Citrus Sinensis ID: 029136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHcccccccccccEHHHHHccHHccccccccccccHcHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHHHccEEccccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mchadnhsivdeteidddvkacfpcpfcyLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGlrnggsamLGKELssflgsptivrgnapeslpdpllspflcsgtlsdtkgiqkddctnkfslasdlkryppsseyKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Flexible Loop (DISEMBL)
mchadnhsivdeteidddvkACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFslasdlkryppSSEYKLLWSQLLFKKLANKisvsstmhfkidVLLVIGIYL
Low Complexity Region (SEG)
MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Disordered region (IsUnstruct)
***********ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQH*************************************************LSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIY*
Disordered Region (DISOPRED)
************TEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQ**************************************************LSPFL*********************************************************HFKIDVLLVIGIYL
Disordered Region (DISEMBL)
********IVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Disordered Region (DISPRO)
******HSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCL*****N***AM***E*SSFLGSP********ESLPDPLLSPF*C*G***************************PSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQLLFKKLANKISVSSTMHFKIDVLLVIGIYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q7XBA5	208	Protein DEHYDRATION-INDUC	yes	no	0.621	0.591	0.504	2e-28
Q5JME8	202	Protein DEHYDRATION-INDUC	no	no	0.565	0.554	0.478	1e-24
Q39083	206	Protein DEHYDRATION-INDUC	yes	no	0.585	0.563	0.387	3e-15
Q688X9	226	Protein DEHYDRATION-INDUC	no	no	0.696	0.610	0.34	3e-14
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.606	0.515	0.340	4e-14
Q9FJ17	211	Protein DEHYDRATION-INDUC	yes	no	0.575	0.540	0.377	2e-13
Q6NM26	222	Protein DEHYDRATION-INDUC	no	no	0.631	0.563	0.323	7e-13
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	0.323	0.261	0.421	6e-12
Q8VXU6	224	Protein DEHYDRATION-INDUC	no	no	0.343	0.303	0.426	3e-10
Q84J70	223	Protein DEHYDRATION-INDUC	no	no	0.575	0.511	0.351	5e-10

>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 2/125 (1%)

Query: 6   NHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA 65
           N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL KD 
Sbjct: 20  NFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDT 79

Query: 66  AEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLPDPLL 123
            EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S PDPLL
Sbjct: 80  DEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSPDPLL 139

Query: 124 SPFLC 128
           S F+C
Sbjct: 140 SQFIC 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica GN=DI19-5 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 23  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 82
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 83  CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAP--ESLPDPLLSPFLCSGTLSDTKG 137
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT  
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNS 150

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 11  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
           +E + DDD +  F CPFC    +   +C H+ +EH  E KNAVCP+C+  +G D   H  
Sbjct: 23  EEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHIT 82

Query: 71  VQHAS--SLKRRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLL 123
           + H S   L+R+RK  KSG  N   ++L KE     L   LG  +     A    PDPLL
Sbjct: 83  LHHGSLFKLQRKRKSRKSGT-NSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLL 141

Query: 124 SPFL 127
           S F+
Sbjct: 142 SSFI 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)

Query: 1   MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN 60
           + HAD   + +E ++D++V+  F CP+CY + +   +C+HL+EEH FE   A CP+C+  
Sbjct: 21  LGHADRAGM-EEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDK 79

Query: 61  LGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSA--MLGKELSS-----FLGSPTIVRGN 113
           + KD   H  VQH    K RR+ L+  +  G  A  +L ++L        LG       N
Sbjct: 80  IAKDMLNHITVQHGYLFKNRRR-LRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNN 138

Query: 114 APESL---PDPLLSPFLCSGTLSDTKGIQK 140
           +  +     DPLLS F  S   SDT+   K
Sbjct: 139 SSNTTNISADPLLSSFGLSFPTSDTEETSK 168

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 24/144 (16%)

Query: 22  CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK--R 79
            + CPFC  + +    C H+ +EH  E K+ VCP+CA  +G D   H  +QH S  K  R
Sbjct: 53  AYNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQR 112

Query: 80  RRKCLK-------------SGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPF 126
           RR+  K               LR+G        L SFLG  + V  N P + PDP LS  
Sbjct: 113 RRRVRKISSGSHSLLSLLRKDLRDG-------SLQSFLGGSSYV-SNPPAAAPDPFLSSL 164

Query: 127 LCSGTLSD-TKGIQKDDCTNKFSL 149
           +CS  +++ +K +  D   N F L
Sbjct: 165 ICSLPVAEPSKDLHSDSSDNNFLL 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 12  ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 71
           + E +DD+KA F CPFC  E +   +C H+   H  E KN VCP+C   +G D   H   
Sbjct: 32  DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITT 91

Query: 72  QHASSLK-RRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSP 125
           QH +  K +RR+ L+ G  +     L KE     L S  GS T +  +  +S  DPLLS 
Sbjct: 92  QHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDS--DPLLSS 149

Query: 126 FL 127
           F+
Sbjct: 150 FM 151

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 1   MCHADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN 60
           +  +DN    +E E +DD +  + CPFC    +   +C H+ E+H  + KN VCP+CA  
Sbjct: 22  LSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVK 81

Query: 61  LGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML---------GKELSSFLGSPTIVR 111
           +  D   H  +QHA+  K  RK  +   R G  +ML         G   S F G+   V 
Sbjct: 82  VSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVS 139

Query: 112 GNAPESLPDPLLSPFL 127
            ++     DPLLS F+
Sbjct: 140 SSSASIAADPLLSSFI 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 44/64 (68%)

Query: 11  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
           D+ E +D+V+  FPCP+CY + +   +C+HL++EH FE K   CP+C+A + KD  +H  
Sbjct: 48  DDVEPEDEVRPDFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHIT 107

Query: 71  VQHA 74
           +QH+
Sbjct: 108 LQHS 111

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 11  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
           ++ E +DD+KA F CPFC  + +   +C H+ EEH  E KN VCP+C   +G D   H  
Sbjct: 35  EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94

Query: 71  VQHASSLK 78
            QHA+  K
Sbjct: 95  TQHANFFK 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 14/128 (10%)

Query: 11  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
           +E + +++ +  F CPFC    +   +C H+ E+H  E KN VCP+CA  +G D   H  
Sbjct: 32  EEIDGEEEFREEFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHIT 91

Query: 71  VQHASSLKRRRKCLKSGLRNGGS----AMLGKEL------SSFLGSPTIVRGNAPESL-P 119
           +QHA+  K  R   K   R GGS    ++L +E       S F GS  IV  ++  ++  
Sbjct: 92  LQHANIFKMHR---KRKPRRGGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAA 148

Query: 120 DPLLSPFL 127
           DPLLS F+
Sbjct: 149 DPLLSSFI 156

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224119454	208	predicted protein [Populus trichocarpa]	0.722	0.687	0.643	2e-46
359491142	192	PREDICTED: protein DEHYDRATION-INDUCED 1	0.702	0.723	0.610	1e-40
255540495	299	conserved hypothetical protein [Ricinus	0.696	0.461	0.615	3e-40
115461655	208	Os05g0107900 [Oryza sativa Japonica Grou	0.621	0.591	0.504	1e-26
449469572	189	PREDICTED: protein DEHYDRATION-INDUCED 1	0.636	0.666	0.457	2e-25
28195116	208	unknown [Oryza sativa Indica Group] gi|1	0.621	0.591	0.496	2e-25
357126984	223	PREDICTED: protein DEHYDRATION-INDUCED 1	0.686	0.609	0.425	2e-23
238014610	208	unknown [Zea mays]	0.656	0.625	0.434	5e-23
115442503	202	Os01g0971100 [Oryza sativa Japonica Grou	0.565	0.554	0.478	5e-23
226502390	208	LOC100282272 [Zea mays] gi|195621134|gb|	0.656	0.625	0.434	5e-23

>gi|224119454|ref|XP_002318076.1| predicted protein [Populus trichocarpa] gi|222858749|gb|EEE96296.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 111/143 (77%)

Query: 3   HADNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG 62
           ++DNH  +D+++ DD+ +A FPCPFCY+EIE H+ CSHL +EHCF++KNAVCPLCAANLG
Sbjct: 25  NSDNHLAMDDSDGDDNSRAYFPCPFCYVEIEVHLFCSHLLDEHCFDLKNAVCPLCAANLG 84

Query: 63  KDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPL 122
           KDA  HF+VQHASSLK RRK  KSGL  G SAMLGK+LSSFLGS T  R N  ES PDPL
Sbjct: 85  KDAIGHFIVQHASSLKHRRKHKKSGLWTGSSAMLGKDLSSFLGSSTNSRTNTHESAPDPL 144

Query: 123 LSPFLCSGTLSDTKGIQKDDCTN 145
           LSPFL + + SD +  Q D+  N
Sbjct: 145 LSPFLGNLSRSDPRQSQHDEPFN 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491142|ref|XP_002280304.2| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Vitis vinifera] gi|297733696|emb|CBI14943.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 109/149 (73%), Gaps = 10/149 (6%)

Query: 13  TEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQ 72
           +E DDD +A FPCPFCY++IE  ++CSHLQEEHCF++KNAVCPLCAANLGKD   HF +Q
Sbjct: 25  SEGDDDARAYFPCPFCYVDIEIPVLCSHLQEEHCFDLKNAVCPLCAANLGKDVIGHFTLQ 84

Query: 73  HASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTL 132
           HA SLKRRRK  KSG          +ELSSFLGS    RGN+ ES PDPLLSPFLCS ++
Sbjct: 85  HAHSLKRRRKSQKSGAWTNSPL---RELSSFLGS----RGNSYESAPDPLLSPFLCSISV 137

Query: 133 SDTKGIQKDDC-TNKFSLASDLKRYPPSS 160
           SD  G Q+D C ++  S ASD+K   PS+
Sbjct: 138 SD--GNQQDKCSSDNASFASDMKSTVPST 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540495|ref|XP_002511312.1| conserved hypothetical protein [Ricinus communis] gi|223550427|gb|EEF51914.1| conserved hypothetical protein [Ricinus communis]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 106/138 (76%)

Query: 5   DNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKD 64
           D+H ++D+++ DDD +A FPCPFCY++IE H++CSHLQ EHCF++KNAVCPLCAANLGKD
Sbjct: 119 DHHLLIDDSDGDDDARAYFPCPFCYVDIEIHVLCSHLQNEHCFDLKNAVCPLCAANLGKD 178

Query: 65  AAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLS 124
              HF+V HASSLKRRRK LKSG   G SAM+ K+L SFLGS    R N  E+ PDPLLS
Sbjct: 179 VIGHFIVHHASSLKRRRKSLKSGPWIGSSAMINKDLGSFLGSSANGRANINEAAPDPLLS 238

Query: 125 PFLCSGTLSDTKGIQKDD 142
           PFL   + S  KG ++D+
Sbjct: 239 PFLGGVSHSHPKGSEQDE 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461655|ref|NP_001054427.1| Os05g0107900 [Oryza sativa Japonica Group] gi|75141142|sp|Q7XBA5.1|DI196_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 6; AltName: Full=OsDi19-6 gi|14719312|gb|AAK73130.1|AC079022_3 unknown protein [Oryza sativa] gi|33151123|gb|AAP97430.1| drought-induced protein DI1 [Oryza sativa Japonica Group] gi|113577978|dbj|BAF16341.1| Os05g0107900 [Oryza sativa Japonica Group] gi|222629917|gb|EEE62049.1| hypothetical protein OsJ_16833 [Oryza sativa Japonica Group]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 79/125 (63%), Gaps = 2/125 (1%)

Query: 6   NHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA 65
           N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL KD 
Sbjct: 20  NFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDT 79

Query: 66  AEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLPDPLL 123
            EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S PDPLL
Sbjct: 80  DEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSPDPLL 139

Query: 124 SPFLC 128
           S F+C
Sbjct: 140 SQFIC 144

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469572|ref|XP_004152493.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 16/142 (11%)

Query: 16  DDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHAS 75
           +DD +  F CP+CY++IE  ++CSHLQ+EHCF+ +NAVCPLCAA+LGKD   HF  QH+S
Sbjct: 29  EDDSRPYFSCPYCYVDIEVQVLCSHLQDEHCFDFRNAVCPLCAASLGKDVIGHFTAQHSS 88

Query: 76  SLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPE--SLPDPLLSPFLCSGTLS 133
           S+KRR+K  KS              S F     I +G      S PDPLL PF+CS   S
Sbjct: 89  SIKRRKKPEKSV------------SSGFNSKKVITKGREKRNGSAPDPLL-PFICSIPFS 135

Query: 134 DTKGIQKDD-CTNKFSLASDLK 154
           D +  ++DD   N  S+A ++K
Sbjct: 136 DHESGERDDRSENDASVAVNIK 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28195116|gb|AAO33770.1| unknown [Oryza sativa Indica Group] gi|125550535|gb|EAY96244.1| hypothetical protein OsI_18142 [Oryza sativa Indica Group]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 6   NHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDA 65
           N  +  E   DD+     PCPFCY+E+E   +C HLQEEHCF+MKNAVCP+CA NL KD 
Sbjct: 20  NFQMYSEIAGDDEWWEYIPCPFCYIEVEVPFLCDHLQEEHCFDMKNAVCPICADNLDKDT 79

Query: 66  AEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLPDPLL 123
            EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S PDPLL
Sbjct: 80  DEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSPDPLL 139

Query: 124 SPFLC 128
           S F+C
Sbjct: 140 SQFIC 144

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126984|ref|XP_003565167.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Brachypodium distachyon]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 87/141 (61%), Gaps = 5/141 (3%)

Query: 16  DDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHAS 75
           D ++   FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGK+ + HF VQH+ 
Sbjct: 58  DGELWEYFPCPFCYIEVEMPFICNHLQEEHCFDTRNAVCPICAENLGKNMSAHFRVQHSH 117

Query: 76  SLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDT 135
            LKRR+    S   +        E++S++ +  + +   PE  PDPLLS F+CS   +++
Sbjct: 118 LLKRRKPSKPSSWPSAAHGEEPYEVNSYMMNNRLCQD--PE--PDPLLSQFICSADQTES 173

Query: 136 KGIQKDDCTNKFSLA-SDLKR 155
           K   +       S A SD++R
Sbjct: 174 KSRDRSRRHGGGSSATSDVQR 194

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238014610|gb|ACR38340.1| unknown [Zea mays]

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 8/138 (5%)

Query: 23  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 82
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGKD A HF +QH   LKRR+ 
Sbjct: 43  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPICANNLGKDMAAHFRLQHTHLLKRRKP 102

Query: 83  CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNA---PESLPDPLLSPFLCS-GTLSDTKGI 138
              S      ++    +++S+       +  +    +  PDPLLS F+CS   +      
Sbjct: 103 YRPSSCPAAATSPATYQVNSYYEEAEPQQHYSRPYKDPAPDPLLSQFICSVDAIPGDDNA 162

Query: 139 QKDD----CTNKFSLASD 152
           QKDD      NK + ASD
Sbjct: 163 QKDDQRLKLNNKGATASD 180

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115442503|ref|NP_001045531.1| Os01g0971100 [Oryza sativa Japonica Group] gi|75106327|sp|Q5JME8.1|DI195_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 5; AltName: Full=OsDi19-5 gi|57899211|dbj|BAD87360.1| putative drought-induced protein DI [Oryza sativa Japonica Group] gi|113535062|dbj|BAF07445.1| Os01g0971100 [Oryza sativa Japonica Group] gi|125529280|gb|EAY77394.1| hypothetical protein OsI_05382 [Oryza sativa Indica Group] gi|125573470|gb|EAZ14985.1| hypothetical protein OsJ_04920 [Oryza sativa Japonica Group] gi|215697475|dbj|BAG91469.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 23  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 82
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 83  CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAP--ESLPDPLLSPFLCSGTLSDTKG 137
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT  
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNS 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226502390|ref|NP_001148656.1| LOC100282272 [Zea mays] gi|195621134|gb|ACG32397.1| fb2 [Zea mays]

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 80/138 (57%), Gaps = 8/138 (5%)

Query: 23  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 82
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGKD A HF +QH   LKRR+ 
Sbjct: 43  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPICANNLGKDMAAHFKLQHTHLLKRRKP 102

Query: 83  CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNA---PESLPDPLLSPFLCS-GTLSDTKGI 138
              S      ++    +++S+       +  +    +  PDPLLS F+CS   +      
Sbjct: 103 YRPSSCPAAATSPATYQVNSYYEEAEPQQHYSRPYKDPAPDPLLSQFICSVDAIPGDDNA 162

Query: 139 QKDD----CTNKFSLASD 152
           QKDD      NK + ASD
Sbjct: 163 QKDDQRLKLNNKGATASD 180

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.767	0.684	0.305	2.6e-15
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.575	0.540	0.377	6.9e-15
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.565	0.502	0.369	2.3e-14
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.348	0.312	0.347	4.5e-11
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.636	0.552	0.263	7.8e-07

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 52/170 (30%), Positives = 79/170 (46%)

Query:     1 MCHADNHSIVDETEIDDDVKACFPCPFC--YLEIEAHMICSHLQEEHCFEMKNAVCPLCA 58
             +  +DN    +E E +DD +  + CPFC  Y +I +  +C H+ E+H  + KN VCP+CA
Sbjct:    22 LSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS--LCCHIDEDHPMDAKNGVCPICA 79

Query:    59 ANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML---------GKELSSFLGSPTI 109
               +  D   H  +QHA+  K  RK  +   R G  +ML         G   S F G+   
Sbjct:    80 VKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRA 137

Query:   110 VRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDD-CTNKFSLASDLKRYPP 158
             V  ++     DPLLS F+    ++D   I +   C +  S    L +  P
Sbjct:   138 VSSSSASIAADPLLSSFI--SPMADDFFISESSLCADTSSAKKTLNQSLP 185

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 46/122 (37%), Positives = 63/122 (51%)

Query:    12 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 71
             + E +DD+KA F CPFC  E +   +C H+   H  E KN VCP+C   +G D   H   
Sbjct:    32 DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITT 91

Query:    72 QHASSLK-RRRKCLKSGLRNGGSAMLGKEL-----SSFLGSPTIVRGNAPESLPDPLLSP 125
             QH +  K +RR+ L+ G  +     L KEL      S  GS T +  +  +S  DPLLS 
Sbjct:    92 QHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDS--DPLLSS 149

Query:   126 FL 127
             F+
Sbjct:   150 FM 151

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 48/130 (36%), Positives = 71/130 (54%)

Query:    11 DETEIDDDVKACFPCPFC--YLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEH 68
             +E + +++ +  F CPFC  Y +I +  +C H+ E+H  E KN VCP+CA  +G D   H
Sbjct:    32 EEIDGEEEFREEFACPFCSDYFDIVS--LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAH 89

Query:    69 FMVQHASSLKRRRKCLKSGLRNGGS----AMLGKEL------SSFLGSPTIVRGNAPESL 118
               +QHA+  K  RK  K   R GGS    ++L +E       S F GS  IV  ++  ++
Sbjct:    90 ITLQHANIFKMHRK-RKP--RRGGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNV 146

Query:   119 P-DPLLSPFL 127
               DPLLS F+
Sbjct:   147 AADPLLSSFI 156

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:    14 EIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQH 73
             E+DDD+   +PCPFC  + +   +C H+ EEH  E  N +CP+C+  +     +H    H
Sbjct:    38 EVDDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHH 97

Query:    74 ASSLKRRRK 82
                LK  +K
Sbjct:    98 RDVLKSEQK 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 38/144 (26%), Positives = 61/144 (42%)

Query:    12 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNA--------------VCPLC 57
             E E DD++   +PCPFC  + +   +C H+ EEH  +  N               +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    58 AANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPES 117
             +  +     +H   QH    KR  K       + G+    K L S +  P +   +  +S
Sbjct:    92 SRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKS 147

Query:   118 LPDPLLSPFLCSGTLSDTKGIQKD 141
             + DPLLS      +   +K +Q D
Sbjct:   148 VLDPLLSFIYNPPSPKKSKLVQPD 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       198   0.00083  111 3  11 22  0.44    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.73u 0.09s 19.82t   Elapsed:  00:00:01
  Total cpu time:  19.73u 0.09s 19.82t   Elapsed:  00:00:01
  Start:  Fri May 10 07:10:56 2013   End:  Fri May 10 07:10:57 2013

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	2e-38

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  130 bits (330), Expect = 2e-38
 Identities = 63/144 (43%), Positives = 82/144 (56%), Gaps = 17/144 (11%)

Query: 11  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 70
           ++ E +D+V+  FPCPFCY + +   +C H+ EEH FE KN VCP+CA  +GKD   H  
Sbjct: 22  EDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEHPFEAKNGVCPVCADRVGKDMVAHIT 81

Query: 71  VQHASSLK--RRRKCLKSGLRNGGS----AMLGKELS-----SFLGSPTIVRG-NAPESL 118
           VQH    K  RRR+     LR GGS    ++L +EL      S LGS  +    NA +S 
Sbjct: 82  VQHGHLFKMQRRRR-----LRRGGSSSALSLLKRELRDGNLQSLLGSSCMSSSSNASDSA 136

Query: 119 PDPLLSPFLCSGTLSDTKGIQKDD 142
           PDPLLS F+CS   +DT    K D
Sbjct: 137 PDPLLSSFICSSPSADTSSTSKSD 160

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	99.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.79
KOG1280	381	consensus Uncharacterized conserved protein contai	97.6
KOG2923	67	consensus Uncharacterized conserved protein [Funct	94.85
COG5216	67	Uncharacterized conserved protein [Function unknow	94.22
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	92.02
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.88
PHA00732	79	hypothetical protein	89.5
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	89.26
PLN03086	567	PRLI-interacting factor K; Provisional	89.09
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.09
KOG1842	505	consensus FYVE finger-containing protein [General	88.79
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	87.36
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	87.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	85.06
smart00531	147	TFIIE Transcription initiation factor IIE.	84.83
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.12
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	83.03

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=99.79  E-value=2.1e-20  Score=144.85  Aligned_cols=95  Identities=23%  Similarity=0.318  Sum_probs=81.1

Q ss_pred             hhhcch-----hhhccCCCCccCCCCCCCCCCCcchhhccCCCCCCCCCCccccccCcccccccccCCCCchhhHHhhhH
Q 029136           94 AMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKRYPPSSEYKLLWSQ  168 (198)
Q Consensus        94 ~ll~k~-----Lqsllggs~~~~~~ssn~~pDPLLSsFi~~~~~~e~~~~e~s~~~~~~s~~~~~~r~~~~~~~k~~~~~  168 (198)
                      .+||||     ||+||||+++++++++|++|||||||||||++.++  .++..+.......+...+.......|+.+.++
T Consensus         3 sll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~   80 (105)
T PF14571_consen    3 SLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFPAPE--AEEPSKSSSSSEEKKSSKKSSSEQNVKSSADS   80 (105)
T ss_pred             chhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCCCcc--ccccCCccccccccccccccchhcccccccCC
Confidence            367886     79999998667789999999999999999999998  66666654444445667778889999999999


Q ss_pred             HHHHHHhcccccccchhhhhhhhe
Q 029136          169 LLFKKLANKISVSSTMHFKIDVLL  192 (198)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~~~~~  192 (198)
                      .|.+|++++...|  ..|||.+||
T Consensus        81 ~lS~ee~eEk~~R--seFVQ~Lll  102 (105)
T PF14571_consen   81 SLSDEEQEEKAQR--SEFVQGLLL  102 (105)
T ss_pred             CCCHHHHHHHHHH--HHHHHHHHH
Confidence            9999999999999  999999987

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.79  E-value=6.1e-20  Score=125.53  Aligned_cols=53  Identities=32%  Similarity=0.726  Sum_probs=51.6

Q ss_pred             eecCCCCccchhHHHHHhhhhhhccCCcccccccccccchhhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~d~v~Hit~qH~   74 (198)
                      +|+||||+++||+.+|+.|++++|+.+.+++|||||+.+++.||++||+.+||
T Consensus         2 ~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            69999999999999999999999999999999999999999999999999996

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=97.60  E-value=3.9e-05  Score=71.30  Aligned_cols=41  Identities=32%  Similarity=0.747  Sum_probs=38.8

Q ss_pred             eecCCCCcc-chhHHHHHhhhhhhccCCcccccccccccchh
Q 029136           22 CFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        22 ~F~CPfC~e-~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      .|.||||++ .|....+.+|+..+|+.....++||||+..+.
T Consensus        79 SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~~  120 (381)
T KOG1280|consen   79 SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANPE  120 (381)
T ss_pred             cccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCcc
Confidence            899999998 99999999999999999998899999999865

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.013  Score=43.26  Aligned_cols=46  Identities=22%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             ccccc-cccCcceeecCCCCccchhHHHHHhhhhhhccCCcccccccccccchh
Q 029136           10 VDETE-IDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        10 ~de~e-~ddd~r~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      |+|++ ++|.-..+|||| |+..|.+.      .++=..--..+.||-|+-.+.
T Consensus         9 iedfe~~~e~~~y~yPCp-CGDrf~It------~edL~~ge~Va~CpsCSL~I~   55 (67)
T KOG2923|consen    9 IEDFEFDEENQTYYYPCP-CGDRFQIT------LEDLENGEDVARCPSCSLIIR   55 (67)
T ss_pred             eecceeccCCCeEEcCCC-CCCeeeec------HHHHhCCCeeecCCCceEEEE
Confidence            45665 334456799999 98766554      111122334578999998764

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.017  Score=42.32  Aligned_cols=38  Identities=26%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             CcceeecCCCCccchhHHHHHhhhhhhccCCcccccccccccchh
Q 029136           18 DVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        18 d~r~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      +-..+|||| |+.-|.+.     +++- ..--+.++||-|+-+|-
T Consensus        18 ~~~ftyPCP-CGDRFeIs-----LeDl-~~GE~VArCPSCSLiv~   55 (67)
T COG5216          18 EKTFTYPCP-CGDRFEIS-----LEDL-RNGEVVARCPSCSLIVC   55 (67)
T ss_pred             CceEEecCC-CCCEeEEE-----HHHh-hCCceEEEcCCceEEEE
Confidence            345799999 98766554     1111 22345688999998764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=92.02  E-value=0.12  Score=28.11  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=15.1

Q ss_pred             ecCCCCcc-chhHHHHHhhhhhhc
Q 029136           23 FPCPFCYL-EIEAHMICSHLQEEH   45 (198)
Q Consensus        23 F~CPfC~e-~fD~~~Lc~H~~eeH   45 (198)
                      |.||+|+. --+..+|-.|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            67888876 445677778877665

...

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.88  E-value=0.24  Score=47.25  Aligned_cols=64  Identities=19%  Similarity=0.319  Sum_probs=47.5

Q ss_pred             CcceeecCCCCcc-chhHHHHHhhhhhhccCCcccccccccccc-------------------------------hh---
Q 029136           18 DVKACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAAN-------------------------------LG---   62 (198)
Q Consensus        18 d~r~~F~CPfC~e-~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~-------------------------------v~---   62 (198)
                      -++--=.|-||.. =+|-.+|..||.+.|-      .|-||..+                               ++   
T Consensus       216 GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~  289 (493)
T COG5236         216 GFKGHPLCIFCKIYFYDDDELRRHCRLRHE------ACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCY  289 (493)
T ss_pred             CcCCCchhhhccceecChHHHHHHHHhhhh------hhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEE
Confidence            3555668999976 7899999999999884      47777654                               11   


Q ss_pred             -----hhHhhhHhhhhhhhhhhhhcccCCC
Q 029136           63 -----KDAAEHFMVQHASSLKRRRKCLKSG   87 (198)
Q Consensus        63 -----~d~v~Hit~qH~~~~Krrrr~rk~~   87 (198)
                           ..+..||+..|+..+|.+-+.+.+.
T Consensus       290 vf~~~~el~~h~~~~h~~~~~~~~~~~~~~  319 (493)
T COG5236         290 VFPYHTELLEHLTRFHKVNARLSEIPRPGR  319 (493)
T ss_pred             EeccHHHHHHHHHHHhhcccccCcCCCCcc
Confidence                 2678888888888887666666554

>PHA00732 hypothetical protein

Probab=89.50  E-value=0.31  Score=36.25  Aligned_cols=42  Identities=26%  Similarity=0.729  Sum_probs=31.5

Q ss_pred             ecCCCCccch-hHHHHHhhhhhhccCCcccccccccccchhhhHhhhH
Q 029136           23 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   69 (198)
Q Consensus        23 F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~d~v~Hi   69 (198)
                      |.|+.|++.| ....|..|....|.-    ..|+.|...-. ++..|+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhh
Confidence            7899999855 678899998865542    26999988654 566665

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=89.26  E-value=0.26  Score=29.34  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.6

Q ss_pred             eecCCCCccchhHHHHHhhhh
Q 029136           22 CFPCPFCYLEIEAHMICSHLQ   42 (198)
Q Consensus        22 ~F~CPfC~e~fD~~~Lc~H~~   42 (198)
                      ..+||+|+..|....|-.|..
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            468999999999999999964

>PLN03086 PRLI-interacting factor K; Provisional

Probab=89.09  E-value=0.36  Score=47.62  Aligned_cols=47  Identities=21%  Similarity=0.419  Sum_probs=36.3

Q ss_pred             cceeecCCCCccchhHHHHHhhhhhhccCCcccccccccccch-hhhHhhhHh
Q 029136           19 VKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL-GKDAAEHFM   70 (198)
Q Consensus        19 ~r~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v-~~d~v~Hit   70 (198)
                      +..-+.||+|++.|....|-.|....|    +...|| |.... ..++..|++
T Consensus       450 l~~H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~  497 (567)
T PLN03086        450 AKNHVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQA  497 (567)
T ss_pred             cccCccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhh
Confidence            334468999999888899999998866    678999 97543 357887874

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.09  E-value=0.3  Score=27.78  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=16.9

Q ss_pred             ecCCCCccchhHHHHHhhhhhhcc
Q 029136           23 FPCPFCYLEIEAHMICSHLQEEHC   46 (198)
Q Consensus        23 F~CPfC~e~fD~~~Lc~H~~eeH~   46 (198)
                      |.||+|...-....|-.|+...|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            789999653237789999988885

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=88.79  E-value=0.23  Score=48.22  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=30.5

Q ss_pred             cCcceeecCCCCccchh-HHHHHhhhhhhccCCccc
Q 029136           17 DDVKACFPCPFCYLEIE-AHMICSHLQEEHCFEMKN   51 (198)
Q Consensus        17 dd~r~~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~   51 (198)
                      ++++.-|.||+|.++|+ +..|-+|++.+|+.|...
T Consensus        10 ~~i~egflCPiC~~dl~~~~~L~~H~d~eH~~ed~~   45 (505)
T KOG1842|consen   10 GEILEGFLCPICLLDLPNLSALNDHLDVEHFEEDEK   45 (505)
T ss_pred             chhhhcccCchHhhhhhhHHHHHHHHhhhccccchh
Confidence            67889999999988775 678999999999998764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=87.36  E-value=0.36  Score=34.16  Aligned_cols=48  Identities=23%  Similarity=0.582  Sum_probs=14.4

Q ss_pred             cCCCCccc-hhHHHHHhhhhhhccCCcc---------------------cccccccccch--hhhHhhhHhh
Q 029136           24 PCPFCYLE-IEAHMICSHLQEEHCFEMK---------------------NAVCPLCAANL--GKDAAEHFMV   71 (198)
Q Consensus        24 ~CPfC~e~-fD~~~Lc~H~~eeH~~e~k---------------------~vVCPVCa~~v--~~d~v~Hit~   71 (198)
                      .|+||... -+...|..|+...|.+...                     .-.|++|....  ...+..|++.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            39999875 4578899999999987532                     12399999975  4689999954

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.27  E-value=0.4  Score=26.69  Aligned_cols=21  Identities=19%  Similarity=0.621  Sum_probs=13.1

Q ss_pred             ecCCCCccch-hHHHHHhhhhh
Q 029136           23 FPCPFCYLEI-EAHMICSHLQE   43 (198)
Q Consensus        23 F~CPfC~e~f-D~~~Lc~H~~e   43 (198)
                      |.||.|++.| +...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777633 45566666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.06  E-value=0.58  Score=33.36  Aligned_cols=27  Identities=26%  Similarity=0.678  Sum_probs=16.8

Q ss_pred             Ccccccccccccchh--hhHhhhHhhhhh
Q 029136           48 EMKNAVCPLCAANLG--KDAAEHFMVQHA   74 (198)
Q Consensus        48 e~k~vVCPVCa~~v~--~d~v~Hit~qH~   74 (198)
                      ...+..||+|.+.+.  .|+-.|+.+.|.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            345679999999754  799999976664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.83  E-value=0.72  Score=37.17  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=26.4

Q ss_pred             CcceeecCCCCccchhHHHHHhhhhhhccCCcccccccccccchh
Q 029136           18 DVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        18 d~r~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      .-...|.||.|+..|+..+--...+   +  ...-+||.|...+-
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~~d---~--~~~f~Cp~Cg~~l~  134 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQLLD---M--DGTFTCPRCGEELE  134 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHhcC---C--CCcEECCCCCCEEE
Confidence            3467899999988666544332222   2  34489999998753

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.12  E-value=0.39  Score=30.11  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             eeecCCCCccchhHHHHHhhhhhhccCCcccccccccccc
Q 029136           21 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   60 (198)
Q Consensus        21 ~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~   60 (198)
                      .+|.||-|+..|++..-.        .+....+||.|.+.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~   35 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGD   35 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCc
Confidence            579999999877643211        12566889999984

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=83.03  E-value=0.61  Score=29.29  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             ecCCCCccchhHHHHHhhhhhhccCCcccccccccccc
Q 029136           23 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   60 (198)
Q Consensus        23 F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~   60 (198)
                      +.||.|+..|.+..-      ..+.+...+.||.|...
T Consensus         3 ~~CP~C~~~~~v~~~------~~~~~~~~v~C~~C~~~   34 (38)
T TIGR02098         3 IQCPNCKTSFRVVDS------QLGANGGKVRCGKCGHV   34 (38)
T ss_pred             EECCCCCCEEEeCHH------HcCCCCCEEECCCCCCE
Confidence            689999876555421      12233346889999765

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.13
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.41
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.26
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	96.03
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	95.93
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.84
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.61
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	95.6
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	95.58
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	95.5
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.38
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	95.31
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.19
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.14
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	94.94
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.93
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	94.88
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	94.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.71
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.66
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.61
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	94.6
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	94.52
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	94.49
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	94.45
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.45
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.41
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	93.87
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.81
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	93.58
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	93.15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	92.91
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	92.4
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	92.34
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	91.71
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	91.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	91.54
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.5
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	91.48
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.48
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	91.47
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	91.43
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	91.42
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	91.33
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	91.19
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	91.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	91.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.91
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.88
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.83
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	90.83
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	90.77
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	90.71
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	90.71
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.65
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.56
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.55
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.54
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.49
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.48
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	90.46
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.41
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.96
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.79
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.76
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.73
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	89.65
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.65
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.49
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	89.48
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	89.42
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.42
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.39
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.37
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	89.29
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	89.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	89.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	88.99
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	88.96
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.95
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	88.93
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	88.9
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.85
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.83
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	88.76
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.75
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.65
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.63
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.61
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.59
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.46
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.26
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	88.23
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.1
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.98
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	87.94
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	87.86
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	87.59
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.47
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	87.42
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.3
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.88
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	86.67
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.57
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	86.14
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	85.54
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	85.47
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	85.45
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	84.58
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	84.4
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	83.24
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	83.01
1paa_A	30	Yeast transcription factor ADR1; transcription reg	82.89
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	82.79
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	82.7
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	82.55
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	81.4
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	81.28
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	80.99
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	80.97
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	80.9
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	80.89
2ect_A	78	Ring finger protein 126; metal binding protein, st	80.58
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	80.21

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.13  E-value=0.00049  Score=44.26  Aligned_cols=54  Identities=20%  Similarity=0.483  Sum_probs=44.4

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      ..|.|+.|+..| ....|..|....|....++-.|++|...-  ..++..|++..|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            359999999866 46789999998887677889999999864  4689999987775

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.13  E-value=0.00046  Score=45.99  Aligned_cols=53  Identities=21%  Similarity=0.472  Sum_probs=43.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+...|..+.+.-.|++|...-  ..++..|++..|+
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            49999998855 56889999998898777888999999864  4689999977774

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.41  E-value=0.0035  Score=38.89  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccc--hhhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--v~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|...  -..++..|++..|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            59999999855 56779999875 433 456889999986  34689999987764

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.26  E-value=0.0052  Score=41.62  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|++..|+
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             CeECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcC
Confidence            47777777654 45567777664 322 3456677777653  3467777765544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.03  E-value=0.005  Score=40.01  Aligned_cols=47  Identities=26%  Similarity=0.492  Sum_probs=38.3

Q ss_pred             eeecCCCCccchhHHHHHhhhhhhccCCccccccc-ccccc--hhhhHhhhHh
Q 029136           21 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCP-LCAAN--LGKDAAEHFM   70 (198)
Q Consensus        21 ~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCP-VCa~~--v~~d~v~Hit   70 (198)
                      -.|.|++|+..|....|..|...   ...++..|+ .|...  ...++..|++
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~   58 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLK   58 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHH
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHH
Confidence            46999999998888889999876   556788999 99885  3458888884

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.93  E-value=0.0096  Score=38.71  Aligned_cols=52  Identities=17%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      ..|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|++..|+
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            359999998855 46778999876 644 4568999999874  3689999876664

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.84  E-value=0.0093  Score=39.51  Aligned_cols=53  Identities=17%  Similarity=0.327  Sum_probs=40.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCC--cccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFE--MKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e--~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+...|..+  .+.-.|++|...-  ..++..|++..|+
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   72 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG   72 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC
Confidence            49999998855 5667899998877654  3668999999864  3688888865443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.61  E-value=0.011  Score=38.60  Aligned_cols=47  Identities=19%  Similarity=0.520  Sum_probs=23.6

Q ss_pred             ecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhh
Q 029136           23 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMV   71 (198)
Q Consensus        23 F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~   71 (198)
                      |.|+.|+..| ....|..|+...+  ..+.-.|++|...-  ..++..|++.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHTFI   51 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHH--TCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHHHcC--CCCCeeCCcCChhhCCHHHHHHHHHH
Confidence            5566665533 3445556655422  12345566665542  2455555543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.60  E-value=0.004  Score=43.73  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=40.5

Q ss_pred             eeecCCCCccch--hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           21 ACFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        21 ~~F~CPfC~e~f--D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      ..|.|+.|+..|  ....|..|+...|. ..+.-.|++|...-  ..++..|++..|+
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~-~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQK-LQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHH-HHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcC-CCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            359999999877  57889999976543 24567999999864  3688999866664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.58  E-value=0.016  Score=38.00  Aligned_cols=50  Identities=16%  Similarity=0.301  Sum_probs=37.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|...-  ..++..|+++.+
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            59999998855 56778899875 433 4668999999864  358888886543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.50  E-value=0.016  Score=41.36  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=38.9

Q ss_pred             eecCCCCccch--hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f--D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..|  ....|..|+.. |  ..++-.|++|...-  ..++..|+..-|
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            59999999988  78899999865 5  56788999999874  368888853344

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.38  E-value=0.0054  Score=42.17  Aligned_cols=48  Identities=27%  Similarity=0.445  Sum_probs=39.4

Q ss_pred             eeecCCCCccchhHHHHHhhhhhhccCCcccccccccccchh-hhHhhhHhh
Q 029136           21 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG-KDAAEHFMV   71 (198)
Q Consensus        21 ~~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~-~d~v~Hit~   71 (198)
                      -.+.|+||+..|-...|-.|.  .|+- .++..||.|...+. .+|..|+.+
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c~-~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYCG-ARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHHH-HCEEECSSSCCEEETTGGGTHHHH
T ss_pred             cccCCcccChHhhHHHHHHHH--hHcC-CCceEcccCCCcCcHHHHHHHHHH
Confidence            359999999999999999998  5765 57789999998644 688888853

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=95.31  E-value=0.018  Score=35.57  Aligned_cols=49  Identities=16%  Similarity=0.444  Sum_probs=36.9

Q ss_pred             ecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           23 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        23 F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      |.|+.|+..| ....|..|+.. |.. .++-.|++|...-  ..++..|++..|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~   53 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKA   53 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhc
Confidence            8899999865 56778999876 433 4667899999864  368888886544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.19  E-value=0.025  Score=39.03  Aligned_cols=52  Identities=17%  Similarity=0.376  Sum_probs=37.7

Q ss_pred             ceeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           20 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        20 r~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ...|.|++|+..| ....|..|+...+.  .+.-.|++|...-  ..++..|++..+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~   69 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTD--ERPYTCDICHKAFRRQDHLRDHRYIHS   69 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCC--SCCCBCSSSCCBCSCHHHHHHHGGGSC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCC--CCCcCCCCccchhCCHHHHHHHHHHhC
Confidence            3469999998866 56778889875442  3567899998864  358888886544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.14  E-value=0.02  Score=38.71  Aligned_cols=50  Identities=14%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+...+.  .+.-.|++|...-  ..++..|++..+
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~   60 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRCHTG--VKPYKCKTCDYAAADSSSLNKHLRIHS   60 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC--CCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CeECCCCCCccCCHHHHHHHHHhcCC--CCCEeCCCCCCccCCHHHHHHHHHHhC
Confidence            48999998865 56678889875432  3567899998864  358888886533

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.08  E-value=0.024  Score=35.42  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccchh--hhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~--~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|...-.  .++..|+...|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            48999998865 56789999876 543 46678999998743  58888874444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.07  E-value=0.029  Score=36.74  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             ceeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           20 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        20 r~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ...|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|+++.+
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcC
Confidence            3569999999866 46778899865 443 3567899999864  468888986543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.94  E-value=0.019  Score=37.90  Aligned_cols=54  Identities=15%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccC-Ccccccccccccch--hhhHhhhHhhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCF-EMKNAVCPLCAANL--GKDAAEHFMVQHAS   75 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~-e~k~vVCPVCa~~v--~~d~v~Hit~qH~~   75 (198)
                      .|.|+.|+..| ....|..|+...+.. ..+.-.|++|...-  ..++..|++..|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            59999999865 467789998765432 24678999999874  36888898666654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.93  E-value=0.02  Score=38.64  Aligned_cols=53  Identities=19%  Similarity=0.423  Sum_probs=41.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+...|....+.-.|++|...-  ..++..|+...|.
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence            59999998855 56789999987665545788999999864  3588999865554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=94.88  E-value=0.03  Score=37.86  Aligned_cols=54  Identities=20%  Similarity=0.507  Sum_probs=39.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHASSL   77 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~~~~   77 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|...-  ..++..|+...|+..+
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   59 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPI   59 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcc
Confidence            48899998855 56778888875 543 3557899998863  3688899988886444

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=94.76  E-value=0.032  Score=40.10  Aligned_cols=49  Identities=24%  Similarity=0.648  Sum_probs=34.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+.. |   .++-.|++|...-  ..++..|++..|+
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            48888888755 44567788765 4   4556888888763  3578888876665

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.71  E-value=0.026  Score=38.17  Aligned_cols=50  Identities=16%  Similarity=0.361  Sum_probs=37.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|+++.|
T Consensus        36 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~   88 (96)
T 2dmd_A           36 PYKCKTCDYAAADSSSLNKHLRI-HSD-ERPFKCQICPYASRNSSQLTVHLRSHT   88 (96)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CEeCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHhc
Confidence            59999998855 56788999876 433 4568899999863  468888886544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.66  E-value=0.033  Score=39.01  Aligned_cols=53  Identities=15%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhcc-CCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHC-FEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~-~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+...|. ...+.-.|++|...-  ..++..|++..++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            58999998744 67788899887543 234567899998863  3588888865443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.61  E-value=0.039  Score=38.05  Aligned_cols=51  Identities=18%  Similarity=0.322  Sum_probs=37.6

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ..|.|+.|+..| ....|..|+.. |.. .+.-.|++|...-  ..++..|+++.+
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~   97 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYI-HSK-EKPFKCQECGKGFCQSRTLAVHKTLHM   97 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGG-SCC-CCTTSCSSSCCCCSSHHHHHHHHHHTT
T ss_pred             CCcCCCCccchhCCHHHHHHHHHH-hCC-CCCeECCCcCCcccCHHHHHHHHHHhC
Confidence            359999998865 66789999765 433 4567899999864  358888885443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=94.60  E-value=0.037  Score=36.84  Aligned_cols=48  Identities=19%  Similarity=0.487  Sum_probs=25.7

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMV   71 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~   71 (198)
                      .|.||+  |+..| ....|..|+...+.  .+.-.|++|...-  ..++..|+..
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~   56 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRT   56 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCC--CCCccCCCCCcccCCHHHHHHHHHH
Confidence            366663  66644 34556666654322  2445677766642  2466666653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=94.52  E-value=0.042  Score=40.40  Aligned_cols=56  Identities=18%  Similarity=0.281  Sum_probs=42.1

Q ss_pred             CcceeecCCCCccch-hHHHHHhhhhhhccCCccc-------ccccccccch--hhhHhhhHhhhh
Q 029136           18 DVKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        18 d~r~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~-------vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      +-...|+|+.|+..| ....|..|+...|..+...       -.|++|...-  ..++..|+.+.+
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   86 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC
Confidence            344579999999866 5778999999989876432       4799998864  358888986543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=94.49  E-value=0.042  Score=35.80  Aligned_cols=50  Identities=16%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+...+.  .+.-.|++|...-  ..++..|+++.+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcC--CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            59999998855 67789999875443  3668899999864  368999986544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.45  E-value=0.037  Score=36.46  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             eeecCCCCccchh-HHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           21 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        21 ~~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ..|.|+.|+..|. ...|..|+.. |.. .++-.|++|...-  ..++..|+++.+
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~   70 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHT   70 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhC
Confidence            4699999998664 6778999875 443 4668999999863  468888886543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.45  E-value=0.043  Score=38.36  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ..|.||.|+..| ....|..|+...+.  .++-.|++|...-  ..++..|+...|
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~~~   59 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTG--EKPFECPKCGKCYFRKENLLEHEARNC   59 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSS--CCSCBCTTTCCBCSSHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCC--CCCeECCCCCchhcCHHHHHHHHhhhh
Confidence            358999998865 57788889875442  3567899998863  468888886543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.41  E-value=0.066  Score=37.25  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHASS   76 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~~~   76 (198)
                      .|.|++|+..| ....|..|+...+ . .+.-.|++|...-  ..++..|++..|...
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~   92 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKIHT-G-IKPYECNICAKRFMWRDSFHRHVTSCTKSY   92 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTTTC-C-CCCEECSSSCCEESCHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcC-C-CCCeeCCCCcchhcCHHHHHHHHHHccccc
Confidence            37777776643 3456666765432 2 2445677777653  356777776655443

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.07  E-value=0.049  Score=38.83  Aligned_cols=52  Identities=23%  Similarity=0.406  Sum_probs=40.1

Q ss_pred             eeecCCCCccchh-HHHHHhhhhhhccCCcccccccccccc--hhhhHhhhHhhhhh
Q 029136           21 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMVQHA   74 (198)
Q Consensus        21 ~~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVCa~~--v~~d~v~Hit~qH~   74 (198)
                      ..|.||.|+..|. ...|..|+...|  ..++-.|++|...  -..++..|+...|.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~--~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLH--AAQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTS--CSSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhcc--CCCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            3599999999664 678999987644  3467899999987  44699999866564

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.87  E-value=0.084  Score=35.62  Aligned_cols=51  Identities=20%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccc-------ccccccccch--hhhHhhhHhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANL--GKDAAEHFMVQ   72 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~-------vVCPVCa~~v--~~d~v~Hit~q   72 (198)
                      .|+|+.|+..| ....|..|+...|..+...       -.|++|...-  ..++..|+++.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H   85 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH   85 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhc
Confidence            47899998865 5678999998777665321       5899999874  36888998653

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.81  E-value=0.014  Score=39.56  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=41.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccchh--hhHhhhHhhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   75 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~--~d~v~Hit~qH~~   75 (198)
                      .|.|+.|+..| ....|..|....|.   ...+|+.|...-.  .++..|+...|..
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            49999999865 56889999999884   6789999988643  5899999766654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=93.58  E-value=0.07  Score=37.65  Aligned_cols=48  Identities=23%  Similarity=0.508  Sum_probs=32.0

Q ss_pred             eecCC--CCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhh
Q 029136           22 CFPCP--FCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   72 (198)
Q Consensus        22 ~F~CP--fC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~q   72 (198)
                      .|.||  .|+..| +...|..|+. .|  ..+.-.|++|...-  ..++..|+...
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~-~h--~~~~~~C~~C~~~f~~~~~l~~H~~~h   57 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLH-TH--GPRVHVCAECGKAFVESSKLKRHQLVH   57 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHG-GG--SCCCEECTTTCCEESSHHHHHHHGGGT
T ss_pred             cccCCCCCCcCccCCHHHHHHHHH-Hc--CCCCeECCCCCchhCCHHHHHHHHHHc
Confidence            47788  787755 4567788875 45  45667788887753  35777777543

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.15  E-value=0.077  Score=33.08  Aligned_cols=39  Identities=13%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccc
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN   60 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~   60 (198)
                      ..|.|+.|+..| ....|..|+...|.- .++-.|++|...
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~   50 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSG   50 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCC
Confidence            359999999865 567788998877765 466789999764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.91  E-value=0.048  Score=39.87  Aligned_cols=51  Identities=25%  Similarity=0.459  Sum_probs=35.0

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccc--cccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|++  |+..| ....|..|+.. |.. .++-.|++  |...-  ..++..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            488987  88744 56678888875 433 35678888  88763  3588888854553

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.40  E-value=0.11  Score=36.14  Aligned_cols=45  Identities=24%  Similarity=0.454  Sum_probs=34.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   70 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit   70 (198)
                      .|.|+.|+..| ....|..|+.. |   .+.-.|++|...-  ..++..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            49999998855 56678889876 4   3678899998864  358888883

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.34  E-value=0.12  Score=30.52  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=26.7

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|....|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~-~k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTG-EKPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTT-SCSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCC-CCCCCCCCC
Confidence            499999988554 57788898756754 467889988

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.71  E-value=0.24  Score=32.17  Aligned_cols=51  Identities=25%  Similarity=0.550  Sum_probs=38.9

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccc--cccch--hhhHhhhHhhhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--~~d~v~Hit~qH   73 (198)
                      .|.|++  |+..| ....|..|+...|.. .+.-.|++  |...-  ..++..|+++.+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhC
Confidence            488888  98865 567899999877765 46689998  98863  468889986543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.67  E-value=0.17  Score=29.91  Aligned_cols=34  Identities=15%  Similarity=0.074  Sum_probs=25.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRG-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGG-GTSC-CCCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhh-hcCC-CCCCCCCCC
Confidence            49999998855 4567888965 4654 367889998

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=91.62  E-value=0.23  Score=33.46  Aligned_cols=54  Identities=17%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             cceeecCCC--Cccch-hHHHHHhhhhhhccCCccccccc--ccccch--hhhHhhhHhhhhh
Q 029136           19 VKACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        19 ~r~~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCP--VCa~~v--~~d~v~Hit~qH~   74 (198)
                      -+..|.|++  |+..| ....|..|+.. |.. .+.-.||  +|...-  ..++..|++..++
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHH-HSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHH-hCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            345789998  98855 57788889875 432 3567897  598763  3588888865443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=91.54  E-value=0.2  Score=32.60  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             ecC--CCCccch-hHHHHHhhhhhhccCCcccccccc--cccch--hhhHhhhHhhhhh
Q 029136           23 FPC--PFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        23 F~C--PfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--~~d~v~Hit~qH~   74 (198)
                      |.|  +.|+..| ....|..|... |.. .++-.|++  |...-  ..++..|+++.++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            788  7798865 46778888754 443 35678988  98753  3588888876665

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=91.50  E-value=0.17  Score=29.96  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGC-CCCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999999865 45678889765 544 367889998

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=91.48  E-value=0.17  Score=33.78  Aligned_cols=48  Identities=25%  Similarity=0.453  Sum_probs=37.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccc--hhhhHhhhHhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMV   71 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--v~~d~v~Hit~   71 (198)
                      -|.|+.|+..| ....|..|.. .|.- .++-.|++|...  -..++..|+++
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~-~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRR-AHLG-YRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH-HHHT-CCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHH-HhCC-CcCeECCCCCCCcCCHHHHHHHhCc
Confidence            39999999976 4567899986 4754 577899999996  44699999864

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.48  E-value=0.15  Score=30.12  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           12 PYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            49999998855 45678889754 6543 67889998

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.47  E-value=0.15  Score=35.49  Aligned_cols=49  Identities=22%  Similarity=0.474  Sum_probs=37.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+.  |.. .++-.|++|...-  ..++..|++..|
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H   93 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCE-YKKLTCLECMRTFKSSFSIWRHQVEVH   93 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCS-TGGGEEGGGTEECSSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCC-CCCccCccccchhCCHHHHHHHHHHHc
Confidence            59999998855 4677889983  754 4668999999864  368899985444

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=91.43  E-value=0.2  Score=29.61  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            49999998855 45778889765 644 467889998

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.42  E-value=0.11  Score=30.68  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCA   58 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa   58 (198)
                      .|.|+.|+..| ....|..|+.. |.- .+.-.||+|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HDG-SVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HSC-CCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-ccC-CCCCCCcCCC
Confidence            49999999865 56778889765 543 4677899983

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.33  E-value=0.35  Score=35.41  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=37.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhcc--CCcccccccccccch--hhhHhhhH
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHC--FEMKNAVCPLCAANL--GKDAAEHF   69 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~--~e~k~vVCPVCa~~v--~~d~v~Hi   69 (198)
                      .|.|+.|+..| ....|..|+...|.  ...++-.|++|...-  ..++..|+
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~   70 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHN   70 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHH
Confidence            49999999866 46779999987785  345678999999863  46888883

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=91.19  E-value=0.22  Score=32.93  Aligned_cols=51  Identities=18%  Similarity=0.488  Sum_probs=37.9

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      ..|.|++|+..| ....|..|+.. |.. .++-.|++|...-  ..++..|+.+.+
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHHH-cCC-CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            359999998855 56778999875 433 3567899999864  368999986544

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=91.15  E-value=0.19  Score=32.71  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccc---cccc--hhhhHhhhHhhhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL---CAAN--LGKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV---Ca~~--v~~d~v~Hit~qH   73 (198)
                      .|.||+  |++.| ....|..|+...+.     -.|++   |...  -..++..|++..|
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            499999  98855 67889999977655     67999   9876  3468999987654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=91.12  E-value=0.2  Score=32.32  Aligned_cols=48  Identities=21%  Similarity=0.497  Sum_probs=35.0

Q ss_pred             eeecCCC--Cccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHh
Q 029136           21 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   70 (198)
Q Consensus        21 ~~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit   70 (198)
                      ..|.||+  |+..| ....|..|+.. |.. .++-.|++|...-  ..++..|++
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHH
Confidence            3599996  98855 55778899764 543 3567899999864  358888874

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.91  E-value=0.19  Score=29.69  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=25.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HHSS-SSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHH-HHCC-CCCCCCCCC
Confidence            49999999855 4567888876 4544 467889998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.88  E-value=0.21  Score=29.45  Aligned_cols=34  Identities=12%  Similarity=-0.024  Sum_probs=25.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45778889765 644 467789998

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.83  E-value=0.2  Score=29.65  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=25.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTT-SCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45778889765 544 467789998

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=90.83  E-value=0.25  Score=32.59  Aligned_cols=51  Identities=20%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             eeecCCC--Cccch-hHHHHHhhhhhhccCCccccccc--ccccch--hhhHhhhHhhhh
Q 029136           21 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        21 ~~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCP--VCa~~v--~~d~v~Hit~qH   73 (198)
                      ..|.|++  |+..| ....|..|+.. |.. .++-.||  +|...-  ..++..|+...+
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTT-SCS-SCCEECCSTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHh-cCC-CCCcCCCCCCCCCccCCHHHHHHHHHHcC
Confidence            4588888  87755 45677788765 322 3556786  587753  357777875433

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=90.77  E-value=0.21  Score=29.39  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=25.4

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|- ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988554 5678889754 543 467889998

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=90.71  E-value=0.18  Score=38.30  Aligned_cols=51  Identities=18%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|+.|+..| ....|..|+...+.  .++-.|++|...-  ..++..|+++.++
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            48899998755 45678888876443  3557899998863  3588888876443

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=90.71  E-value=0.3  Score=35.55  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=32.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccC-Ccccccccccc-----cc--hhhhHhhhHhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCF-EMKNAVCPLCA-----AN--LGKDAAEHFMVQH   73 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~-e~k~vVCPVCa-----~~--v~~d~v~Hit~qH   73 (198)
                      .|.|+.|+..| ....|..|+...|.. +.+.-+|++|.     ..  -..++..|++..+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~   63 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT   63 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC
Confidence            47888888755 467788888875533 34556777643     22  2347777775543

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.65  E-value=0.21  Score=29.53  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=25.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCC-CCCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCC-CCCCCCCCC
Confidence            49999999865 45678889765 644 467789988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.56  E-value=0.22  Score=29.30  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=25.7

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK-CHTGE-RHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH-HHSCC-SSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHH-hcCCC-CCCCCCCC
Confidence            499999988554 577889975 56543 66789988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.55  E-value=0.16  Score=29.93  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQR-IHTGV-KPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHG-GGSCC-CSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHH-HcCCC-CCCCCCCC
Confidence            49999998855 4567888875 46543 67889998

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.54  E-value=0.23  Score=29.34  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=25.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~c   46 (46)
T 2ep2_A           12 PYECSICGKSFTKKSQLHVHQQ-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-TTSS-CCSCCSCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            49999998855 4577888976 4544 367789988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.22  Score=29.43  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=25.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|++|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKI-HTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-TSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678889754 543 467889988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.48  E-value=0.22  Score=29.49  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=25.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999855 55778899754 643 466789998

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.46  E-value=0.081  Score=37.05  Aligned_cols=50  Identities=14%  Similarity=0.095  Sum_probs=34.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhh-ccCCcccccccccccch----hhhHhhhHhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEE-HCFEMKNAVCPLCAANL----GKDAAEHFMV   71 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~ee-H~~e~k~vVCPVCa~~v----~~d~v~Hit~   71 (198)
                      .|.|+.|+..| ....|..|+... |..+.....|++|...-    ..++..|+++
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~   74 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK   74 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc
Confidence            49999998855 467889998851 33333344599998643    3577778754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.41  E-value=0.21  Score=37.60  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccccc--hhhhHhhhHhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMV   71 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--v~~d~v~Hit~   71 (198)
                      -.|.|+.|+..| ....|..|+. .|.. .++-.|++|...  -..++..|+.+
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFN-IHSW-EKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHH-HHHC-CSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHH-HcCC-CCCeeCCccCeecccccchhhhccc
Confidence            459999998855 5677888976 4654 356789999876  34588888754

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.16  E-value=0.23  Score=29.32  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=25.4

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQK-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH-HHHC-SSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            499999988554 567888976 4544 367889998

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.08  E-value=0.27  Score=29.13  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=25.6

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TSC-SSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999998654 5678889764 543 467889998

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=89.96  E-value=0.27  Score=29.14  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45668888764 644 467889988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=89.79  E-value=0.31  Score=28.62  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999865 45778889754 644 467789988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.76  E-value=0.22  Score=29.39  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRT-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHH-HSS-CCCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988554 5678889765 654 367889988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.73  E-value=0.31  Score=28.63  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG-GGCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            49999998855 4577889985 4644 466789988

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=89.65  E-value=0.36  Score=31.82  Aligned_cols=48  Identities=17%  Similarity=0.411  Sum_probs=35.3

Q ss_pred             eeecCCC--Cccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHh
Q 029136           21 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   70 (198)
Q Consensus        21 ~~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit   70 (198)
                      ..|.||+  |+..| ....|..|+. .|.. .++-.|++|...-  ..++..|++
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~-~~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYR-KHTG-HRPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHH-HHHC-CCCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHH-HcCC-CCCccCCCCCcccCCHHHHHHHHH
Confidence            3599986  98865 5677889985 4544 3567899999863  358888874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.65  E-value=0.3  Score=28.83  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=25.7

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRS-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCC-SSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999998855 55778899754 644 467789988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.49  E-value=0.31  Score=28.83  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=25.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999998855 45778889765 544 466789988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.48  E-value=0.26  Score=29.01  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.6

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|- ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988554 5778889765 644 467789988

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=89.42  E-value=0.33  Score=36.82  Aligned_cols=20  Identities=20%  Similarity=0.571  Sum_probs=8.2

Q ss_pred             ecCCCCccch-hHHHHHhhhh
Q 029136           23 FPCPFCYLEI-EAHMICSHLQ   42 (198)
Q Consensus        23 F~CPfC~e~f-D~~~Lc~H~~   42 (198)
                      |.|+.|+..| ....|..|+.
T Consensus        50 ~~C~~C~~~f~~~~~l~~H~~   70 (190)
T 2i13_A           50 YKCPECGKSFSDKKDLTRHQR   70 (190)
T ss_dssp             EECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCcCchhCCHHHHHHHHH
Confidence            4444444422 2234444443

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.42  E-value=0.31  Score=28.73  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=25.5

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSM-VHTA-EKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH-HTTC-CCSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            49999998865 4567888865 4644 367789988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.39  E-value=0.39  Score=28.39  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=25.5

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQR-VHMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGG-GGGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            499999988654 577888976 4543 466789988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.37  E-value=0.34  Score=28.56  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.4

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GTT-CCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988554 5778889754 543 467789988

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=89.29  E-value=0.39  Score=33.25  Aligned_cols=48  Identities=17%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCccccccc--ccccch--hhhHhhhHhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMV   71 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCP--VCa~~v--~~d~v~Hit~   71 (198)
                      .|.|++  |+..| ....|..|+...+ . .+.-.|+  +|...-  ..++..|+..
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~~~C~~~f~~~~~l~~H~~~   60 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRKHT-G-EKPYQCDFKDCERRFSRSDQLKRHQRR   60 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHHHH-T-TCCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHhhC-C-CCCccCCCCCCcCccCCHHHHHHHHHH
Confidence            366666  66533 4556666665332 2 2345666  566542  2466666654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.26  E-value=0.13  Score=34.20  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             cccCcceeecCCCCccchhHHH-------HHhhhhhhccCC-cccccccccccchhh
Q 029136           15 IDDDVKACFPCPFCYLEIEAHM-------ICSHLQEEHCFE-MKNAVCPLCAANLGK   63 (198)
Q Consensus        15 ~ddd~r~~F~CPfC~e~fD~~~-------Lc~H~~eeH~~e-~k~vVCPVCa~~v~~   63 (198)
                      ..+++...+.||.|.+.+....       +|..|...+-.. ..+..||+|...+..
T Consensus        13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            3456778899999977555321       223344444332 345789999987654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.24  E-value=0.29  Score=29.42  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=27.4

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccccc
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCA   58 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa   58 (198)
                      ..|.|+.|+..| ....|..|+.. |.. .++-.|++|.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~   47 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSS   47 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCC
Confidence            459999999865 56778899764 543 4678899996

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.26  Score=29.27  Aligned_cols=34  Identities=12%  Similarity=0.077  Sum_probs=25.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTG-QRPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHS-CCCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678888765 544 366789988

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=88.99  E-value=0.37  Score=36.55  Aligned_cols=49  Identities=20%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             ecCC--CCcc-chhHHHHHhhhhhhccCCcccccc--cccccch--hhhHhhhHhh
Q 029136           23 FPCP--FCYL-EIEAHMICSHLQEEHCFEMKNAVC--PLCAANL--GKDAAEHFMV   71 (198)
Q Consensus        23 F~CP--fC~e-~fD~~~Lc~H~~eeH~~e~k~vVC--PVCa~~v--~~d~v~Hit~   71 (198)
                      |.|+  .|+. -.....|..|+...|....+.-.|  ++|...-  ..++..|+++
T Consensus        73 ~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A           73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG
T ss_pred             eeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH
Confidence            5555  5554 223445555555555444444555  5555432  2355555543

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.96  E-value=0.35  Score=28.47  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=25.2

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|- ...|..|+. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHT-TTTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            499999988554 567888976 4543 467789988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.95  E-value=0.35  Score=28.53  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=25.3

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRI-HTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988554 5678889654 644 467889998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.93  E-value=0.33  Score=28.49  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=25.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999998855 45678889754 544 467789988

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=88.90  E-value=0.23  Score=36.60  Aligned_cols=45  Identities=24%  Similarity=0.544  Sum_probs=29.6

Q ss_pred             cccccccccC-cceeecCCCCcc--chhHHHHHhhhhhhccCCcccccccccccchh
Q 029136            9 IVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus         9 ~~de~e~ddd-~r~~F~CPfC~e--~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      .++|++-|++ ...+|+|| |+.  .+....|-..        .--+.||-|+-++.
T Consensus        16 ~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I~   63 (83)
T 1wge_A           16 EIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLIIK   63 (83)
T ss_dssp             EGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEEE
T ss_pred             EHHHceEccCCCEEEEeCC-CCCEEEECHHHHhCC--------CEEEECCCCceEEE
Confidence            4566665433 45689999 976  5666666421        12578999998764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.85  E-value=0.27  Score=29.05  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=25.6

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            499999988554 5678889765 543 466789988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.83  E-value=0.34  Score=28.54  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT-TTSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHH-HhCC-CCCCCCCCC
Confidence            49999998855 4577888975 4544 467889988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=88.76  E-value=0.29  Score=28.96  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=25.5

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|- ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999988554 5778889765 543 467889988

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.34  Score=28.65  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=25.3

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFR-EKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHS-TTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            499999998554 5678889765 543 466789988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.65  E-value=0.29  Score=28.85  Aligned_cols=34  Identities=21%  Similarity=0.166  Sum_probs=25.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSC-CCCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678888754 644 467789988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.63  E-value=0.39  Score=28.18  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=25.4

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999998855 45678889754 644 467789988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.61  E-value=0.35  Score=28.51  Aligned_cols=34  Identities=15%  Similarity=0.028  Sum_probs=25.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678888764 543 467789988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.59  E-value=0.3  Score=28.80  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=25.4

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|++|+..|. ...|..|+. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQR-VHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGG-GGSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            499999988554 567888975 4544 467789988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.46  E-value=0.36  Score=28.35  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999998855 45678889754 544 466789988

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.26  E-value=0.49  Score=27.84  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=25.1

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            499999988554 5678889764 543 466789988

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=88.23  E-value=0.17  Score=37.85  Aligned_cols=47  Identities=23%  Similarity=0.504  Sum_probs=30.7

Q ss_pred             ccccccccccC-cceeecCCCCcc--chhHHHHHhhhhhhccCCcccccccccccchhh
Q 029136            8 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus         8 ~~~de~e~ddd-~r~~F~CPfC~e--~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      +.++|++-|++ ...+|+|| ||.  .+....|-..        .--+.||-|+-.+..
T Consensus         8 V~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~g--------e~iv~C~sCSL~IkV   57 (89)
T 2jr7_A            8 VEIEDFQYDEDSETYFYPCP-CGDNFSITKEDLENG--------EDVATCPSCSLIIKV   57 (89)
T ss_dssp             EETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHHT--------CCEEECTTTCCEEEE
T ss_pred             EEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhCC--------CEEEECCCCccEEEE
Confidence            34566664333 35689999 976  6666666421        125789999998653

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.10  E-value=0.27  Score=29.10  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=24.6

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTR-EKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHH-CCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            48999998854 45678888765 443 356789888

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.98  E-value=0.45  Score=27.75  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988554 5778889765 543 466789988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=87.94  E-value=0.49  Score=27.94  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678889654 554 466789988

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=87.86  E-value=0.6  Score=32.71  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=37.4

Q ss_pred             eeecCCCCccch-hHHHHHhhhhhhccCCcccccccc--cccch--hhhHhhhHhhhhh
Q 029136           21 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        21 ~~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--~~d~v~Hit~qH~   74 (198)
                      ..|.|+.|+..| ....|..|+.. |.. .+.-.|++  |...-  ..++..|++..++
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   89 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLV-HTG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG   89 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG-TSC-CCCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH-cCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            359999998855 56788899875 433 45678987  98863  3688889865443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.59  E-value=0.45  Score=32.88  Aligned_cols=50  Identities=14%  Similarity=0.382  Sum_probs=37.2

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.| .|+..| ....|..|+...+.  .+.-.|++|...-  ..++..|+...++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHHHSC--CCSEECTTTSCEESSSHHHHHHHTTTCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHHcCC--CcCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            4999 898855 56789999886443  3567999999864  3689999865443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.47  E-value=0.47  Score=27.82  Aligned_cols=34  Identities=15%  Similarity=0.032  Sum_probs=25.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQR-VHMG-EKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT-TTCC-SCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            49999998865 4567888975 4544 466789988

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=87.42  E-value=0.2  Score=33.79  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             cccCcceeecCCCCccchhHHH--HHhh-----hhhhccCCcccccccccccchh
Q 029136           15 IDDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        15 ~ddd~r~~F~CPfC~e~fD~~~--Lc~H-----~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      |++++..+|.||.|.+.+....  -|-|     |..++- +.....||+|...+.
T Consensus         1 g~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~-~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLL   54 (78)
T ss_dssp             CCCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBCS
T ss_pred             CCcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH-HHCcCCCCCCcCCCC
Confidence            4567778899999976443221  1222     233322 223678999998865

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.30  E-value=0.48  Score=27.86  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=24.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TTT-SCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999998855 45678889754 543 466789886

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.25  E-value=0.53  Score=27.69  Aligned_cols=34  Identities=18%  Similarity=-0.008  Sum_probs=25.3

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HMG-QKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HSC-CSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999988554 5678889765 543 466789988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.88  E-value=0.52  Score=27.82  Aligned_cols=34  Identities=15%  Similarity=-0.026  Sum_probs=25.2

Q ss_pred             eecCCCCccchh-HHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~fD-~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..|. ...|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            499999988554 5778889765 543 456789988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.83  E-value=0.42  Score=28.14  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=25.1

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|+.|+..| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRR-VHTG-GKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTH-HHHS-CCCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            49999998854 4567888875 4544 367789988

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.67  E-value=0.21  Score=34.86  Aligned_cols=52  Identities=10%  Similarity=0.004  Sum_probs=36.9

Q ss_pred             ceeecCCCCccch---hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhh
Q 029136           20 KACFPCPFCYLEI---EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   73 (198)
Q Consensus        20 r~~F~CPfC~e~f---D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH   73 (198)
                      +..+.|+.|+..|   ....|..|+.. |.. .++-.|++|...-  ..++..|++..|
T Consensus        48 ~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           48 DNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             SCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             CCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhC
Confidence            3456699998866   66778888755 543 3667899998864  368888885544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.57  E-value=0.61  Score=27.50  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCccccccccc
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   57 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVC   57 (198)
                      .|.|++|+..| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999998855 45678888764 543 466789886

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=86.14  E-value=0.89  Score=32.02  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=28.7

Q ss_pred             cCcceeecCCCCc------------cchhHHHHHhhhhhhccCCcccccccccccchhh
Q 029136           17 DDVKACFPCPFCY------------LEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus        17 dd~r~~F~CPfC~------------e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      .++..+|.||-|.            -.|+...+..|+..       +..||+|......
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   60 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQMLTE   60 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBCCG
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCCCh
Confidence            4566789998864            34677777777763       4689999987653

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=85.54  E-value=0.46  Score=35.01  Aligned_cols=46  Identities=24%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             ccccccccccC-cceeecCCCCcc--chhHHHHHhhhhhhccCCcccccccccccchh
Q 029136            8 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus         8 ~~~de~e~ddd-~r~~F~CPfC~e--~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      +.++|++-|++ -..+|+|| |+.  .+....|-..        ---+.||-|+-++.
T Consensus         8 v~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I~   56 (83)
T 1yop_A            8 IEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMID   56 (83)
T ss_dssp             CBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHTT--------CCEEECSSSCCEEE
T ss_pred             EEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhCC--------CEEEECCCCccEEE
Confidence            44666654433 34689999 976  6666666321        22478999999765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.47  E-value=0.34  Score=30.56  Aligned_cols=43  Identities=14%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             cccCcceeecCCCCccchhHH-------HHHhhhhhhccCC-ccccccccc
Q 029136           15 IDDDVKACFPCPFCYLEIEAH-------MICSHLQEEHCFE-MKNAVCPLC   57 (198)
Q Consensus        15 ~ddd~r~~F~CPfC~e~fD~~-------~Lc~H~~eeH~~e-~k~vVCPVC   57 (198)
                      ..++++..+.||.|.+.+...       ..|..|....-.. .++..||+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345677789999997755432       1223334433222 245678887

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=85.45  E-value=0.91  Score=30.62  Aligned_cols=51  Identities=20%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             ecCCC--Cccchh-HHHHHhhhhhhccCCc-----cccccc--ccccc--hhhhHhhhHhhhh
Q 029136           23 FPCPF--CYLEIE-AHMICSHLQEEHCFEM-----KNAVCP--LCAAN--LGKDAAEHFMVQH   73 (198)
Q Consensus        23 F~CPf--C~e~fD-~~~Lc~H~~eeH~~e~-----k~vVCP--VCa~~--v~~d~v~Hit~qH   73 (198)
                      |.|-.  |.+.|+ ...|+.|+.++|-...     ++-+|.  -|...  ....|+.||++.|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            34444  777554 5669999999996543     356776  77764  3358999998876

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=84.58  E-value=0.53  Score=30.23  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             eecCCCCccchhHHHHHhhhhhhccCCcccccccccccc
Q 029136           22 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   60 (198)
Q Consensus        22 ~F~CPfC~e~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~   60 (198)
                      .|.||.|+..|....-.   ...|.. .++-.|++|...
T Consensus        14 ~~~C~~C~k~F~~~~~l---~~~H~~-~k~~~C~~C~k~   48 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEAN---QLFDPM-TGTFRCTFCHTE   48 (62)
T ss_dssp             EEECSSSCCEEEHHHHH---HHEETT-TTEEBCSSSCCB
T ss_pred             CccCCCCCchhccHHHh---HhhcCC-CCCEECCCCCCc
Confidence            49999999877664422   255654 467899999875

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=84.40  E-value=0.26  Score=33.05  Aligned_cols=48  Identities=19%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             ccCcceeecCCCCccchhHH-------HHHhhhhhhccCC-----cccccccccccchhh
Q 029136           16 DDDVKACFPCPFCYLEIEAH-------MICSHLQEEHCFE-----MKNAVCPLCAANLGK   63 (198)
Q Consensus        16 ddd~r~~F~CPfC~e~fD~~-------~Lc~H~~eeH~~e-----~k~vVCPVCa~~v~~   63 (198)
                      .+++...+.||.|.+.+...       .+|..|..++-..     .....||+|...+..
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            35677789999997755542       1233344444332     236789999988764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=83.24  E-value=1.3  Score=30.53  Aligned_cols=51  Identities=16%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhhhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|++  |+..| ....|..|+...+  ..++-.|++|...-  ..++..|+++.++
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRRHT--GVKPFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH--CCCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHcC--CCCCccCCccCchhCCHHHHHHHHHHhcC
Confidence            599995  98855 5678999988644  24567899999864  4689999875443

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.01  E-value=0.18  Score=34.50  Aligned_cols=48  Identities=21%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             ccccCcceeecCCCCccchhHHH--HHhh-----hhhhccCCcccccccccccchhh
Q 029136           14 EIDDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus        14 e~ddd~r~~F~CPfC~e~fD~~~--Lc~H-----~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      +++++....+.||-|.+.+....  -|-|     |....-  .+...||+|...+..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A            7 GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF--RATPRCYICDQPTGG   61 (81)
T ss_dssp             CCSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH--HHCSBCSSSCCBCCS
T ss_pred             CCcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH--HCCCcCCCcCccccc
Confidence            34556677899999977554321  1333     333222  125689999998763

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=82.89  E-value=0.69  Score=24.16  Aligned_cols=26  Identities=19%  Similarity=0.489  Sum_probs=18.3

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccC
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCF   47 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~   47 (198)
                      .|.|+.|+..| ....|..|+...|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            37899998866 456788886656643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=82.79  E-value=0.18  Score=33.91  Aligned_cols=48  Identities=19%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             ccCcceeecCCCCccchhHHH--HHhh-----hhhhccCC----cccccccccccchhh
Q 029136           16 DDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFE----MKNAVCPLCAANLGK   63 (198)
Q Consensus        16 ddd~r~~F~CPfC~e~fD~~~--Lc~H-----~~eeH~~e----~k~vVCPVCa~~v~~   63 (198)
                      .+++...+.||-|.+.+....  -|-|     |...+-..    .....||+|...+..
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            355677899999977554321  1333     33332222    236789999887664

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.70  E-value=0.33  Score=31.52  Aligned_cols=20  Identities=15%  Similarity=0.496  Sum_probs=14.9

Q ss_pred             ccccCcceeecCCCCccchh
Q 029136           14 EIDDDVKACFPCPFCYLEIE   33 (198)
Q Consensus        14 e~ddd~r~~F~CPfC~e~fD   33 (198)
                      +..+++...+.||.|.+.+.
T Consensus        12 ~~~~~~~~~~~C~IC~~~~~   31 (63)
T 2ysj_A           12 QFVNKLQEEVICPICLDILQ   31 (63)
T ss_dssp             CCCCCCCCCCBCTTTCSBCS
T ss_pred             HHHHhCccCCCCCcCCchhC
Confidence            34466788899999977554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=82.55  E-value=0.11  Score=36.24  Aligned_cols=47  Identities=23%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             cccCcceeecCCCCccchhH-HHH--Hhh-----hhhhccCCcccccccccccch
Q 029136           15 IDDDVKACFPCPFCYLEIEA-HMI--CSH-----LQEEHCFEMKNAVCPLCAANL   61 (198)
Q Consensus        15 ~ddd~r~~F~CPfC~e~fD~-~~L--c~H-----~~eeH~~e~k~vVCPVCa~~v   61 (198)
                      +++++...|.||-|.+.|.. +.|  |-|     |..++-.......||+|...+
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            34677788999999774432 222  334     444443334457899999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=81.40  E-value=1.4  Score=32.94  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=39.8

Q ss_pred             eecCCCCccch-hHHHHHhhhhhhccCCcccccccccccc--hhhhHhhhHhhhhh
Q 029136           22 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN--LGKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~CPfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~--v~~d~v~Hit~qH~   74 (198)
                      .|.|++|+..| ....|..|.. .|.- .++-.|++|...  -..++..|+...|+
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEI-HHTG-ERRYQCLACGKSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH-HHHT-CCCEEESSSCCEESSHHHHHHHHHHHTC
T ss_pred             CeeCCccCeecccccchhhhcc-ccCC-CccccCCCCCCCcCCHHHHHHHhHHhcC
Confidence            49999999865 4668889975 4654 366899999986  34699999988775

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=81.28  E-value=2.4  Score=28.32  Aligned_cols=49  Identities=18%  Similarity=0.444  Sum_probs=36.2

Q ss_pred             eecCCC--Cccch-hHHHHHhhhhhhccCCcccccccccccch--hhhHhhhHhhh
Q 029136           22 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   72 (198)
Q Consensus        22 ~F~CPf--C~e~f-D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v--~~d~v~Hit~q   72 (198)
                      .|.||+  |+..| ....|..|+.. |.. .++-.|++|...-  ..++..|+++.
T Consensus        45 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           45 PYKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHH-HTS-CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHH-hCC-CCCeECCCCcCccCCHHHHHHHHHHh
Confidence            599986  98855 56788899865 433 3668999999863  46888888643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.99  E-value=0.24  Score=33.24  Aligned_cols=48  Identities=21%  Similarity=0.465  Sum_probs=27.7

Q ss_pred             ccCcceeecCCCCccchhHHH--HHhh-----hhhhccCC----cccccccccccchhh
Q 029136           16 DDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFE----MKNAVCPLCAANLGK   63 (198)
Q Consensus        16 ddd~r~~F~CPfC~e~fD~~~--Lc~H-----~~eeH~~e----~k~vVCPVCa~~v~~   63 (198)
                      .+++...+.||.|.+.+....  -|-|     |...+-..    .....||+|...+..
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            356777899999987654321  1223     22222111    235789999887664

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=80.97  E-value=1.2  Score=33.65  Aligned_cols=51  Identities=18%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             eecC--CCCccch-hHHHHHhhhhhhccCCcccccccc--cccch--hhhHhhhHhhhhh
Q 029136           22 CFPC--PFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   74 (198)
Q Consensus        22 ~F~C--PfC~e~f-D~~~Lc~H~~eeH~~e~k~vVCPV--Ca~~v--~~d~v~Hit~qH~   74 (198)
                      .|.|  +.|+..| ....|..|+.. |.. .++-.||+  |...-  ..++..|+++.++
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGG-GSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            5899  7798844 56788999875 433 46678988  99874  3689999976555

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=80.90  E-value=1.6  Score=31.79  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             cCcceeecCCCCcc------------chhHHHHHhhhhhhccCCcccccccccccchhh
Q 029136           17 DDVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus        17 dd~r~~F~CPfC~e------------~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      .++..+|.||-|.+            .|+...+..|+..       +..||+|......
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   75 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTLTE   75 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBCCT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCCCh
Confidence            44667899998743            4556666666642       4689999987653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.89  E-value=0.51  Score=30.95  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=28.4

Q ss_pred             ccCcceeecCCCCccchhHHH--HHhh-----hhhhccCCcccccccccccchhh
Q 029136           16 DDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus        16 ddd~r~~F~CPfC~e~fD~~~--Lc~H-----~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      .+++...+.||.|.+.+....  -|-|     |....-. ..+..||+|...+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A            9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVK   62 (66)
T ss_dssp             CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred             hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence            356677899999976544221  2333     3333321 345789999987654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=80.58  E-value=0.32  Score=32.77  Aligned_cols=48  Identities=25%  Similarity=0.668  Sum_probs=29.7

Q ss_pred             cccCcceeecCCCCccchhHHH-----HHhhhhhhccCCc---ccccccccccchh
Q 029136           15 IDDDVKACFPCPFCYLEIEAHM-----ICSHLQEEHCFEM---KNAVCPLCAANLG   62 (198)
Q Consensus        15 ~ddd~r~~F~CPfC~e~fD~~~-----Lc~H~~eeH~~e~---k~vVCPVCa~~v~   62 (198)
                      .+++....+.||.|.+.|+...     -|.|.-=.++...   +...||+|...+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A            8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            3455667899999987665321     2666433333321   3468999988754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=80.21  E-value=1.6  Score=31.78  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             cCcceeecCCCCcc-------------chhHHHHHhhhhhhccCCcccccccccccchhh
Q 029136           17 DDVKACFPCPFCYL-------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus        17 dd~r~~F~CPfC~e-------------~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      .++..+|.||-|.+             .|+...+..|+..       +..||+|...+..
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-------~~~cP~~~~~l~~   69 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-------DQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-------SCBCTTTCSBCCT
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-------CCCCCCCCCCCCh
Confidence            45667899998743             3445555555542       4689999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	91.55
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	89.6
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	87.91
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.7
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	87.66
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	80.57
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	80.03

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.55  E-value=0.05  Score=37.57  Aligned_cols=45  Identities=24%  Similarity=0.544  Sum_probs=28.7

Q ss_pred             cccccccccC-cceeecCCCCcc--chhHHHHHhhhhhhccCCcccccccccccchh
Q 029136            9 IVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus         9 ~~de~e~ddd-~r~~F~CPfC~e--~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      .+||++-|+| ...+|+|| |+.  .+-...|-.+        .--+.||-|+-.+.
T Consensus         9 ~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~ik   56 (70)
T d1wgea1           9 EIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLIIK   56 (70)
T ss_dssp             EGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEEE
T ss_pred             EeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEEE
Confidence            4566664444 45799999 986  4444555332        12356999999865

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.60  E-value=0.042  Score=31.30  Aligned_cols=11  Identities=55%  Similarity=1.748  Sum_probs=7.5

Q ss_pred             ecCCCCccchh
Q 029136           23 FPCPFCYLEIE   33 (198)
Q Consensus        23 F~CPfC~e~fD   33 (198)
                      ||||||..+|.
T Consensus         2 ypcp~cfkeft   12 (26)
T d2drpa2           2 YPCPFCFKEFT   12 (26)
T ss_dssp             EECTTTCCEES
T ss_pred             cCCchhhHHhc
Confidence            67777766654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.13  Score=30.19  Aligned_cols=27  Identities=19%  Similarity=0.683  Sum_probs=23.4

Q ss_pred             eecCCCC-ccchhHHHHHhhhhhhccCC
Q 029136           22 CFPCPFC-YLEIEAHMICSHLQEEHCFE   48 (198)
Q Consensus        22 ~F~CPfC-~e~fD~~~Lc~H~~eeH~~e   48 (198)
                      .|.|+|| +..-|..-|-.|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            3789999 56999999999999998754

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.12  Score=34.79  Aligned_cols=45  Identities=24%  Similarity=0.610  Sum_probs=31.1

Q ss_pred             cccccccCcceeecCCCCcc---chhHHHHHhhhhhhccCCcccccccccccchh
Q 029136           11 DETEIDDDVKACFPCPFCYL---EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   62 (198)
Q Consensus        11 de~e~ddd~r~~F~CPfC~e---~fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~   62 (198)
                      ++.+-+.--++.|.||.|..   .+|...|....       ...-.|-+|...|-
T Consensus         3 e~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d~~-------~~~F~C~~C~~el~   50 (62)
T d1vd4a_           3 ETDERDSTNRASFKCPVCSSTFTDLEANQLFDPM-------TGTFRCTFCHTEVE   50 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHHHEETT-------TTEEBCSSSCCBCE
T ss_pred             chhhhccccCCceECCCCCCCcchhhHHHhcCcC-------CCeEEecCCCCEEe
Confidence            33344444589999999965   88888886643       34467888877654

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.66  E-value=0.1  Score=36.93  Aligned_cols=46  Identities=22%  Similarity=0.515  Sum_probs=28.3

Q ss_pred             cccccccc-cCcceeecCCCCccch--hHHHHHhhhhhhccCCcccccccccccchhh
Q 029136            9 IVDETEID-DDVKACFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANLGK   63 (198)
Q Consensus         9 ~~de~e~d-dd~r~~F~CPfC~e~f--D~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~   63 (198)
                      .+||++-| +....+|+|| |+..|  -...|-.+        .--+.||-|+-++..
T Consensus         8 ~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~IrV   56 (82)
T d1ywsa1           8 EIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMIDV   56 (82)
T ss_dssp             ETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEEEE
T ss_pred             EecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEEEE
Confidence            45666543 3345789999 97644  44444332        112469999998653

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.57  E-value=0.53  Score=34.83  Aligned_cols=47  Identities=26%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CcceeecCCCCccc-hhHHHHHhhhhhhccCCcccccccccccchhhhHhhhH
Q 029136           18 DVKACFPCPFCYLE-IEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   69 (198)
Q Consensus        18 d~r~~F~CPfC~e~-fD~~~Lc~H~~eeH~~e~k~vVCPVCa~~v~~d~v~Hi   69 (198)
                      +-.+..+|-||.+. -+...+..||.+.|.|+-..++     .+.+.||.+-|
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~-----~~~~LDfY~~I   58 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMV-----HKHGLEFYGYI   58 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHH-----HHTTCCHHHHH
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCCCHHHHH-----HHcCCCccceE
Confidence            33456779999774 4789999999999999866532     34455666555