Citrus Sinensis ID: 029129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Secondary Structure (PSIPRED)
ccEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccHHHHccccEEEEEEcccEEEEEEccccccccEEEEEEccccccHHHHHHHHccccccccccHHHHHHHHHHHcccccccEEEEEEEEEEEEEEEEccEEEEEEcEEEccccEEEEEEEEccHHHHHHHHHHHHHHcccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHEEEEcccccEEEEEccccEEEccccccccccccccHHHHHHHHHcHHHHccccHHHHHHHHHHHcccccccEEEEccccccHEEEEcccEEEEEEccccccccEEEEEEccccHHHHHHHHHHHHHHccccEEEccccHEHEEEccccc
Coil and Loop (DISEMBL)
MEVELKLCLKSAASHKQLISLLSQFHTKTlrqhnlffdtstsflSSQRTVLRLRRDTRCVlclkskpslvngvsrveedeeeldpVVAKEcienpsklFEIESRVVRRVREefgvgsevglVCLGGFENLRQVYEWNSLILevdetkydfgnnyevecessdpeGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Flexible Loop (DISEMBL)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNlffdtstsflssqrtvlrlrrdtrcvlclkskpslvngvsrveedeeeldpvvakecienpsklfeiesrvvRRVREefgvgsevglvcLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVecessdpeGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Low Complexity Region (SEG)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNlffdtstsflssQRTVLRLRRDTRCVLCLKSKPSLVNGVSRVeedeeeLDPVVAKECIENPSKLfeiesrvvrrvreefgvgsevGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Disordered region (IsUnstruct)
*****KLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNG************PVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECES***EGVKKLLEGFLNENGIEFEYSQMTKFAVFR*****
Disordered Region (DISOPRED)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSL*NGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKL*
Disordered Region (DISEMBL)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNG************PVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Disordered Region (DISPRO)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224144089	204	predicted protein [Populus trichocarpa]	1.0	0.970	0.598	5e-66
255583112	201	adenylate cyclase, putative [Ricinus com	1.0	0.985	0.611	3e-64
356548543	199	PREDICTED: uncharacterized protein LOC10	0.989	0.984	0.606	5e-63
357478385	201	hypothetical protein MTR_4g116130 [Medic	1.0	0.985	0.597	1e-62
388522067	201	unknown [Medicago truncatula]	1.0	0.985	0.597	2e-62
356562926	199	PREDICTED: uncharacterized protein LOC10	0.989	0.984	0.601	2e-61
147796316	200	hypothetical protein VITISV_036603 [Viti	0.989	0.98	0.58	2e-60
388513853	201	unknown [Medicago truncatula]	1.0	0.985	0.587	3e-60
224120472	205	predicted protein [Populus trichocarpa]	1.0	0.965	0.595	6e-60
225446199	201	PREDICTED: uncharacterized protein LOC10	0.994	0.980	0.582	8e-59

>gi|224144089|ref|XP_002325182.1| predicted protein [Populus trichocarpa] gi|118482688|gb|ABK93263.1| unknown [Populus trichocarpa] gi|222866616|gb|EEF03747.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/204 (59%), Positives = 157/204 (76%), Gaps = 6/204 (2%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR------ 54
           MEVE+KL L  A +H +L  +LS FH K L Q N+FFD++   L+SQR VLRLR      
Sbjct: 1   MEVEVKLRLLDAVNHSRLKEILSPFHIKKLNQKNVFFDSANGILASQRAVLRLRSFSNNN 60

Query: 55  RDTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFG 114
             TRCVL LK+KP L+NGVSRVEEDEEE+DP+  ++C+E  SKL   ESR+++R ++EFG
Sbjct: 61  EKTRCVLSLKAKPMLINGVSRVEEDEEEIDPLTGEQCVEEASKLGLTESRIIKRCKDEFG 120

Query: 115 VGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFL 174
           +  E+G VCLGGFEN+R VYEW  L LEVDE+K+ FG  YE+ECE+ DPE VK++LEGFL
Sbjct: 121 IDGEMGFVCLGGFENVRDVYEWRGLKLEVDESKFSFGVCYEIECENDDPERVKRVLEGFL 180

Query: 175 NENGIEFEYSQMTKFAVFRAGKLP 198
            ENGI+++YS+M+KFA+FRAGKLP
Sbjct: 181 KENGIDYKYSEMSKFAIFRAGKLP 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583112|ref|XP_002532323.1| adenylate cyclase, putative [Ricinus communis] gi|223527992|gb|EEF30075.1| adenylate cyclase, putative [Ricinus communis]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 159/201 (79%), Gaps = 3/201 (1%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL ++ AA+H +L +LLS  H KT  Q NLFFD+ +S LSSQ  VLR+R    D+
Sbjct: 1   MEVEVKLRIQDAANHTRLKTLLSPSHIKTHNQQNLFFDSISSSLSSQLAVLRMRFFNNDS 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
            CVL LK+KP LVNGVSRV+EDEEE++P + +EC+ +PSKL  IESR++ R +EEFGVGS
Sbjct: 61  LCVLSLKAKPLLVNGVSRVQEDEEEINPTIGRECVADPSKLISIESRIISRCKEEFGVGS 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E+G VCLGGFEN+R VYEW    LEVDETKY FG ++E+ECE++DPE  K+ +E FL  N
Sbjct: 121 EMGFVCLGGFENVRDVYEWKGFKLEVDETKYSFGVSFEIECETADPEDAKREIEEFLKGN 180

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
           GI+++YS+M+KFAVFR+GKLP
Sbjct: 181 GIDYKYSEMSKFAVFRSGKLP 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548543|ref|XP_003542660.1| PREDICTED: uncharacterized protein LOC100778542 isoform 1 [Glycine max] gi|356548545|ref|XP_003542661.1| PREDICTED: uncharacterized protein LOC100778542 isoform 2 [Glycine max]

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 151/201 (75%), Gaps = 5/201 (2%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KLCL  + +H+ + +LLS FH  T RQ NLFFD + S LS++R VLRLR    D 
Sbjct: 1   MEVEVKLCLADSNAHRHVTTLLSPFHVVTHRQQNLFFDGAASELSARRAVLRLRFYGDDE 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCV  LK++  LV+GVSRVEEDEE+LDP + + C+  P+KL  +ESRV+ RV+EEFG  +
Sbjct: 61  RCVASLKARAVLVDGVSRVEEDEEDLDPRIGRACVAEPAKLGSVESRVLGRVKEEFG--T 118

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E GLV LGGF NLR VY+W  L LEVDETK+DFG  YE+ECESSDPEG K+LLE FL EN
Sbjct: 119 EKGLVGLGGFGNLRSVYDWKGLKLEVDETKFDFGTLYEIECESSDPEGAKRLLEEFLKEN 178

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
            I + YS  +KFA+FR+GKLP
Sbjct: 179 EINYSYSTASKFAIFRSGKLP 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478385|ref|XP_003609478.1| hypothetical protein MTR_4g116130 [Medicago truncatula] gi|355510533|gb|AES91675.1| hypothetical protein MTR_4g116130 [Medicago truncatula]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 154/201 (76%), Gaps = 3/201 (1%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL L +A S+ ++ +LLS FH  T RQHNLFFD + S LSS+R +LRLR    D 
Sbjct: 1   MEVEVKLRLPNADSYHRVTTLLSPFHVITHRQHNLFFDGAGSELSSRRAILRLRFYGDDE 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCV+ LK+K  LV+GVSRVEEDEE+LDP + ++C++ P KL  +ESR++ RV+EEFGV  
Sbjct: 61  RCVVSLKAKAVLVDGVSRVEEDEEDLDPKIGRDCVDEPGKLGLVESRIMGRVKEEFGVVG 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E G V LGGF+N+R VY+W  L LEVDET +DFG  +E+ECESSDPE  K++LE FL EN
Sbjct: 121 ENGFVGLGGFKNVRNVYDWKGLKLEVDETHFDFGTLFEIECESSDPEEAKRILEEFLKEN 180

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
           GI++ YS  +KFA+FRAGKLP
Sbjct: 181 GIDYSYSVASKFAIFRAGKLP 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522067|gb|AFK49095.1| unknown [Medicago truncatula]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 153/201 (76%), Gaps = 3/201 (1%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL L +A S+ ++ +LLS FH  T RQHNLFFD + S LSS+R +LRLR    D 
Sbjct: 1   MEVEVKLRLPNADSYHRVTTLLSPFHVITHRQHNLFFDGAGSELSSRRAILRLRFYGDDE 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCV+ LK+K  LV+GVSRVEEDEE+LDP + ++C++ P KL  +ESR++ RV+EEFGV  
Sbjct: 61  RCVVSLKAKAVLVDGVSRVEEDEEDLDPKIGRDCVDEPGKLGLVESRIMGRVKEEFGVVG 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E G V LGGF N+R VY+W  L LEVDET +DFG  +E+ECESSDPE  K++LE FL EN
Sbjct: 121 ENGFVGLGGFRNVRNVYDWKGLKLEVDETHFDFGTLFEIECESSDPEEAKRILEEFLKEN 180

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
           GI++ YS  +KFA+FRAGKLP
Sbjct: 181 GIDYSYSVASKFAIFRAGKLP 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562926|ref|XP_003549719.1| PREDICTED: uncharacterized protein LOC100789981 [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 150/201 (74%), Gaps = 5/201 (2%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL L  A +H+ + +LLS FH  T RQ NLFFD + S LS++R VLRLR    D 
Sbjct: 1   MEVEVKLRLADANAHRHVTTLLSPFHVITHRQQNLFFDGAASELSARRAVLRLRFYGDDE 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCV  LK++  LV+GVSRVEEDEE+LDP + +EC+  P+KL  +ESRV++RV+EEFG  +
Sbjct: 61  RCVASLKARAVLVDGVSRVEEDEEDLDPSIGRECVAEPAKLGSVESRVLKRVQEEFG--T 118

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E GLV LGGF NLR VY+W  L LEVDET +DFG  YE+ECESSDPE  K+LLE FL EN
Sbjct: 119 EKGLVGLGGFGNLRSVYDWKGLKLEVDETSFDFGTLYEIECESSDPERAKRLLEEFLKEN 178

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
            I + YS  +KFA+FR+GKLP
Sbjct: 179 EINYSYSTASKFAIFRSGKLP 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147796316|emb|CAN72544.1| hypothetical protein VITISV_036603 [Vitis vinifera]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 4/200 (2%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL L  AASH++L  LL+ FH KTL Q N+FFD + + LSS+  VLRLR    D+
Sbjct: 1   MEVEVKLRLPDAASHQKLSDLLAPFHVKTLIQENIFFDGAAAELSSKFAVLRLRFYDLDS 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCVL LKS+P + NG+SR +E EEE++P++ + C+  P +   + SR+++R+R+EF VG 
Sbjct: 61  RCVLSLKSQPQISNGISRAKEVEEEIEPLIGRACVAEPWRFKSMSSRIIKRLRDEFEVGD 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E GLVCLGGF N+R VY WN L LE+DET +DFG NYE+ECESS+PE  KKLLEGFL EN
Sbjct: 121 E-GLVCLGGFRNVRAVYAWNGLNLELDETLFDFGTNYEIECESSEPERAKKLLEGFLEEN 179

Query: 178 GIEFEYSQMTKFAVFRAGKL 197
           GI F  ++ +KFAVFR+GKL
Sbjct: 180 GISFSNAEASKFAVFRSGKL 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513853|gb|AFK44988.1| unknown [Medicago truncatula]

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/201 (58%), Positives = 152/201 (75%), Gaps = 3/201 (1%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+KL L +A S+ ++ +LLS FH  T RQHNLFFD + S LSS+R +LRLR    D 
Sbjct: 1   MEVEVKLRLPNADSYHRVTTLLSPFHVITHRQHNLFFDGAGSELSSRRAILRLRFYGDDE 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           +CV+ LK+K  LV+GVSRVEEDEE+LDP + ++C++ P KL  +ESR++ RV+EEFGV  
Sbjct: 61  QCVVSLKAKAVLVDGVSRVEEDEEDLDPKIGRDCVDEPGKLGLVESRIMGRVKEEFGVVG 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
           E G V LGGF+N+  VY+W  L LEVDET +DFG  +E+ECESSDPE  K++LE FL EN
Sbjct: 121 ENGFVGLGGFKNVGNVYDWKGLKLEVDETHFDFGTLFEIECESSDPEEAKRILEEFLKEN 180

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
           GI+  YS  +KFA+FRAGKLP
Sbjct: 181 GIDCSYSVASKFAIFRAGKLP 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120472|ref|XP_002331056.1| predicted protein [Populus trichocarpa] gi|222872986|gb|EEF10117.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 156/205 (76%), Gaps = 7/205 (3%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR------ 54
           MEVE+KL L  AA+H  L  +LS FH K L Q N+F+D++   L+SQR VLRLR      
Sbjct: 1   MEVEVKLRLLDAANHSLLKEILSPFHLKKLNQKNVFYDSANGVLASQRAVLRLRSFNDNN 60

Query: 55  -RDTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEF 113
              TRCV  LK+K  L+NGVSRVEEDEEE++P++ K+C+E  SKL  IESRV++R ++EF
Sbjct: 61  DESTRCVFSLKAKAVLINGVSRVEEDEEEIEPLIGKQCVEEASKLGSIESRVIKRCKDEF 120

Query: 114 GVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGF 173
           G+  EVG VCLGGFEN+R+VY+W  L LEVDE+ + FG  YEVECES DPE VK+ LEGF
Sbjct: 121 GIDGEVGFVCLGGFENVREVYDWRGLKLEVDESTFSFGVCYEVECESDDPERVKRELEGF 180

Query: 174 LNENGIEFEYSQMTKFAVFRAGKLP 198
           L ENGI+++YS+++KFA+FRAGKLP
Sbjct: 181 LKENGIDYKYSEVSKFAIFRAGKLP 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446199|ref|XP_002263004.1| PREDICTED: uncharacterized protein LOC100260911 isoform 1 [Vitis vinifera]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 158/201 (78%), Gaps = 4/201 (1%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDT 57
           MEVE+K+ L  +++H+ + +LLS FH +T RQ NLFFD +   LSS+R VLRLR    D 
Sbjct: 1   MEVEVKIRLPDSSTHRAVSALLSSFHRETQRQQNLFFDGAAGELSSRRAVLRLRFYGDDA 60

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
           RCV+ LK+K  LVNGVSRVEEDEEE++P + ++C+ +PSKL E++SR++RRVR+EFGVG+
Sbjct: 61  RCVVSLKAKAILVNGVSRVEEDEEEMEPSIGRDCVADPSKLSEVDSRILRRVRDEFGVGT 120

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNEN 177
             G VCLGGF+N+R V+EW  L LE+DET YDFG  +E+ECESS+PE  K+++EGFL EN
Sbjct: 121 G-GFVCLGGFKNVRDVFEWKGLKLELDETMYDFGTCFEIECESSNPEEAKQVIEGFLKEN 179

Query: 178 GIEFEYSQMTKFAVFRAGKLP 198
           GI +  S+ +KFA+FR+GKLP
Sbjct: 180 GISYSDSEASKFAIFRSGKLP 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2045879	210	AT2G11890 [Arabidopsis thalian	1.0	0.942	0.471	1.5e-44

TAIR|locus:2045879 AT2G11890 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 99/210 (47%), Positives = 126/210 (60%)

Query:     1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNXXXXXXXXXXXXQRTVLRLR------ 54
             MEVE+KL L +AA+H +L +LL+ +H KTL Q N            +R VLRLR      
Sbjct:     1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60

Query:    55 ------RDTRCVLCLKSKPSLVNGVSRVXXXXXXLDPVVAKECIENPSKLXXXXXXXXXX 108
                      RC++ LK+KP+L NG+SRV      ++  + KEC+E+P+KL          
Sbjct:    61 VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120

Query:   109 XXXXXXXXXXXGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKK 168
                        G VCLGGFEN+R VYEW  + LEVDETKYDFGN YE+ECE+ +PE VK 
Sbjct:   121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180

Query:   169 LLEGFLNENGIEFEYSQMTKFAVFRAGKLP 198
             ++E FL E  IEF  S MTKFAVFR+GKLP
Sbjct:   181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       159   0.00091  106 3  11 22  0.37    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.49u 0.11s 11.60t   Elapsed:  00:00:00
  Total cpu time:  11.49u 0.11s 11.60t   Elapsed:  00:00:00
  Start:  Fri May 10 06:56:23 2013   End:  Fri May 10 06:56:23 2013

GO:0006796 "phosphate-containing compound metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1.28	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII1029 SubName- Full=Putative uncharacterized protein; (204 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd07374	174	cd07374, CYTH-like_Pase, CYTH-like (also known as	8e-19
pfam01928	175	pfam01928, CYTH, CYTH domain	2e-11
cd07762	180	cd07762, CYTH-like_Pase_1, Uncharacterized subgrou	4e-10
cd07890	169	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (A	1e-07
COG4116	193	COG4116, COG4116, Uncharacterized protein conserve	7e-07
cd07756	197	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subg	7e-06
COG3025	432	COG3025, COG3025, Uncharacterized conserved protei	8e-06

>gnl|CDD|143620 cd07374, CYTH-like_Pase, CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases

 Score = 79.0 bits (195), Expect = 8e-19
 Identities = 42/184 (22%), Positives = 58/184 (31%), Gaps = 34/184 (18%)

Query: 2   EVELKLCLKSAASHKQLISLLSQ---FHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDT- 57
           EVE K  +   A    L+ +         +T++   ++FDT    L   R  LRLRR T 
Sbjct: 1   EVERKFRVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPD--LRLARAGLRLRRRTG 58

Query: 58  --RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGV 115
                  LK       G+SR  E    L    A   +                V      
Sbjct: 59  GADAGWHLKLPG----GISRRTEVRAPLGDAAAVAPLLLA----------AALVLAVTRG 104

Query: 116 GSEVGLVCLGGFENLRQVYEWNS---LILEVDETKYDF------GNNYEVECESSDPEGV 166
                L  +   E  R VY       ++ E+D            G  Y  E E   P+G 
Sbjct: 105 L---PLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQYWREVEVELPDGD 161

Query: 167 KKLL 170
           + LL
Sbjct: 162 EALL 165

CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Length = 174

>gnl|CDD|216793 pfam01928, CYTH, CYTH domain

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 2   EVELKLCLKSAASHKQLISLLSQF-HTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCV 60
           E+E K  +        L     +    K   Q +++FDT    L+     LR+R      
Sbjct: 1   EIERKFLVPDEEYRDLLKLEKLRGKAEKPEEQRDIYFDTPDRDLAKTDEALRIRIFGNGA 60

Query: 61  LCLKSK-PSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
             L  K P +       EE E EL     ++ +E    L                     
Sbjct: 61  YFLTLKGPKVDGPFKSREEVEGELSDA--EDALELLDGL--------------------- 97

Query: 120 GLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLE 171
           GL  +G  + LR+ Y+   + + +DE ++  G   E+E E  D E + +  E
Sbjct: 98  GLKPVGSIKKLRRRYKVKGVGVALDEVEFLGGAFVELELEVEDEEELLEAAE 149

These sequences are functionally identified as members of the adenylate cyclase family, which catalyzes the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of three classes of adenylyl cyclases have been solved. Length = 175

>gnl|CDD|143627 cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 2   EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRCV 60
           E+E K  L +   ++QL +          +Q N +FDT    L  + + LR+R  + +  
Sbjct: 2   EIEFKNLL-TKEEYEQLKNAF--DLKDFFKQTNYYFDTPDFALKKKHSALRIREKEGKAE 58

Query: 61  LCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVG 120
           L LK    +        E  + L    A++ I+    L E E      + ++     E+G
Sbjct: 59  LTLKVPQEVGL-----LETNQPLTLEEAEKLIKG-GTLPEGE------ILDKL---KELG 103

Query: 121 -----LVCLGGFENLRQVYEWNSLILEVDETKYDFGN-NYEVECESSDPEGVKKLLEGFL 174
                L   G    +R    +   +L +D + Y  G  +YE+E E  D E  KK     L
Sbjct: 104 IDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLY-LGITDYELEYEVDDYEAGKKAFLELL 162

Query: 175 NENGIEFEYSQ 185
            +  I +  ++
Sbjct: 163 KQYNIPYRPAK 173

Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized. Length = 180

>gnl|CDD|143628 cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 29/190 (15%)

Query: 2   EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDT---R 58
           EVE+K  +    + ++ ++ L         Q +++FD     L++    LRLRR     +
Sbjct: 1   EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGK 60

Query: 59  CVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSE 118
            +L  K     ++G  +V E E E +       + +P  + EI  R              
Sbjct: 61  TLLTYKGPK--LDGGPKVRE-EIETE-------VADPEAMKEILER-------------- 96

Query: 119 VGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENG 178
           +G   +G  +  R++Y      + +D  +   G+  E+E    D E  ++ L       G
Sbjct: 97  LGFGPVGRVKKEREIYLLGQTRVHLDRVE-GLGDFVEIEVVLEDIEEAEEGLGEAAELLG 155

Query: 179 IEFEYSQMTK 188
           +  EY + T 
Sbjct: 156 LL-EYDEETL 164

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cellular processes. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel. Length = 169

>gnl|CDD|226601 COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 13/185 (7%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRC 59
           +E+E K  L +   + +LIS         + Q N + DT    L  +++ LR+R  + + 
Sbjct: 5   LEIEFKTLL-TKEEYNRLISQF-TIVEPDVLQTNHYIDTDDFKLKEKKSALRIRTKENQY 62

Query: 60  VLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
            L LK    +        E  + L    AK  + +      +    V  + E+ G+    
Sbjct: 63  ELTLKVPAKVGL-----LEYNQILSLEEAKLALISA----NLPEGEVLDILEKLGIKDS- 112

Query: 120 GLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGI 179
            L   G    +R   ++   +L +D+++Y    +YE+E E SD E  K+  +  L E  I
Sbjct: 113 ALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEFEVSDYEQGKQDFQKLLKEFSI 172

Query: 180 EFEYS 184
           E   +
Sbjct: 173 EQHPA 177

Length = 193

>gnl|CDD|143624 cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 2   EVELKLCL----KSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-D 56
           E+ELKL L      A +   L++ L+    +T R HN +FDT    L      LR+RR  
Sbjct: 1   EIELKLLLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVRREG 60

Query: 57  TRCVLCLKSKPSLVNGVSRVEE-----DEEELDPVVAK--------ECIENPSKLFEI-E 102
            + V  LK+  S+V G+ +  E          D  +A         E +   + L  +  
Sbjct: 61  GQWVQTLKTAGSVVGGLHQRPEWEVPLPGPAPDLDLASILPDGELLEALAALAALVPLFT 120

Query: 103 SRVVRRVREEFGVGSEV 119
           +   R V      GSE+
Sbjct: 121 TDFERTVWLLRLGGSEI 137

This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized. Length = 197

>gnl|CDD|225569 COG3025, COG3025, Uncharacterized conserved protein [Function unknown]

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 1  MEVELKLCLKSAASHKQLISLLSQFHTKTLRQH------NLFFDTSTSFLSSQRTVLRLR 54
           E+ELK       S +  ++LLS+    T+ +H      N+++DT  ++L      LR+R
Sbjct: 3  QEIELKF----LVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIR 58

Query: 55 RDT-RCVLCLKSKPSLVNGVSRVEEDEEELD 84
          R+  +    LK+   +V G+ +  E    L 
Sbjct: 59 REGGQYEQTLKTAGGVVGGLHQRPEYNVPLP 89

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
cd07762	180	CYTH-like_Pase_1 Uncharacterized subgroup 1 of the	100.0
COG4116	193	Uncharacterized protein conserved in bacteria [Fun	100.0
cd07756	197	CYTH-like_Pase_CHAD Uncharacterized subgroup of th	100.0
COG3025	432	Uncharacterized conserved protein [Function unknow	99.97
cd07758	196	ThTPase Thiamine Triphosphatase. ThTPase is a solu	99.94
PF01928	185	CYTH: CYTH domain; InterPro: IPR008172 The CYTH do	99.93
cd07374	174	CYTH-like_Pase CYTH-like (also known as triphospha	99.93
cd07890	169	CYTH-like_AC_IV-like Adenylyl cyclase (AC) class I	99.93
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	99.9
COG1437	178	CyaB Adenylate cyclase, class 2 (thermophilic) [Nu	99.83
cd07750	214	PolyPPase_VTC_like Polyphosphate(polyP) polymerase	99.35
cd07761	146	CYTH-like_CthTTM-like Clostridium thermocellum (Ct	99.31
cd07891	148	CYTH-like_CthTTM-like_1 CYTH-like Clostridium ther	99.21
COG2954	156	Uncharacterized protein conserved in bacteria [Fun	99.07
PLN02318	656	phosphoribulokinase/uridine kinase	98.72
cd07751	290	PolyPPase_VTC4_like Polyphosphate(polyP) polymeras	98.58
PF09359	283	VTC: VTC domain; InterPro: IPR018966 This presumed	97.83
cd07892	303	PolyPPase_VTC2-3_like Polyphosphate(polyP) polymer	97.64

>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily

Probab=100.00  E-value=1.7e-40  Score=265.18  Aligned_cols=179  Identities=25%  Similarity=0.344  Sum_probs=160.1

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      +|||+|+ +++++.+.++.+++..  ..+..|+|+|||||+++|++++++|||| .|++|+||+|+|+.    .+ +.||
T Consensus         1 iEiE~K~-~l~~~~~~~l~~~~~~--~~~~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~-r~E~   72 (180)
T cd07762           1 LEIEFKN-LLTKEEYEQLKNAFDL--KDFFKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE----VG-LLET   72 (180)
T ss_pred             CcEEEEe-cCCHHHHHHHHHhccc--CCcEEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CC-CcEE
Confidence            6999999 8999999999998653  4568899999999999999999999999 89999999999975    22 4599


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE  159 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E  159 (198)
                      |.+|+.++++.++.. ..+|   ++.+..++..+|+ ....|.++++++|.|.+|.++++++|||++.|.++.+||||+|
T Consensus        73 e~~l~~~~~~~~~~~-~~~~---~~~~~~~L~~lg~-~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e  147 (180)
T cd07762          73 NQPLTLEEAEKLIKG-GTLP---EGEILDKLKELGI-DPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYE  147 (180)
T ss_pred             eecCCHHHHHHHhcc-ccCC---chHHHHHHHHhCC-CcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEE
Confidence            999998899888887 4466   3566777788998 6568999999999999999999999999999998888999999


Q ss_pred             eCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhh
Q 029129          160 SSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFR  193 (198)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~  193 (198)
                      +.+++.|++.|..+++++||+++++ .||++||+
T Consensus       148 ~~~~~~~~~~~~~ll~~~gi~~~~~-~sKi~R~~  180 (180)
T cd07762         148 VDDYEAGKKAFLELLKQYNIPYRPA-KNKIARFL  180 (180)
T ss_pred             eCCHHHHHHHHHHHHHHcCCCcccC-cchhheeC
Confidence            9999889999999999999999997 69999986

Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup

>COG4116 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=5.6e-39  Score=248.69  Aligned_cols=181  Identities=27%  Similarity=0.357  Sum_probs=164.0

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcc-eEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKT-LRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~-~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      +|||+|- +++.+.|.+|...+...  .+ ..|+|+||||||+.|+.+++||||| .+..+++|||.|...  |+  . |
T Consensus         5 lEIE~Kt-lltk~ey~rL~~~~~~~--~~d~~QtN~YiDT~dF~LKek~~ALRIR~~e~~~elTLK~P~~v--Gl--l-E   76 (193)
T COG4116           5 LEIEFKT-LLTKEEYNRLISQFTIV--EPDVLQTNHYIDTDDFKLKEKKSALRIRTKENQYELTLKVPAKV--GL--L-E   76 (193)
T ss_pred             hhhHHHH-HhhHHHHHHHHHHhccC--CCcceeeeeeecCcchhhhhhhcceeEEeecceEEEEecCchhc--Cc--h-h
Confidence            5999996 99999999999997642  33 8899999999999999999999999 889999999999886  66  6 9


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      ++.+|+.+++..++.. ..+|.   +.+..++..+|+ +.+.|..+|+++|.|.+..++.|.+|||++.|.+..|||||+
T Consensus        77 ynq~Ls~e~a~~~l~~-~~~P~---g~v~d~l~~~gI-~~~~l~~~GsLtT~R~E~~~~~Gll~LD~s~Y~~~~DYElE~  151 (193)
T COG4116          77 YNQILSLEEAKLALIS-ANLPE---GEVLDILEKLGI-KDSALQVFGSLTTIRAEKKYEIGLLVLDKSRYLGIEDYELEF  151 (193)
T ss_pred             hcccccHHHHHHHhhc-cCCCc---cHHHHHHHHcCC-CHHHHHhhhhhhhhhhhhhccCceEEEchhhhCCccceeEEE
Confidence            9999999998888877 67885   555556677999 778899999999999999999999999999999999999999


Q ss_pred             eeCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhhcC
Q 029129          159 ESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAG  195 (198)
Q Consensus       159 E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~  195 (198)
                      |+.+.+.|+..|+.+|++++|+.++. .||++||+..
T Consensus       152 Ev~d~~qGk~~F~~~L~e~~I~~~~a-~nKv~RF~~~  187 (193)
T COG4116         152 EVSDYEQGKQDFQKLLKEFSIEQHPA-KNKVQRFFKK  187 (193)
T ss_pred             EeccHHHhHHHHHHHHHHcCcccccc-HHHHHHHHHH
Confidence            99999999999999999999999995 5999999864

>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain

Probab=100.00  E-value=3.4e-33  Score=225.85  Aligned_cols=180  Identities=23%  Similarity=0.218  Sum_probs=138.0

Q ss_pred             eeeeecCCCCHHHHHHHHHHhcc--c---cCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccc
Q 029129            2 EVELKLCLKSAASHKQLISLLSQ--F---HTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSR   75 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~~~~--~---~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~   75 (198)
                      |||+|| .++++.+.+|.++...  .   ......++|+||||||++|++++++|||| .|++|+||||+++...+|++.
T Consensus         1 EiElKl-~~~~~~~~~l~~~~~l~~~~~~~~~~~~l~~~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~   79 (197)
T cd07756           1 EIELKL-LLPPEDLEALAAHPLLAALAAGRAQTRRLHNTYFDTPDLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQ   79 (197)
T ss_pred             CeeEee-cCCHHHHHHHHhchhhhccccCCcceeeeeeeeeeCcChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCccc
Confidence            899999 9999999999987322  1   12467899999999999999999999999 899999999999877678877


Q ss_pred             eeeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECC----EEEEecceecCCC
Q 029129           76 VEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNS----LILEVDETKYDFG  151 (198)
Q Consensus        76 ~~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~----~~l~lD~~~~~~~  151 (198)
                      +.|||++|+.+.++--+.  ..+|.  ..++..+    +  ....|.|+....+.|..|.+..    .+||+|.+.+..+
T Consensus        80 R~E~e~~l~~~~~~l~~~--~~~~~--~~~~~~l----~--~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~  149 (197)
T cd07756          80 RPEWEVPLPGPAPDLDLA--SILPD--GELLEAL----A--ALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAG  149 (197)
T ss_pred             ceeEcccCCCCCcCcchh--hcCCc--ccCHhhh----h--ccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeC
Confidence            779999998766542110  12332  1222222    1  1135788877777999999943    5899999876543


Q ss_pred             ----ceEEEEEeeCChhhHHHHHHHHHH-hcCCCCcccCCCHHHHhh
Q 029129          152 ----NNYEVECESSDPEGVKKLLEGFLN-ENGIEFEYSQMTKFAVFR  193 (198)
Q Consensus       152 ----~~~EiE~E~~~~~~~~~~~~~~l~-~~~i~~~~~~~sK~~R~~  193 (198)
                          ++||||+|+++|+. .++|..+.+ ....+++++..||++|-+
T Consensus       150 ~~~~~i~EiElELk~G~~-~~L~~la~~l~~~~~l~~~~~SKa~rG~  195 (197)
T cd07756         150 DRSEPICEIELELKSGDP-AALFALARRLAERLPLRLSNRSKAERGY  195 (197)
T ss_pred             CCccceEeEEEEecCCCH-HHHHHHHHHHHHhCCccCCCcCHHHhcc
Confidence                59999999999986 367777666 677789999999999954

This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp

>COG3025 Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=6.6e-32  Score=235.30  Aligned_cols=178  Identities=21%  Similarity=0.227  Sum_probs=133.8

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhcc---ccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccce
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQ---FHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRV   76 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~---~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~   76 (198)
                      +|||+|| +++++....+.+.+..   ....+..+.|+||||||..|++++++|||| .|++|+||+|+.|...+|+|+|
T Consensus         3 ~EIELKf-~Vs~~aa~~l~~~L~~~~~~~~~~~~L~n~YyDTpd~~L~~~~~gLRIR~~~~~y~~TlKtaG~v~gGlH~R   81 (432)
T COG3025           3 QEIELKF-LVSPEAALALLSKLADYTISEHTPQQLANIYYDTPDNWLRRHDMGLRIRREGGQYEQTLKTAGGVVGGLHQR   81 (432)
T ss_pred             cchhhhe-ecCHHHHHHHHHHhhhcccCCcchhhHhhhhcCCchHHHHhCCceEEEeccCCeEEEEEEecCccccccccC
Confidence            6999999 9999998888888654   234567789999999999999999999999 8899999999999999999999


Q ss_pred             eeeeecCCHHHHHhhhcCC-CCcchhhhHHHHHHHHHhCCCCccceEEEee--eEEEEEEEEECC--EEEEecceecCCC
Q 029129           77 EEDEEELDPVVAKECIENP-SKLFEIESRVVRRVREEFGVGSEVGLVCLGG--FENLRQVYEWNS--LILEVDETKYDFG  151 (198)
Q Consensus        77 ~E~e~~l~~~~~~~~l~~~-~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~t~R~~~~~~~--~~l~lD~~~~~~~  151 (198)
                      +|||++++++.++ ....| ..+|.       .++   -......|+|+.+  |++.++.+.+++  .+|+||.+.+..|
T Consensus        82 pEyn~~L~~~~~~-~~~~p~~~~p~-------~~~---~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Ag  150 (432)
T COG3025          82 PEYNVPLPEDTLD-LAELPRDRWPA-------GIF---PLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAG  150 (432)
T ss_pred             ccccccCCCCCcc-hhhChhhhccc-------ccC---CcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccC
Confidence            9999999988765 11111 12221       110   1101245777733  443444444444  3889999887655


Q ss_pred             ----ceEEEEEeeCChhhHHHHHHHHHH-hcCCCCcccCCCHHHH
Q 029129          152 ----NNYEVECESSDPEGVKKLLEGFLN-ENGIEFEYSQMTKFAV  191 (198)
Q Consensus       152 ----~~~EiE~E~~~~~~~~~~~~~~l~-~~~i~~~~~~~sK~~R  191 (198)
                          ++||||+|+++|++ .++|..+-. ..+.+.+.+..||++|
T Consensus       151 e~q~picElElELKsG~~-~aL~~la~~L~~~~~l~~s~lSKAeR  194 (432)
T COG3025         151 ERQEPICELELELKSGTP-QALLALARTLAENTGLRLSSLSKAER  194 (432)
T ss_pred             cccCchhheehhhhcCCH-HHHHHHHHHHHHhCCccccchhhhhh
Confidence                59999999999985 456666555 6677888888999999

>cd07758 ThTPase Thiamine Triphosphatase

Probab=99.94  E-value=5.2e-25  Score=178.02  Aligned_cols=174  Identities=16%  Similarity=0.171  Sum_probs=121.4

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhcc--ccCcceEeeeeeecCCChhHHhCCCEEEEecCCEEEEEEecCCcc--ccCccce
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQ--FHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSL--VNGVSRV   76 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~--~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~TlK~~~~~--~~g~~~~   76 (198)
                      ||||+|| .+.++...+|.. ++.  .......++|+|||||+++|++++++||||.+ .|++|+|.+...  .++..  
T Consensus         1 ~EVE~Kf-~~~~~~~~~L~~-~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~-~~~lk~~~~~~~~~~~~~~--   75 (196)
T cd07758           1 LEVERKF-RCGPSAEERLRK-LGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG-QWELKIPPGGDPPTAGANT--   75 (196)
T ss_pred             CcEEEEe-cCCHHHHHHHHh-ccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC-eEEEEecCCCCCCCCCCcc--
Confidence            7999999 666555555554 333  34567889999999999999999999999955 676555543321  12232  


Q ss_pred             eeeeecCCHHHHHhhhc---CCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC-CEEEEecceecCCCc
Q 029129           77 EEDEEELDPVVAKECIE---NPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN-SLILEVDETKYDFGN  152 (198)
Q Consensus        77 ~E~e~~l~~~~~~~~l~---~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~-~~~l~lD~~~~~~~~  152 (198)
                       +++......++...+.   . ...|.  +..+..++..+|+      .++++|+|.|.+|.++ +..||||++.|+ ..
T Consensus        76 -~~~E~~~~~~~~~~v~~~~~-~~~~~--~~~~~~~L~~lgf------~~~~~~~k~R~~y~~~~g~~v~LD~~~~G-~~  144 (196)
T cd07758          76 -RYEELTGEAAIAAALRKLLG-GALPS--AGGLGDELANLGL------REFASFVTKRESWKLDGAFRVDLDRTDFG-YS  144 (196)
T ss_pred             -eEEecccHHHHHHHHHHhcC-CCCCc--chhHHHHHhhCCC------eEEEEEEEEEEEEEcCCCcEEEEecccCC-cc
Confidence             4444333334333333   2 22332  2345566665555      7999999999999998 569999999976 56


Q ss_pred             eEEEEEeeCC---h---hhHHHHHHHHHHhcCCCC-----cccCCCHHH
Q 029129          153 NYEVECESSD---P---EGVKKLLEGFLNENGIEF-----EYSQMTKFA  190 (198)
Q Consensus       153 ~~EiE~E~~~---~---~~~~~~~~~~l~~~~i~~-----~~~~~sK~~  190 (198)
                      ++|||+|+.+   .   +.+.+.+..+++++|+.+     ...+.+|+.
T Consensus       145 ~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~~~~~~~~~~~gk~~  193 (196)
T cd07758         145 VGEVELLVEEEDNEAEVPAALAKIDELISALMERYLWAFKQGRPPGKLT  193 (196)
T ss_pred             eEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCccccccCCCCccceE
Confidence            8999999876   2   357888999999999998     444566653

ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []

Probab=99.93  E-value=1.6e-25  Score=178.14  Aligned_cols=173  Identities=27%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             CeeeeecCCCCHHHHHHHHHH---hccccCcceEeeeeeecCCChhHHhCCCEEEEe--cCCEEEEEEecCCccccCccc
Q 029129            1 MEVELKLCLKSAASHKQLISL---LSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR--RDTRCVLCLKSKPSLVNGVSR   75 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~---~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR--~~~~~~~TlK~~~~~~~g~~~   75 (198)
                      +|||+|+ ++++.++.+|...   +........+|+|+|||||+++|.+++.+||||  .|+++.+|+|.++...  .  
T Consensus         2 ~EiE~K~-~v~~~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~--~--   76 (185)
T PF01928_consen    2 IEIEIKF-LVPESDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDG--P--   76 (185)
T ss_dssp             EEEEEEE-EESHHHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSS--S--
T ss_pred             EEEEEEE-EcCHHHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccC--c--
Confidence            4999999 7778888887432   333345678899999999999999999999999  4888999999998752  2  


Q ss_pred             eeeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEE
Q 029129           76 VEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYE  155 (198)
Q Consensus        76 ~~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~E  155 (198)
                      +.|.+..++.++.+..+.+        .+.+..++..++      +.+++.+.+.|+.|.+++++|++|.+.+..+.++|
T Consensus        77 ~~e~~~~~~r~e~e~~i~~--------~~~~~~~l~~l~------l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~E  142 (185)
T PF01928_consen   77 REEIEFEVSREEYEAPISD--------AEEMREILEALG------LRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLE  142 (185)
T ss_dssp             EEEEEEEESHHCCEEEHSH--------HHHHHHHHHHTT------CEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred             ccccceeecchhhhccccc--------hHHHHHHHHHhc------CceeEEEEEEEEEEEECCEEEEEEEEecceEEEEE
Confidence            3355555554443322221        234445555444      47888999999999999999999999988778899


Q ss_pred             EEEeeCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhh
Q 029129          156 VECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFR  193 (198)
Q Consensus       156 iE~E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~  193 (198)
                      ||++..+++.+...+..++...+ .+..+..||+.|++
T Consensus       143 iE~~~~~~~~~~~~~~~i~~~~~-~l~~~~~s~~~r~y  179 (185)
T PF01928_consen  143 IEIESEDEEDLKEAAEEILALLN-ELGISENSKIERSY  179 (185)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH-HTTEEGGGBHHSHH
T ss_pred             EEEcCCCHhHHHHHHHHHHHHhh-hcCCCccchHHHHH
Confidence            99988877766666666554222 22345578888865

It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....

>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases

Probab=99.93  E-value=2.2e-25  Score=176.46  Aligned_cols=146  Identities=24%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             eeeeecCCCCHHHHHHHHHH----hccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccce
Q 029129            2 EVELKLCLKSAASHKQLISL----LSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRV   76 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~----~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~   76 (198)
                      |||+|| .++++.+.++..+    ++.......++.|+||||||++|.++++.||+| .|++|.||+|+++..    +.+
T Consensus         1 EiElK~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~YfDT~d~~l~~~~lrlR~r~~~~~~~~TlK~~~~~----~~r   75 (174)
T cd07374           1 EVERKF-RVPDDAVLPLLLGVPGVLGVGEPETVQLRAIYFDTPDLRLARAGLRLRRRTGGADAGWHLKLPGGI----SRR   75 (174)
T ss_pred             CeeEEE-cCChHHhhHHHhhchhhcccccccceeeeeeEecCccchhhhCCcEEEEEcCCCccEEEEEccCCC----CCc
Confidence            899999 8899999888864    222234567899999999999999999999988 778999999999763    446


Q ss_pred             eeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECC-----EEEEecceecC--
Q 029129           77 EEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNS-----LILEVDETKYD--  149 (198)
Q Consensus        77 ~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~-----~~l~lD~~~~~--  149 (198)
                      .|||++|+...++..+..         . ...+ . ..+ ....|.|+.++.+.|..|.++.     .+||||.+.+.  
T Consensus        76 ~E~e~~l~~~~~~~~~~~---------~-~~~~-~-~~~-~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~  142 (174)
T cd07374          76 TEVRAPLGDAAAVAPLLL---------A-AALV-L-AVT-RGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVL  142 (174)
T ss_pred             eEEEeecCCccCCccccc---------c-hhhe-e-eec-CCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEc
Confidence            699999987665432211         1 0011 1 122 3356899999999999999963     68999999985  


Q ss_pred             --CCceEEEEEeeCChhh
Q 029129          150 --FGNNYEVECESSDPEG  165 (198)
Q Consensus       150 --~~~~~EiE~E~~~~~~  165 (198)
                        +.++||||+|+++|+.
T Consensus       143 ~~~~~~~e~E~El~~~~~  160 (174)
T cd07374         143 DGGGTQYWREVEVELPDG  160 (174)
T ss_pred             CCCcceEEEEEEEEEcCC
Confidence              3479999999988754

CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.

>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

Probab=99.93  E-value=5e-24  Score=168.25  Aligned_cols=157  Identities=21%  Similarity=0.221  Sum_probs=126.8

Q ss_pred             eeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cC--CEEEEEEecCCccccCccceee
Q 029129            2 EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RD--TRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~--~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      |+|+|+++.+++.+.+.+..++........|+|+|||||+++|.+++.+|||| .+  +++++|+|++.... +...+.|
T Consensus         1 EvEiK~~v~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~-~~~~~~E   79 (169)
T cd07890           1 EVEIKARVDDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDG-GPKVREE   79 (169)
T ss_pred             CEEEEEEeCCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCC-CccceEE
Confidence            89999966668888777777544344678999999999999999999999999 66  78999999987642 3545569


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      |+.++++                 ...+..++..+|+      .+++.++|.|.+|.++++.|+||.+... |.+.|||+
T Consensus        80 ~e~~v~~-----------------~~~~~~iL~~lg~------~~~~~~~K~R~~~~~~~~~v~lD~~~~l-G~f~EiE~  135 (169)
T cd07890          80 IETEVAD-----------------PEAMKEILERLGF------GPVGRVKKEREIYLLGQTRVHLDRVEGL-GDFVEIEV  135 (169)
T ss_pred             EEEecCC-----------------HHHHHHHHHHcCC------ceeEEEEEEEEEEEECCEEEEEEccCCC-CceEEEEE
Confidence            9998852                 1234445565666      5778899999999999999999999854 57999999


Q ss_pred             eeCChhhHHHHHHHHHHhcCCCCcc
Q 029129          159 ESSDPEGVKKLLEGFLNENGIEFEY  183 (198)
Q Consensus       159 E~~~~~~~~~~~~~~l~~~~i~~~~  183 (198)
                      ...+.+.+.+.+..+.+.+|+....
T Consensus       136 ~~~~~~~~~~~l~~~~~~lg~~~~~  160 (169)
T cd07890         136 VLEDIEEAEEGLGEAAELLGLLEYD  160 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHcCCCccC
Confidence            9988888889999999999997643

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=99.90  E-value=3.8e-22  Score=158.48  Aligned_cols=158  Identities=17%  Similarity=0.165  Sum_probs=120.2

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      +|+|+|+++.+.+.....+..++........|+|+|||+|+++|...+.+|||| .++.+.+|+|+|+... +...+.|+
T Consensus         2 ~EvE~K~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~-~~~~~~E~   80 (174)
T TIGR00318         2 IEVEVKAKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDN-ESKTRKEI   80 (174)
T ss_pred             EEEEEEEEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCC-cceEEEEE
Confidence            499999966677765444444443345678899999999999999999999999 7788999999987542 33445589


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE  159 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E  159 (198)
                      +..|++.                 ..+..++..+|+      .+++.+++.|..|.+++..++||...-. |.+.|||+.
T Consensus        81 e~~v~d~-----------------~~~~~iL~~LG~------~~~~~v~K~R~~~~l~~~~i~lD~v~~l-G~FvEIE~~  136 (174)
T TIGR00318        81 EFKIEDI-----------------ENALQILKKLGF------KKVYEVIKKRRIYQTNELNVSIDDVEGL-GFFLEIEKI  136 (174)
T ss_pred             EEEECCH-----------------HHHHHHHHHCCC------eEEEEEEEEEEEEEECCEEEEEEccCCC-ccEEEEEEe
Confidence            8888321                 233345555676      5788899999999998889999988744 588999997


Q ss_pred             eCC---hhhHHHHHHHHHHhcCCCCcc
Q 029129          160 SSD---PEGVKKLLEGFLNENGIEFEY  183 (198)
Q Consensus       160 ~~~---~~~~~~~~~~~l~~~~i~~~~  183 (198)
                      ..+   .+++.+.+..+++++||+...
T Consensus       137 ~~~~~~~~~~~~~i~~~~~~LGl~~~~  163 (174)
T TIGR00318       137 INNINDKDLALEEIFEIINQLGIKDNI  163 (174)
T ss_pred             cCCccchHHHHHHHHHHHHHcCCCcCc
Confidence            754   345678889999999994444

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]

Probab=99.83  E-value=5.3e-19  Score=139.06  Aligned_cols=156  Identities=20%  Similarity=0.278  Sum_probs=122.7

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe--cCCEEEEEEecCCccccCccceee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR--RDTRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR--~~~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      +|+|+|++..+.+.....+...+........|.|+|||.|.++|..++.+||||  .|+...+|+|+|..+... ..+.|
T Consensus         2 ~EVEvK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~-k~r~E   80 (178)
T COG1437           2 YEVEVKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRES-KTREE   80 (178)
T ss_pred             eeEEEEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccc-cceee
Confidence            599999954456676666666555556778999999999999999999999999  778899999999875322 23558


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      ++..+++.                 +....++..+|+      .+++...+.|..|.+++..++||.+... |.+.|||+
T Consensus        81 ~E~~v~D~-----------------~~~~~il~~LGF------~~~~~VkK~R~iY~~~~~~i~lD~VegL-G~F~EIE~  136 (178)
T COG1437          81 IEIEVSDV-----------------EKALEILKRLGF------KEVAVVKKTREIYKVGNVTIELDAVEGL-GDFLEIEV  136 (178)
T ss_pred             EEEEeCCH-----------------HHHHHHHHHcCC------ceeeEEEEEEEEEeeCCEEEEEecccCC-cccEEEEE
Confidence            88877521                 223345566787      4677788999999999999999999864 58999999


Q ss_pred             eeCChhh---HHHHHHHHHHhcCCCC
Q 029129          159 ESSDPEG---VKKLLEGFLNENGIEF  181 (198)
Q Consensus       159 E~~~~~~---~~~~~~~~l~~~~i~~  181 (198)
                      ++.+.++   +...+..+++++|+..
T Consensus       137 ~~~d~~e~~~~~~~~~~i~~~lGl~~  162 (178)
T COG1437         137 MVDDENEIDGAKEEIEEIARQLGLKE  162 (178)
T ss_pred             ecCCchhhHHHHHHHHHHHHHhCCCh
Confidence            9987653   4577889999999963

>cd07750 PolyPPase_VTC_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins

Probab=99.35  E-value=1.7e-11  Score=100.26  Aligned_cols=175  Identities=19%  Similarity=0.153  Sum_probs=110.1

Q ss_pred             eeeecCCCCHHHHHHHHHHhcc-----ccC--cceEeeeeeecCCChhH-HhCCC------EEEEe---c-CCEEEEEEe
Q 029129            3 VELKLCLKSAASHKQLISLLSQ-----FHT--KTLRQHNLFFDTSTSFL-SSQRT------VLRLR---R-DTRCVLCLK   64 (198)
Q Consensus         3 iE~K~~l~~~~~~~~l~~~~~~-----~~~--~~~~~~n~YfDTpd~~L-~~~~~------~LRiR---~-~~~~~~TlK   64 (198)
                      +|+|| +++++++..|...+..     ...  ......|+|||||+++| ..+..      .||+|   . ++...+.+|
T Consensus         2 ~E~Ky-~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~i~s~YfDt~~~~ly~~~~~g~~~r~K~R~R~Y~~~~~~~flE~K   80 (214)
T cd07750           2 YERKY-LVPASQLEALLAALKPHLRVDEYAGNRDYTIRSLYFDTPDLDLYREKLNGRRRREKVRIRSYGDSDGLIFLEVK   80 (214)
T ss_pred             ceEEE-EeCHHHHHHHHHHHHhHCCCCCCCCCCCceEEEEEecCCcHHHHHHHhcCcCccceEEEEEcCCCCCcEEEEEE
Confidence            69999 9999999888887542     111  25678999999999999 44444      49999   3 567899999


Q ss_pred             cCCccccCccceeeeeecCCHHHHHhhhcCCCCcchhhh-H-HHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC--CEE
Q 029129           65 SKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIES-R-VVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN--SLI  140 (198)
Q Consensus        65 ~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~~~~~p~~~~-~-~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~--~~~  140 (198)
                      .+..   +.  ......+++..++..++.. ...+.... . ....... ..  ....|.|+....=.|..|...  +..
T Consensus        81 ~k~~---~~--~~K~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~L~P~~~~~Y~R~a~~~~~~~~R  151 (214)
T cd07750          81 TKRG---RV--TYKRRLPLSPEDAERLLAG-GYFFLLESQDPLAEEFYF-RM--RYKQLRPVLLVSYRREALVSPDGGVR  151 (214)
T ss_pred             EEEC---CE--EEEEEecCCHHHHHHHHcC-CCccccccchhHHHHHHH-HH--hcCCCCceEEEEEeeEEeecCCCCEE
Confidence            8866   32  2255688888887777765 21111000 0 0111111 11  123466663322267777663  358


Q ss_pred             EEecceecC---------------CCceEEEEEeeCChhhHHHHHHHHHHhcCCCCcccCCCHH
Q 029129          141 LEVDETKYD---------------FGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKF  189 (198)
Q Consensus       141 l~lD~~~~~---------------~~~~~EiE~E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~  189 (198)
                      |++|.+...               ...++++++|+|.+...-.++..++...++.  +..-||+
T Consensus       152 iT~D~~l~~~~~~~~~~~~~~~~~~~~~~~viLElK~~~~~p~~~~~ll~~~~l~--~~~~SKY  213 (214)
T cd07750         152 ITFDTNLRYRDEDGDLFSGNLGTPILPPDLVILEVKYDGALPLWLADLLSSHGLE--PTSFSKY  213 (214)
T ss_pred             EEEeCCceeEeccccccCcccCCccCCCCcEEEEEeeCCCChHHHHHHHHhcCCE--eCCcccc
Confidence            899975311               1247999999998765345777777666554  4456885

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily

Probab=99.31  E-value=5.5e-11  Score=91.96  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=78.2

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      ||||.|| ++  +.+...+   .......+.  ..|+-+        +.++||| .|+++.+|+|++.    |++|. |+
T Consensus         1 ~EiERKf-Lv--~~~~~~~---~~~~~~~i~--q~Yl~~--------~~~vRvR~~~~~~~lT~K~~~----~~~R~-E~   59 (146)
T cd07761           1 MEIERKF-LV--NELPAGL---ESYKKVEIR--QGYLSI--------NPEVRIRSKGEKYILTVKSGG----GLVRE-EI   59 (146)
T ss_pred             CcEEEEE-Eh--hhhhhhc---ccCCCcEEE--EEeccC--------CcEEEEEEECCEEEEEEEcCC----CcceE-EE
Confidence            8999999 88  2332222   111223344  489865        4799999 8999999999875    45555 99


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEE-CCEEEEecceecCCCceEEEEE
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEW-NSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~-~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      |.+|+..++++++..                  ..         ...+++.|..|.+ ++..+++|.....+...+-+|+
T Consensus        60 E~~I~~~~~~~ll~~------------------~~---------~~~I~K~R~~~~~~~~~~~~vD~~~g~~~gL~~~Ev  112 (146)
T cd07761          60 EIEIDKKEFEHLLEK------------------TE---------GNLIEKTRYLIPLEGGLLAELDVFEGRLTGLVYAEV  112 (146)
T ss_pred             EEeCCHHHHHHHHHh------------------CC---------CCeEEEEEEEEEeCCCcEEEEEEEcCCCCCeEEEEE
Confidence            999987665433311                  01         1126789999999 7889999986644445667777


Q ss_pred             eeCChh
Q 029129          159 ESSDPE  164 (198)
Q Consensus       159 E~~~~~  164 (198)
                      |+.+.+
T Consensus       113 E~~se~  118 (146)
T cd07761         113 EFPSEE  118 (146)
T ss_pred             EcCCch
Confidence            776644

CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.

>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1

Probab=99.21  E-value=2.2e-10  Score=88.77  Aligned_cols=114  Identities=25%  Similarity=0.232  Sum_probs=79.4

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      ||||.|| ++....+...  .   .....+.|  .|+.+      ..+.+|||| .|+++.+|+|++..   |..+. |+
T Consensus         1 ~EiERKf-Lv~~~~~~~~--~---~~~~~I~Q--~Yl~~------~~~~~lRiR~~~~~~~lT~K~~~~---~~~R~-E~   62 (148)
T cd07891           1 LEIERKF-LVKGDAWRAL--A---AKGVRIRQ--GYLST------DPERTVRVRIAGDRAYLTIKGPTN---GLSRY-EF   62 (148)
T ss_pred             CeEEEEE-EECCcccccc--c---CCCcEEEE--EeeeC------CCCcEEEEEEeCCEEEEEEEeCCC---CceEE-EE
Confidence            8999999 9886666542  1   11233444  89974      456799999 89999999999866   44444 99


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCc--eEEEE
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGN--NYEVE  157 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~--~~EiE  157 (198)
                      |.+|+.++++.++..                   ..        ...+.+.|..+.+++..++||.....+..  +.|||
T Consensus        63 E~~i~~~~~~~l~~~-------------------~~--------~~~I~K~R~~~~~~~~~~~lD~~~g~~~gL~~~EiE  115 (148)
T cd07891          63 EYEIPLADAEELLAL-------------------CE--------GPVIEKTRYRVPHGGHTWEVDVFHGENAGLVVAEIE  115 (148)
T ss_pred             EEeCCHHHHHHHHhc-------------------CC--------CCeEEEEEEEEEeCCEEEEEEEEcCCCCceEEEEEE
Confidence            999987776544321                   00        12257899999999999999997644433  55555


Q ss_pred             Ee
Q 029129          158 CE  159 (198)
Q Consensus       158 ~E  159 (198)
                      +.
T Consensus       116 ~~  117 (148)
T cd07891         116 LP  117 (148)
T ss_pred             cC
Confidence            53

This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.

>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.07  E-value=1.3e-09  Score=82.62  Aligned_cols=113  Identities=29%  Similarity=0.275  Sum_probs=81.0

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      +|||.|| ++..+.++++.+..     -...|  .|..|+      .+.++||| .|++..+|+|++.+   +++|. |+
T Consensus         3 ~EIERKF-LV~~d~WR~~a~~~-----i~~~q--~y~at~------~~~tVRVRi~g~~A~LTiK~~~~---~~~R~-Ef   64 (156)
T COG2954           3 IEIERKF-LVAGDGWRQLADGS-----IYRRQ--GYLATE------QGRTVRVRIVGDRAYLTIKGGAS---GLSRS-EF   64 (156)
T ss_pred             ceeeeee-eecCccHHHhhccc-----eeecc--eeeecC------CCcEEEEEEecceEEEEEEcccc---ceeee-ee
Confidence            5999999 99999999888652     12223  676655      45689999 99999999999877   56666 99


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecce--ecCCCceEEEE
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDET--KYDFGNNYEVE  157 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~--~~~~~~~~EiE  157 (198)
                      |.+++..++.+||..              +.   |.        +  .++.|.-+.+.|....+|.-  ...+-...|||
T Consensus        65 EY~iPl~DA~e~l~~--------------~~---g~--------~--IEK~R~~v~~~G~~wEVDvF~G~n~gLvvAEvE  117 (156)
T COG2954          65 EYEIPLADAEEMLTT--------------AC---GR--------V--IEKTRYPVRHGGFLWEVDVFLGDNAGLVVAEVE  117 (156)
T ss_pred             eecccccCHHHHHHH--------------hc---ch--------h--eeeeEeeeeeCCEEEEEeeecCcccceEEEEEE
Confidence            999887776665543              11   11        1  56788888888877788863  22233467777


Q ss_pred             E
Q 029129          158 C  158 (198)
Q Consensus       158 ~  158 (198)
                      +
T Consensus       118 l  118 (156)
T COG2954         118 L  118 (156)
T ss_pred             c
Confidence            6

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.72  E-value=3.2e-07  Score=84.84  Aligned_cols=122  Identities=15%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             ceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCcc----c-eeeeeecCCHHHHHhhhcCCCCcchhh
Q 029129           29 TLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVS----R-VEEDEEELDPVVAKECIENPSKLFEIE  102 (198)
Q Consensus        29 ~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~----~-~~E~e~~l~~~~~~~~l~~~~~~p~~~  102 (198)
                      .....++||.-|..++...+.||||| .++++.+|+|.+-..  |-.    + +.|+++.+                   
T Consensus       276 ~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~d--gp~ii~pk~~fEv~v~~-------------------  334 (656)
T PLN02318        276 TEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTD--EPFIISPRITFEVSVRL-------------------  334 (656)
T ss_pred             cceeeEEEecCCCCCchhccceEEEEecCCEEEEEEeccccc--CCeecCcceeEEEeeeh-------------------
Confidence            34458999999999999999999999 999999999944221  321    1 11332221                   


Q ss_pred             hHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEeeCChhhHHHHHHHHHHhcCCCCc
Q 029129          103 SRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       103 ~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E~~~~~~~~~~~~~~l~~~~i~~~  182 (198)
                         .. .+..+|+      +.++.+++.|.+|..++..|++|...-.+.++.|||     |. ++..+..+..++|+...
T Consensus       335 ---~~-gL~aLGy------~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIe-----g~-~r~~V~~~a~kLGl~g~  398 (656)
T PLN02318        335 ---LG-GLMALGY------TIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQ-----GK-DRLVVKDVAEQLGLEGS  398 (656)
T ss_pred             ---Hh-HHHHcCC------ceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEe-----hh-HHHHHHHHHHHcCCCCC
Confidence               11 3344677      456778999999999999999999987766688888     44 36777788889999776


Q ss_pred             ccCCC
Q 029129          183 YSQMT  187 (198)
Q Consensus       183 ~~~~s  187 (198)
                      ..+.|
T Consensus       399 ~i~~S  403 (656)
T PLN02318        399 YIPRT  403 (656)
T ss_pred             ccccc
Confidence            65544

>cd07751 PolyPPase_VTC4_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) protein VTC4, and similar proteins

Probab=98.58  E-value=2.4e-06  Score=73.16  Aligned_cols=185  Identities=13%  Similarity=0.050  Sum_probs=107.8

Q ss_pred             eeeecCCCCHHHHHHHHHHhccc------c--------------CcceEeeeeeecCCChhHHhCCC-------EEEEe-
Q 029129            3 VELKLCLKSAASHKQLISLLSQF------H--------------TKTLRQHNLFFDTSTSFLSSQRT-------VLRLR-   54 (198)
Q Consensus         3 iE~K~~l~~~~~~~~l~~~~~~~------~--------------~~~~~~~n~YfDTpd~~L~~~~~-------~LRiR-   54 (198)
                      .|.|+ .++++++..|...+...      .              .+....+|+|||||+++|-...+       .|||| 
T Consensus         8 ~e~Ky-~v~~~~~~~lk~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYFDtp~~~ly~~kl~k~~~r~klRlR~   86 (290)
T cd07751           8 RTTKY-WVHPRDVVPVKLAILKHLPVLVFNGSKEEEKEKEDVPPRDDSAITSVYFDNENLDLYHGRLERDEGAELIRLRW   86 (290)
T ss_pred             eeEEE-EEcHHHHHHHHHHHHhhCCceecCCccccccccccccCCCCceEEEEEecCCcHHHHHHHhcCCCCCceEEEEe
Confidence            68999 99999998777763210      0              11345799999999999986654       99999 


Q ss_pred             c-----CCEEEEEEecCCccc-cCccceeeeeecCCHHHHHhhhcCCCCcc-----------------hhhhHHHHHHHH
Q 029129           55 R-----DTRCVLCLKSKPSLV-NGVSRVEEDEEELDPVVAKECIENPSKLF-----------------EIESRVVRRVRE  111 (198)
Q Consensus        55 ~-----~~~~~~TlK~~~~~~-~g~~~~~E~e~~l~~~~~~~~l~~~~~~p-----------------~~~~~~~~~l~~  111 (198)
                      -     ++...+.+|....+. +|.  ..+...+++..++..+|.....+.                 .-+..++..+..
T Consensus        87 Yg~~~~~~~vflE~K~k~~~~~~~~--~~K~R~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~  164 (290)
T cd07751          87 YGGMQDTDTVFVERKTHHESWTGEK--SVKERFALKEKYVNSFLKGKYTVDKVFRKLRKEGKKSEAEIEKLEALATEIQY  164 (290)
T ss_pred             cCCCCCCCceEEEEEEeccCCccce--eEEEEeecCHHHHHHHHcCCcchHHHHHhhhhccccccccchhHHHHHHHHHH
Confidence            2     377889999886532 233  235668899888888876411110                 000122333322


Q ss_pred             HhCCCCccceEEEeeeEEEEEEEEEC---CEEEEeccee-cCC-------------------C--------ceEEEEEee
Q 029129          112 EFGVGSEVGLVCLGGFENLRQVYEWN---SLILEVDETK-YDF-------------------G--------NNYEVECES  160 (198)
Q Consensus       112 ~~~~~~~~~l~~~~~~~t~R~~~~~~---~~~l~lD~~~-~~~-------------------~--------~~~EiE~E~  160 (198)
                      ..   ....|.|+.-..=.|..|...   +..|.+|... +..                   .        +..=+|+-+
T Consensus       165 ~~---~~~~L~P~~~t~Y~R~Af~~~~d~~vRIT~Dt~L~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~f~~~ILEVK~  241 (290)
T cd07751         165 VI---LKRKLKPVVRTFYRRTAFQLPDDNRVRISLDTELCMIDERGRDGRRRTTLNDWPFKQLPDNEIVRFPYAVLEVKL  241 (290)
T ss_pred             HH---HhCCCcceEEEEEeEeeeecCCCCCEEEEEecCceeEecCccccccccccccCccccCCcccccCCCeEEEEEEe
Confidence            11   112455552222257777663   2478888642 110                   0        112233333


Q ss_pred             CC--hhhHHHHHHHHHHhcCCCCcccCCCHHHHhhc
Q 029129          161 SD--PEGVKKLLEGFLNENGIEFEYSQMTKFAVFRA  194 (198)
Q Consensus       161 ~~--~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~  194 (198)
                      ..  +...-.++..++...++..-++ -||+...+.
T Consensus       242 ~~~~~~~~P~Wi~~ll~~~~v~~v~~-FSKY~~G~A  276 (290)
T cd07751         242 QTQEGEEPPEWVEELLNSHLVEEVYK-FSKFLHGCA  276 (290)
T ss_pred             cCCCCCCCCHHHHHHHhhCCceECCC-cCHHHHHHH
Confidence            31  1222368999999888865443 499888554

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2,-3, and -4 contain polyP polymerase domains. S. cerevisiae VTC4 belongs to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>PF09359 VTC: VTC domain; InterPro: IPR018966 This presumed domain is found in the yeast vacuolar transport chaperone proteins VTC2, VTC3 and VTC4

Probab=97.83  E-value=0.0002  Score=60.95  Aligned_cols=90  Identities=21%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             eeeecCCCCHHHHHHHHHHhccc-------cC-------------cceEeeeeeecCCChhHHhC-------CCEEEEe-
Q 029129            3 VELKLCLKSAASHKQLISLLSQF-------HT-------------KTLRQHNLFFDTSTSFLSSQ-------RTVLRLR-   54 (198)
Q Consensus         3 iE~K~~l~~~~~~~~l~~~~~~~-------~~-------------~~~~~~n~YfDTpd~~L~~~-------~~~LRiR-   54 (198)
                      .|.|| +++++++..|...+...       ..             ......++|||||++++-..       ...+||| 
T Consensus         3 ~e~KY-~v~~~~~~~lk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~SlYfDt~~~~~y~~~l~~~~~r~klRiR~   81 (283)
T PF09359_consen    3 RETKY-WVHPDNLMELKQRLLKHLPVDEYGGSSEDKKDAAISDEKGDYTIRSLYFDTPDFDLYHDKLEGRENREKLRIRW   81 (283)
T ss_dssp             EEEEE-EE-HHHHHHHHHHHHTTS-BEEESTTS-----------GGGGEEEEEEEE-TT-HHHHHHHHT-TT-EEEEEEE
T ss_pred             EEEEE-EEcHHHHHHHHHHHHHhCCccccCCCccccccccccccCCCccEEEEEecCCChHHHHHHhcCCCCCceEEEEE
Confidence            68999 99999998888774321       11             13467999999999888765       3489999 


Q ss_pred             c------CCEEEEEEecCCccccCccceeeeeecCCHHHHHhhhcC
Q 029129           55 R------DTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIEN   94 (198)
Q Consensus        55 ~------~~~~~~TlK~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~   94 (198)
                      -      ++...+.+|.+.....+.... ....+++..++..++..
T Consensus        82 Yg~~~~~~~~vflE~K~k~~~~~~~~s~-K~R~~l~~~~~~~~l~g  126 (283)
T PF09359_consen   82 YGDNDPESSPVFLEIKTKHEGWTYEESV-KRRFPLKEKEAEDFLNG  126 (283)
T ss_dssp             ESSCCG---EEEEEEEEEEEGGGTEEEE-EEEEEEEGGGHHHHHTT
T ss_pred             eCCCCcCcceEEEEEEEecCCccccccc-eeEEEcCHHHHhhHhcC
Confidence            2      358889999886542221111 44577777777777743

This domain is also found in a variety of bacterial proteins. ; PDB: 3G3O_A 3G3R_B 3G3U_A 3G3Q_A 3G3T_A.

>cd07892 PolyPPase_VTC2-3_like Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, and -3 , and similar proteins

Probab=97.64  E-value=0.0021  Score=55.32  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             eecCCCCHHHHHHHHH----Hhcc--cc--------------CcceEeeeeeecCCChhHHhCCC-------EEEEe-c-
Q 029129            5 LKLCLKSAASHKQLIS----LLSQ--FH--------------TKTLRQHNLFFDTSTSFLSSQRT-------VLRLR-R-   55 (198)
Q Consensus         5 ~K~~l~~~~~~~~l~~----~~~~--~~--------------~~~~~~~n~YfDTpd~~L~~~~~-------~LRiR-~-   55 (198)
                      .|| .+.++++..+..    |+..  ..              ......+|.|||||+++|-..++       .|||| . 
T Consensus        10 ~Ky-wvh~dn~~evK~~IlrhLPvlvy~~~~~~~~~~~~~~~~~~~~ItSLYFDn~~~~ly~~kl~k~~~reklRlRwYg   88 (303)
T cd07892          10 YKF-WVHPDNLMEVKTRILRHLPVLVYNNQSSEDDDDVLGAGSEDPTITTLYFDNPNFDLYNDKLLKLNEAPTLRLRWTG   88 (303)
T ss_pred             EEE-EEcHHHHHHHHHHHHhhCCceeecCCcccccccccccCCCCCcEEEEEeCCCCHHHHHHHhcCcCCCceEEEEEcC
Confidence            588 888888755444    3321  10              12245799999999999987665       89999 4 


Q ss_pred             ----CCEEEEEEecCCccccCccceeeeeecCCHHHHHhhhcC
Q 029129           56 ----DTRCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIEN   94 (198)
Q Consensus        56 ----~~~~~~TlK~~~~~~~g~~~~~E~e~~l~~~~~~~~l~~   94 (198)
                          +....+..|....+. |.  ..+...+++...+..+|..
T Consensus        89 ~~~~~~~IflE~K~k~~~~-~~--~~K~R~~l~~k~v~~~l~g  128 (303)
T cd07892          89 KLSDKPDIFVEKKTFDENT-SS--FEEDKLQLKEKYINGFIFG  128 (303)
T ss_pred             CCCCCCCEEEEEEEEeCCC-Ce--eEEEEeccCHHHHHHHHcC
Confidence                366788899876531 22  2366788888888888865

Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. S. cerevisiae VTC-2,and -3 belong to this subgroup. For VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-strande

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
3v85_A	210	1.9 Angstrom Resolution Crystal Structure Of The Pr		4e-42

>pdb|3V85|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Protein Q9siy3 From Arabidopsis Thaliana Length = 210

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 126/210 (60%), Gaps = 12/210 (5%)
Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNXXXXXXXXXXXXQRTVLRLR------ 54
           MEVE+KL L +AA+H +L +LL+ +H KTL Q N            +R VLRLR      
Sbjct: 1   MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAA 60
Query: 55  ------RDTRCVLCLKSKPSLVNGVSRVXXXXXXLDPVVAKECIENPSKLXXXXXXXXXX 108
                    RC++ LK+KP+L NG+SRV      ++  + KEC+E+P+KL          
Sbjct: 61  VSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKR 120
Query: 109 XXXXXXXXXXXGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKK 168
                      G VCLGGFEN+R VYEW  + LEVDETKYDFGN YE+ECE+ +PE VK 
Sbjct: 121 VKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKT 180
Query: 169 LLEGFLNENGIEFEYSQMTKFAVFRAGKLP 198
           ++E FL E  IEF  S MTKFAVFR+GKLP
Sbjct: 181 MIEEFLTEEKIEFSNSDMTKFAVFRSGKLP 210
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2gfg_A	193	BH2851; antiparallel barrel, structural genomics,	9e-38
3tj7_A	195	GBAA_1210 protein; structural genomics, adenosine	4e-33
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	1e-12
1yem_A	179	Hypothetical protein; structural genomics, southea	5e-11
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	1e-08
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	1e-06
3bhd_A	234	Thtpase, thiamine triphosphatase; hydrolase, struc	6e-06

>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans} Length = 193

 Score =  128 bits (323), Expect = 9e-38
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 13/197 (6%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRC 59
           +E+E K  + S  + K+LIS L         Q N +F+T    L  Q + LR+R  +   
Sbjct: 6   IEIERKTLV-SKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIF 64

Query: 60  VLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
              LK         + + E  + L    AK  +E+        S  V     +  +    
Sbjct: 65  TFTLKQPHP-----AGLLETNQTLSKQEAKLALESA----HFPSGEVMDALRDLSIPIS- 114

Query: 120 GLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGI 179
            L  +G     R    +   IL +D + Y    +YE+E E +  E      +  L    I
Sbjct: 115 QLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSI 174

Query: 180 EFEYSQMTKFAVFRAGK 196
               ++  K   F + K
Sbjct: 175 SQVPTE-NKIQRFFSKK 190

>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A* Length = 195

 Score =  116 bits (292), Expect = 4e-33
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTL-RQHNLFFDTSTSFLSSQRTVLRLRR-DTR 58
           +E+E K  +    + ++  +L   F  +   +Q N +F+T  S L    + LR+R     
Sbjct: 8   IEIEFKNIV----TEEEFHALCKSFSIEVFTKQVNHYFETPNSSLKEAGSALRIRHKGET 63

Query: 59  CVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSE 118
             L LK           + E  + +    AK  +E       I S  V     +  +   
Sbjct: 64  YTLTLKQP-----AEVGLLETHQVVTENEAKMMMETN----VIISGAVMNQLCKLQIPVS 114

Query: 119 VGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENG 178
             L  +G     R    +    L  D + Y   ++YE+E E  D E  K      L ++ 
Sbjct: 115 -ALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHN 173

Query: 179 IEFEYSQMTKFAVFRAGK 196
           I   ++   K   F   K
Sbjct: 174 IPIRHTN-NKVKRFFLAK 190

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii} Length = 165

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 32/183 (17%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRC 59
           ME+E+K  +      +++  L ++F      Q +++F+  +  L      LR+R+ +   
Sbjct: 1   MEIEVKFRVNFEDIKRKIEGLGAKF-FGIEEQEDVYFELPSPKL------LRVRKINNTG 53

Query: 60  VLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
              +  K  L        E E E         +++P    E+  R+              
Sbjct: 54  KSYITYKEILDKRNEEFYELEFE---------VQDPEGAIELFKRL-------------- 90

Query: 120 GLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGI 179
           G    G  +  R +Y+ N++  E++  +   G+  ++E  +S+PE  KK++       G+
Sbjct: 91  GFKVQGVVKKRRWIYKLNNVTFELNRVE-KAGDFLDIEVITSNPEEGKKIIWDVARRLGL 149

Query: 180 EFE 182
           + E
Sbjct: 150 KEE 152

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2 Length = 179

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 32/182 (17%)

Query: 2   EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTRCV 60
           EVE+K  +K       L +   +F  +   Q +++F+           +LR+R       
Sbjct: 10  EVEIKFKIKLEDFLHTLNTFNPEF-VRYEEQEDVYFEVPR------PKLLRIRGVHNLKK 62

Query: 61  LCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVG 120
             L  K  L        E E E         I +  K  E+  R+              G
Sbjct: 63  YYLTFKEILDENNEEFYEVEFE---------IGDFEKAVEVFKRL--------------G 99

Query: 121 LVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIE 180
                  +  R VY+ N + LEV+  +   G+  ++E  S  PE  K+ +       G++
Sbjct: 100 FKIQATIKKKRWVYKLNGVTLEVNRVE-GIGDFVDIEVISDSPEEAKEKIWEVAKMLGLK 158

Query: 181 FE 182
            E
Sbjct: 159 EE 160

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2 Length = 189

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 35/174 (20%)

Query: 2   EVELKLCLKSAAS-HKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR---DT 57
           EVELK  +K+  +    +  +  +   +  ++ + F+DT    L+ Q   L LR      
Sbjct: 12  EVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAG 71

Query: 58  RCVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGS 117
             +  +K            E D  E         I        +                
Sbjct: 72  IKLWIVKGP----------EADRCE------ATNITKLDSAQSMLEN------------- 102

Query: 118 EVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLE 171
            +G   +   + +R ++      + +D     FG+  E    + D   + +  E
Sbjct: 103 -MGYEVIQCSKKIRSIFFVGEFHITLDFLD-GFGHFAEFAIMTDDETALARYRE 154

>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A Length = 234

 Score = 44.4 bits (104), Expect = 6e-06
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 19/179 (10%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCV 60
           +EVE K         ++ +  L       +   + ++DT    L      LR R D+   
Sbjct: 25  IEVERKF--LPGPGTEERLQELGGTLEYRVTFRDTYYDTPELSLMQADHWLRRREDSGWE 82

Query: 61  LCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVG 120
           L       ++   +  +E   E   +VA+ C    +        V   +          G
Sbjct: 83  LKCPGAAGVLGPHTEYKELTAEPT-IVAQLCKVLRADGLGAG-DVAAVLGPL-------G 133

Query: 121 LVCLGGFENLRQVY-------EWNSLILEVDETKYDFGNNY-EVECESSDPEGVKKLLE 171
           L  +  F   R  +       +     L VD    DFG    EVE    +   V   LE
Sbjct: 134 LQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTADFGYAVGEVEALVHEEAEVPTALE 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3v85_A	210	CYTH-like phosphatase; CYTH domain, hydrolase; HET	100.0
3tj7_A	195	GBAA_1210 protein; structural genomics, adenosine	100.0
2gfg_A	193	BH2851; antiparallel barrel, structural genomics,	100.0
3bhd_A	234	Thtpase, thiamine triphosphatase; hydrolase, struc	99.96
2een_A	183	Hypothetical protein PH1819; dimer, NPPSFA, nation	99.95
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	99.94
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	99.93
3n10_A	179	Adenylate cyclase 2; CYTH domain, antiparallel bar	99.92
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	99.91
1yem_A	179	Hypothetical protein; structural genomics, southea	99.87
2fbl_A	153	Hypothetical protein NE1496; APC5855, PSI, protein	99.19
3g3t_A	295	Vacuolar transporter chaperone 4; polyphosphate po	98.34
3g3o_A	392	Vacuolar transporter chaperone 2; polyphosphate po	96.16

>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=6.3e-42  Score=277.83  Aligned_cols=198  Identities=61%  Similarity=1.019  Sum_probs=168.0

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCC-----------EEEEEEecCCc
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDT-----------RCVLCLKSKPS   68 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~-----------~~~~TlK~~~~   68 (198)
                      ||||+||++.+++.++++...++.....+.+|+|+||||||++|++++++|||| .|+           +|+||||+|+.
T Consensus         1 iEiE~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~   80 (210)
T 3v85_A            1 MEVEVKLRLLTAAAHLRLTTLLTPYHLKTLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPT   80 (210)
T ss_dssp             CEEEEEEEECSHHHHHHHHHHTGGGEEEEEEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEE
T ss_pred             CeEEEEecCCCHHHHHHHHHhccccccceEEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCc
Confidence            899999977789999999988765455678899999999999999999999999 443           68899999999


Q ss_pred             cccCccceeeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceec
Q 029129           69 LVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKY  148 (198)
Q Consensus        69 ~~~g~~~~~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~  148 (198)
                      ..+|++++.||+.+++...+...+..+..........+...+...++.....+.++++++|.|.+|.+++|+|+||++.|
T Consensus        81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~  160 (210)
T 3v85_A           81 LANGISRVEEDEEEIEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKY  160 (210)
T ss_dssp             EETTEEEEEEEEEEECHHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCceeEEEEeecCChhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeee
Confidence            88889888899999998776655544221111113455556565666344678999999999999999999999999999


Q ss_pred             CCCceEEEEEeeCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhhcCCCC
Q 029129          149 DFGNNYEVECESSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKLP  198 (198)
Q Consensus       149 ~~~~~~EiE~E~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~~~~  198 (198)
                      .++.+||||+|+.+++.++..|..+|+++||++++|..||++|||.|++|
T Consensus       161 ~~g~~~ELEle~~d~e~~~~~~~~lL~~~gI~~~~s~~sK~arf~~~klp  210 (210)
T 3v85_A          161 DFGNCYEIECETEEPERVKTMIEEFLTEEKIEFSNSDMTKFAVFRSGKLP  210 (210)
T ss_dssp             TTEEEEEEEEECSCHHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTSCC
T ss_pred             CCcEEEEEEEEeCCHHHHHHHHHHHHHHcCCCcCcCcccHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999999999998

>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*

Probab=100.00  E-value=1.8e-41  Score=272.68  Aligned_cols=182  Identities=23%  Similarity=0.298  Sum_probs=152.6

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      +|||+|| +++++.+.+++.++.  ...+.+|.|+||||||++|++++++|||| .|++|+||||+|+..  |   +.||
T Consensus         8 ~EiE~K~-~l~~~~~~~l~~~l~--~~~~~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~TlK~~~~~--g---~~E~   79 (195)
T 3tj7_A            8 IEIEFKN-IVTEEEFHALCKSFS--IEVFTKQVNHYFETPNSSLKEAGSALRIRHKGETYTLTLKQPAEV--G---LLET   79 (195)
T ss_dssp             EEEEEEE-EECHHHHHHHHHHTT--CCCCEEEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS--S---EEEE
T ss_pred             ceEEEEE-ecCHHHHHHHHHhcC--CCceEEEEEEEEeCCcHhHHhCCCEEEEEeECCeEEEEEeeCCCC--C---ceEE
Confidence            5999999 999999999999864  34578999999999999999999999999 899999999999874  3   3499


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE  159 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E  159 (198)
                      +.+++.++++.++.. +.+|.  +.+. .++..+|+ ....|+++++++|.|+++.+.+|+||||++.|++..+||||+|
T Consensus        80 ~~~l~~~ea~~~l~~-~~~p~--~~i~-~~l~~~g~-~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E  154 (195)
T 3tj7_A           80 HQVVTENEAKMMMET-NVIIS--GAVM-NQLCKLQI-PVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFE  154 (195)
T ss_dssp             EEEECHHHHHHHHHS-SCCCS--SHHH-HHHHHHTC-CGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEE
T ss_pred             EeeCCHHHHHHHhhc-CCCCh--HHHH-HHHHHcCC-CccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEE
Confidence            999999999999987 55774  3444 45578999 7778999999999999999999999999999999889999999


Q ss_pred             eCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhhcCC
Q 029129          160 SSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGK  196 (198)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~~  196 (198)
                      +.+++.+++.|..+|+++||+++++. ||++||+..+
T Consensus       155 ~~d~~~~~~~~~~lL~~~gi~~~~~~-sKi~R~~~~~  190 (195)
T 3tj7_A          155 VQDEETGKAAFIHLLKQHNIPIRHTN-NKVKRFFLAK  190 (195)
T ss_dssp             ESCHHHHHHHHHHHHHHTTCCCCC-------------
T ss_pred             eCCHHHHHHHHHHHHHHCCCCcCCCC-CHHHHHHHHH
Confidence            99999999999999999999999865 9999999865

>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}

Probab=100.00  E-value=1.9e-41  Score=272.17  Aligned_cols=184  Identities=24%  Similarity=0.279  Sum_probs=159.1

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      +|||+|| +++++.+.++...+.........|.|+||||||++|++++++|||| .|++|+||||+|+..  |   +.||
T Consensus         6 ~EIE~K~-~v~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~--g---R~E~   79 (193)
T 2gfg_A            6 IEIERKT-LVSKETFKRLISQLHIGEGDFKLQRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPA--G---LLET   79 (193)
T ss_dssp             EEEEEEE-EECHHHHHHHHHHTTCCGGGCEEEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS--S---EEEE
T ss_pred             eEEEEec-cCCHHHHHHHHHHhhhcCCCceeeEEEeeeCCCHHHHhCCCEEEEEeeCCcEEEEEccCCCC--C---CceE
Confidence            4999999 8999999999998754322344599999999999999999999999 999999999999873  3   4599


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEEe
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECE  159 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~E  159 (198)
                      |.+|+.++++.++.. +.+|.   +.+..++..+++ ....|.|++.++|.|++|.+++|++|||++.|.+.++||||+|
T Consensus        80 e~~l~~~~~~~~l~~-~~~p~---~~~~~~l~~~~~-~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~E  154 (193)
T 2gfg_A           80 NQTLSKQEAKLALES-AHFPS---GEVMDALRDLSI-PISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFE  154 (193)
T ss_dssp             EEEECHHHHHHHHHH-CCCCC---SHHHHHHHHTTC-CGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCchhhhhhccc-ccCCc---HHHHHHHHHhcC-CccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEE
Confidence            999999888888765 55663   455666677888 6678999999999999999999999999999987779999999


Q ss_pred             eCChhhHHHHHHHHHHhcCCCCcccCCCHHHHhhcCC
Q 029129          160 SSDPEGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGK  196 (198)
Q Consensus       160 ~~~~~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~~  196 (198)
                      +++++.++..|..+++++||+.+++ .||++||+..+
T Consensus       155 l~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~~~~~  190 (193)
T 2gfg_A          155 GTSEEHATVTFQEILKTFSISQVPT-ENKIQRFFSKK  190 (193)
T ss_dssp             ESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHHHHHH
T ss_pred             ECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHHHHHh
Confidence            9999888899999999999999887 79999998643

>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A

Probab=99.96  E-value=7.4e-29  Score=204.31  Aligned_cols=177  Identities=19%  Similarity=0.174  Sum_probs=127.3

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCc-cceee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGV-SRVEE   78 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~-~~~~E   78 (198)
                      +|||+|| .++++.+.+|..... ....+..|.|+||||||++|++++++|||| .| .  +|+|.|+..  |. +.+.|
T Consensus        25 ~EIElK~-~v~~~~~~~L~~~~~-~~~~~~~q~n~YfDTpd~~L~~~~~aLRiR~~~-~--~tlK~p~~~--g~~~~~~e   97 (234)
T 3bhd_A           25 IEVERKF-LPGPGTEERLQELGG-TLEYRVTFRDTYYDTPELSLMQADHWLRRREDS-G--WELKCPGAA--GVLGPHTE   97 (234)
T ss_dssp             EEEEEEE-CCCTTHHHHHHHTTC-EEEEEEEEEEEEEECTTCHHHHTTCEEEEETTT-E--EEEEEESSB--TTBCTTSE
T ss_pred             EEEEEee-cCCHHHHHHHHhCCC-CCCCcceEEEEEeeCCChHHHhCCcEEEEECCC-C--eEEecCCcc--CccCCcce
Confidence            4999999 777777776665532 223467899999999999999999999999 54 3  779999875  32 22347


Q ss_pred             eeecCCHHHHH-----hhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEE--------C-CEEEEec
Q 029129           79 DEEELDPVVAK-----ECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEW--------N-SLILEVD  144 (198)
Q Consensus        79 ~e~~l~~~~~~-----~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~--------~-~~~l~lD  144 (198)
                      |+ ++..+..+     ..+..  .+|.  .+.+..++...+      |.|++.++|.|..|.+        + +++|+||
T Consensus        98 y~-e~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~L~~~~------l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD  166 (234)
T 3bhd_A           98 YK-ELTAEPTIVAQLCKVLRA--DGLG--AGDVAAVLGPLG------LQEVASFVTKRSAWKLVLLGADEEEPQLRVDLD  166 (234)
T ss_dssp             EE-EECSHHHHHHHHHHHHTC-----C--CSSHHHHHHHHT------CEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEE
T ss_pred             ec-cccCccchhhhhhhhhcC--Cccc--hhHHHHHHhcCC------CEEEEEEEEEEEEEEEcccCCccCCCeEEEEEe
Confidence            76 55432111     11211  1111  123444444333      5899999999999999        7 7899999


Q ss_pred             ceecCCCceEEEEEeeCCh---hhHHHHHHHHHHhcCCCCcccCCCHHHHhhcCC
Q 029129          145 ETKYDFGNNYEVECESSDP---EGVKKLLEGFLNENGIEFEYSQMTKFAVFRAGK  196 (198)
Q Consensus       145 ~~~~~~~~~~EiE~E~~~~---~~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~~  196 (198)
                      .+. .+.++||||+|++++   +.+.+.+..+++++||+......||++||+..+
T Consensus       167 ~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~~~~~k~~~~l~~~  220 (234)
T 3bhd_A          167 TAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQETAPAKLIVYLQRF  220 (234)
T ss_dssp             EET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTCCCCCHHHHHHHHH
T ss_pred             ccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccccchHHHHHHHHHh
Confidence            998 444599999999965   346788899999999998666789999998754

>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}

Probab=99.95  E-value=6.9e-27  Score=185.53  Aligned_cols=150  Identities=19%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             CeeeeecCCCCHHH-HHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe----c-CCEEEEEEecCCccccCcc
Q 029129            1 MEVELKLCLKSAAS-HKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR----R-DTRCVLCLKSKPSLVNGVS   74 (198)
Q Consensus         1 ~EiE~K~~l~~~~~-~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR----~-~~~~~~TlK~~~~~~~g~~   74 (198)
                      ||||+|+ .+ ++. ..+|..  ......+..|+|+||||||++|++++++||||    . |++|++|+|+|+. .+|++
T Consensus         2 ~EiElK~-~v-~~~~~~~L~~--~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~-~~~~~   76 (183)
T 2een_A            2 YEVELKG-YA-NDEIFEKVRE--TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKI-DEKSK   76 (183)
T ss_dssp             CEEEEEE-EC-CHHHHHHHHT--TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEEC-CTTSC
T ss_pred             eEEEEEE-Ee-CHHHHHHHHh--cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcC-CCCce
Confidence            6999999 55 444 444444  32334467899999999999999999999999    2 5789999999855 34666


Q ss_pred             ceeeeeecCC-HHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC-CEEEEecceecCCCc
Q 029129           75 RVEEDEEELD-PVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN-SLILEVDETKYDFGN  152 (198)
Q Consensus        75 ~~~E~e~~l~-~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~-~~~l~lD~~~~~~~~  152 (198)
                      .+.||+.+|+ +.                 ..+..++..+|+      .+++.+++.|..|.++ +++|+||.+.+. |.
T Consensus        77 ~r~E~e~~v~~~~-----------------~~~~~~L~~lgl------~~~~~~~k~R~~~~~~~~~~v~lD~~~~l-g~  132 (183)
T 2een_A           77 TRLEIEVEIQEDV-----------------DKYFELLDRLGF------KEVLKVVKTREKYYVEKGVTITLDEVEGL-GK  132 (183)
T ss_dssp             CEEEEEEEECSCH-----------------HHHHHHHHHTTC------EEEEEEEEEEEEEEEETTEEEEEEEETTT-EE
T ss_pred             eEEEEEEeecCCH-----------------HHHHHHHHHCCC------eEEEEEEEEEEEEEeCCCEEEEEEeecCC-ee
Confidence            6779999885 32                 233445554565      6888999999999998 999999998754 45


Q ss_pred             eEEEEEeeCCh---hhHHHHHHHHHHhcCC
Q 029129          153 NYEVECESSDP---EGVKKLLEGFLNENGI  179 (198)
Q Consensus       153 ~~EiE~E~~~~---~~~~~~~~~~l~~~~i  179 (198)
                      +.|||+|++++   +.+.+.+..+++++||
T Consensus       133 f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi  162 (183)
T 2een_A          133 FIEIETLVKEKDEIPEAVEKLEKILRELGV  162 (183)
T ss_dssp             EEEEEEECSSGGGHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEecCCcccHHHHHHHHHHHHHHcCC
Confidence            67999999854   4578899999999999

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.5e-25  Score=175.03  Aligned_cols=149  Identities=21%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-c--CCEEEEEEecCCccccCcccee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-R--DTRCVLCLKSKPSLVNGVSRVE   77 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~--~~~~~~TlK~~~~~~~g~~~~~   77 (198)
                      ||||+|| +++.+.+.+.+..++.....+..|+|+|||||++      ++|||| .  |++|++|+|+|+ . ++...+.
T Consensus         1 ~EIE~K~-~v~~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~-g~~~~~~   71 (165)
T 2dc4_A            1 MEIEVKF-RVNFEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-D-KRNEEFY   71 (165)
T ss_dssp             CEEEEEE-ECCHHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-S-SSSCEEE
T ss_pred             CeEEEEE-EECHHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-C-CCceeee
Confidence            7999999 7888888877766543233467899999999987      899999 3  899999999998 3 3444555


Q ss_pred             eeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEE
Q 029129           78 EDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVE  157 (198)
Q Consensus        78 E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE  157 (198)
                      ||+.++++.                 ..+..++..+|+      .+.+.+++.|..|.+++++++||.+.+. |.+.|||
T Consensus        72 E~e~~i~~~-----------------~~~~~~L~~lg~------~~~~~~~k~R~~~~~~~~~i~lD~~~~~-g~~~EiE  127 (165)
T 2dc4_A           72 ELEFEVQDP-----------------EGAIELFKRLGF------KVQGVVKKRRWIYKLNNVTFELNRVEKA-GDFLDIE  127 (165)
T ss_dssp             EEEEEBSCH-----------------HHHHHHHHHTTC------CEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEE
T ss_pred             EEEEEcCCH-----------------HHHHHHHHHcCC------cEEEEEEEEEEEEEECCEEEEEEecCCC-ccEEEEE
Confidence            999888432                 123344454566      4677789999999999999999999865 4677999


Q ss_pred             EeeCChhhHHHHHHHHHHhcCCCCc
Q 029129          158 CESSDPEGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       158 ~E~~~~~~~~~~~~~~l~~~~i~~~  182 (198)
                      +++.+.+.+++.+..+++++||+..
T Consensus       128 ~~~~~~~~~~~~~~~l~~~lgi~~~  152 (165)
T 2dc4_A          128 VITSNPEEGKKIIWDVARRLGLKEE  152 (165)
T ss_dssp             ECCSCHHHHHHHHHHHHHHTTCCGG
T ss_pred             EEcCCHHHHHHHHHHHHHHcCCCcc
Confidence            9998888889999999999999876

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2

Probab=99.93  E-value=6.5e-25  Score=175.28  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=116.3

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhcc-ccCcceEeeeeeecCCChhHHhCCCEEEEe-c-C-CEEEEEEecCCccccCccce
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQ-FHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-R-D-TRCVLCLKSKPSLVNGVSRV   76 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~-~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~-~-~~~~~TlK~~~~~~~g~~~~   76 (198)
                      +|||+|+++.+.+.+.+++..++. ....+..|.|+|||||+++|++++++|||| . + +.+++|+|+|..+  |.  .
T Consensus        11 ~EiElK~~v~d~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~--~~--~   86 (189)
T 2aca_A           11 FEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEAD--RC--E   86 (189)
T ss_dssp             EEEEEEEEESCHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTT--BE--E
T ss_pred             EEEEEEEecCCHHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcC--ce--E
Confidence            599999943357777777666543 223567899999999999999999999999 3 2 4689999988763  43  1


Q ss_pred             eeeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEE
Q 029129           77 EEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEV  156 (198)
Q Consensus        77 ~E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~Ei  156 (198)
                       |  .+++         +        ...+..++..+|+      .+++.+++.|..|.+++++|+||.+.+. |.++||
T Consensus        87 -e--~~v~---------d--------~~~~~~~L~~lgl------~~~~~~~k~R~~~~~~~~~v~lD~~~~l-g~f~Ei  139 (189)
T 2aca_A           87 -A--TNIT---------K--------LDSAQSMLENMGY------EVIQCSKKIRSIFFVGEFHITLDFLDGF-GHFAEF  139 (189)
T ss_dssp             -E--EEBS---------C--------HHHHHHHHHHTTC------EEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEE
T ss_pred             -E--EecC---------C--------HHHHHHHHHHcCC------cEEEEEEEEEEEEEECCEEEEEEcccCC-eeEEEE
Confidence             3  3332         1        1344555555666      6888999999999999999999999854 577899


Q ss_pred             EEeeCC---hhhHHHHHHHHHHhcCCCCc
Q 029129          157 ECESSD---PEGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       157 E~E~~~---~~~~~~~~~~~l~~~~i~~~  182 (198)
                      |+|+++   ++.+.+.+..+++++||+..
T Consensus       140 E~e~~~~~~~~~~~~~~~~l~~~lgi~~~  168 (189)
T 2aca_A          140 AIMTDDETALARYRERLVALAQQFHLSEA  168 (189)
T ss_dssp             EEEESCSGGGTTHHHHHHHHHHHTTCCGG
T ss_pred             EEEcCCccchHHHHHHHHHHHHHcCcCcc
Confidence            999985   44678899999999999875

>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A

Probab=99.92  E-value=1.7e-23  Score=165.32  Aligned_cols=151  Identities=18%  Similarity=0.212  Sum_probs=112.8

Q ss_pred             eeeeecCCCCHHHHHHHHHHhcc-ccCcceEeeeeeecCCChhHHhCCCEEEEe-c--CCEEEEEEecCCccccCcccee
Q 029129            2 EVELKLCLKSAASHKQLISLLSQ-FHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-R--DTRCVLCLKSKPSLVNGVSRVE   77 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~~~~-~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~--~~~~~~TlK~~~~~~~g~~~~~   77 (198)
                      |||+||++.+.+.+...+..+.. .......|.|+|||||+++|++++++|||| .  +..+++|+|+|..       +.
T Consensus        10 EiE~K~~v~d~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~-------~~   82 (179)
T 3n10_A           10 EVELKFRVMDLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGA-------ER   82 (179)
T ss_dssp             EEEEEEEESCHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSS-------SB
T ss_pred             EEEEEEEcCCHHHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcc-------cc
Confidence            99999955566665444433322 234467899999999999999999999999 4  3456666665533       34


Q ss_pred             eeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEE
Q 029129           78 EDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVE  157 (198)
Q Consensus        78 E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE  157 (198)
                      |++.+++..                 ..+..++..+|+      .+++.+.+.|..|.+++++|+||.+... |.++|||
T Consensus        83 e~e~~v~~~-----------------~~~~~~l~~lg~------~~~~~~~k~R~~~~~~~~~v~lD~v~~l-G~f~EiE  138 (179)
T 3n10_A           83 CEASNIEDV-----------------SKVQSMLATLGY------HPAFTIEKQRSIYFVGKFHITVDHLTGL-GDFAEIA  138 (179)
T ss_dssp             EEEEECSCH-----------------HHHHHHHHHTTC------EEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEE
T ss_pred             ceeeccCCH-----------------HHHHHHHHhCCC------eEEEEEEEEEEEEEECCEEEEEEeccCC-CcEEEEE
Confidence            888877532                 233344443454      7899999999999999999999998854 5899999


Q ss_pred             EeeCChh---hHHHHHHHHHHhcCCCCcc
Q 029129          158 CESSDPE---GVKKLLEGFLNENGIEFEY  183 (198)
Q Consensus       158 ~E~~~~~---~~~~~~~~~l~~~~i~~~~  183 (198)
                      +|++++.   .+.+.+..+++++||+...
T Consensus       139 ~e~~~~~~~~~~~~~~~~l~~~LGl~~~~  167 (179)
T 3n10_A          139 IMTDDATELDKLKAECRDFANTFGLQVDQ  167 (179)
T ss_dssp             EEESCGGGHHHHHHHHHHHHHHHTCCGGG
T ss_pred             EEeCCCccHHHHHHHHHHHHHHcCcChhh
Confidence            9998863   5678899999999998654

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2

Probab=99.87  E-value=3.5e-21  Score=152.46  Aligned_cols=147  Identities=21%  Similarity=0.249  Sum_probs=116.4

Q ss_pred             eeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-c--CCEEEEEEecCCccccCcc-cee
Q 029129            2 EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-R--DTRCVLCLKSKPSLVNGVS-RVE   77 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~--~~~~~~TlK~~~~~~~g~~-~~~   77 (198)
                      |++.++ -++.+.+...+..++........|.|+|||||++      .+|||| .  |+++++|+|+|. .  |.. .+.
T Consensus        10 ~~~~~~-~vd~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~--g~~k~~~   79 (179)
T 1yem_A           10 EVEIKF-KIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-D--ENNEEFY   79 (179)
T ss_dssp             EEEEEE-EECHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-S--SSSCEEE
T ss_pred             ceeeeE-ecCHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-C--CCcccee
Confidence            788898 4588887766666554344567899999999987      799999 4  889999999998 3  543 344


Q ss_pred             eeeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEE
Q 029129           78 EDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVE  157 (198)
Q Consensus        78 E~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE  157 (198)
                      |++.+|+..                 +.+..++..+|+      .+++.++|.|.+|.++++.++||.+.+. |.+.|||
T Consensus        80 E~e~~v~d~-----------------~~~~~iL~~LG~------~~~~~i~K~R~~~~~~~~~i~lD~~~~l-G~f~EIE  135 (179)
T 1yem_A           80 EVEFEIGDF-----------------EKAVEVFKRLGF------KIQATIKKKRWVYKLNGVTLEVNRVEGI-GDFVDIE  135 (179)
T ss_dssp             EEEEEESCH-----------------HHHHHHHHHTTC------CEEEEEEEEEEEEEETTEEEEEEEETTT-EEEEEEE
T ss_pred             EEEEEeCCH-----------------HHHHHHHHHCCC------cEEEEEEEEEEEEEECCEEEEEEecCCC-CCEEEEE
Confidence            777766321                 234455666677      3678899999999999999999999865 4667999


Q ss_pred             EeeCChhhHHHHHHHHHHhcCCCCc
Q 029129          158 CESSDPEGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       158 ~E~~~~~~~~~~~~~~l~~~~i~~~  182 (198)
                      +++.+.+.+++.+..+++++||+..
T Consensus       136 ~~~~~~e~~~~~~~~ll~~LGi~~~  160 (179)
T 1yem_A          136 VISDSPEEAKEKIWEVAKMLGLKEE  160 (179)
T ss_dssp             EECSCHHHHHHHHHHHHHHTTCCGG
T ss_pred             EecCChHHHHHHHHHHHHHcCCChh
Confidence            9998888889999999999999876

>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2

Probab=99.19  E-value=1.4e-10  Score=89.18  Aligned_cols=117  Identities=24%  Similarity=0.254  Sum_probs=76.1

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCE-EEEe-cCCEEEEEEecCCccccCccceee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTV-LRLR-RDTRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~-LRiR-~~~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      ||||.|| ++....       ..  ......+...|+.++      .+.+ +||| .|+++.+|+|++.    |++|. |
T Consensus         4 ~EIERKF-LV~~~~-------~~--~~~~~~i~QgYl~~~------~~~~~vRvR~~g~~~~lT~Kg~~----g~~R~-E   62 (153)
T 2fbl_A            4 TEIERKF-LVATFP-------DG--ELHAVPLRQGYLTTP------TDSIELRLRQQGTEYFMTLKSEG----GLSRQ-E   62 (153)
T ss_dssp             CCEEEEE-EESSCC-------CS--CCEEEEEEEEESSCT------TSSSEEEEEEETTEEEEEEEC----------C-E
T ss_pred             eEEEEEE-EEcCCC-------cc--cCCCeEEEEEEecCC------CCceEEEEEEeCCEEEEEEEcCC----CceeE-E
Confidence            6999999 875333       11  123455677999877      2455 9999 9999999999886    56555 9


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECC-EEEEecceecCCCceEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNS-LILEVDETKYDFGNNYEVE  157 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~-~~l~lD~~~~~~~~~~EiE  157 (198)
                      +|.+|+.++++.++.. .              .  +.          ...+.|..+.+++ ..+.||.-....+..+=+|
T Consensus        63 ~E~~I~~~~~~~ll~~-~--------------~--~~----------~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aE  115 (153)
T 2fbl_A           63 YEIQIDVTQFEMLWPA-T--------------E--GR----------RVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVE  115 (153)
T ss_dssp             EEEEECHHHHHHHGGG-G--------------T--TS----------EEEEEEEEEECTTCCEEEEEEECGGGTTCEEEE
T ss_pred             EEEECCHHHHHHHHhh-C--------------C--CC----------EEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEE
Confidence            9999998887766643 0              0  11          1567899999988 7999998643222234455


Q ss_pred             EeeCChhh
Q 029129          158 CESSDPEG  165 (198)
Q Consensus       158 ~E~~~~~~  165 (198)
                      +|+.+.+.
T Consensus       116 vE~~~e~e  123 (153)
T 2fbl_A          116 VEFLSEDA  123 (153)
T ss_dssp             EEESSHHH
T ss_pred             EEecCccc
Confidence            55555443

>3g3t_A Vacuolar transporter chaperone 4; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3g3q_A* 3g3r_A 3g3u_A

Probab=98.34  E-value=7.9e-06  Score=68.92  Aligned_cols=89  Identities=11%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             eeeecCCCCHHHHHHHHHHhccc-----c--C-----cceEeeeeeecCCChhHHh-------CCCEEEEe-cC----CE
Q 029129            3 VELKLCLKSAASHKQLISLLSQF-----H--T-----KTLRQHNLFFDTSTSFLSS-------QRTVLRLR-RD----TR   58 (198)
Q Consensus         3 iE~K~~l~~~~~~~~l~~~~~~~-----~--~-----~~~~~~n~YfDTpd~~L~~-------~~~~LRiR-~~----~~   58 (198)
                      +|.|| +++++++..|...+...     .  .     .....+|+|||||+++|-.       ....|||| .|    +.
T Consensus        12 ~e~KY-~v~~~~~~~lk~~l~~~l~vl~~~~~~~~~~~~~~I~SlYFDt~~~~ly~~~l~k~~~r~KlRlR~Yg~~~~~~   90 (295)
T 3g3t_A           12 QTTKY-WVHPDNITELKLIILKHLPVLVFNTNKEFEREDSAITSIYFDNENLDLYYGRLRKDEGAEAHRLRWYGGMSTDT   90 (295)
T ss_dssp             EEEEE-EECGGGHHHHHHHHHTTSCBC--------CGGGGEEEEEEEECTTCHHHHHHHTTCTTCEEEEEEEESSTTCCE
T ss_pred             EEEEE-EEcHHHHHHHHHHHHHhCCccccCCccccCCCCceEEEEEecCCCHHHHHHHhcCCCCCcEEEEEEcCCCCCCc
Confidence            69999 99999998888764321     0  1     2236799999999999985       34499999 33    78


Q ss_pred             EEEEEecCCccc-cCccceeeeeecCCHHHHHhhhcC
Q 029129           59 CVLCLKSKPSLV-NGVSRVEEDEEELDPVVAKECIEN   94 (198)
Q Consensus        59 ~~~TlK~~~~~~-~g~~~~~E~e~~l~~~~~~~~l~~   94 (198)
                      ..+.+|....+. +|.  ..+...+++..++..++..
T Consensus        91 ifLE~K~k~~~~~~~~--~~K~R~~l~~~~~~~~l~g  125 (295)
T 3g3t_A           91 IFVERKTHREDWTGEK--SVKARFALKERHVNDFLKG  125 (295)
T ss_dssp             EEEEEEECCCGGGTCC--CEEEEEEEEGGGHHHHHHT
T ss_pred             EEEEEEEecCCCCCCc--eEEEEEeeCHHHHHHHHcC
Confidence            899999987432 243  2356678887777777754

>3g3o_A Vacuolar transporter chaperone 2; polyphosphate polymerase, polyphosphate kinase, VTC complex, tunnel enzyme, membrane, phosphoprotein; 2.10A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.01  Score=51.47  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             EeeeeeecCCChhHHhC-------CCEEEEe-cC-----CEEEEEEecCCcc-ccCccceeeeeecCCHHHHHhhhcC
Q 029129           31 RQHNLFFDTSTSFLSSQ-------RTVLRLR-RD-----TRCVLCLKSKPSL-VNGVSRVEEDEEELDPVVAKECIEN   94 (198)
Q Consensus        31 ~~~n~YfDTpd~~L~~~-------~~~LRiR-~~-----~~~~~TlK~~~~~-~~g~~~~~E~e~~l~~~~~~~~l~~   94 (198)
                      ..+|.|||||+++|-..       ...|||| .|     ....+.+|..... ..|-....+...+++..++..+|..
T Consensus       116 tI~SLYFDt~d~~lY~~kl~k~~~r~KlRlRwYg~~~d~~~IFLE~K~K~~~~~tg~~v~~KrR~~Lk~k~v~~fL~g  193 (392)
T 3g3o_A          116 LINTLYFDNEHFELYNDKLLKLNSAPTLRLRWTGQLSDKPDIFLEKKTLIEDEATGKSEFDLTKLQLKQKFINGFIFE  193 (392)
T ss_dssp             CEEEEEEECTTCHHHHHHHHTCTTCCEEEEEEESCGGGCCCEEEEEEEEC-------CCEEEEEEEECGGGHHHHHHS
T ss_pred             cEEEEEecCCCHHHHHHHhcCCCCCcEEEEEEeCCCCCCCCEEEEEEEecCCCcccccceeEEEeeeCHHHHHHHHhC
Confidence            56899999999998754       4499999 43     5788999987653 1121110366788888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2jmua1	223	d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPas	8e-13
d2acaa1	174	d.63.1.2 (A:8-181) Putative adenylate cyclase VP17	1e-10
d1yema_	163	d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococ	6e-09

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]} Length = 223

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (151), Expect = 8e-13
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 1   MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCV 60
           +EVE K       + ++L  L +      +   + ++DTS   L      LR R  +   
Sbjct: 5   IEVERKFAP-GPDTEERLQELGATLE-HRVTFRDTYYDTSELSLMLSDHWLRQREGSGWE 62

Query: 61  LCLKSKPSLVNGVSRVEEDEEELDPV-VAKECIENPSKLFEIESRVVRRVREEFGVGSEV 119
           L       +    +   E   E   V    E + +  +     + V+            +
Sbjct: 63  LKCPGVTGVSGPHNEYVEVTSEAAIVAQLFELLGSGEQKPAGVAAVLG----------SL 112

Query: 120 GLVCLGGFENLRQVY---------EWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLL 170
            L  +  F   R  +         +   L +++D   +      EVE    +   V   L
Sbjct: 113 KLQEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADFG-YAVGEVEAMVHEKAEVPAAL 171

Query: 171 E---GFLNENGIEFEYSQMTKFAVFRAGKLP 198
           E      +  G+  +     K  V+     P
Sbjct: 172 EKIITVSSMLGVPAQEEAPAKLMVYLQRFRP 202

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]} Length = 174

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 24/187 (12%), Positives = 53/187 (28%), Gaps = 34/187 (18%)

Query: 1   MEVELKLCLKSAAS-HKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRR-DTR 58
            EVELK  +K+  +    +  +  +   +  ++ + F+DT    L+ Q   L LR     
Sbjct: 4   FEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPA 63

Query: 59  CVLCLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSE 118
            +     K    +                    I        +                 
Sbjct: 64  GIKLWIVKGPEADRCEATN--------------ITKLDSAQSMLEN-------------- 95

Query: 119 VGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDP---EGVKKLLEGFLN 175
           +G   +   + +R ++      + +D     FG+  E    + D       ++ L     
Sbjct: 96  MGYEVIQCSKKIRSIFFVGEFHITLDFLD-GFGHFAEFAIMTDDETALARYRERLVALAQ 154

Query: 176 ENGIEFE 182
           +  +   
Sbjct: 155 QFHLSEA 161

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]} Length = 163

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 50.9 bits (121), Expect = 6e-09
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 30/181 (16%)

Query: 2   EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVL 61
           EVE+K  +K       L +   +F  +   Q +++F+     L   R             
Sbjct: 2   EVEIKFKIKLEDFLHTLNTFNPEF-VRYEEQEDVYFEVPRPKLLRIR-----GVHNLKKY 55

Query: 62  CLKSKPSLVNGVSRVEEDEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGL 121
            L  K  L       E  E E +    ++ +E                         +G 
Sbjct: 56  YLTFKEILDENNE--EFYEVEFEIGDFEKAVEVFK---------------------RLGF 92

Query: 122 VCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVECESSDPEGVKKLLEGFLNENGIEF 181
                 +  R VY+ N + LEV+  +   G+  ++E  S  PE  K+ +       G++ 
Sbjct: 93  KIQATIKKKRWVYKLNGVTLEVNRVE-GIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKE 151

Query: 182 E 182
           E
Sbjct: 152 E 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2jmua1	223	Thiamine-triphosphatase (ThTPase) {Mouse (Mus musc	99.96
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	99.9
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	99.87
d2fbla1	150	Hypothetical protein NE1496 {Nitrosomonas europaea	98.53

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.1e-30  Score=206.74  Aligned_cols=184  Identities=16%  Similarity=0.130  Sum_probs=141.7

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEecCCEEEEEEecCCccccCccceeeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLRRDTRCVLCLKSKPSLVNGVSRVEEDE   80 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~TlK~~~~~~~g~~~~~E~e   80 (198)
                      ||||+|| .++++..++|.++.. ......+|+|+||||||++|++++++||||.++.|+||+|.++...++++.+.||+
T Consensus         5 iEVE~Kf-~~~~~~~~~l~~~~~-~~~~~~~l~d~YfDtpd~~L~~~~~aLRiR~~~~~~lt~k~~~~~~~~~~~~~E~~   82 (223)
T d2jmua1           5 IEVERKF-APGPDTEERLQELGA-TLEHRVTFRDTYYDTSELSLMLSDHWLRQREGSGWELKCPGVTGVSGPHNEYVEVT   82 (223)
T ss_dssp             EEEEEEE-EECTTHHHHHHHHTC-EEEEEEEEEEEEEECTTSHHHHTTCEEEEETTTEEEEEECSCSSCCSSCCSCEEEC
T ss_pred             EEEEEee-cCCHHHHHHHHHcCC-cccccEEEEEEEEcCCChhHHhCCceEEeEeCCCceEEEecCCCCCcceeeecccc
Confidence            6999999 777788888877632 23567889999999999999999999999988899999999988877887778999


Q ss_pred             ecCCHHHHH-hhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEEC---------CEEEEecceecCC
Q 029129           81 EELDPVVAK-ECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWN---------SLILEVDETKYDF  150 (198)
Q Consensus        81 ~~l~~~~~~-~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~---------~~~l~lD~~~~~~  150 (198)
                      .+++..... ..+.. ....   ...+..++..+++      .+++.|+|.|..|.+.         ...+++|.+.+. 
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~---~~~~~~~l~~lg~------~~~~~~~k~R~~~~l~~~~~~~~~~~~~v~lD~~~~~-  151 (223)
T d2jmua1          83 SEAAIVAQLFELLGS-GEQK---PAGVAAVLGSLKL------QEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADFG-  151 (223)
T ss_dssp             CHHHHHHHHHHHHTC-CSCC---CSSHHHHHHHHTC------EEEEEEEEEEEEEEEECCSTTSCCCEEEEEEEEETTT-
T ss_pred             ccccchhhhhhhcCc-cccc---hhHHHHHHhhcCC------eEEEEEEEEEEEEEeccCCcccccceEEEEEEcccCC-
Confidence            877533222 22222 1111   2345666665665      7899999999999882         358899998865 


Q ss_pred             CceEEEEEeeCChh---hHHHHHHHHHHhcCCCCcccCCCHHHHhhcCCC
Q 029129          151 GNNYEVECESSDPE---GVKKLLEGFLNENGIEFEYSQMTKFAVFRAGKL  197 (198)
Q Consensus       151 ~~~~EiE~E~~~~~---~~~~~~~~~l~~~~i~~~~~~~sK~~R~~~~~~  197 (198)
                      +.++|||+|++++.   ++...+..+++++||.......||.++|+.+..
T Consensus       152 ~~~~EiE~~~~~~~~~~~a~~~i~~~~~~lGl~~~~~~~skl~~~l~~~~  201 (223)
T d2jmua1         152 YAVGEVEAMVHEKAEVPAALEKIITVSSMLGVPAQEEAPAKLMVYLQRFR  201 (223)
T ss_dssp             EEEEEEEEEESCGGGHHHHHHHHHHHHHHHEEECCSSCCCHHHHHHHHHC
T ss_pred             ceEEEEEEEeCCcchHHHHHHHHHHHHHHcCCCcCcCCchHHHHHHHhcC
Confidence            47899999998753   467888888899999776656699999987643

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.90  E-value=7.8e-23  Score=158.84  Aligned_cols=153  Identities=16%  Similarity=0.194  Sum_probs=114.5

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccc-cCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQF-HTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~-~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      .|||+||++.+++.+...+..++.. ......|+|+|||||+++|.+++.+||+| .+..+.+|+|.++..   .  ..|
T Consensus         4 ~EiE~K~~~~d~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lR~R~~~~~~~~tl~~k~~~---~--~~e   78 (174)
T d2acaa1           4 FEVELKYRVKNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPE---A--DRC   78 (174)
T ss_dssp             EEEEEEEEESCHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSS---T--TBE
T ss_pred             eEEEEEEecCCHHHHHHHHHHcCCccccceEEEEEEEEECCCCchhhCceeeEEeecCCCcEEEEEEcccC---C--Cce
Confidence            3999999666777776666665432 23456889999999999999999999999 444445555544332   1  238


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      ++.+|+..                 ..+..++..+|+      .+++.+.+.|..|.+++.+||||.+.. .|+++|||+
T Consensus        79 ~e~~v~~~-----------------~~~~~il~~lg~------~~~~~~~k~R~~~~~~~~~v~lD~v~~-lg~f~EiE~  134 (174)
T d2acaa1          79 EATNITKL-----------------DSAQSMLENMGY------EVIQCSKKIRSIFFVGEFHITLDFLDG-FGHFAEFAI  134 (174)
T ss_dssp             EEEEBSCH-----------------HHHHHHHHHTTC------EEEEEEEEEEEEEEETTEEEEEEEETT-TEEEEEEEE
T ss_pred             EEEecCCH-----------------HHHHHHHHhCCC------ceEEEEEEEEEEEEECCEEEEEEEecC-CCcEEEEEE
Confidence            88777432                 234455555565      788899999999999999999999874 368999999


Q ss_pred             eeCCh---hhHHHHHHHHHHhcCCCCc
Q 029129          159 ESSDP---EGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       159 E~~~~---~~~~~~~~~~l~~~~i~~~  182 (198)
                      ++.+.   +.+.+.+..+++++||+..
T Consensus       135 ~~~~~~~~e~~~~~i~~~~~~LGi~~~  161 (174)
T d2acaa1         135 MTDDETALARYRERLVALAQQFHLSEA  161 (174)
T ss_dssp             EESCSGGGTTHHHHHHHHHHHTTCCGG
T ss_pred             EeCCccchHHHHHHHHHHHHHcCcCcc
Confidence            99764   3568899999999999864

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=2.6e-21  Score=148.84  Aligned_cols=148  Identities=22%  Similarity=0.275  Sum_probs=114.5

Q ss_pred             eeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe---cCCEEEEEEecCCccccCccceee
Q 029129            2 EVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR---RDTRCVLCLKSKPSLVNGVSRVEE   78 (198)
Q Consensus         2 EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR---~~~~~~~TlK~~~~~~~g~~~~~E   78 (198)
                      |||+|| .++.+++.+.+..++........|+|+|||+|+.+|      ||+|   .+.++.+|+|+|...  |...+.|
T Consensus         2 EvE~K~-~v~~~~~~~~L~~~ga~~~~~~~~~d~Yfd~p~~~l------lrvR~~~~~~~~~lt~K~~~~~--~~~~~~E   72 (163)
T d1yema_           2 EVEIKF-KIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKL------LRIRGVHNLKKYYLTFKEILDE--NNEEFYE   72 (163)
T ss_dssp             EEEEEE-EECHHHHHHHHHTTCCEEEEEEEEEEEEECCCTTEE------EEEEEETTTTEEEEEEEEECSS--SSCEEEE
T ss_pred             eEEEEE-EeChHHHHHHHHhcCCcccceEEEEEeEEccCChHH------hhhhhhcCCceEEEEEeCccCC--CCceEEE
Confidence            999999 568777766666655444567889999999999766      6777   567899999987542  4444569


Q ss_pred             eeecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCEEEEecceecCCCceEEEEE
Q 029129           79 DEEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSLILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        79 ~e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~~l~lD~~~~~~~~~~EiE~  158 (198)
                      |+.+|+..                 +.+..++..+|+      .+++.+.+.|..|.+++.+|++|.+. +.|.+.|||+
T Consensus        73 ~e~~v~~~-----------------~~~~~~l~~lg~------~~~~~~~K~R~~y~~~~~~i~lD~v~-~lg~f~EiE~  128 (163)
T d1yema_          73 VEFEIGDF-----------------EKAVEVFKRLGF------KIQATIKKKRWVYKLNGVTLEVNRVE-GIGDFVDIEV  128 (163)
T ss_dssp             EEEEESCH-----------------HHHHHHHHHTTC------CEEEEEEEEEEEEEETTEEEEEEEET-TTEEEEEEEE
T ss_pred             EEecccch-----------------HHHHHHHhhcCc------eEEEEEEEEEEEEEECCEEEEEEeeC-CCCcEEEEEE
Confidence            99988532                 123344455666      57788899999999999999999876 3468899999


Q ss_pred             eeCChhhHHHHHHHHHHhcCCCCc
Q 029129          159 ESSDPEGVKKLLEGFLNENGIEFE  182 (198)
Q Consensus       159 E~~~~~~~~~~~~~~l~~~~i~~~  182 (198)
                      +..+.+.+.+.+..+++++||...
T Consensus       129 ~~~~~~~~~~~i~~l~~~Lgl~~~  152 (163)
T d1yema_         129 ISDSPEEAKEKIWEVAKMLGLKEE  152 (163)
T ss_dssp             ECSCHHHHHHHHHHHHHHTTCCGG
T ss_pred             EecChHHHHHHHHHHHHHcCCCcc
Confidence            988887788999999999999764

>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein NE1496
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.53  E-value=4.7e-07  Score=67.36  Aligned_cols=117  Identities=26%  Similarity=0.252  Sum_probs=66.3

Q ss_pred             CeeeeecCCCCHHHHHHHHHHhccccCcceEeeeeeecCCChhHHhCCCEEEEe-cCCEEEEEEecCCccccCccceeee
Q 029129            1 MEVELKLCLKSAASHKQLISLLSQFHTKTLRQHNLFFDTSTSFLSSQRTVLRLR-RDTRCVLCLKSKPSLVNGVSRVEED   79 (198)
Q Consensus         1 ~EiE~K~~l~~~~~~~~l~~~~~~~~~~~~~~~n~YfDTpd~~L~~~~~~LRiR-~~~~~~~TlK~~~~~~~g~~~~~E~   79 (198)
                      .|||.|| ++..-..       .......+.|  .|+.++.     .+..+||| .|+.+.+|+|++ .   |+++. |+
T Consensus         1 ~EIERKF-LV~~~~~-------~~~~~~~I~Q--~YL~~~~-----~~~~vRiR~~~~~~~lTiK~~-~---g~~r~-E~   60 (150)
T d2fbla1           1 TEIERKF-LVATFPD-------GELHAVPLRQ--GYLTTPT-----DSIELRLRQQGTEYFMTLKSE-G---GLSRQ-EY   60 (150)
T ss_dssp             CCEEEEE-EESSCCC-------SCCEEEEEEE--EESSCTT-----SSSEEEEEEETTEEEEEEEC----------C-EE
T ss_pred             CcceeEE-EeCcCCc-------ccccCcEEEE--EEeccCC-----CcEEEEEEEcCCEEEEEEccC-C---CceeE-EE
Confidence            4999999 8752111       0111123444  8876543     34579999 899999999964 2   67666 99


Q ss_pred             eecCCHHHHHhhhcCCCCcchhhhHHHHHHHHHhCCCCccceEEEeeeEEEEEEEEECCE-EEEecceecCCCceEEEEE
Q 029129           80 EEELDPVVAKECIENPSKLFEIESRVVRRVREEFGVGSEVGLVCLGGFENLRQVYEWNSL-ILEVDETKYDFGNNYEVEC  158 (198)
Q Consensus        80 e~~l~~~~~~~~l~~~~~~p~~~~~~~~~l~~~~~~~~~~~l~~~~~~~t~R~~~~~~~~-~l~lD~~~~~~~~~~EiE~  158 (198)
                      |.+++.++++.++..                  ...       +.  ..++|..+.+.++ ...+|.=.......+=+|+
T Consensus        61 E~ei~~~~~~~L~~~------------------~~~-------~~--I~K~Ry~~~~~~~~~~evDvF~g~~~gLilaEv  113 (150)
T d2fbla1          61 EIQIDVTQFEMLWPA------------------TEG-------RR--VEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEV  113 (150)
T ss_dssp             EEEECHHHHHHHGGG------------------GTT-------SE--EEEEEEEEECTTCCEEEEEEECGGGTTCEEEEE
T ss_pred             EeeccHHHHHHHHhh------------------CCC-------cc--eEEEEEEEEeCCCeEEEEEEECCCCcceEEEEE
Confidence            999988877655432                  011       01  4578988888665 4668853211112333444


Q ss_pred             eeCChh
Q 029129          159 ESSDPE  164 (198)
Q Consensus       159 E~~~~~  164 (198)
                      |+.+.+
T Consensus       114 E~~se~  119 (150)
T d2fbla1         114 EFLSED  119 (150)
T ss_dssp             EESSHH
T ss_pred             EecCcc
Confidence            554433