Citrus Sinensis ID: 029174

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDRSVKSRYSV
Secondary Structure (PSIPRED)
ccccHHHHcccccccccccccccccccEEEEEEcccccccccccccccEEEEEEccHHHHHHcccccccccccccccEEEEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEEEEcccccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
MATSEEAsataaaevppqsqphklerkwtfwfdniskpkqgaawgssmrkvyTFDTVEEFWCLYEqifkpsrlpmnadfhlfktgiepkwedpecanggkwsvtsnrkaNLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDritysfhddsrrdrsvksrysv
Flexible Loop (DISEMBL)
matseeasataaaevppqsqphkleRKWTFWFDNISkpkqgaawgssMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECanggkwsvtsnrKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAAneaaqmgigkkwkEILDVTDRItysfhddsrrdrsvksrysv
Low Complexity Region (SEG)
MatseeasataaaeVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHddsrrdrsvksrysV
Disordered region (IsUnstruct)
*************************RKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF****************
Disordered Region (DISOPRED)
**********************KLERKWTFWFD**************MRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITY***************YSV
Disordered Region (DISEMBL)
**********************KLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHD**************
Disordered Region (DISPRO)
*****************QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDRS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDRSVKSRYSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q03389	209	Eukaryotic translation in	N/A	no	1.0	0.942	0.669	4e-79
P48600	206	Eukaryotic translation in	yes	no	0.974	0.932	0.663	4e-77
O81482	216	Eukaryotic translation in	N/A	no	0.969	0.884	0.656	5e-76
O04663	198	Eukaryotic translation in	yes	no	0.898	0.893	0.720	3e-73
O81481	218	Eukaryotic translation in	N/A	no	0.974	0.880	0.561	1e-60
P29557	215	Eukaryotic translation in	N/A	no	0.959	0.879	0.538	3e-58
P48599	227	Eukaryotic translation in	no	no	0.878	0.762	0.582	5e-58
O23252	235	Eukaryotic translation in	no	no	0.898	0.753	0.530	9e-54
Q9C7P6	240	Eukaryotic translation in	no	no	0.888	0.729	0.531	6e-52
Q9C7P2	240	Eukaryotic translation in	no	no	0.888	0.729	0.525	1e-51

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  293 bits (751), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 164/209 (78%), Gaps = 12/209 (5%)

Query: 1   MATSEEASATAAAEVPP-----------QSQPHKLERKWTFWFDNISKPKQGAAWGSSMR 49
           MA  E A   AA E P               PHKL+R+WTFW+D  +KPK GAAWG+S++
Sbjct: 1   MAEVEAALPVAATETPEVAAEGDAGAAEAKGPHKLQRQWTFWYDIQTKPKPGAAWGTSLK 60

Query: 50  KVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKA 109
           K YTFDTVEEFWCLY+QIF+PS+L  +ADFHLFK G+EPKWEDPECANGGKW+V S+RK 
Sbjct: 61  KGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKT 120

Query: 110 NLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKE 169
           NLDTMWLET MALIGEQFDE+ EICGVVASVRQRQDKL+LWTKTA+NEA Q+ IGKKWKE
Sbjct: 121 NLDTMWLETCMALIGEQFDESQEICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKE 180

Query: 170 ILDVTDRITYSFHDDSRRDR-SVKSRYSV 197
           ++D  D++ YSFHDDSR  + S   RY+V
Sbjct: 181 VIDYNDKMVYSFHDDSRSQKPSRGGRYTV 209

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Triticum aestivum (taxid: 4565)

>sp|P48600|IF4E2_ORYSJ Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 134/202 (66%), Positives = 162/202 (80%), Gaps = 10/202 (4%)

Query: 6   EASATAAAEVP---------PQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDT 56
           EA+  AAAE P             PHKL R+W FW+D  SKPK GAAWG+S+RK YTFDT
Sbjct: 5   EAAPIAAAETPEVAAAEGAAAAKAPHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDT 64

Query: 57  VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWL 116
           VEEFW LY+QIF+PS++ +NADFHLFK G+EPKWEDPECANGGKW+V  +RK  L+ MWL
Sbjct: 65  VEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWL 124

Query: 117 ETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDR 176
           ET+MALIGEQFDE++EICGVVASVRQR DKLALWT+TA+NEA Q+ IGKKWKEI+D  D+
Sbjct: 125 ETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVDYNDK 184

Query: 177 ITYSFHDDSRRDR-SVKSRYSV 197
           + YSFHDD++R++ S   RY+V
Sbjct: 185 MVYSFHDDAKREKPSRGGRYNV 206

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  283 bits (724), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 130/198 (65%), Positives = 160/198 (80%), Gaps = 7/198 (3%)

Query: 1   MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEF 60
           +A  E  +AT A        PHKL R+WTFW+D  +K K GAAWG+S++K YTFDTVEEF
Sbjct: 25  VAAPEAGAATEA------KGPHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEF 78

Query: 61  WCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMM 120
           W +Y+QIF+PS+L  NADFHLFK G+EPKWEDPECANGGKW+V  NRKA  +TMWLET+M
Sbjct: 79  WSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLM 138

Query: 121 ALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYS 180
           ALIGEQFDE ++ICG+VASVR R DKLALWT+TA+NEA Q+ IGKKWK+++D  D+ITY+
Sbjct: 139 ALIGEQFDETEDICGIVASVRARGDKLALWTRTASNEAVQVNIGKKWKDVIDYNDKITYT 198

Query: 181 FHDDSRRDR-SVKSRYSV 197
           FHDDS+RD+ S   RY+V
Sbjct: 199 FHDDSKRDKPSRGGRYTV 216

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|O04663|IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E OS=Arabidopsis thaliana GN=EIF(ISO)4E PE=1 SV=2

 Score =  274 bits (700), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 156/186 (83%), Gaps = 9/186 (4%)

Query: 11  AAAEVPP---QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQI 67
           AAAE+P    + QPHKLERKW+FWFDN SK  +GAAWG+S+RK YTFDTVE+FW L+E I
Sbjct: 12  AAAELPATEAEKQPHKLERKWSFWFDNQSK--KGAAWGASLRKAYTFDTVEDFWGLHETI 69

Query: 68  FKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS--VTSNRKANLDTMWLETMMALIGE 125
           F+ S+L  NA+ HLFK G+EPKWEDPECANGGKW+  VT+NRK  LD  WLET+MALIGE
Sbjct: 70  FQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGE 129

Query: 126 QFDEADEICGVVASVR--QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHD 183
           QFDEADEICGVVASVR   +QDKL+LWT+T +NEA  MGIGKKWKEILDVTD+IT++ HD
Sbjct: 130 QFDEADEICGVVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNHD 189

Query: 184 DSRRDR 189
           DSRR R
Sbjct: 190 DSRRSR 195

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV).

Arabidopsis thaliana (taxid: 3702)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 137/194 (70%), Gaps = 2/194 (1%)

Query: 5   EEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLY 64
           EE   T  A  P     H LE  WTFWFDN     + AAWGSS+R ++TF TVEEFW LY
Sbjct: 26  EEGEITDLACAPSPPATHPLEHSWTFWFDNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLY 85

Query: 65  EQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIG 124
             I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R  + DT WL T++A+IG
Sbjct: 86  NNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMIG 144

Query: 125 EQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDD 184
           EQFD  DEICG V SVR +Q+++A+WTK AANEAAQ+ IGK+WKE+LD  D I +  HDD
Sbjct: 145 EQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQVSIGKQWKELLDYKDSIGFIVHDD 204

Query: 185 SRR-DRSVKSRYSV 197
           +++ D+ +K RY+V
Sbjct: 205 AKKMDKGLKERYTV 218

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  224 bits (570), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 137/195 (70%), Gaps = 6/195 (3%)

Query: 4   SEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCL 63
            + +SA AA  +      H LE  WTFWFDN     +  AWGS++  ++TF TVE+FW L
Sbjct: 26  GDGSSAAAAGRI----TAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGL 81

Query: 64  YEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALI 123
           Y  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R  + DT WL T++A+I
Sbjct: 82  YNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMI 140

Query: 124 GEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHD 183
           GEQFD  DEICG V SVRQ+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H+
Sbjct: 141 GEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHE 200

Query: 184 DSRR-DRSVKSRYSV 197
           D++R D+  K+RY+V
Sbjct: 201 DAKRSDKGPKNRYTV 215

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|P48599|IF4E1_ORYSJ Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1

 Score =  223 bits (569), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 102/175 (58%), Positives = 129/175 (73%), Gaps = 2/175 (1%)

Query: 24  LERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFK 83
           LE  WTFWFDN     + A WGSS+R ++TF TVE+FW LY  I  PS+L + ADFH FK
Sbjct: 54  LEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFK 113

Query: 84  TGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQR 143
             IEPKWEDP CANGGKW+ +  R    DTMWL T++A+IGEQFD  DEICG V SVR +
Sbjct: 114 NKIEPKWEDPICANGGKWTFSCGR-GKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGK 172

Query: 144 QDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRR-DRSVKSRYSV 197
           Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  HDD+++ D+ +K+RY+V
Sbjct: 173 QERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV 227

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  209 bits (532), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 132/181 (72%), Gaps = 4/181 (2%)

Query: 17  PQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMN 76
           P+S P  LE  WTFWFDN +   +  +WGSS+R V+TF TVEEFW LY  +  PS+L   
Sbjct: 57  PESHP--LEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHG 114

Query: 77  ADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGV 136
           ADF+ FK  IEPKWEDP CANGGKW++T  ++ + D  WL T++ALIGEQFD  DEICG 
Sbjct: 115 ADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKS-DKSWLYTLLALIGEQFDHGDEICGA 173

Query: 137 VASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRR-DRSVKSRY 195
           V ++R +Q+++++WTK A+NEAAQ+ IGK+WKE LD  + I +  H+D+++ DR+ K+ Y
Sbjct: 174 VVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIHEDAKKLDRNAKNAY 233

Query: 196 S 196
           +
Sbjct: 234 T 234

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P6|IF4E3_ARATH Eukaryotic translation initiation factor 4E-3 OS=Arabidopsis thaliana GN=EIF4E3 PE=1 SV=1

 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 120/177 (67%), Gaps = 2/177 (1%)

Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H  +  WTFWFDN S       WGSS+R +YTF T+EEFW LY  I  P++    AD + 
Sbjct: 65  HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYC 124

Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
           FK  IEPKWEDP CANGGKWS+    KA L+  WL T++AL+GEQFD+ DEICG V + R
Sbjct: 125 FKDKIEPKWEDPICANGGKWSMMF-PKATLECNWLNTLLALVGEQFDQGDEICGAVLNFR 183

Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRR-DRSVKSRYSV 197
            R D+++LWTK AANE AQ+ IGK+WKE+L   + I +  H+D++  DR  K RY+V
Sbjct: 184 ARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVHEDAKTLDRDAKRRYTV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7P2|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 2/177 (1%)

Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H  +  WTFWFDN S       WGSS+R +YTF T+EEFW LY  I  P++    +D + 
Sbjct: 65  HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYC 124

Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
           FK  IEPKWEDP CANGGKW++   R A L++ WL T++AL+GEQFD+ DEICG V + R
Sbjct: 125 FKDKIEPKWEDPICANGGKWTMFFPR-ATLESNWLNTLLALVGEQFDQGDEICGAVLNFR 183

Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRR-DRSVKSRYSV 197
            R D+++LWTK AANE AQ+ IGK+WKE+L   D I +  H+D++  DR  K RY+V
Sbjct: 184 TRGDRISLWTKKAANEEAQLSIGKQWKELLGYNDTIGFIVHEDAKTLDRDAKRRYTV 240

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225433243	204	PREDICTED: eukaryotic translation initia	1.0	0.965	0.791	2e-92
449040966	213	eukaryotic translation initiation factor	0.964	0.892	0.810	5e-92
296083718	190	unnamed protein product [Vitis vinifera]	0.954	0.989	0.824	6e-92
255574923	201	eukaryotic translation initiation factor	1.0	0.980	0.796	1e-91
449458860	203	PREDICTED: eukaryotic translation initia	0.903	0.876	0.837	4e-89
164449261	203	eukaryotic initiation factor iso4E [Cucu	0.903	0.876	0.825	3e-88
290490837	200	translation initiation factor eIF(iso)4E	0.979	0.965	0.75	4e-87
385653727	198	eukaryotic translation initiation factor	0.928	0.924	0.785	1e-86
224110626	179	predicted protein [Populus trichocarpa]	0.898	0.988	0.837	2e-86
67005941	202	eukaryotic initiation factor 4E [Capsicu	0.989	0.965	0.75	3e-86

>gi|225433243|ref|XP_002285444.1| PREDICTED: eukaryotic translation initiation factor 4E-2-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 174/197 (88%)

Query: 1   MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEF 60
           M +      + AA      QPH+LERKWTFWFDN SKPKQGAAWG+S+RK YTF+TVEEF
Sbjct: 8   MESGAAGMESGAAPTEAAKQPHRLERKWTFWFDNQSKPKQGAAWGTSLRKAYTFETVEEF 67

Query: 61  WCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMM 120
           WCLY+QIFKPS+LP NADFHLFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET+M
Sbjct: 68  WCLYDQIFKPSKLPANADFHLFKAGVEPKWEDPECANGGKWTVASSRKGNLDTMWLETLM 127

Query: 121 ALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYS 180
           ALIGEQFDEADEICGVVASVRQRQDKLALWTKTA NEAAQM IG+KWKE++DVTD+ITYS
Sbjct: 128 ALIGEQFDEADEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEVIDVTDKITYS 187

Query: 181 FHDDSRRDRSVKSRYSV 197
           FHDDSRR+RSVK RY+V
Sbjct: 188 FHDDSRRERSVKVRYNV 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449040966|gb|AGE81988.1| eukaryotic translation initiation factor 4E [Prunus domestica]

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 175/190 (92%)

Query: 8   SATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQI 67
           +A A A++ P S PHKLERKWTFWFDN SKPKQGAAWGSS+RK YTF+TV+EFWCLY+Q+
Sbjct: 24  AAAAEAKIQPSSGPHKLERKWTFWFDNQSKPKQGAAWGSSLRKAYTFETVQEFWCLYDQV 83

Query: 68  FKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQF 127
           FKPS+ P NADFHLF+ G+EPKWEDPECANGGKW+VTS  KA+LDTMWLET+MALIGEQF
Sbjct: 84  FKPSKFPPNADFHLFRAGVEPKWEDPECANGGKWTVTSRSKASLDTMWLETLMALIGEQF 143

Query: 128 DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRR 187
           DEADEICGVVASVRQRQDKLALWT+ AANEAAQMGIG+KWKEI+DVTD+ITYSFHDDS+R
Sbjct: 144 DEADEICGVVASVRQRQDKLALWTRNAANEAAQMGIGRKWKEIIDVTDKITYSFHDDSKR 203

Query: 188 DRSVKSRYSV 197
           +RS K RY+V
Sbjct: 204 ERSAKPRYNV 213

Source: Prunus domestica

Species: Prunus domestica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083718|emb|CBI23707.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (876), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 172/188 (91%)

Query: 10  TAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFK 69
           + AA      QPH+LERKWTFWFDN SKPKQGAAWG+S+RK YTF+TVEEFWCLY+QIFK
Sbjct: 3   SGAAPTEAAKQPHRLERKWTFWFDNQSKPKQGAAWGTSLRKAYTFETVEEFWCLYDQIFK 62

Query: 70  PSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDE 129
           PS+LP NADFHLFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET+MALIGEQFDE
Sbjct: 63  PSKLPANADFHLFKAGVEPKWEDPECANGGKWTVASSRKGNLDTMWLETLMALIGEQFDE 122

Query: 130 ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDR 189
           ADEICGVVASVRQRQDKLALWTKTA NEAAQM IG+KWKE++DVTD+ITYSFHDDSRR+R
Sbjct: 123 ADEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEVIDVTDKITYSFHDDSRRER 182

Query: 190 SVKSRYSV 197
           SVK RY+V
Sbjct: 183 SVKVRYNV 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574923|ref|XP_002528368.1| eukaryotic translation initiation factor 4e, putative [Ricinus communis] gi|223532236|gb|EEF34040.1| eukaryotic translation initiation factor 4e, putative [Ricinus communis]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/201 (79%), Positives = 177/201 (88%), Gaps = 4/201 (1%)

Query: 1   MATSEEASATAAAEV----PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDT 56
           MAT      T A E+    P  +Q HKLERKWTFWFDN SKPKQGAAWG+S+RKVYTFDT
Sbjct: 1   MATETAIEGTTATEIGTENPAPAQQHKLERKWTFWFDNQSKPKQGAAWGTSLRKVYTFDT 60

Query: 57  VEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWL 116
           VEEFWCLY+QIFKPS+LP +ADFHLFK G+EPKWEDPECANGGKWSVT  RKA LDTMWL
Sbjct: 61  VEEFWCLYDQIFKPSKLPASADFHLFKAGVEPKWEDPECANGGKWSVTCGRKALLDTMWL 120

Query: 117 ETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDR 176
           ET+MALIGEQFD++DEICGVVASVR R DKLALWT+TA NEAAQMG+GKKWKEI+DVTD+
Sbjct: 121 ETLMALIGEQFDDSDEICGVVASVRPRGDKLALWTRTATNEAAQMGVGKKWKEIIDVTDK 180

Query: 177 ITYSFHDDSRRDRSVKSRYSV 197
           ITYSFHDDSRR+RSVKSRY+V
Sbjct: 181 ITYSFHDDSRRERSVKSRYNV 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458860|ref|XP_004147164.1| PREDICTED: eukaryotic translation initiation factor 4E-2-like [Cucumis sativus] gi|449498591|ref|XP_004160578.1| PREDICTED: eukaryotic translation initiation factor 4E-2-like [Cucumis sativus] gi|164449274|gb|ABY56102.1| eukaryotic initiation factor iso4E [Cucumis sativus]

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 149/178 (83%), Positives = 170/178 (95%)

Query: 20  QPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
           Q HKLERKWTFWFDN S+PKQGAAWG+S+RKVYTFDTVEEFWCLY+Q+FKPS+LP NADF
Sbjct: 26  QAHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQLFKPSKLPANADF 85

Query: 80  HLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVAS 139
           HLFKTG+EPKWEDPECANGGKW+VTS+RKANLD MWLET+MALIGEQF+E+DEICGVVAS
Sbjct: 86  HLFKTGVEPKWEDPECANGGKWTVTSSRKANLDNMWLETLMALIGEQFEESDEICGVVAS 145

Query: 140 VRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDRSVKSRYSV 197
           VRQRQDKLALWTKTA NEAAQM IG+KWKEI+DVTD+I++SFH+D RR++S K+RYSV
Sbjct: 146 VRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVTDKISFSFHEDLRREKSAKARYSV 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164449261|gb|ABY56090.1| eukaryotic initiation factor iso4E [Cucumis melo]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 169/178 (94%)

Query: 20  QPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
           Q HKLERKWTFWFDN S+PKQGAAWG+S+RKVYTF+TVEEFWCLY+Q+FKPS+LP NADF
Sbjct: 26  QSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFETVEEFWCLYDQLFKPSKLPANADF 85

Query: 80  HLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVAS 139
           HLFKTG+EPKWEDPECANGGKW+VTS+RKANLD MWLET+MALIGEQF+E+DEICGVVAS
Sbjct: 86  HLFKTGVEPKWEDPECANGGKWTVTSSRKANLDNMWLETLMALIGEQFEESDEICGVVAS 145

Query: 140 VRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDRSVKSRYSV 197
           VRQRQDKLALWTKTA NEAAQM IG+KWKEI+DV D+I++SFH+D RR++S K+RYSV
Sbjct: 146 VRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVNDKISFSFHEDLRREKSAKARYSV 203

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290490837|emb|CBJ34336.1| translation initiation factor eIF(iso)4E [Solanum tuberosum]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/204 (75%), Positives = 178/204 (87%), Gaps = 11/204 (5%)

Query: 1   MATSEEASATAAAEVPP-------QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYT 53
           MAT     AT   E+PP       + QPHKLERKWTFWFDN SKPKQGAAWGSS+RK YT
Sbjct: 1   MATEAPVEAT---EIPPVAAAESVEKQPHKLERKWTFWFDNQSKPKQGAAWGSSLRKAYT 57

Query: 54  FDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDT 113
           F+TVEEFW LY+QIFKPS+L +NADFHLFK GIEPKWEDPECANGGKW+ TS+RKANL+T
Sbjct: 58  FETVEEFWSLYDQIFKPSKLTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLET 117

Query: 114 MWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 173
           MWLET+MAL+GEQFDE+++ICGVVASVR+ QDKL+LWTKTA NEAAQMGIG+KWKEI+D 
Sbjct: 118 MWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIID- 176

Query: 174 TDRITYSFHDDSRRDRSVKSRYSV 197
           T++I+YSFHDDS+R+RS KSRY+V
Sbjct: 177 TEKISYSFHDDSKRERSAKSRYTV 200

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385653727|emb|CBL94692.1| eukaryotic translation initiation factor, partial [Capsicum annuum]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 150/191 (78%), Positives = 175/191 (91%), Gaps = 8/191 (4%)

Query: 14  EVPPQS-------QPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQ 66
           EVPP +       QPHKLERKWTFWFDN SKPKQGAAWGSS++K YTFDTVEEFW LY+Q
Sbjct: 9   EVPPFTAAETAVKQPHKLERKWTFWFDNQSKPKQGAAWGSSLKKAYTFDTVEEFWSLYDQ 68

Query: 67  IFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQ 126
           IFKPS+L +NADFHLFKTGIEPKWEDPECANGGKW+VTS+RKANL+TMWLET+MAL+GEQ
Sbjct: 69  IFKPSKLTVNADFHLFKTGIEPKWEDPECANGGKWTVTSSRKANLETMWLETLMALVGEQ 128

Query: 127 FDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSR 186
           FD++++ICGVVASVR+ QDKL+LWTKTA NEAAQMGIG+KWKEI+D T++I+YSFHDDS+
Sbjct: 129 FDDSEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIID-TEKISYSFHDDSK 187

Query: 187 RDRSVKSRYSV 197
           R+RS KSRY+V
Sbjct: 188 RERSAKSRYTV 198

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110626|ref|XP_002315583.1| predicted protein [Populus trichocarpa] gi|222864623|gb|EEF01754.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 150/179 (83%), Positives = 168/179 (93%), Gaps = 2/179 (1%)

Query: 21  PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
           PHKLERKWTFWFDN SKP QGAAWG+S+RK+Y+FDTVEEFWCLYEQIFKPS+LP+NADFH
Sbjct: 1   PHKLERKWTFWFDNQSKPNQGAAWGTSLRKIYSFDTVEEFWCLYEQIFKPSKLPVNADFH 60

Query: 81  LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASV 140
           LF+ GIEPKWEDP CA GGKWSVTS+ KANLDTMWLET+MALIGEQFDEADEICGVVASV
Sbjct: 61  LFRAGIEPKWEDPVCATGGKWSVTSSGKANLDTMWLETLMALIGEQFDEADEICGVVASV 120

Query: 141 -RQRQDKLALWTKTAANEAAQ-MGIGKKWKEILDVTDRITYSFHDDSRRDRSVKSRYSV 197
            RQRQDKLALWTKTAANEA Q M IG+KWKE++DVT++ITYSFHDDS+R+R+ KSRY+V
Sbjct: 121 RRQRQDKLALWTKTAANEAVQVMSIGRKWKEVIDVTNKITYSFHDDSKRERNAKSRYNV 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|67005941|gb|AAY62607.1| eukaryotic initiation factor 4E [Capsicum annuum] gi|67005943|gb|AAY62608.1| eukaryotic initiation factor 4E [Capsicum annuum] gi|67005945|gb|AAY62609.1| eukaryotic initiation factor 4E [Capsicum annuum]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/204 (75%), Positives = 178/204 (87%), Gaps = 9/204 (4%)

Query: 1   MATSEEASATAAAEVPPQS-------QPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYT 53
           MAT E        EVPP +       QPHKLERKWTFWFDN SKPKQGAAWGSS++K YT
Sbjct: 1   MAT-EAPPPVDTTEVPPFTAAETAVKQPHKLERKWTFWFDNQSKPKQGAAWGSSLKKAYT 59

Query: 54  FDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDT 113
           FDTVEEFW LY+QIFKPS+L +NADFHLFK GIEPKWEDPECANGGKW+VTS+RKANL+T
Sbjct: 60  FDTVEEFWSLYDQIFKPSKLTVNADFHLFKAGIEPKWEDPECANGGKWTVTSSRKANLET 119

Query: 114 MWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 173
           MWLET+MAL+GEQFD++++ICGVVASVR+ QDKL+LWTKTA NEAAQMGIG+KWKEI+D 
Sbjct: 120 MWLETLMALVGEQFDDSEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIID- 178

Query: 174 TDRITYSFHDDSRRDRSVKSRYSV 197
           T++I+YSFHDDS+R+RS KSRY+V
Sbjct: 179 TEKISYSFHDDSKRERSAKSRYTV 202

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
UNIPROTKB|Q03389	209	Q03389 "Eukaryotic translation	0.822	0.775	0.765	1.1e-71
TAIR|locus:2165892	198	LSP1 "LOSS OF SUSCEPTIBILITY T	0.827	0.823	0.727	9.4e-66
TAIR|locus:2117647	235	EIF4E "AT4G18040" [Arabidopsis	0.827	0.693	0.548	2.5e-49
TAIR|locus:2013748	240	AT1G29550 [Arabidopsis thalian	0.812	0.666	0.540	2.6e-47
DICTYBASE|DDB_G0268574	250	eIF4e "eukaryotic translation	0.817	0.644	0.416	9.2e-36
UNIPROTKB|P48597	213	eif4e "Eukaryotic translation	0.827	0.765	0.423	3.6e-34
ZFIN|ZDB-GENE-041121-14	216	eif4eb "eukaryotic translation	0.832	0.759	0.430	5.8e-34
ZFIN|ZDB-GENE-050417-398	230	eif4e1c "eukaryotic translatio	0.832	0.713	0.421	9.5e-34
UNIPROTKB|F1NI97	215	EIF4E "Uncharacterized protein	0.827	0.758	0.411	1.2e-33
UNIPROTKB|D6RBW1	245	EIF4E "Eukaryotic translation	0.796	0.640	0.420	1.2e-33

UNIPROTKB|Q03389 Q03389 "Eukaryotic translation initiation factor isoform 4E-2" [Triticum aestivum (taxid:4565)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 124/162 (76%), Positives = 146/162 (90%)

Query:    21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
             PHKL+R+WTFW+D  +KPK GAAWG+S++K YTFDTVEEFWCLY+QIF+PS+L  +ADFH
Sbjct:    32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query:    81 LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASV 140
             LFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET MALIGEQFDE+ EICGVVASV
Sbjct:    92 LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV 151

Query:   141 RQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
             RQRQDKL+LWTKTA+NEA Q+ IGKKWKE++D  D++ YSFH
Sbjct:   152 RQRQDKLSLWTKTASNEAVQVDIGKKWKEVIDYNDKMVYSFH 193

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165892 LSP1 "LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 123/169 (72%), Positives = 144/169 (85%)

Query:    18 QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNA 77
             + QPHKLERKW+FWFDN SK  +GAAWG+S+RK YTFDTVE+FW L+E IF+ S+L  NA
Sbjct:    22 EKQPHKLERKWSFWFDNQSK--KGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANA 79

Query:    78 DFHLFKTGIEPKWEDPECANGGKWS--VTSNRKANLDTMWLETMMALIGEQFDEADEICG 135
             + HLFK G+EPKWEDPECANGGKW+  VT+NRK  LD  WLET+MALIGEQFDEADEICG
Sbjct:    80 EIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICG 139

Query:   136 VVASVR--QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
             VVASVR   +QDKL+LWT+T +NEA  MGIGKKWKEILDVTD+IT++ H
Sbjct:   140 VVASVRPQSKQDKLSLWTRTKSNEAVLMGIGKKWKEILDVTDKITFNNH 188

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=TAS

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2117647 EIF4E "AT4G18040" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 91/166 (54%), Positives = 120/166 (72%)

Query:    17 PQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMN 76
             P+S P  LE  WTFWFDN +   +  +WGSS+R V+TF TVEEFW LY  +  PS+L   
Sbjct:    57 PESHP--LEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHG 114

Query:    77 ADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGV 136
             ADF+ FK  IEPKWEDP CANGGKW++T  ++ + D  WL T++ALIGEQFD  DEICG 
Sbjct:   115 ADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKS-DKSWLYTLLALIGEQFDHGDEICGA 173

Query:   137 VASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
             V ++R +Q+++++WTK A+NEAAQ+ IGK+WKE LD  + I +  H
Sbjct:   174 VVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNSIGFIIH 219

GO:0000339 "RNA cap binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2013748 AT1G29550 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 87/161 (54%), Positives = 109/161 (67%)

Query:    22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
             H  +  WTFWFDN S       WGSS+R +YTF T+EEFW LY  I  P++    AD + 
Sbjct:    65 HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYC 124

Query:    82 FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
             FK  IEPKWEDP CANGGKWS+    KA L+  WL T++AL+GEQFD+ DEICG V + R
Sbjct:   125 FKDKIEPKWEDPICANGGKWSMMFP-KATLECNWLNTLLALVGEQFDQGDEICGAVLNFR 183

Query:   142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
              R D+++LWTK AANE AQ+ IGK+WKE+L   + I +  H
Sbjct:   184 ARGDRISLWTKNAANEEAQLSIGKQWKELLGYNETIGFIVH 224

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

DICTYBASE|DDB_G0268574 eIF4e "eukaryotic translation initiation factor 4E" [Dictyostelium discoideum (taxid:44689)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 67/161 (41%), Positives = 99/161 (61%)

Query:    22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
             H L+ +W+ W+D  S       W  S++KV +FD+VE+FWC++  +   S L   + +HL
Sbjct:    74 HPLQNRWSLWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHL 133

Query:    82 FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
             FK  IEPKWE      GGKW V    K+  D  WL+++MA +GE FD +DEICG+V + R
Sbjct:   134 FKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSR 193

Query:   142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
             +  DK+++WTKTA +E A   +G   K+IL++   I Y+ H
Sbjct:   194 KNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQTIQYTPH 234

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P48597 eif4e "Eukaryotic translation initiation factor 4E" [Xenopus laevis (taxid:8355)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 72/170 (42%), Positives = 100/170 (58%)

Query:    16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
             P Q   H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct:    27 PDQYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMS 83

Query:    76 NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
               D+ LFK GIEP WED +   GG+W +T N   R+ +LD  WLET+M LIGE FDE +D
Sbjct:    84 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSD 143

Query:   132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
             ++CG V +VR + DK+A+WT    N+ A   IG+ +KE L +  ++   +
Sbjct:   144 DVCGAVVNVRAKGDKIAIWTTEFENKDAVTHIGRVYKERLGLPAKVVIGY 193

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0043234 "protein complex" evidence=IPI

ZFIN|ZDB-GENE-041121-14 eif4eb "eukaryotic translation initiation factor 4eb" [Danio rerio (taxid:7955)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 74/172 (43%), Positives = 100/172 (58%)

Query:    15 VPPQSQ-PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRL 73
             V P+S   H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L
Sbjct:    28 VSPESYIKHPLQNRWCLWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNL 84

Query:    74 PMNADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE- 129
                 D+ LFK GIEP WED     GG+W +T N   RK +LD  WLET++ LIGE FD+ 
Sbjct:    85 MSGCDYSLFKDGIEPMWEDERNKRGGRWLITLNKQQRKYDLDRFWLETLLCLIGEAFDDY 144

Query:   130 ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
             +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L V   +T  +
Sbjct:   145 SDDVCGAVVNVRTKGDKIAIWTADYGNREAVTHIGRVYKERLGVPMNMTIGY 196

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-050417-398 eif4e1c "eukaryotic translation initiation factor 4E family member 1c" [Danio rerio (taxid:7955)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 73/173 (42%), Positives = 101/173 (58%)

Query:    16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
             P Q   H L+ +W  W+    K K   +W  ++R +  FDTVE+FW LY  I +PS+L  
Sbjct:    44 PEQYIKHPLQNRWALWYFKNDKSK---SWTENLRLISKFDTVEDFWALYNHIQQPSKLGF 100

Query:    76 NADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDEADE 132
               D+ LFK GI+P WED     GG+W +T     R  +LD  W+ET++ LIGE FDEA E
Sbjct:   101 GCDYCLFKDGIKPMWEDDRNKLGGRWLMTLSKQQRHNDLDRYWMETLLCLIGESFDEASE 160

Query:   133 -ICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDR--ITYSFH 182
              +CG V +VR + DK+A+WT    N  A M IG+++KE L +  +  I Y  H
Sbjct:   161 DVCGAVVNVRPKGDKIAIWTGNCQNRDAIMTIGQQYKERLSLPSKTLIGYQSH 213

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NI97 EIF4E "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/170 (41%), Positives = 99/170 (58%)

Query:    16 PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
             P Q   H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct:    29 PEQYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 85

Query:    76 NADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDE-AD 131
               D+ LFK GIEP WED +   GG+W +T     R+++LD  WLET++ LIGE FD+ +D
Sbjct:    86 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLTKQQRRSDLDRFWLETLLCLIGESFDDYSD 145

Query:   132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
             ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   +
Sbjct:   146 DVCGAVVNVRTKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGY 195

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 69/164 (42%), Positives = 98/164 (59%)

Query:    22 HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
             H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L    D+ L
Sbjct:    65 HPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 121

Query:    82 FKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVV 137
             FK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V
Sbjct:   122 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 181

Query:   138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
              +VR + DK+A+WT    N  A   IG+ +KE L +  +I   +
Sbjct:   182 VNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGY 225

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N0T5	IF4E_BOVIN	No assigned EC number	0.4	0.9086	0.8248	yes	no
P63074	IF4E_RAT	No assigned EC number	0.3823	0.9796	0.8894	yes	no
P48600	IF4E2_ORYSJ	No assigned EC number	0.6633	0.9746	0.9320	yes	no
P63073	IF4E_MOUSE	No assigned EC number	0.3823	0.9796	0.8894	yes	no
Q03389	IF4E2_WHEAT	No assigned EC number	0.6698	1.0	0.9425	N/A	no
P29338	IF4E_RABIT	No assigned EC number	0.4	0.9086	0.8248	yes	no
O81482	IF4E2_MAIZE	No assigned EC number	0.6565	0.9695	0.8842	N/A	no
O81481	IF4E1_MAIZE	No assigned EC number	0.5618	0.9746	0.8807	N/A	no
O04663	IF4E4_ARATH	No assigned EC number	0.7204	0.8984	0.8939	yes	no
P29557	IF4E1_WHEAT	No assigned EC number	0.5384	0.9593	0.8790	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	5e-83
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	2e-40
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	6e-14

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  242 bits (620), Expect = 5e-83
 Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 2/162 (1%)

Query: 23  KLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLF 82
            L+ KWT W+D      +   +  +++ + TFDTVE+FW LY  I +PS+LP+ +D+HLF
Sbjct: 1   PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHLF 60

Query: 83  KTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQ 142
           K GI+P WEDP   NGGKW++   +  NLD  W E ++ALIGEQFDE+DEICGVV SVR+
Sbjct: 61  KKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLALIGEQFDESDEICGVVLSVRK 120

Query: 143 RQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFH 182
           ++DK+++WTK A+NE A + IGKK KE+L +   D+I Y  H
Sbjct: 121 KEDKISVWTKNASNEEALLRIGKKLKEVLGLPPNDKIEYKPH 162

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score =  136 bits (343), Expect = 2e-40
 Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 8/171 (4%)

Query: 22  HKLERKWTFWFDNISKPKQGA-AWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
           H L   WT WF  +  P+ G  +W   ++ + TF+TVEEFW +   I   SRLP  +D++
Sbjct: 37  HPLAFHWTLWF--LKPPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYN 94

Query: 81  LFKTGIEPKWEDPECANGGKWSVTSNRKA--NLDTMWLETMMALIGEQFDEAD-EICGVV 137
           +F+ GI P+WED    NGGKWS     K    LD +WL T++A IGE  D    EI GVV
Sbjct: 95  VFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVV 154

Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRIT--YSFHDDSR 186
            ++R+   KLA+WT+   N+     IG ++K++L+++D  T  Y  H+ S+
Sbjct: 155 GNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELSDVETLEYKAHESSK 205

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 67.5 bits (165), Expect = 6e-14
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 24/177 (13%)

Query: 17  PQSQPHKLERKWTFWFD-NISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPS---- 71
           P S P  L  KW  W        ++   +    + + +FD+V++FW L+  I +PS    
Sbjct: 33  PLSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLT 92

Query: 72  -----RLPMNADFH------LFKTGIEPKWEDPECANGG----KWSVTSNRKANLDTMWL 116
                R   +   H      +FK GI+P WEDP  A GG    ++  T      +D  W 
Sbjct: 93  GKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWN 152

Query: 117 ETMMALIGEQFDEADEICGV----VASVRQRQDKLALWTKTAANEAAQMGIGKKWKE 169
             ++ALIG   + +  I G+      S R    ++ +W     +++ +  + K+ + 
Sbjct: 153 NLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSDRNQLMKEIET 209

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0
PF08939	243	DUF1917: Domain of unknown function (DUF1917); Int	95.63

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-60  Score=391.25  Aligned_cols=184  Identities=47%  Similarity=0.917  Sum_probs=171.0

Q ss_pred             cccCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCC
Q 029174           11 AAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKW   90 (197)
Q Consensus        11 ~~~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~W   90 (197)
                      .+...|+....|||++.|||||..+.++   ..|++.|++|.+|+|||+||++|++|++|+.|+.+++|++||+||+|||
T Consensus        24 ~~~~~~~~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmW  100 (212)
T KOG1670|consen   24 EESAKPENHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMW  100 (212)
T ss_pred             hhccCcccccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccc
Confidence            3344566667899999999999998664   3899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEcCC--CCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 029174           91 EDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWK  168 (197)
Q Consensus        91 EDp~N~nGG~~~i~~~~--k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk  168 (197)
                      |||+|.|||||.+.+.+  ++.+|.+|.++||++|||+|+++++|||+|+++|+++++|+||++++.|++.+..|+..+|
T Consensus       101 ED~~N~~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~IG~~~K  180 (212)
T KOG1670|consen  101 EDPANKNGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLRIGRVLK  180 (212)
T ss_pred             cCccccCCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHHHHHHHH
Confidence            99999999999999984  4579999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCC-ceeeEeCCcccc--CCCccceeEC
Q 029174          169 EILDVTD-RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       169 ~~L~l~~-~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                      ++|++++ .|.|..|.++..  ++.+|++|+|
T Consensus       181 e~L~~~~~~i~y~~H~ds~~k~~s~~K~~~tv  212 (212)
T KOG1670|consen  181 EVLGLPRDVIGYQLHKDSSKKSGSTAKNRYTV  212 (212)
T ss_pred             HHhCCCcceEEEEechhhHhhcCCcccceecC
Confidence            9999995 999999999986  6667999986

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=1.6e-52  Score=337.09  Aligned_cols=160  Identities=48%  Similarity=0.956  Sum_probs=147.0

Q ss_pred             CCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcEEE
Q 029174           23 KLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS  102 (197)
Q Consensus        23 ~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~~~  102 (197)
                      ||+++|||||+......+.++|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+|+
T Consensus         1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~   80 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI   80 (165)
T ss_dssp             EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred             CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence            79999999999654444558999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCC--CchHHHHHHHHHHHhcCCCCCC-CceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC--ce
Q 029174          103 VTSNRK--ANLDTMWLETMMALIGEQFDEA-DEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD--RI  177 (197)
Q Consensus       103 i~~~~k--~~~d~~We~lll~~Ige~~~~~-~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~--~i  177 (197)
                      |++.++  ..++++|++||+++|||+|+.. ++||||++|+|++.++|+||++++++++.+..|++.++++|++++  .+
T Consensus        81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~~~i~~~i~~~l~~~~~~~~  160 (165)
T PF01652_consen   81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQNRIGKKIKEILNLPPNTKI  160 (165)
T ss_dssp             EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHHHHHHHHHHHHHTTTTTSEE
T ss_pred             EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHHHHHHHHHHHHhCcCCCCeE
Confidence            999843  3899999999999999999865 899999999999999999999999888889999999999999988  78


Q ss_pred             eeEeC
Q 029174          178 TYSFH  182 (197)
Q Consensus       178 ~y~~H  182 (197)
                      +|++|
T Consensus       161 ~y~~H  165 (165)
T PF01652_consen  161 EYKSH  165 (165)
T ss_dssp             EEEEH
T ss_pred             EEecC
Confidence            99998

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=1.8e-50  Score=340.63  Aligned_cols=166  Identities=25%  Similarity=0.517  Sum_probs=145.5

Q ss_pred             CCCCCCCCCceEEEEEcCCCC-ccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcce---------------eee
Q 029174           18 QSQPHKLERKWTFWFDNISKP-KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNAD---------------FHL   81 (197)
Q Consensus        18 ~~~~h~L~~~Wt~w~~~~~~~-~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~---------------~~~   81 (197)
                      ++.+|||+++|||||+.+..+ .+..+|.++|++|++|+|||+||++|+||++||+|+.+++               |||
T Consensus        34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l  113 (233)
T PTZ00040         34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI  113 (233)
T ss_pred             cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence            577899999999999987443 3457899999999999999999999999999999998864               999


Q ss_pred             ecCCCccCCCCCCCCCCcEEEEEcCCC----CchHHHHHHHHHHHhcCCCCCCCceeeEEE----EEeCCCcEEEEecCC
Q 029174           82 FKTGIEPKWEDPECANGGKWSVTSNRK----ANLDTMWLETMMALIGEQFDEADEICGVVA----SVRQRQDKLALWTKT  153 (197)
Q Consensus        82 FK~gI~P~WEDp~N~nGG~~~i~~~~k----~~~d~~We~lll~~Ige~~~~~~~I~Gi~~----s~R~~~~~isIW~~~  153 (197)
                      ||+||+||||||+|++||+|++++.++    +.+|++|++|||++|||+|+.+++||||++    |+|++.+||+||+++
T Consensus       114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~  193 (233)
T PTZ00040        114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN  193 (233)
T ss_pred             ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence            999999999999999999999999632    468999999999999999998899999996    667788999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhC--CC------CceeeEeCC
Q 029174          154 AANEAAQMGIGKKWKEILD--VT------DRITYSFHD  183 (197)
Q Consensus       154 ~~~~~~~~~I~~~lk~~L~--l~------~~i~y~~H~  183 (197)
                      +++++.+.+|++.++++|.  ++      +++.-++|.
T Consensus       194 ~~d~~~~~~i~~~i~~~l~~~l~~~~~~~~~~~~~~h~  231 (233)
T PTZ00040        194 LGDQSDRNQLMKEIETCMARRLDGSSGFPPKFDLKSHS  231 (233)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCcceecCCcceeeccc
Confidence            9999888999999998763  22      255666665

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.7e-51  Score=327.31  Aligned_cols=176  Identities=35%  Similarity=0.691  Sum_probs=165.3

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174           15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE   94 (197)
Q Consensus        15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~   94 (197)
                      +-.+...|||++..+|||........+++|++++++|++|.|||+||++|.||++|+.|+...++||||+||+|+|||++
T Consensus        23 ~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~a  102 (208)
T KOG1669|consen   23 RVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKA  102 (208)
T ss_pred             ccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcC
Confidence            34466789999999999998765556799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCC
Q 029174           95 CANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVT  174 (197)
Q Consensus        95 N~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~  174 (197)
                      |.|||+|+|+++ |+.+.++||+||++++||+|..+++|||.|+|+|.++++|+||+++.++......|++.||..|+||
T Consensus       103 N~nGgkWiirlk-K~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~~irdtLk~~L~lp  181 (208)
T KOG1669|consen  103 NCNGGKWIIRLK-KGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTGRIRDTLKRVLELP  181 (208)
T ss_pred             CCCCCeEEEEeh-HHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHHHHHHHHHHHhcCC
Confidence            999999999997 8999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             C--ceeeEeCCccccCCCc
Q 029174          175 D--RITYSFHDDSRRDRSV  191 (197)
Q Consensus       175 ~--~i~y~~H~~~~~~~~~  191 (197)
                      .  .++||.|.+++++.++
T Consensus       182 ~~~vmeYK~H~~~Lr~~~s  200 (208)
T KOG1669|consen  182 FNTVMEYKNHDDSLRDHSS  200 (208)
T ss_pred             cceEEEecchhhhhhcccc
Confidence            8  7899999999985443

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-44  Score=291.80  Aligned_cols=167  Identities=39%  Similarity=0.795  Sum_probs=153.1

Q ss_pred             CCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCC
Q 029174           18 QSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECAN   97 (197)
Q Consensus        18 ~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~n   97 (197)
                      +...|||+..|||||..+...+ .+.|++.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|.|
T Consensus        33 f~~~hpl~~~wtlw~l~p~e~g-~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~  111 (217)
T COG5053          33 FMNKHPLAFHWTLWFLKPPEDG-LESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN  111 (217)
T ss_pred             HhhcCccccceEEEEecCCccc-hhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence            3456999999999999986543 245999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCC--CchHHHHHHHHHHHhcCCCC-CCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCC
Q 029174           98 GGKWSVTSNRK--ANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVT  174 (197)
Q Consensus        98 GG~~~i~~~~k--~~~d~~We~lll~~Ige~~~-~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~  174 (197)
                      ||+|.+.++.+  ...+++|...++++|||+++ .+.+|||||++.|++.++|+||++++.+.+.+.+|+.++|..|+|+
T Consensus       112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls  191 (217)
T COG5053         112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELS  191 (217)
T ss_pred             CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhccccc
Confidence            99999999743  35899999999999999997 4778999999999999999999999999999999999999999998


Q ss_pred             C--ceeeEeCCcc
Q 029174          175 D--RITYSFHDDS  185 (197)
Q Consensus       175 ~--~i~y~~H~~~  185 (197)
                      +  .++|++|.-+
T Consensus       192 ~~~tle~k~heSs  204 (217)
T COG5053         192 DVETLEYKAHESS  204 (217)
T ss_pred             ceeEEEecccccc
Confidence            8  7899999633

>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins

Probab=95.63  E-value=0.1  Score=44.89  Aligned_cols=79  Identities=16%  Similarity=0.345  Sum_probs=53.9

Q ss_pred             CCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEe------CCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 029174           96 ANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR------QRQDKLALWTKTAANEAAQMGIGKKWKE  169 (197)
Q Consensus        96 ~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R------~~~~~isIW~~~~~~~~~~~~I~~~lk~  169 (197)
                      .-.|+|+|-++ ++.+|.+|..+.-+++.+.|.     +++-|+.+      .+...|.|.+.|..+.+.+.++.+.|++
T Consensus       148 v~sGKWmlf~~-~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr~  221 (243)
T PF08939_consen  148 VTSGKWMLFPP-PDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLRE  221 (243)
T ss_dssp             ---EEEEEEE--TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHHH
T ss_pred             cccceeEEEcC-HHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33799999998 678999999999999988773     24445541      1236799999999999889999999976


Q ss_pred             HhCCCC----ceeeEe
Q 029174          170 ILDVTD----RITYSF  181 (197)
Q Consensus       170 ~L~l~~----~i~y~~  181 (197)
                      . ++..    .|.||+
T Consensus       222 ~-gl~~~~~~~i~YK~  236 (243)
T PF08939_consen  222 L-GLVDPDGRPIYYKP  236 (243)
T ss_dssp             T-T--S-----EEEEE
T ss_pred             c-CCccccccceeecC
Confidence            6 6544    688886

; PDB: 1ZTP_B 2Q4K_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
2idr_A	177	Crystal Structure Of Translation Initiation Factor		6e-54
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		4e-53
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		7e-53
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		9e-34
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		1e-33
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		1e-33
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		1e-33
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		1e-33
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		2e-32
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		1e-31
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		1e-30
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		7e-30
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		1e-28
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		3e-26
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		2e-21

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 94/161 (58%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H LE  WTFWFDN     +  AWGS++  ++TF TVE+FW LY  I  PS+L + ADFH 
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
           FK  IEPKWEDP CANGGKW+++  R  + DT WL T++A+IGEQFD  DEICG V SVR
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKS-DTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           Q+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct: 121 QKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 161

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 21  PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
           PH LE  WTFWFD  +   + AAWGSSMR +YTF TVEEFW +Y  I  P +L + ADF+
Sbjct: 2   PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFY 61
Query: 81  LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASV 140
            FK  IEPKWEDP CANGGKW+     K   DT WL T++A+IGEQFD  DEICG V +V
Sbjct: 62  CFKHKIEPKWEDPICANGGKWTANY-PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 141 RQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           R R +K+++WTK A+NEAAQ+ IGK+WKE LD  + + + FH
Sbjct: 121 RGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFH 162

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  202 bits (515), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 115/161 (71%), Gaps = 1/161 (0%)
Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H LE  WTFWFDN     +  AWGS++  ++TF TVE+FW LY  I  PS+L + ADFH 
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
           FK  IEPKWEDP  ANGGKW+++  R    DT WL T++A+IGEQFD  DEICG V SVR
Sbjct: 62  FKNKIEPKWEDPISANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120
Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           Q+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H
Sbjct: 121 QKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVH 161

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 31  PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 87
Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D
Sbjct: 88  GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 147
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   + 
Sbjct: 148 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 198

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 31  PEHYIKHPLQNRWALWFFKKDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 87
Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D
Sbjct: 88  GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 147
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   + 
Sbjct: 148 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 198

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 54  PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 110
Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D
Sbjct: 111 GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 170
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   + 
Sbjct: 171 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 221

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 5   PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 61
Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D
Sbjct: 62  GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 121
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   + 
Sbjct: 122 DVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQ 172

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K K    W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 4   PEHYIKHPLQNRWALWFFKNDKSK---TWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 60
Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D
Sbjct: 61  GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 120
Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFH 182
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +  +I   + 
Sbjct: 121 DVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQ 171

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H L   WT W+    + K   +W     ++ +FDTVE+FW LY  I  PS + + +D+ L
Sbjct: 70  HPLMNVWTLWYLENDRSK---SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 82  FKTGIEPKWEDPECANGGKWSVTSNR--KANLDTMWLETMMALIGEQFDEADEICGVVAS 139
           FK  I P WED     GG+W +T N+  K +LD +WL+ ++ LIGE FD +D+ICG V +
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 140 VRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFH 182
           +R + +K+++WT    NE A + IG K ++ L +   + + Y  H
Sbjct: 187 IRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQYQLH 231

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
Query: 22  HKLERKWTFWFDNISKP--KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
           H L  KWT W+   +KP   +  +W   +R V +F TVEEFW + + I +P  LP+ +D+
Sbjct: 37  HPLNTKWTLWY---TKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 80  HLFKTGIEPKWEDPECANGGKWSV-TSNRKANLDTMWLETMMALIGEQFDEAD-EICGVV 137
           H+F+  + P+WED   A GGKWS     + A++D +WL T++A+IGE  DE D +I GVV
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD 175
            S+R+  +K ALWTK+   E   + IG K+K++L +TD
Sbjct: 154 LSIRKGGNKFALWTKSEDKEPL-LRIGGKFKQVLKLTD 190

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 8/164 (4%)
Query: 22  HKLERKWTFWFDNISKP--KQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADF 79
           H L  KWT W+   +KP   +  +W   +R V +F TVEEFW + + I +P  LP+ +D+
Sbjct: 37  HPLNTKWTLWY---TKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 80  HLFKTGIEPKWEDPECANGGKWSV-TSNRKANLDTMWLETMMALIGEQFDEAD-EICGVV 137
           H+F+  + P+WED   A GGKWS     + A++D +WL T++A+IGE  DE D +I GVV
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVV 153
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSF 181
            S+R+  +K ALWTK    E   + IG K+K++L +TD     F
Sbjct: 154 LSIRKGGNKFALWTKCEDKEPL-LRIGGKFKQVLKLTDDGHLEF 196

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H L+  W  W+    K  +   W   +++V  FDTVE+FW LY  I   S L   +D++L
Sbjct: 3   HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKAN---LDTMWLETMMALIGEQF-DEADEICGVV 137
           FK GI+P WED     GG+W V  +++     LD  WLE +MA+IGEQF D  + ICG V
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFH 182
            +VRQ+ DK++LWT+ +  +   + IG+  K  L++  T+ I Y  H
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVH 166

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Query: 15  VPPQSQPHKLERKWTFWFDNIS--KPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSR 72
           V P    H L+  +TFW+   +  +P    ++  +++++ TF +VE+FW  Y  + +P  
Sbjct: 8   VVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGD 67
Query: 73  LPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADE 132
           L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +E
Sbjct: 68  LTGHSDFHLFKEGIKPMWEDDANKNGGKW-IIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 133 ICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV 173
           ICG V SVR ++D +++W KTA+++A    I    + +L++
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL 167

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 6/162 (3%)
Query: 21  PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFH 80
           PH L+  W+++     K      W   + KV TF T+E+FW +     +P  +    D +
Sbjct: 9   PHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 81  LFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADE---ICGVV 137
           +FK+ I PKWEDP+  NGG+W +    + ++D +W E +M LIG  +D  +E   ICG V
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITY 179
              R R  KL++W  +   E   + IG++ KE L++ D I +
Sbjct: 126 FQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYF 167

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 15  VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLP 74
           +PP+     L   WTFW D        A   S+++K+YT  TV+ FW +Y  I   + LP
Sbjct: 23  LPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLP 82
Query: 75  MNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEA---- 130
           +   +HL +    P WE+   A GG W +   + +   T+W E ++A IGEQF +     
Sbjct: 83  LRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDST-STVWKELLLATIGEQFTDCAAAD 141
Query: 131 DEICGVVASVRQRQDKLALWTKTAA 155
           DEI GV  SVR R+D + +W   A+
Sbjct: 142 DEIIGVSVSVRDREDVVQVWNVNAS 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	6e-73
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	2e-65
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	6e-62
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	5e-60
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	7e-60
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	8e-60
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	5e-59

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  217 bits (553), Expect = 6e-73
 Identities = 99/177 (55%), Positives = 128/177 (72%), Gaps = 2/177 (1%)

Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H LE  WTFWFDN     +  AWGS++  ++TF TVE+FW LY  I  PS+L + ADFH 
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61

Query: 82  FKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVR 141
           FK  IEPKWEDP CANGGKW+++   +   DT WL T++A+IGEQFD  DEICG V SVR
Sbjct: 62  FKNKIEPKWEDPICANGGKWTIS-CGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVR 120

Query: 142 QRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRD-RSVKSRYSV 197
           Q+Q+++A+WTK AANEAAQ+ IGK+WKE LD  D I +  H+D++R  +  K+RY+V
Sbjct: 121 QKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHEDAKRSDKGPKNRYTV 177

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  198 bits (505), Expect = 2e-65
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 13  AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSR 72
             +     PH L+  W+++     + ++   W   + KV TF T+E+FW +     +P  
Sbjct: 1   GPLGSPEFPHPLQDSWSYYLF---QFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPRE 57

Query: 73  LPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFD---E 129
           +    D ++FK+ I PKWEDP+  NGG+W +    + ++D +W E +M LIG  +D   E
Sbjct: 58  ITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEE 117

Query: 130 ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYSFHDDSRRDR 189
             +ICG V   R R  KL++W  +   E   + IG++ KE L++ D I +    D R   
Sbjct: 118 DRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYFQPVSDQRSQT 177

Query: 190 S----VKSRYSV 197
                   +Y +
Sbjct: 178 RGSDICTGKYEI 189

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  189 bits (482), Expect = 6e-62
 Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 11/190 (5%)

Query: 16  PPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPM 75
           P     H L+ +W  WF    K  +   W +++R +  FDTVE+FW LY  I   S L  
Sbjct: 4   PEHYIKHPLQNRWALWFF---KNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMP 60

Query: 76  NADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQFDE-AD 131
             D+ LFK GIEP WED +   GG+W +T     R+++LD  WLET++ LIGE FD+ +D
Sbjct: 61  GCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSD 120

Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFHDDS--RR 187
           ++CG V +VR + DK+A+WT    N  A   IG+ +KE L +     I Y  H D+  + 
Sbjct: 121 DVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKS 180

Query: 188 DRSVKSRYSV 197
             + K+R+ V
Sbjct: 181 GSTTKNRFVV 190

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  185 bits (470), Expect = 5e-60
 Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 7/190 (3%)

Query: 14  EVPPQSQPHKLERKWTFWFD--NISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPS 71
            V P    H L+  +TFW+      +P    ++  +++++ TF +VE+FW  Y  + +P 
Sbjct: 7   AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 66

Query: 72  RLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEAD 131
            L  ++DFHLFK GI+P WED    NGGKW +   RK      W   ++A++GEQF   +
Sbjct: 67  DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL-RKGLASRCWENLILAMLGEQFMVGE 125

Query: 132 EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFHDDSRRDR 189
           EICG V SVR ++D +++W KTA+++A    I    + +L++     + Y  H DS +  
Sbjct: 126 EICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMP 185

Query: 190 S--VKSRYSV 197
                 R   
Sbjct: 186 GRLGPQRLLF 195

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  185 bits (471), Expect = 7e-60
 Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 11/202 (5%)

Query: 4   SEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCL 63
            E+  +      P     H L+ +W  WF    K  +   W +++R +  FDTVE+FW L
Sbjct: 19  EEKTESNQEVANPEHYIKHPLQNRWALWFF---KNDKSKTWQANLRLISKFDTVEDFWAL 75

Query: 64  YEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMM 120
           Y  I   S L    D+ LFK GIEP WED +   GG+W +T     R+++LD  WLET++
Sbjct: 76  YNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLL 135

Query: 121 ALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRI 177
            LIGE FD+ +D++CG V +VR + DK+A+WT    N  A   IG+ +KE L +     I
Sbjct: 136 CLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVI 195

Query: 178 TYSFHDDS--RRDRSVKSRYSV 197
            Y  H D+  +   + K+R+ V
Sbjct: 196 GYQSHADTATKSGSTTKNRFVV 217

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  184 bits (468), Expect = 8e-60
 Identities = 71/184 (38%), Positives = 99/184 (53%), Gaps = 11/184 (5%)

Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H L+  W  W+    + K    W   +++V  FDTVE+FW LY  I   S L   +D++L
Sbjct: 3   HPLQCHWALWYLKADRSKD---WEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59

Query: 82  FKTGIEPKWEDPECANGGKWSVT---SNRKANLDTMWLETMMALIGEQ-FDEADEICGVV 137
           FK GI+P WED     GG+W V      R   LD  WLE +MA+IGEQ  D  + ICG V
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119

Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDV--TDRITYSFHDDSRRDRS--VKS 193
            +VRQ+ DK++LWT+ +  +   + IG+  K  L++  T+ I Y  H DS       VK 
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVKP 179

Query: 194 RYSV 197
           R  +
Sbjct: 180 RIVI 183

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  183 bits (465), Expect = 5e-59
 Identities = 67/201 (33%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 1   MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEF 60
           +  +     T  ++       H L  KWT W+   +  K   +W   +R V +F TVEEF
Sbjct: 16  VDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKS-ESWSDLLRPVTSFQTVEEF 74

Query: 61  WCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT-SNRKANLDTMWLETM 119
           W + + I +P  LP+ +D+H+F+  + P+WED   A GGKWS     + A++D +WL T+
Sbjct: 75  WAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTL 134

Query: 120 MALIGEQFDEA-DEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDR-- 176
           +A+IGE  DE   +I GVV S+R+  +K ALWTK+   E   + IG K+K++L +TD   
Sbjct: 135 LAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIGGKFKQVLKLTDDGH 193

Query: 177 ITYSFHDDSRRDRSVKSRYSV 197
           + +  H  +      +   ++
Sbjct: 194 LEFFPHSSANGRHP-QPSITL 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	99.44

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=5.4e-61  Score=400.51  Aligned_cols=180  Identities=37%  Similarity=0.797  Sum_probs=165.9

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174           15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE   94 (197)
Q Consensus        15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~   94 (197)
                      +......|||+++|||||+.+.+ .+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        30 ~~~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~  108 (213)
T 1ap8_A           30 SAHFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEA  108 (213)
T ss_dssp             CCCCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTT
T ss_pred             CCCCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCC
Confidence            44455789999999999999854 34578999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEcC-CCCchHHHHHHHHHHHhcCCCCCCC-ceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhC
Q 029174           95 CANGGKWSVTSN-RKANLDTMWLETMMALIGEQFDEAD-EICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD  172 (197)
Q Consensus        95 N~nGG~~~i~~~-~k~~~d~~We~lll~~Ige~~~~~~-~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~  172 (197)
                      |++||+|+|++. +++.+|++|++|||++|||+|+..+ +|||||+|+|+++++|+||++++ +++.+..|++.|+++|+
T Consensus       109 N~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~  187 (213)
T 1ap8_A          109 NAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPLLRIGGKFKQVLK  187 (213)
T ss_dssp             TTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHHHHHHHHHHHHhC
Confidence            999999999984 3468999999999999999998766 89999999999999999999998 88889999999999999


Q ss_pred             CCC--ceeeEeCCccccCCCccceeEC
Q 029174          173 VTD--RITYSFHDDSRRDRSVKSRYSV  197 (197)
Q Consensus       173 l~~--~i~y~~H~~~~~~~~~~~~~~~  197 (197)
                      +++  .++|++|+++.+ +.+|++|+|
T Consensus       188 l~~~~~i~y~~H~d~~~-~~~k~~~~~  213 (213)
T 1ap8_A          188 LTDDGHLEFFPHSSANG-RHPQPSITL  213 (213)
T ss_dssp             CCSSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred             CCCCCeEEEEEchhhhc-ccCccceEC
Confidence            976  799999999988 788999986

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=3.4e-61  Score=391.76  Aligned_cols=176  Identities=57%  Similarity=1.098  Sum_probs=166.6

Q ss_pred             CCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcE
Q 029174           21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGK  100 (197)
Q Consensus        21 ~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~  100 (197)
                      .|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||+
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~   80 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK   80 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred             CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence            59999999999999866556689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCCceeeE
Q 029174          101 WSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRITYS  180 (197)
Q Consensus       101 ~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~~i~y~  180 (197)
                      |+|++. |+.+|++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.++++|+++..++|+
T Consensus        81 w~i~~~-k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~~~~y~  159 (177)
T 2idr_A           81 WTISCG-RGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFI  159 (177)
T ss_dssp             EEEEEC-TTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCSCCEEE
T ss_pred             EEEEEC-cCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            999997 6789999999999999999998899999999999999999999999999999999999999999997689999


Q ss_pred             eCCcccc-CCCccceeEC
Q 029174          181 FHDDSRR-DRSVKSRYSV  197 (197)
Q Consensus       181 ~H~~~~~-~~~~~~~~~~  197 (197)
                      +|+++.+ .+++|++|+|
T Consensus       160 ~H~d~~~~~~~~k~~~~~  177 (177)
T 2idr_A          160 VHEDAKRSDKGPKNRYTV  177 (177)
T ss_dssp             EGGGGGSCSSSCCCSEEC
T ss_pred             EchhhhhcCCCCccceEC
Confidence            9999988 5577899986

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=6.1e-60  Score=395.23  Aligned_cols=182  Identities=41%  Similarity=0.828  Sum_probs=166.9

Q ss_pred             cCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCC
Q 029174           13 AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWED   92 (197)
Q Consensus        13 ~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WED   92 (197)
                      ...|+....|||+++|||||+.+.+   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|||||
T Consensus        28 ~~~~e~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WED  104 (217)
T 1ipb_A           28 VANPEHYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWED  104 (217)
T ss_dssp             CCCGGGTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTS
T ss_pred             ccCcccccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccC
Confidence            4455666789999999999998753   5789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEcCCC---CchHHHHHHHHHHHhcCCC-CCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 029174           93 PECANGGKWSVTSNRK---ANLDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWK  168 (197)
Q Consensus        93 p~N~nGG~~~i~~~~k---~~~d~~We~lll~~Ige~~-~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk  168 (197)
                      |+|++||+|+|++.+.   ..+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.|+
T Consensus       105 p~N~~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk  184 (217)
T 1ipb_A          105 EKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYK  184 (217)
T ss_dssp             TTTTTCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999843   2469999999999999999 67889999999999999999999999999988999999999


Q ss_pred             HHhCCCC--ceeeEeCCccccC--CCccceeEC
Q 029174          169 EILDVTD--RITYSFHDDSRRD--RSVKSRYSV  197 (197)
Q Consensus       169 ~~L~l~~--~i~y~~H~~~~~~--~~~~~~~~~  197 (197)
                      ++|++++  .++|++|+++.++  +.+|++|+|
T Consensus       185 ~~L~l~~~~~i~y~~H~d~~~~~~s~~~~~~~~  217 (217)
T 1ipb_A          185 ERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV  217 (217)
T ss_dssp             HHHTCCTTCCCEEEEGGGCCCSTTCCCCCSEEC
T ss_pred             HHhCCCCCCeEEEEEchHhhhccCCCCceeeeC
Confidence            9999987  7999999999874  456899986

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=1.6e-59  Score=385.38  Aligned_cols=174  Identities=40%  Similarity=0.831  Sum_probs=159.1

Q ss_pred             CCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcE
Q 029174           21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGK  100 (197)
Q Consensus        21 ~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~  100 (197)
                      .|||+++|||||+.+.+   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||+|++||+
T Consensus         2 ~HpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGk   78 (189)
T 3m94_A            2 RHPLQCHWALWYLKADR---SKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGR   78 (189)
T ss_dssp             CCEEEEEEEEEEECCCS---SSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEE
T ss_pred             CCCCCCcEEEEEECCCC---ccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCE
Confidence            69999999999997643   478999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC---CchHHHHHHHHHHHhcCCCC-CCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC-
Q 029174          101 WSVTSNRK---ANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD-  175 (197)
Q Consensus       101 ~~i~~~~k---~~~d~~We~lll~~Ige~~~-~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~-  175 (197)
                      |+|++++.   +.+|++|++|||++|||+|+ .+++|||||+|+|.++++|+||++++++++.+..|++.+|++|++++ 
T Consensus        79 w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l~~~  158 (189)
T 3m94_A           79 WLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDT  158 (189)
T ss_dssp             EEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTT
T ss_pred             EEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHhCcCCC
Confidence            99999743   36899999999999999995 68999999999999999999999999999999999999999999987 


Q ss_pred             -ceeeEeCCcccc--CCCccceeEC
Q 029174          176 -RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       176 -~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                       .++|++|+++.+  ++.+|++|||
T Consensus       159 ~~i~y~~H~d~~~~~~s~~k~~~~v  183 (189)
T 3m94_A          159 EPIRYEVHKDSSVRTGSMVKPRIVI  183 (189)
T ss_dssp             SCEEEEECC-----CCSCCCCSEEE
T ss_pred             CEEEEEEchHhhhccCCCCceEEEE
Confidence             699999999986  6677999986

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=6.8e-60  Score=387.94  Aligned_cols=180  Identities=41%  Similarity=0.836  Sum_probs=159.9

Q ss_pred             CCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCC
Q 029174           15 VPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPE   94 (197)
Q Consensus        15 ~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~   94 (197)
                      .|+....|||+++|||||+.+.+   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus         3 ~~~~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~   79 (190)
T 1l8b_A            3 NPEHYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEK   79 (190)
T ss_dssp             ------CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTT
T ss_pred             CccccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCC
Confidence            45777899999999999998754   468999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEcCCC---CchHHHHHHHHHHHhcCCC-CCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 029174           95 CANGGKWSVTSNRK---ANLDTMWLETMMALIGEQF-DEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEI  170 (197)
Q Consensus        95 N~nGG~~~i~~~~k---~~~d~~We~lll~~Ige~~-~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~  170 (197)
                      |++||+|+|++.++   ..+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++.+..|++.++++
T Consensus        80 N~~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~  159 (190)
T 1l8b_A           80 NKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKER  159 (190)
T ss_dssp             TTTCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            99999999999742   3579999999999999999 5688999999999999999999999999999999999999999


Q ss_pred             hCCCC--ceeeEeCCcccc--CCCccceeEC
Q 029174          171 LDVTD--RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       171 L~l~~--~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                      |++++  .++|++|+++.+  ++.+|++|+|
T Consensus       160 L~l~~~~~~~y~~H~d~~~~~~~~~~~~~~~  190 (190)
T 1l8b_A          160 LGLPPKIVIGYQSHADTATKSGSTTKNRFVV  190 (190)
T ss_dssp             HTCCTTSCCEEEEHHHHHTC-----CCSEEC
T ss_pred             hCCCCCCeEEEEEcHHHHhccCCCCceeeeC
Confidence            99987  799999999987  4456899986

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=1.2e-59  Score=386.15  Aligned_cols=176  Identities=31%  Similarity=0.718  Sum_probs=162.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCC
Q 029174           19 SQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANG   98 (197)
Q Consensus        19 ~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nG   98 (197)
                      ...|||+++|||||+.+.+   +.+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||.|++|
T Consensus         7 ~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~G   83 (189)
T 3hxi_A            7 EFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENG   83 (189)
T ss_dssp             CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTC
T ss_pred             CccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCC
Confidence            4579999999999998754   3689999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC
Q 029174           99 GKWSVTSNRKANLDTMWLETMMALIGEQF-DEADE--ICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD  175 (197)
Q Consensus        99 G~~~i~~~~k~~~d~~We~lll~~Ige~~-~~~~~--I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~  175 (197)
                      |+|+|++.++..+|++|++|||++|||+| +.+++  |||||+|+|+++++|+||++++++++.+..|++.++++|++++
T Consensus        84 Gkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l~~  163 (189)
T 3hxi_A           84 GRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELED  163 (189)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHHHHHHHHHHHHTCCS
T ss_pred             cEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCcCC
Confidence            99999998544799999999999999999 55667  9999999999999999999999999999999999999999988


Q ss_pred             --ceeeEeCCcccc--CCCccceeEC
Q 029174          176 --RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       176 --~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                        .++|++|+++++  ++.++++|||
T Consensus       164 ~~~i~y~~H~d~~~~~~s~~~~~~~~  189 (189)
T 3hxi_A          164 TIYFQPVSDQRSQTRGSDICTGKYEI  189 (189)
T ss_dssp             CCEEEEHHHHHHCCTTCC-CCCSEEC
T ss_pred             CCeEEEEEchhhhhcCCCCCCceEeC
Confidence              589999999987  4446899997

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=3.8e-58  Score=378.92  Aligned_cols=173  Identities=34%  Similarity=0.730  Sum_probs=160.0

Q ss_pred             CCCCCCCCCceEEEEEcCCC--CccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCC
Q 029174           18 QSQPHKLERKWTFWFDNISK--PKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPEC   95 (197)
Q Consensus        18 ~~~~h~L~~~Wt~w~~~~~~--~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N   95 (197)
                      ....|||+++|||||+....  +....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|
T Consensus        11 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N   90 (195)
T 2jgb_A           11 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDAN   90 (195)
T ss_dssp             CTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTT
T ss_pred             CCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCC
Confidence            44689999999999997532  2245789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC
Q 029174           96 ANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD  175 (197)
Q Consensus        96 ~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~  175 (197)
                      ++||+|+|++. ++.+|++|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++.+..|++.++++|++++
T Consensus        91 ~~GGkw~i~~~-k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~~I~~~lk~~L~l~~  169 (195)
T 2jgb_A           91 KNGGKWIIRLR-KGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPP  169 (195)
T ss_dssp             TTCEEEEEEEC-TTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHHHHHHHHHHHCCCCT
T ss_pred             CCCcEEEEEeC-cccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999997 67899999999999999999989999999999999999999999999999999999999999999987


Q ss_pred             --ceeeEeCCccccCCCc
Q 029174          176 --RITYSFHDDSRRDRSV  191 (197)
Q Consensus       176 --~i~y~~H~~~~~~~~~  191 (197)
                        .++|++|+++.+++++
T Consensus       170 ~~~~~y~~H~d~~~~~~s  187 (195)
T 2jgb_A          170 NTIMEYKTHTDSIKMPGR  187 (195)
T ss_dssp             TCCEEEEEHHHHHHCCC-
T ss_pred             CCeEEEEEchHhhhcCCC
Confidence              6999999999884443

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-57  Score=388.29  Aligned_cols=182  Identities=36%  Similarity=0.809  Sum_probs=163.5

Q ss_pred             cCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCC
Q 029174           13 AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWED   92 (197)
Q Consensus        13 ~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WED   92 (197)
                      ..+++....|||+++|||||+.+.+   ..+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+|||
T Consensus        61 ~~~~~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED  137 (248)
T 4axg_A           61 AVRTEHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWED  137 (248)
T ss_dssp             -----CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSS
T ss_pred             ccCcccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCC
Confidence            4557777889999999999998744   4689999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEcCCC--CchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 029174           93 PECANGGKWSVTSNRK--ANLDTMWLETMMALIGEQFDEADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEI  170 (197)
Q Consensus        93 p~N~nGG~~~i~~~~k--~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~  170 (197)
                      |+|++||+|+|++.+.  ..+|++|++||+++|||+|+.+++||||++|+|++.++|+||++++++++.+..|++.|+++
T Consensus       138 ~~N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~~I~~~lk~~  217 (248)
T 4axg_A          138 AANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDA  217 (248)
T ss_dssp             TTTTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999742  35789999999999999999889999999999999999999999999999999999999999


Q ss_pred             hCCCC--ceeeEeCCcccc--CCCccceeEC
Q 029174          171 LDVTD--RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       171 L~l~~--~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                      |+++.  .++|+.|++++.  ++.+|++|+|
T Consensus       218 L~l~~~~~i~yk~H~ds~~~~~s~~k~~y~v  248 (248)
T 4axg_A          218 LRLGRNNSLQYQLHKDTMVKQGSNVKSIYTL  248 (248)
T ss_dssp             TTCCTTSCEEEEETGGGCCCC--CCCCSEEC
T ss_pred             hCCCCCCeEEEeehhhhhhccCCCCceeEeC
Confidence            99976  799999999975  6667999997

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=99.44  E-value=2.5e-13  Score=114.68  Aligned_cols=97  Identities=13%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             CCCCCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeCC---CcEEEEecCCCCCHHHHHHHHHHHHH
Q 029174           93 PECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQR---QDKLALWTKTAANEAAQMGIGKKWKE  169 (197)
Q Consensus        93 p~N~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~~---~~~isIW~~~~~~~~~~~~I~~~lk~  169 (197)
                      +.|..||||+|.+.+...+|++|+.+++++|+++      +||++|+.|..   ...|+||+.|..+.+.+.+|++.||+
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lre  194 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRA  194 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            5689999999999843789999999999999764      49999999986   79999999999999999999999999


Q ss_pred             HhCCCCceeeEeCCccccCCCccceeE
Q 029174          170 ILDVTDRITYSFHDDSRRDRSVKSRYS  196 (197)
Q Consensus       170 ~L~l~~~i~y~~H~~~~~~~~~~~~~~  196 (197)
                       |++...|.||.|.+...+...+++|.
T Consensus       195 -LGl~~~I~YK~D~~T~~Giy~~n~~~  220 (251)
T 1ztp_A          195 -AGIKCLLTYKPDVYTYLGIYRANRWH  220 (251)
T ss_dssp             -TTCCSCEEEEEHHHHHTTCCSSCSSC
T ss_pred             -cCCCcceeeccchHhhcCCccCCcce
Confidence             99977899999999877666566654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	7e-66
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	5e-58

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  198 bits (505), Expect = 7e-66
 Identities = 74/184 (40%), Positives = 108/184 (58%), Gaps = 11/184 (5%)

Query: 22  HKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHL 81
           H L+ +W  WF    K  +   W +++R +  FDTVE+FW LY  I   S L    D+ L
Sbjct: 2   HPLQNRWALWFF---KNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 58

Query: 82  FKTGIEPKWEDPECANGGKWSVTSN---RKANLDTMWLETMMALIGEQFDE-ADEICGVV 137
           FK GIEP WED +   GG+W +T N   R+++LD  WLET++ LIGE FD+ +D++CG V
Sbjct: 59  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 118

Query: 138 ASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDRIT--YSFHDDS--RRDRSVKS 193
            +VR + DK+A+WT    N  A   IG+ +KE L +  +I   Y  H D+  +   + K+
Sbjct: 119 VNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 178

Query: 194 RYSV 197
           R+ V
Sbjct: 179 RFVV 182

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  179 bits (455), Expect = 5e-58
 Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 7/201 (3%)

Query: 1   MATSEEASATAAAEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEF 60
           +  +     T  ++       H L  KWT W+   +  K   +W   +R V +F TVEEF
Sbjct: 16  VDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKS-ESWSDLLRPVTSFQTVEEF 74

Query: 61  WCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVT-SNRKANLDTMWLETM 119
           W + + I +P  LP+ +D+H+F+  + P+WED   A GGKWS     + A++D +WL T+
Sbjct: 75  WAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTL 134

Query: 120 MALIGEQFDEA-DEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTDR-- 176
           +A+IGE  DE   +I GVV S+R+  +K ALWTK+   E   + IG K+K++L +TD   
Sbjct: 135 LAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKE-PLLRIGGKFKQVLKLTDDGH 193

Query: 177 ITYSFHDDSRRDRSVKSRYSV 197
           + +  H  +   R  +   ++
Sbjct: 194 LEFFPHSSANG-RHPQPSITL 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1ztpa1	234	Basophilic leukemia expressed protein BLES03 {Huma	94.22

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-55  Score=354.64  Aligned_cols=174  Identities=43%  Similarity=0.866  Sum_probs=158.3

Q ss_pred             CCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCCCCCCCCcE
Q 029174           21 PHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGK  100 (197)
Q Consensus        21 ~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WEDp~N~nGG~  100 (197)
                      .|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|+|||+
T Consensus         1 kHpL~~~Wt~w~~~~~~---~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~   77 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGR   77 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEE
T ss_pred             CCCCCCeEEEEEEeCCC---CchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCE
Confidence            49999999999998743   478999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcC---CCCchHHHHHHHHHHHhcCCCC-CCCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHHhCCCC-
Q 029174          101 WSVTSN---RKANLDTMWLETMMALIGEQFD-EADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILDVTD-  175 (197)
Q Consensus       101 ~~i~~~---~k~~~d~~We~lll~~Ige~~~-~~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~L~l~~-  175 (197)
                      |+|+++   .++.++++|++||+++|||+|. ..++||||++|+|++.++|+||++++++++.+..|++.++++|++++ 
T Consensus        78 ~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~~~~~i~~~~~~~L~l~~~  157 (182)
T d1l8ba_          78 WLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPK  157 (182)
T ss_dssp             EEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHHHHHHHHHHHHTCCTT
T ss_pred             EEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCCccHHHHHHHHHHHHHHhCcCCC
Confidence            999996   2467999999999999999995 46789999999999999999999999999889999999999999977 


Q ss_pred             -ceeeEeCCcccc--CCCccceeEC
Q 029174          176 -RITYSFHDDSRR--DRSVKSRYSV  197 (197)
Q Consensus       176 -~i~y~~H~~~~~--~~~~~~~~~~  197 (197)
                       .++|++|+++..  ++.+|+||||
T Consensus       158 ~~~~yk~H~d~~~~~~~~~k~~~~~  182 (182)
T d1l8ba_         158 IVIGYQSHADTATKSGSTTKNRFVV  182 (182)
T ss_dssp             SCCEEEEHHHHHTC-----CCSEEC
T ss_pred             CeEEEEechhhhhccCCccccceeC
Confidence             699999999864  6667999997

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-52  Score=347.89  Aligned_cols=182  Identities=36%  Similarity=0.784  Sum_probs=157.3

Q ss_pred             cCCCCCCCCCCCCCceEEEEEcCCCCccccchhhcceeeEEecchHHHHHhcccccCCCCCCCcceeeeecCCCccCCCC
Q 029174           13 AEVPPQSQPHKLERKWTFWFDNISKPKQGAAWGSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWED   92 (197)
Q Consensus        13 ~~~~~~~~~h~L~~~Wt~w~~~~~~~~~~~~y~~~l~~I~~f~TVE~Fw~~~~~l~~ps~l~~~~~~~~FK~gI~P~WED   92 (197)
                      .....+...|||+++|||||+.+.. .+..+|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+|||
T Consensus        28 ~~~~~~~~kHpL~~~Wt~wy~~~~~-~~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED  106 (213)
T d1ap8a_          28 SDSAHFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWED  106 (213)
T ss_dssp             CCCCCCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTT
T ss_pred             cCCCcCCcCCcCCCcEEEEEEcCCC-CcccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCC
Confidence            3334444579999999999998753 345789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEcCCC-CchHHHHHHHHHHHhcCCCCC-CCceeeEEEEEeCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 029174           93 PECANGGKWSVTSNRK-ANLDTMWLETMMALIGEQFDE-ADEICGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEI  170 (197)
Q Consensus        93 p~N~nGG~~~i~~~~k-~~~d~~We~lll~~Ige~~~~-~~~I~Gi~~s~R~~~~~isIW~~~~~~~~~~~~I~~~lk~~  170 (197)
                      |+|+|||+|++++.++ ..++++|++||+++|||+|+. .+.||||++|+|++.++|+||+++.+ .+.+..|++.|+++
T Consensus       107 ~~N~nGG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~-~~~~~~I~~~lk~~  185 (213)
T d1ap8a_         107 EANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSED-KEPLLRIGGKFKQV  185 (213)
T ss_dssp             TTTTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSSC-HHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHH
Confidence            9999999999999743 468999999999999999964 45799999999999999999999864 45567999999999


Q ss_pred             hCCCC--ceeeEeCCccccCCCccceeEC
Q 029174          171 LDVTD--RITYSFHDDSRRDRSVKSRYSV  197 (197)
Q Consensus       171 L~l~~--~i~y~~H~~~~~~~~~~~~~~~  197 (197)
                      |++++  .++|++|+++.. +..+.++||
T Consensus       186 L~l~~~~~i~y~~H~~~~~-~~~~~~~~~  213 (213)
T d1ap8a_         186 LKLTDDGHLEFFPHSSANG-RHPQPSITL  213 (213)
T ss_dssp             TTCCSSCCCEEECGGGGGC-CCSCCSEEC
T ss_pred             hCCCCCCeEEEEecccccc-cCCCCCccC
Confidence            99976  789999999754 333555554

>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: BLES03-like
domain: Basophilic leukemia expressed protein BLES03
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.16  Score=40.12  Aligned_cols=81  Identities=15%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CCCCcEEEEEcCCCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEEeC---CCcEEEEecCCCCCHHHHHHHHHHHHHHh
Q 029174           95 CANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEADEICGVVASVRQ---RQDKLALWTKTAANEAAQMGIGKKWKEIL  171 (197)
Q Consensus        95 N~nGG~~~i~~~~k~~~d~~We~lll~~Ige~~~~~~~I~Gi~~s~R~---~~~~isIW~~~~~~~~~~~~I~~~lk~~L  171 (197)
                      +.=-|+|+|.+.....+|.+|..+.-+.+-++|.    +  .-++.+.   +.-.|.|.++|-.+.+.+.++.+.|+ -+
T Consensus       107 ~v~sGKWmif~~p~d~VD~~W~~VA~At~~G~Lg----~--AKVst~~~~~~~rlIcVYT~Df~D~~DV~RV~~~LR-~~  179 (234)
T d1ztpa1         107 HVLSGKWLMHLAPGFKLDHAWAGIARAVVEGRLQ----V--AKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIR-AA  179 (234)
T ss_dssp             TCCCEEEEEEECSSHHHHHHHHHHHHHHHHTSCS----E--EEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHH-HT
T ss_pred             CceeeeeEEecCchHHHHHHHHHHHHHHHcCcee----e--EEeccCCCCCCceEEEEECCCCCCHHHHHHHHHHHH-Hc
Confidence            3457999999862346999999999999988873    2  3344442   34689999999999888999999986 58


Q ss_pred             CCCCceeeEeC
Q 029174          172 DVTDRITYSFH  182 (197)
Q Consensus       172 ~l~~~i~y~~H  182 (197)
                      ++...|.||.-
T Consensus       180 G~~~~i~YK~D  190 (234)
T d1ztpa1         180 GIKCLLTYKPD  190 (234)
T ss_dssp             TCCSCEEEEEH
T ss_pred             CCCceeeecch
Confidence            88766888763