	0.749	0.732	2e-77
151347488		252	unknown [Carica papaya]	0.969	0.761	0.718	2e-76
359497046		266	PREDICTED: stem-specific protein TSJT1-l	0.969	0.721	0.703	6e-76
359497096		256	PREDICTED: stem-specific protein TSJT1-l	0.969	0.75	0.703	1e-75
224114988		255	predicted protein [Populus trichocarpa]	0.974	0.756	0.694	2e-75
284521002		255	stem-specific protein tsjt1, putative [J	0.969	0.752	0.687	3e-73
255587366		226	Stem-specific protein TSJT1, putative [R	0.969	0.849	0.666	1e-72

>gi\|255556005\|ref\|XP_002519037.1\| Stem-specific protein TSJT1, putative [Ricinus communis] gi\|223541700\|gb\|EEF43248.1\| Stem-specific protein TSJT1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 175/192 (91%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLVNPPQEL+SPASL+SSRKP+ PE+I  +F  S  SNAFSI+FG++A+LAY+
Sbjct: 1   MLAIFNKGLVNPPQELNSPASLASSRKPQLPEQILKDFASSDLSNAFSISFGDSASLAYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           PP+NP  + QR FCGL++VYC+F+GSLNNL SLN+QYGLSKG+NEAMFVIEAY+TLRDRG
Sbjct: 61  PPKNPFPIHQRLFCGLNDVYCIFLGSLNNLCSLNRQYGLSKGTNEAMFVIEAYKTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 180
           PYPAHQVL++L+G+FGFV+YD K+G +FAAL A+EGV L+WGIAADGSVVISDNLE+IK 
Sbjct: 121 PYPAHQVLKELEGTFGFVVYDTKSGHVFAALGANEGVGLYWGIAADGSVVISDNLEVIKG 180

Query: 181 SCAKSFAPFPAG 192
           SCAKSFAPFP+G
Sbjct: 181 SCAKSFAPFPSG 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|118489868\|gb\|ABK96732.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|224125458\|ref\|XP_002329810.1\| predicted protein [Populus trichocarpa] gi\|222870872\|gb\|EEF08003.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224077142\|ref\|XP_002305151.1\| predicted protein [Populus trichocarpa] gi\|222848115\|gb\|EEE85662.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|151347488\|gb\|ABS01353.1\| unknown [Carica papaya]	Back alignment and taxonomy information

>gi\|359497046\|ref\|XP_003635407.1\| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi\|296088194\|emb\|CBI35710.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359497096\|ref\|XP_003635423.1\| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi\|296090652\|emb\|CBI41052.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224114988\|ref\|XP_002316911.1\| predicted protein [Populus trichocarpa] gi\|222859976\|gb\|EEE97523.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|284521002\|gb\|ADB93076.1\| stem-specific protein tsjt1, putative [Jatropha curcas]	Back alignment and taxonomy information

>gi\|255587366\|ref\|XP_002534247.1\| Stem-specific protein TSJT1, putative [Ricinus communis] gi\|223525648\|gb\|EEF28137.1\| Stem-specific protein TSJT1, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		198
TAIR\|locus:2123994		250	AT4G27450 "AT4G27450" [Arabido	0.969	0.768	0.656	1.3e-66
TAIR\|locus:2090116		253	AT3G15450 "AT3G15450" [Arabido	0.959	0.750	0.616	1.5e-60
TAIR\|locus:2170822		251	AT5G43830 "AT5G43830" [Arabido	0.954	0.752	0.463	6.6e-42
TAIR\|locus:2182137		234	AILP1 "AT5G19140" [Arabidopsis	0.954	0.807	0.432	4.3e-38
TAIR\|locus:2084598		248	AT3G22850 "AT3G22850" [Arabido	0.944	0.754	0.435	1.3e-36
DICTYBASE\|DDB_G0286059		557	asns "asparagine synthetase" [	0.308	0.109	0.451	7.7e-05

TAIR\|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 126/192 (65%), Positives = 154/192 (80%)

Query:     1 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
             MLAIF++   +PP+EL+SPAS   S++PK PEE  N+FL+    N FS++FG AA LAYV
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    61 PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
              P    S+ QR FCG  ++YC+F GSLNNL  LNKQYGL+K +NEAMFVIEAYRTLRDRG
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 180
             PYPA QV++DLDGSF FV+YD KAG++F AL +D GV+L+WGIAADGSVVISD+L++IK 
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIKE 180

Query:   181 SCAKSFAPFPAG 192
              CAKSFAPFP G
Sbjct:   181 GCAKSFAPFPTG 192

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR\|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_1240007	hypothetical protein (256 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		198
pfam12481		228	pfam12481, DUF3700, Aluminium induced protein	1e-114
cd01910		224	cd01910, Wali7, This domain is present in Wali7, a	2e-98
cd00352		220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	6e-19
PTZ00077		586	PTZ00077, PTZ00077, asparagine synthetase-like pro	9e-10
PLN02549		578	PLN02549, PLN02549, asparagine synthase (glutamine	1e-07
PRK09431		554	PRK09431, asnB, asparagine synthetase B; Provision	1e-06
pfam00310		223	pfam00310, GATase_2, Glutamine amidotransferases c	4e-06
COG0367		542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	0.002
pfam13537		120	pfam13537, GATase_7, Glutamine amidotransferase do	0.004

>gnl\|CDD\|221596 pfam12481, DUF3700, Aluminium induced protein	Back alignment and domain information

 Score =  325 bits (835), Expect = e-114
 Identities = 117/192 (60%), Positives = 146/192 (76%), Gaps = 3/192 (1%)

Query: 2   LAIFNKGLVNPPQELHSPAS-LSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           LA+F+K +  PP+EL+SPAS L SS K K PEE+  +F+ S + NA S+NFG++A LAY 
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFV-SANPNAVSVNFGDSAFLAYS 59

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
                + +  R F  + +++C+F G L NL+SL +QYGLSK +NEAM VIEAYRTLRDRG
Sbjct: 60  H-SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRG 118

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 180
           PYPA QV++DL+GSF FVLYD K GT+F ALDAD  V LFWGIAADGS+V SD+LEL+KA
Sbjct: 119 PYPADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKA 178

Query: 181 SCAKSFAPFPAG 192
            C KSFAPFP G
Sbjct: 179 GCGKSFAPFPQG 190

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl\|CDD\|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

>gnl\|CDD\|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>gnl\|CDD\|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>gnl\|CDD\|236513 PRK09431, asnB, asparagine synthetase B; Provisional	Back alignment and domain information

>gnl\|CDD\|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II	Back alignment and domain information

>gnl\|CDD\|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|222208 pfam13537, GATase_7, Glutamine amidotransferase domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		198
cd01910		224	Wali7 This domain is present in Wali7, a protein o	100.0
PF12481		228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	100.0
PRK09431		554	asnB asparagine synthetase B; Provisional	100.0
PTZ00077		586	asparagine synthetase-like protein; Provisional	100.0
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	100.0
cd00712		220	AsnB Glutamine amidotransferases class-II (GATase)	100.0
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	100.0
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	100.0
cd03766		181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	100.0
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	100.0
PRK08525		445	amidophosphoribosyltransferase; Provisional	100.0
cd00714		215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	100.0
PRK07631		475	amidophosphoribosyltransferase; Provisional	100.0
PRK06388		474	amidophosphoribosyltransferase; Provisional	100.0
PRK07272		484	amidophosphoribosyltransferase; Provisional	100.0
PRK07349		500	amidophosphoribosyltransferase; Provisional	99.98
PRK06781		471	amidophosphoribosyltransferase; Provisional	99.98
KOG0571		543	consensus Asparagine synthase (glutamine-hydrolyzi	99.98
PRK08341		442	amidophosphoribosyltransferase; Provisional	99.98
PLN02440		479	amidophosphoribosyltransferase	99.98
PRK09123		479	amidophosphoribosyltransferase; Provisional	99.98
PRK09246		501	amidophosphoribosyltransferase; Provisional	99.97
cd01907		249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.97
cd00715		252	GPATase_N Glutamine amidotransferases class-II (GN	99.97
PRK07847		510	amidophosphoribosyltransferase; Provisional	99.97
PRK05793		469	amidophosphoribosyltransferase; Provisional	99.97
PRK00331		604	glucosamine--fructose-6-phosphate aminotransferase	99.97
TIGR01134		442	purF amidophosphoribosyltransferase. Alternate nam	99.97
cd00352		220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.97
TIGR01135		607	glmS glucosamine--fructose-6-phosphate aminotransf	99.97
PF13537		125	GATase_7: Glutamine amidotransferase domain; PDB:	99.97
cd01909		199	betaLS_CarA_N Glutamine amidotransferases class-II	99.96
PTZ00295		640	glucosamine-fructose-6-phosphate aminotransferase;	99.96
COG0034		470	PurF Glutamine phosphoribosylpyrophosphate amidotr	99.95
PF13522		133	GATase_6: Glutamine amidotransferase domain	99.95
PLN02981		680	glucosamine:fructose-6-phosphate aminotransferase	99.93
KOG0572		474	consensus Glutamine phosphoribosylpyrophosphate am	99.92
PTZ00394		670	glucosamine-fructose-6-phosphate aminotransferase;	99.92
COG0449		597	GlmS Glucosamine 6-phosphate synthetase, contains	99.88
cd00713		413	GltS Glutamine amidotransferases class-II (Gn-AT),	99.8
cd01908		257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	99.77
TIGR03442		251	conserved hypothetical protein TIGR03442. Members	99.73
PF00310		361	GATase_2: Glutamine amidotransferases class-II; In	99.65
KOG0573		520	consensus Asparagine synthase [Amino acid transpor	99.6
KOG1268		670	consensus Glucosamine 6-phosphate synthetases, con	99.4
PRK11750		1485	gltB glutamate synthase subunit alpha; Provisional	99.39
PF13230		271	GATase_4: Glutamine amidotransferases class-II; PD	98.8
PF09147		201	DUF1933: Domain of unknown function (DUF1933); Int	98.4
COG0067		371	GltB Glutamate synthase domain 1 [Amino acid trans	98.31
COG0121		252	Predicted glutamine amidotransferase [General func	97.62
KOG0399		2142	consensus Glutamate synthase [Amino acid transport	95.96
PF04566		63	RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; Int	88.45

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum	Back alignment and domain information

Probab=100.00  E-value=1.6e-50  Score=329.12  Aligned_cols=191  Identities=55%  Similarity=0.918  Sum_probs=173.1

Q ss_pred             eeeecCCCCCCCcCccCCCCCCCCCCCCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCCCCCCCCcceEecCCcEEE
Q 029123            2 LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYC   81 (198)
Q Consensus         2 l~vf~~~va~~p~~l~~~~~~~~~~~~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~~~~~~~qP~~~~~~~~~~   81 (198)
                      ||||+|+||+|||||+||.+..+   ++...++++.|....|+ +..+++++...|++++..++ ...|++++.+++++|
T Consensus         1 laif~~~~~~~p~el~~~~~~~~---~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~   75 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP---AKTAEELLKRFLSANPS-AVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC   75 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc---CCCHHHHHHHHHhcCCC-cEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence            89999999999999999886422   55668999999999995 77777988899999866654 568889988899999


Q ss_pred             EEEEEEechHhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEE
Q 029123           82 MFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFW  161 (198)
Q Consensus        82 v~nG~i~N~~~L~~~l~~~~~~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~  161 (198)
                      ++||+|||+.+|+++|+..++.+|+++|+++|++++++|++++++++++|+|+|||+|||+.++++++|||++|++||||
T Consensus        76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYy  155 (224)
T cd01910          76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYW  155 (224)
T ss_pred             EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEE
Confidence            99999999999999998778889999999999977778988888999999999999999999999999999999999999


Q ss_pred             EEECCceEEEEechhhHHhhcCcceEEeCCCcEEEe
Q 029123          162 GIAADGSVVISDNLELIKASCAKSFAPFPAGMSSAI  197 (198)
Q Consensus       162 g~~~~g~~~faSe~~~L~~~~~~~~~~~ppG~~~~~  197 (198)
                      +.+.+|.++||||+++|...|++++++|||||+|..
T Consensus       156 g~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s  191 (224)
T cd01910         156 GIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS  191 (224)
T ss_pred             EEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC
Confidence            987679999999999999999888999999999863

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>cd03766 Gn_AT_II_novel Gn_AT_II_novel	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>PRK08525 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type	Back alignment and domain information

>PRK07631 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK06388 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07272 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK07349 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK06781 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>PRK08341 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PLN02440 amidophosphoribosyltransferase	Back alignment and domain information

>PRK09123 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK09246 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	Back alignment and domain information

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type	Back alignment and domain information

>PRK07847 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK05793 amidophosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed	Back alignment and domain information

>TIGR01134 purF amidophosphoribosyltransferase	Back alignment and domain information

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)	Back alignment and domain information

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)	Back alignment and domain information

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A	Back alignment and domain information

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type	Back alignment and domain information

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF13522 GATase_6: Glutamine amidotransferase domain	Back alignment and domain information

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase	Back alignment and domain information

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	Back alignment and domain information

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional	Back alignment and domain information

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type	Back alignment and domain information

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	Back alignment and domain information

>TIGR03442 conserved hypothetical protein TIGR03442	Back alignment and domain information

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group	Back alignment and domain information

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PRK11750 gltB glutamate synthase subunit alpha; Provisional	Back alignment and domain information

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D	Back alignment and domain information

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices	Back alignment and domain information

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]	Back alignment and domain information

>COG0121 Predicted glutamine amidotransferase [General function prediction only]	Back alignment and domain information

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		198
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 17/167 (10%), Positives = 47/167 (28%), Gaps = 57/167 (34%)

Query: 1   MLAIFNKGLVN-PPQELHSPASLSSSRKPKHPEEIFNEF----LISQSSNAFSINFGNAA 55
            L++F     + P   L   + +           + N+     L+ +     +I      
Sbjct: 377 RLSVFPPS-AHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------ 426

Query: 56  ALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRT 115
                               + ++Y      L N  +L++             +++ Y  
Sbjct: 427 -------------------SIPSIYLELKVKLENEYALHRS------------IVDHYNI 455

Query: 116 LRDRGPYPAHQVLRD-LDG-SFGFVLYDCKAGTIFAALDADEGVRLF 160
            +    + +  ++   LD   +  + +          ++  E + LF
Sbjct: 456 PKT---FDSDDLIPPYLDQYFYSHIGHH------LKNIEHPERMTLF 493

PyMOL of 1vt4

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		198
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	100.0
1xff_A		240	D-fructose-6-, glucosamine--fructose-6-phosphate a	100.0
1ao0_A		459	Glutamine phosphoribosylpyrophosphate amidotransfe	100.0
1ecf_A		504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.97
2bpl_A		608	Glucosamine--fructose-6-phosphate aminotransferase	99.97
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	99.95
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.95
3mdn_A		274	Glutamine aminotransferase class-II domain protei;	99.92
1te5_A		257	Conserved hypothetical protein; glutamine amidotra	99.81
1ea0_A		1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.76
1ofd_A		1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.73

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

Probab=100.00  E-value=4.8e-36  Score=273.98  Aligned_cols=159  Identities=20%  Similarity=0.325  Sum_probs=143.3

Q ss_pred             CHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC---CCCCC
Q 029123           30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKGSN  104 (198)
Q Consensus        30 ~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~---~~~~~  104 (198)
                      ...+|++.|+|||||+++++ ..++++|||+||+  +...+.||+...+++++++|||+|||+.+||++|..   +.+.+
T Consensus        19 ~~~~m~~~l~hRGpD~~G~~-~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~s   97 (553)
T 1ct9_A           19 KALELSRLMRHRGPDWSGIY-ASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGS   97 (553)
T ss_dssp             HHHHHHHTTGGGCBTEEEEE-ECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCC
T ss_pred             HHHHHHHHHhccCCCcccEE-EECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCC
Confidence            45689999999999999999 5567999999999  434689999887788999999999999999999863   78999


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhcCc
Q 029123          105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAK  184 (198)
Q Consensus       105 D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~~~  184 (198)
                      |+|+|+++|+   +||.    +++++|+|+|||++||..+++++++||++|++||||+...++.++||||.++|...+ +
T Consensus        98 DtEvil~l~~---~~g~----~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~-~  169 (553)
T 1ct9_A           98 DCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-R  169 (553)
T ss_dssp             TTHHHHHHHH---HHTT----TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC-S
T ss_pred             cHHHHHHHHH---HHHH----HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhc-C
Confidence            9999999999   7896    899999999999999998899999999999999999985457899999999998777 5


Q ss_pred             ceEEeCCCcEEEe
Q 029123          185 SFAPFPAGMSSAI  197 (198)
Q Consensus       185 ~~~~~ppG~~~~~  197 (198)
                      .+.++|||+++.+
T Consensus       170 ~i~~l~pG~~~~~  182 (553)
T 1ct9_A          170 TIKEFPAGSYLWS  182 (553)
T ss_dssp             EEEECCTTEEEET
T ss_pred             CEEEECCCeEEEE
Confidence            6999999999875

PyMOL of 1ct9

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*	Back alignment and structure

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*	Back alignment and structure

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*	Back alignment and structure

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}	Back alignment and structure

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1	Back alignment and structure

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*	Back alignment and structure

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		198
d1ct9a2		192	Asparagine synthetase B, N-terminal domain {Escher	100.0
d1jgta2		206	beta-Lactam synthetase {Streptomyces clavuligerus	100.0
d1gph12		234	Glutamine PRPP amidotransferase, N-terminal domain	99.98
d1ecfa2		249	Glutamine PRPP amidotransferase, N-terminal domain	99.97
d1q15a2		204	beta-Lactam synthetase {Pectobacterium carotovorum	99.96
d1xffa_		238	Glucosamine 6-phosphate synthase, N-terminal domai	99.96
d1te5a_		253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	99.37
d1ofda3		430	Alpha subunit of glutamate synthase, N-terminal do	99.21
d1ea0a3		422	Alpha subunit of glutamate synthase, N-terminal do	99.21

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-42  Score=272.21  Aligned_cols=161  Identities=20%  Similarity=0.325  Sum_probs=144.7

Q ss_pred             CCCHHHHHHHhHhcCCCCcceEEeCCcEEEEeecCC--CCCCCCcceEecCCcEEEEEEEEEechHhHHHHhcC---CCC
Q 029123           28 PKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPE--NPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKG  102 (198)
Q Consensus        28 ~~~~~~~~~~l~~rgpd~~~~~~~~~~~~lg~~r~~--~~~~~~qP~~~~~~~~~~v~nG~i~N~~~L~~~l~~---~~~  102 (198)
                      .+...+|++.|+|||||+.+++ ..+++.|||+||+  +...+.||+...+++++++|||+|||+.+|++++..   +.+
T Consensus        17 ~~~~~~m~~~l~hRGpD~~~~~-~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s   95 (192)
T d1ct9a2          17 RKKALELSRLMRHRGPDWSGIY-ASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQT   95 (192)
T ss_dssp             HHHHHHHHHTTGGGCBTEEEEE-ECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCS
T ss_pred             HHHHHHHHHHhcccCCCCCCeE-EeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCC
Confidence            3567889999999999999998 6678999999999  333567777778889999999999999999999864   677


Q ss_pred             CCHHHHHHHHHHHHHhcCCchHHHhhcccccceEEEEEECCCCEEEEEEcCCCCceEEEEEECCceEEEEechhhHHhhc
Q 029123          103 SNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC  182 (198)
Q Consensus       103 ~~D~e~i~~~y~~~~~~g~~~~~~~l~~L~G~Fafvi~D~~~~~l~~arD~~G~~PL~~g~~~~g~~~faSe~~~L~~~~  182 (198)
                      .+|+|+++++|+   ++|.    ++++.|+|+|||++||..++++++|||++|+|||||+..++|.++||||+++|...|
T Consensus        96 ~sDtevll~~~~---~~g~----~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~~  168 (192)
T d1ct9a2          96 GSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC  168 (192)
T ss_dssp             CCTTHHHHHHHH---HHTT----TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC
T ss_pred             CCcHHHHHHHhh---hcch----hhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHhh
Confidence            899999999999   8997    899999999999999999999999999999999999997667899999999999988


Q ss_pred             CcceEEeCCCcEEEe
Q 029123          183 AKSFAPFPAGMSSAI  197 (198)
Q Consensus       183 ~~~~~~~ppG~~~~~  197 (198)
                       +.+.+|||||++.+
T Consensus       169 -~~i~~~~pG~~l~~  182 (192)
T d1ct9a2         169 -RTIKEFPAGSYLWS  182 (192)
T ss_dssp             -SEEEECCTTEEEET
T ss_pred             -CCeEEcCCccEEEE
Confidence             45999999999875

PyMOL of d1ct9a2

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}	Back information, alignment and structure

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}	Back information, alignment and structure