Citrus Sinensis ID: 029177

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccccEEEEEcccccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHccccHHHHHHHcccccEEEEEEcccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHccccccccHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHcccccHHHHcccccEEEc
Coil and Loop (DISEMBL)
MMNTARFIKCvtvgdgavgkTCMLISytsntfptdyvptvfdnfsanvvvdgstvnlglwdtagqedynrlrplsyrgADVFLLAFSLISKASYENISkkwipelrhyaptvpivlvgtkqdlrEDKQYLinhpgatpittAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVvlqppkpkkrkrkarpcifl
Flexible Loop (DISEMBL)
mmntarfikcvtvgdgavgKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHpgatpittaQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIkvvlqppkpkkrkrkarpcifl
Low Complexity Region (SEG)
MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQppkpkkrkrkarpCIFL
Disordered region (IsUnstruct)
****ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL******************
Disordered Region (DISOPRED)
*****RF**CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI*HPGA*PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV*************ARPCIFL
Disordered Region (DISEMBL)
MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP***************
Disordered Region (DISPRO)
****ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKR*R****C***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q40220	196	Rac-like GTP-binding prot	N/A	no	0.994	1.0	0.928	2e-99
Q6Z7L8	197	Rac-like GTP-binding prot	yes	no	0.994	0.994	0.873	6e-99
Q41253	196	Rac-like GTP-binding prot	N/A	no	0.994	1.0	0.877	2e-94
Q6EP31	197	Rac-like GTP-binding prot	no	no	0.903	0.903	0.898	5e-94
Q38912	198	Rac-like GTP-binding prot	yes	no	0.918	0.914	0.867	3e-93
Q38919	195	Rac-like GTP-binding prot	no	no	0.979	0.989	0.880	4e-93
Q38937	196	Rac-like GTP-binding prot	no	no	0.994	1.0	0.857	4e-93
O04369	197	Rac-like GTP-binding prot	N/A	no	0.969	0.969	0.879	8e-93
Q41254	196	Rac-like GTP-binding prot	N/A	no	0.994	1.0	0.852	4e-92
Q39435	197	Rac-like GTP-binding prot	N/A	no	0.903	0.903	0.887	8e-92

>sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1

 Score =  361 bits (926), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/196 (92%), Positives = 192/196 (97%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPGATPITTAQGEELKK IGAAVY+ECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPKK+++K RPC+FL
Sbjct: 181 PKPKKKRKKTRPCVFL 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Lotus japonicus (taxid: 34305)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  359 bits (922), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 172/197 (87%), Positives = 183/197 (92%), Gaps = 1/197 (0%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLREDKQ+ ++HPG  PI+TAQGEELK++IGAA YIECSSKTQQNVK+VFD+AIKVVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 182 PKPKKRK-RKARPCIFL 197
           PKPKK+  RK R C  L
Sbjct: 181 PKPKKKNTRKQRSCWIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q41253|RAC13_GOSHI Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/196 (87%), Positives = 183/196 (93%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYA  VP+VLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+LI+HPGATPI+T+QGEELKK+IGA  YIECSSKTQQNVK VFDAAIKV L+P
Sbjct: 121 DLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDAAIKVALRP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPK++  K R C FL
Sbjct: 181 PKPKRKPCKRRTCAFL 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Gossypium hirsutum (taxid: 3635)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  343 bits (879), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 160/178 (89%), Positives = 171/178 (96%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+SKKWIPELRHYAP VPI+LVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DLR+DKQ+ ++HPGA PI+TAQGEEL+KLIGAA YIECSSKTQQN+K VFDAAIKVVL
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  340 bits (873), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 157/181 (86%), Positives = 171/181 (94%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYEN+SKKW+PELRHYAP VPI+LVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+   HPGA PI+TAQGEELKKLIGA  YIECS+KTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 182 P 182
           P
Sbjct: 181 P 181

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38919|RAC4_ARATH Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1

 Score =  340 bits (871), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 170/193 (88%), Positives = 181/193 (93%)

Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAG
Sbjct: 3   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAG 62

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QEDYNRLRPLSYRGADVF+LAFSLISKASYENI+KKWIPELRHYAP VPI+LVGTK DLR
Sbjct: 63  QEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLR 122

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184
           +DKQ+ I+HPGA PITT QGEELKKLIG+AVYIECSSKTQQNVK VFDAAIKVVLQPPK 
Sbjct: 123 DDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 182

Query: 185 KKRKRKARPCIFL 197
           KK+K+    C FL
Sbjct: 183 KKKKKNKNRCAFL 195

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of root hairs. May regulate a WAVE complex that activates the Arp2/3 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38937|RAC5_ARATH Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1

 Score =  340 bits (871), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 168/196 (85%), Positives = 183/196 (93%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+ I+HPGA PITT QGEELKKLIG+ +YIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PK KK+K+    C+FL
Sbjct: 181 PKQKKKKKNKNRCVFL 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  339 bits (869), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 168/191 (87%), Positives = 181/191 (94%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENI+KKWIPELRHYAP VPI+LVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DK +L +HPGA PITTAQGEEL+KLIGA  YIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKAR 192
           PK KK+KR+A+
Sbjct: 181 PKQKKKKREAQ 191

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|Q41254|RAC9_GOSHI Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1

 Score =  337 bits (863), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 180/196 (91%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           MNT+RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLIS+ASYEN+ KKWIPELRHYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+L ++PGA  ITT+QGEELKK+IGA  YIECSSKTQQNVK VFD AIK+ L+P
Sbjct: 121 DLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQQNVKAVFDVAIKIALRP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPK++  K R C FL
Sbjct: 181 PKPKRKPIKRRSCAFL 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Gossypium hirsutum (taxid: 3635)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  336 bits (861), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 158/178 (88%), Positives = 170/178 (95%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DLR+DKQ+ I+HPGA PITTAQGEEL+KLIGA  YIECSSKTQQNVK VFDAAIKVVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
356543878	196	PREDICTED: rac-like GTP-binding protein	0.994	1.0	0.928	1e-98
225446515	196	PREDICTED: Rac-like GTP-binding protein	0.994	1.0	0.948	2e-98
356549874	196	PREDICTED: rac-like GTP-binding protein	0.994	1.0	0.908	5e-98
2500198	196	RecName: Full=Rac-like GTP-binding prote	0.994	1.0	0.928	1e-97
356543006	197	PREDICTED: rac-like GTP-binding protein	0.994	0.994	0.908	2e-97
449433780	197	PREDICTED: rac-like GTP-binding protein	0.994	0.994	0.868	3e-97
115445747	197	Os02g0312600 [Oryza sativa Japonica Grou	0.994	0.994	0.873	3e-97
358343348	196	Rac-like GTP binding protein [Medicago t	0.994	1.0	0.913	7e-97
388503340	196	unknown [Lotus japonicus]	0.994	1.0	0.918	8e-97
449468388	196	PREDICTED: rac-like GTP-binding protein	0.994	1.0	0.928	1e-96

>gi|356543878|ref|XP_003540385.1| PREDICTED: rac-like GTP-binding protein RAC2-like [Glycine max]

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/196 (92%), Positives = 191/196 (97%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPGATPITTAQGEELKK IGAAVYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPKK+++K R C+FL
Sbjct: 181 PKPKKKRKKNRTCVFL 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446515|ref|XP_002278788.1| PREDICTED: Rac-like GTP-binding protein ARAC5 [Vitis vinifera] gi|302143377|emb|CBI21938.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/196 (94%), Positives = 194/196 (98%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLREDKQ+LI+HPGATPITTAQGE+LKK+IGAAVYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDKQFLIDHPGATPITTAQGEDLKKMIGAAVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPKKR+RK+RPC+FL
Sbjct: 181 PKPKKRRRKSRPCVFL 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549874|ref|XP_003543315.1| PREDICTED: rac-like GTP-binding protein RAC2-like [Glycine max]

 Score =  362 bits (928), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 178/196 (90%), Positives = 188/196 (95%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV+DGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVIDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPIVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HP ATPITTAQGEELKK IGAAVYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPAATPITTAQGEELKKEIGAAVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
            KPKK+++K R C+FL
Sbjct: 181 SKPKKKRKKNRTCVFL 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2500198|sp|Q40220.1|RAC2_LOTJA RecName: Full=Rac-like GTP-binding protein RAC2; Flags: Precursor gi|1370201|emb|CAA98190.1| RAC2 [Lotus japonicus]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/196 (92%), Positives = 192/196 (97%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPGATPITTAQGEELKK IGAAVY+ECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPKK+++K RPC+FL
Sbjct: 181 PKPKKKRKKTRPCVFL 196

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543006|ref|XP_003539954.1| PREDICTED: rac-like GTP-binding protein RAC2-like [Glycine max]

 Score =  360 bits (923), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/197 (90%), Positives = 185/197 (93%), Gaps = 1/197 (0%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+T RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTTRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPG T I TAQGEELKK IGAAVYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGTTAIATAQGEELKKAIGAAVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKAR-PCIFL 197
           PK KK+ +K   PC+FL
Sbjct: 181 PKSKKKGKKKNTPCVFL 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433780|ref|XP_004134675.1| PREDICTED: rac-like GTP-binding protein 7-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/197 (86%), Positives = 183/197 (92%), Gaps = 1/197 (0%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIFKKWLPELKHYAPNVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED++YLI+HPGATPIT AQGEEL+K+IGA  YIECSSKTQ+NVK VFDAAIKV L+P
Sbjct: 121 DLREDREYLIDHPGATPITAAQGEELRKMIGAITYIECSSKTQKNVKNVFDAAIKVALRP 180

Query: 182 PKPKKRKRKAR-PCIFL 197
           P+PKK+ RK R  C  L
Sbjct: 181 PRPKKKARKQRTACALL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115445747|ref|NP_001046653.1| Os02g0312600 [Oryza sativa Japonica Group] gi|75325478|sp|Q6Z7L8.1|RAC7_ORYSJ RecName: Full=Rac-like GTP-binding protein 7; AltName: Full=GTPase protein ROP5; AltName: Full=OsRac7; Flags: Precursor gi|14030771|gb|AAK53060.1|AF376055_1 putative Rop family GTPase ROP5 [Oryza sativa] gi|46390341|dbj|BAD15789.1| putative small GTP binding protein [Oryza sativa Japonica Group] gi|46391023|dbj|BAD15966.1| putative small GTP binding protein [Oryza sativa Japonica Group] gi|113536184|dbj|BAF08567.1| Os02g0312600 [Oryza sativa Japonica Group] gi|218190576|gb|EEC73003.1| hypothetical protein OsI_06922 [Oryza sativa Indica Group] gi|222622693|gb|EEE56825.1| hypothetical protein OsJ_06426 [Oryza sativa Japonica Group]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/197 (87%), Positives = 183/197 (92%), Gaps = 1/197 (0%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYAP VPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLREDKQ+ ++HPG  PI+TAQGEELK++IGAA YIECSSKTQQNVK+VFD+AIKVVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 182 PKPKKRK-RKARPCIFL 197
           PKPKK+  RK R C  L
Sbjct: 181 PKPKKKNTRKQRSCWIL 197

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343348|ref|XP_003635766.1| Rac-like GTP binding protein [Medicago truncatula] gi|157863016|gb|ABV90640.1| ROP8 [Medicago truncatula] gi|355501701|gb|AES82904.1| Rac-like GTP binding protein [Medicago truncatula]

 Score =  358 bits (919), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 179/196 (91%), Positives = 189/196 (96%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPGAT ITTAQGEELK+ IGAAVY+ECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGATAITTAQGEELKRAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PK KK+++K R CIFL
Sbjct: 181 PKQKKKRKKNRSCIFL 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503340|gb|AFK39736.1| unknown [Lotus japonicus]

 Score =  358 bits (918), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 180/196 (91%), Positives = 191/196 (97%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN VVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANAVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLRED+QYLI+HPGATPITTAQGEELKK IGAAVY+ECSSKTQQNV+ VFDAAIKVVLQP
Sbjct: 121 DLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVEAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPKK+++K RPC+FL
Sbjct: 181 PKPKKKRKKTRPCVFL 196

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468388|ref|XP_004151903.1| PREDICTED: rac-like GTP-binding protein 7-like [Cucumis sativus] gi|449530456|ref|XP_004172211.1| PREDICTED: rac-like GTP-binding protein 7-like [Cucumis sativus]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/196 (92%), Positives = 190/196 (96%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+L +HPGA PITTAQGEELKK IGAAVYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFLTSHPGAVPITTAQGEELKKSIGAAVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 182 PKPKKRKRKARPCIFL 197
           PKPK+++RKAR C+FL
Sbjct: 181 PKPKRKRRKARKCVFL 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.994	1.0	0.826	2.4e-85
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.979	0.989	0.849	4.9e-85
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.908	0.904	0.865	1.2e-83
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.908	0.908	0.882	1.2e-83
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.908	0.908	0.882	2.4e-83
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.908	0.908	0.871	3.9e-83
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.908	0.908	0.871	8.2e-83
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.908	0.890	0.871	2.8e-82
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.903	0.831	0.853	1.4e-80
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.903	0.827	0.808	3e-78

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 162/196 (82%), Positives = 175/196 (89%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQX 181
             DLR+DKQ+ I+HPGA PITT QGEELKKLIG+ +YIECSSKTQQNVK VFDAAIKVVLQ 
Sbjct:   121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query:   182 XXXXXXXXXXXXCIFL 197
                         C+FL
Sbjct:   181 PKQKKKKKNKNRCVFL 196

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 164/193 (84%), Positives = 173/193 (89%)

Query:     5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
             +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAG
Sbjct:     3 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAG 62

Query:    65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
             QEDYNRLRPLSYRGADVF+LAFSLISKASYENI+KKWIPELRHYAP VPI+LVGTK DLR
Sbjct:    63 QEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLR 122

Query:   125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQXXXX 184
             +DKQ+ I+HPGA PITT QGEELKKLIG+AVYIECSSKTQQNVK VFDAAIKVVLQ    
Sbjct:   123 DDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 182

Query:   185 XXXXXXXXXCIFL 197
                      C FL
Sbjct:   183 KKKKKNKNRCAFL 195

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 155/179 (86%), Positives = 169/179 (94%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYEN+SKKW+PELRHYAP VPI+LVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+   HPGA PI+TAQGEELKKLIGA  YIECS+KTQQNVK VFDAAIKVVLQ
Sbjct:   121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQ 179

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 158/179 (88%), Positives = 171/179 (95%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+ I+HPGA PITTAQGEELKKLIGA  YIECSSKTQ+NVK VFDAAI+VVLQ
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQ 179

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 158/179 (88%), Positives = 169/179 (94%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+SKKWIPEL+HYAP VPI+LVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+ ++HPGA PITTAQGEEL+K IGA  YIECSSKTQ NVK VFDAAIKVVLQ
Sbjct:   121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQ 179

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 156/179 (87%), Positives = 170/179 (94%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+ I+HPGA PITTAQGEEL+K IGA  YIECSSKTQ+NVK VFDAAI+VVLQ
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQ 179

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 156/179 (87%), Positives = 170/179 (94%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+ I+HPGA PITT QGEELKKLIGA  YIECSSK+Q+NVK VFDAAI+VVLQ
Sbjct:   121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 179

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 156/179 (87%), Positives = 168/179 (93%)

Query:     2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
             M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
             TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP +PIVLVGTK 
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query:   122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             DLR+DKQ+L +HPGA  ITTAQGEEL+K+IGA  Y+ECSSKTQQNVK VFD AI+V L+
Sbjct:   121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 152/178 (85%), Positives = 165/178 (92%)

Query:     3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
             + +RFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVVD +TVNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENI KKWIPEL+HYAP VPIVLVGTK D
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             LREDK YL++HPG  P+TTAQGEEL+K IGAA YIECSSKTQQNVK VFDAAIKVV+Q
Sbjct:   124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQ 181

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 144/178 (80%), Positives = 165/178 (92%)

Query:     3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
             + ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVV+G+TVNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
             AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYEN+ KKWIPEL+H+AP VP+VLVGTK D
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query:   123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             LREDK YL +HPG +P+TTAQGEEL+KLIGA  YIECSSKTQQNVK VFD+AIK V++
Sbjct:   124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIK 181

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.6229	0.9187	0.9329	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.8730	0.9949	0.9949	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6406	0.9492	0.9739	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.8388	0.9137	0.8372	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6406	0.9492	0.9739	yes	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8156	0.9086	0.8605	no	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.8820	0.9035	0.9035	no	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5760	0.9238	0.9528	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.8707	0.9035	0.9035	no	no
Q16YG0	CDC42_AEDAE	No assigned EC number	0.5416	0.9441	0.9738	N/A	no
P62998	RAC1_BOVIN	No assigned EC number	0.6406	0.9492	0.9739	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6406	0.9492	0.9739	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8100	0.9086	0.8325	no	no
O82480	RAC7_ARATH	No assigned EC number	0.7641	0.9593	0.9043	no	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.7656	0.9746	0.8971	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8775	0.9949	1.0	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.7891	0.9390	0.8644	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.7960	0.9949	0.9751	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.8820	0.9035	0.9035	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8520	0.9949	1.0	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5803	0.9644	0.9693	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7864	0.9695	0.9138	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.8795	0.9695	0.9695	N/A	no
P48554	RAC2_DROME	No assigned EC number	0.6216	0.9187	0.9427	yes	no
Q40220	RAC2_LOTJA	No assigned EC number	0.9285	0.9949	1.0	N/A	no
Q01112	CDC42_SCHPO	No assigned EC number	0.5520	0.9492	0.9739	yes	no
Q03206	RAC1_CAEEL	No assigned EC number	0.5815	0.9238	0.9528	yes	no
O76321	RECG_ENTHI	No assigned EC number	0.5852	0.8832	0.8743	N/A	no
Q35638	RHO1_PEA	No assigned EC number	0.8651	0.9035	0.9035	N/A	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8324	0.9390	0.8644	no	no
P0CY33	CDC42_CANAL	No assigned EC number	0.5760	0.9238	0.9528	N/A	no
P63001	RAC1_MOUSE	No assigned EC number	0.6406	0.9492	0.9739	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.8707	0.9035	0.9035	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.8571	0.9949	1.0	no	no
Q38912	RAC3_ARATH	No assigned EC number	0.8674	0.9187	0.9141	yes	no
Q38919	RAC4_ARATH	No assigned EC number	0.8808	0.9796	0.9897	no	no
Q39435	RAC1_BETVU	No assigned EC number	0.8876	0.9035	0.9035	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.8988	0.9035	0.9035	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-130
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-106
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-105
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-91
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-86
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-79
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	6e-79
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	5e-76
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-72
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-72
pfam00071	162	pfam00071, Ras, Ras family	4e-70
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-60
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-54
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-52
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-50
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-43
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	6e-43
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-42
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-42
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	7e-40
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-35
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-34
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-33
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-33
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-32
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-32
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-29
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-29
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-28
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-28
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-28
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-27
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-27
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-27
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-27
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-26
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-26
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-26
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-25
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	8e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-24
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-23
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-22
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-22
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-22
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-22
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-22
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-21
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-21
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-20
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	5e-20
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-20
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-19
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-19
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-19
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-19
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-17
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-16
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-16
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-14
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-13
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-13
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-13
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	9e-13
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-11
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	7e-11
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-07
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	9e-07
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-04
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.002

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  363 bits (934), Expect = e-130
 Identities = 158/173 (91%), Positives = 164/173 (94%)

Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
           FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           DYNRLRPLSYRGADVFLLAFSLISKASYEN+ KKWIPELRHYAP VPIVLVGTK DLR+D
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           KQ+  +HPGA PITTAQGEEL+K IGAA YIECSSKTQQNVK VFDAAIKVVL
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  302 bits (777), Expect = e-106
 Identities = 104/174 (59%), Positives = 129/174 (74%), Gaps = 2/174 (1%)

Query: 10  CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 69
            V VGDGAVGKTC+LI YT+N FP DYVPTVF+N+SA+V VDG  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 70  RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY 129
           RLRPLSY   DVFL+ FS+ S AS+EN+ +KW PE++H+ P VPI+LVGTK DLR DK  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 130 L--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           L  ++     P+T  QG+ L K IGA  Y+ECS+ TQ+ V+ VF+ AI+  L  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  300 bits (770), Expect = e-105
 Identities = 110/171 (64%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IK V VGDGAVGKTC+LISYT+N FPT+YVPTVFDN+SANV VDG  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFLL FS+ S +S+EN+  KW PE++HY P VPI+LVGTK DLR+D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 128 QYL-INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177
             L        PIT  +GE+L K IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  263 bits (675), Expect = 3e-91
 Identities = 112/173 (64%), Positives = 135/173 (78%), Gaps = 2/173 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  252 bits (646), Expect = 2e-86
 Identities = 96/194 (49%), Positives = 124/194 (63%), Gaps = 4/194 (2%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
           +K V VGDG  GKTC+L+ Y   +FP +YVPTVF+N+   + V +G  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           DY+RLRPLSY   DV L+ +S+ +  S +N+  KW PE+ H+ P  PIVLVG K DLR+D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 127 KQ--YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184
           K     +   G  P+T  QGE + K IGA  YIECS+K  +NV  VFDAAI V L     
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 185 KKRKR-KARPCIFL 197
             RK+ K + C+ L
Sbjct: 184 AARKKKKKKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  233 bits (597), Expect = 2e-79
 Identities = 94/170 (55%), Positives = 127/170 (74%), Gaps = 2/170 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +KCV VGDGAVGKT +++SYT+N +PT+YVPT FDNFS  V+VDG  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +++LRPL Y   DVFLL FS+++ +S++NIS+KWIPE+R + P  PI+LVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 128 QYLIN--HPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI 175
             LI     G  P++ ++ + L + IGA  YIECS+ TQ+N+K VFD AI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  233 bits (595), Expect = 6e-79
 Identities = 106/192 (55%), Positives = 131/192 (68%), Gaps = 6/192 (3%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLR LSY   +VF++ FS+ S +SYEN+  KW PE+ H+ P VPI+LVGTK+DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
             L  +   G  PIT  QG  L K I A  Y+ECS+  Q  VK VF  A++ VL  P P 
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN-PTPI 182

Query: 186 KRKRKARPCIFL 197
           K  +    C+ L
Sbjct: 183 KDTKS---CVLL 191

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  225 bits (575), Expect = 5e-76
 Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 2/174 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT   GE+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  216 bits (551), Expect = 2e-72
 Identities = 97/174 (55%), Positives = 133/174 (76%), Gaps = 2/174 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS+++ AS++N+ ++W+PEL+ YAP VP +L+GT+ DLR+D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           + L  +N     PIT  QG++L K IGA  Y+ECS+ TQ+ +KTVFD AI  +L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  215 bits (549), Expect = 4e-72
 Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 2/173 (1%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            +  +      P+   +G  + + IGA  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  210 bits (536), Expect = 4e-70
 Identities = 76/174 (43%), Positives = 110/174 (63%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V VGDG VGK+ +LI +T N FP +Y+PT+  D ++  + VDG TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           +  LRPL YRGA  FLL + + S+ S+EN+ KKW+ E+  +A   VPIVLVG K DL + 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           ++T +GE L K +G   ++E S+KT +NV+  F+   + +L+
Sbjct: 120 RV----------VSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  187 bits (476), Expect = 1e-60
 Identities = 85/187 (45%), Positives = 114/187 (60%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKT +L  +T   FP +Y PTVF+N+  +  VDG  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
            RLRPLSY  A V L+ F++ +  S EN+  KWI E+R Y P VP++LVG K+DLR++  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRK 188
              N+     +   Q + + + IGA  Y+ECS+ T + V  VF+AA +  L   K  K +
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSGKEE 182

Query: 189 RKARPCI 195
             A  CI
Sbjct: 183 PGANCCI 189

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  169 bits (429), Expect = 8e-54
 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGD   GKT +L  +  ++FP +YVPTVF+N++A+  VD   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ +RPLSY  +D  L+ F +    + +++ KKW  E+R + P  P++LVG K DLR D 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAA 174
             L  +++    P++  QG  L K IGAA Y+ECS+KT +N V+ VF+ A
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  166 bits (421), Expect = 1e-52
 Identities = 79/181 (43%), Positives = 106/181 (58%), Gaps = 4/181 (2%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           +RLR LSY    V +L FS+ +  S EN+  KW+ E+RH+ P V +VLV  K DLRE + 
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL--QPPKPKK 186
                     I+  +G  + K I A  Y+ECS+K  + V   F  A +V L  +PP P  
Sbjct: 122 ERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPHS 179

Query: 187 R 187
           R
Sbjct: 180 R 180

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  159 bits (404), Expect = 4e-50
 Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 14/171 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +GD  VGKT +L+ +  N F  +Y  T+  +F S  + VDG  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + + ++ S+EN+  KW+ EL+ YAP  +PI+LVG K DL +
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           ++Q          ++T + ++  K  G  ++ E S+KT +NV   F++  +
Sbjct: 120 ERQ----------VSTEEAQQFAKENG-LLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  144 bits (364), Expect = 2e-43
 Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 8/198 (4%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K V +GDG VGKT +L     + FP  Y PT+ +   A  +      + L LWDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
           +Y  LRP  YRGA+  L+ +    + S + ++++W+ ELR  AP  VPI+LVG K DL +
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 126 DKQ----YLINHPGATPITTAQGEELKKLIGAAVYIECSSK--TQQNVKTVFDAAIKVVL 179
           ++      L        +     + +   +     +E S+K  T  NV  +F   ++ +L
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185

Query: 180 QPPKPKKRKRKARPCIFL 197
           +  +    K + R    L
Sbjct: 186 EEIEKLVLKNELRQLDRL 203

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  140 bits (356), Expect = 6e-43
 Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 14/170 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + I + S  F  +Y PT+ D++   +VVDG T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  D F+L +S+ S+ S+E I   ++ I  ++     VPIVLVG K DL  +
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD-KEDVPIVLVGNKCDLENE 119

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           +Q          ++T +GE L +  G   ++E S+KT  N+  +F+  ++
Sbjct: 120 RQ----------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  139 bits (352), Expect = 3e-42
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+ +L  +T   F   Y  T+  +F    + VDG  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   LL + + ++ S+EN+ + W+ ELR YA P V I+LVG K DL E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +Q          ++  + E   +  G   + E S+KT  NV+  F+   + +L+
Sbjct: 120 QRQ----------VSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  139 bits (350), Expect = 6e-42
 Identities = 69/170 (40%), Positives = 102/170 (60%), Gaps = 5/170 (2%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           + +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 129 YLI---NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAA 174
            L+   NH   TP++  QG  + K IGAA YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHR-QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  135 bits (341), Expect = 7e-40
 Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 3/187 (1%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           + +RPL Y  +D  LL F +     +++  KKW  E+  Y P+  I+L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVLQPPKPK 185
            L  +++    PI+  QG  + K +GA  Y+ECS+ T ++++ ++F  A  + +    P 
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 186 KRKRKAR 192
            +K   R
Sbjct: 195 AKKSPVR 201

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  133 bits (336), Expect = 3e-39
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 15/193 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT +L  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED-- 126
           + +RPL+Y  +D  L+ F +    + +++ KKW  E + + P   +VLVG K D+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 127 ------KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAAIKVVL 179
                 KQ LI      P+T  QG  L + +GA  Y+ECSS+  +N V+ VF       +
Sbjct: 123 TLRELSKQRLI------PVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Query: 180 QPPKPKKRKRKAR 192
           +   P  ++  +R
Sbjct: 177 RREHPSLKRSTSR 189

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  123 bits (312), Expect = 3e-36
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + I +    F  DY PT+ D++   + +DG    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FLL +S+  + S+E I K  + I  ++     VPIVLVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++T +G+EL +  G   ++E S+K + NV   F
Sbjct: 121 RV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  122 bits (309), Expect = 1e-35
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + I +    F  +Y PT+ D++   + +DG    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FLL +S+  + S+E I+K  + I  ++     VPIVLVG K DL  +
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRD-DVPIVLVGNKCDLENE 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++T +G+EL +  G   ++E S+K + NV   F
Sbjct: 123 RV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  119 bits (301), Expect = 1e-34
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 14/168 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+G VGKT +++ Y  N F   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y+ L P+ YR AD  +L + +    S++ + KKWI EL+      + +V+VG K DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
            +           ++ ++ EE  K +GA  + E S+KT + ++ +F +
Sbjct: 120 QRV----------VSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLS 156

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  117 bits (295), Expect = 1e-33
 Identities = 59/169 (34%), Positives = 81/169 (47%), Gaps = 16/169 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
           IK V VGD  VGK+ +L     N    T+Y P    N+   V+  DG T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPT-VPIVLVGTKQDL 123
           EDY+ +R L YR  +  L  F ++      E I +K   E+ H+A + VPI+LVG K DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
           R+ K           + T       KL      I  S++T +N+ + F 
Sbjct: 122 RDAK-----------LKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  115 bits (291), Expect = 4e-33
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ S+ S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDL-AA 120

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++T QG++L K  G   YIE S+KT+Q V+  F
Sbjct: 121 RT----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  115 bits (290), Expect = 1e-32
 Identities = 79/194 (40%), Positives = 102/194 (52%), Gaps = 28/194 (14%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--DNF--------SANVVVD 51
           IKCV VGD AVGKT ++ +   N   T Y      VPTV+  D +         +  VVD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 52  GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT 111
           G +V+L LWDT G  D+++ R  +Y  +DV LL FS+ S  S  N+   W PE+RH+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 112 VPIVLVGTKQDLRE---DKQYLINHPGATPITTA------QGEELKKLIGAAVYIECSSK 162
           VP++LVG K DLR    D+      P A PI  A       G  + K +G   Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY-ETSVV 179

Query: 163 TQQNVKTVFDAAIK 176
           TQ  VK VFD AI+
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  113 bits (285), Expect = 3e-32
 Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 16/167 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + VD  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 68  YNRLRPLSY-RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
           +  L P SY R + V ++ + + ++ S++N   KWI ++R      V IVLVG K DL +
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
            +Q          ++T +GE+  K    A++IE S+K   NVK +F 
Sbjct: 120 KRQ----------VSTEEGEKKAKENN-AMFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (285), Expect = 6e-32
 Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 16/194 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG G VGK+ + I +  N F  +Y PT+ D++    V+D  T  L + DTAGQE+Y
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY 66

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDK 127
           + +R    R    FL  +S+ S++S+E I+      LR      VP++LVG K DL  ++
Sbjct: 67  SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ----PPK 183
           Q          ++T +G+EL K  G   ++E S+K + NV   F   ++ + +       
Sbjct: 127 Q----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVREIRKYLKEDMP 175

Query: 184 PKKRKRKARPCIFL 197
            +K+K+K   C+ L
Sbjct: 176 SQKQKKKGGLCLIL 189

Length = 189

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  109 bits (275), Expect = 1e-30
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQ 65
           K V +GD +VGK+ +++ +  N F  +   T+   F   +  V +D +TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E Y  L P+ YRGA   ++ + + S+ S+E  +K W+ EL+ H  P + I L G K DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
             +Q          ++T + +E     G  +++E S+KT +NV  +F  
Sbjct: 120 SKRQ----------VSTEEAQEYADENG-LLFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  105 bits (265), Expect = 3e-29
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+ +L+ +T +TF  D   T+  +F    V VDG  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLR 124
            +  L    YRGA   +L + +  + +++N+   W+ EL  Y+  P    +LVG K D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
                         +T  +G++  +     ++IE S+KT+  V+  F+
Sbjct: 120 N-----------REVTREEGQKFARKHN-MLFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  105 bits (265), Expect = 3e-29
 Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAG 64
           IK + VG+G VGK+ M+  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QE+++ +    YRGA   +L FS   + S+E I   W  ++      +P+VLV TK DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
           +             IT  + E L K +   ++   S K   NV  +F+
Sbjct: 120 DQ----------AVITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  105 bits (263), Expect = 6e-29
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLRED 126
           +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL + 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           K           +   + +E    +G   ++E S+K   NV+  F
Sbjct: 123 KV----------VDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  103 bits (259), Expect = 3e-28
 Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
              K V VG G VGK+ + I +  + F TDY PT+ D+++    +DG    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E+++ +R    R  + FLL FS+  + S+E + K     LR       P++LVG K DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
             +Q          ++  +G+EL + +    YIE S+K + NV   F   ++V+
Sbjct: 121 HQRQ----------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  103 bits (259), Expect = 4e-28
 Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 25/202 (12%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +GDG VGKT + I    N F   Y PT+ D++   VVVDG    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR---HYAPTVPIVLVGTKQDLRE 125
             LR    R  + F+L +S+ S++++E + +      R     A  VPI++VG K D   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK--------- 176
           +++          ++T +G  L + +G   +IE S+KT  NV+  F   ++         
Sbjct: 121 ERE----------VSTEEGAALARRLGCE-FIEASAKTNVNVERAFYTLVRALRQQRQGG 169

Query: 177 -VVLQPPKPKKRKRKARPCIFL 197
                 P  KK K+K R C+ +
Sbjct: 170 QGPKGGPTKKKEKKK-RKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  102 bits (257), Expect = 5e-28
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 14/166 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+C+L+ ++ ++F   ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + +  + S+ENI K W+  +  H +  V  +LVG K D+ E
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCDMEE 122

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            +           ++  +GE L +  G   ++E S+K   NV+  F
Sbjct: 123 KRV----------VSKEEGEALAREYGIK-FLETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  101 bits (254), Expect = 1e-27
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  D   T+   F+   + +DG T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           Y  +    YRGA   LL + +  K+++EN+  +W+ ELR +A + + I+LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           + T + +   +  G + +IE S+    NV+  F
Sbjct: 124 RA----------VPTEEAKAFAEKNGLS-FIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  101 bits (255), Expect = 2e-27
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 18/186 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 69  NRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           + L P  Y  G   ++L +S+ S+ S+E +   +   L       VPIVLVG K DL  +
Sbjct: 63  SIL-PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI----KVVLQPP 182
           +Q          ++  +G++L +  GAA ++E S+K  +NV+  F+  I    KV    P
Sbjct: 122 RQ----------VSAEEGKKLAESWGAA-FLESSAKENENVEEAFELLIEEIEKVENPLP 170

Query: 183 KPKKRK 188
             +K K
Sbjct: 171 PGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  100 bits (252), Expect = 3e-27
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDK 127
             +R   +R  + FLL FS+    S+  +++     LR      VP++LVG K DL + +
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAV-YIECSSKTQQNVKTVF 171
           Q             +  E         V Y+E S+KT+ NV  VF
Sbjct: 122 Q------------VSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 99.8 bits (249), Expect = 7e-27
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +G    GK+C+L  +  N F  D   T+   F + VV V G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   LL + + S+ S+  ++  W+ + R  A P + I+LVG K+DL +D
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           ++  +    A+    AQ   L       +++E S+ T +NV+  F    + +
Sbjct: 121 RE--VTFLEAS--RFAQENGL-------LFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 99.8 bits (249), Expect = 8e-27
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 67
           K + +GD  VGKTC++  + S TF      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
           +  +    YR A+  ++A+ +  ++S+E++   WI E+  Y A  V ++L+G K DL E 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           ++          +   +   L +  G    +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 99.6 bits (248), Expect = 2e-26
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
           K + VGD  VGKTC+L+ +    F    ++ TV   F+  VV VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
            +  +    YR A   LL + + +K+S++NI + W+ E+  YA + V I+L+G K D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           ++           +    GE L K  G   ++E S+KT  NV+  F A  K
Sbjct: 121 ERV----------VKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 98.6 bits (246), Expect = 2e-26
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   LL + +  + ++ +++  W+ + R ++   + I+L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++          ++  +GE   +  G  +++E S+KT  NV+  F    K +  
Sbjct: 125 RE----------VSYEEGEAFAREHG-LIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 99.1 bits (247), Expect = 3e-26
 Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 25/186 (13%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-----------VN 56
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV  S            V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 57  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRH--YAPTVPI 114
           L LWDTAGQE +  L    +R A  FLL F L S+ S+ N+ + W+ +L+   Y     I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
           VL+G K DL + ++          ++  Q  EL    G   Y E S+ T QNV+   +  
Sbjct: 124 VLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETL 172

Query: 175 IKVVLQ 180
           + ++++
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 98.5 bits (246), Expect = 3e-26
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 17/178 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V VD   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV-----PIVLVGTKQD 122
           +  L    YRGAD  +L + + +  S+E++   W  E    A        P V++G K D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           L E +Q          ++T + ++  K  G   Y E S+K   NV   F+   ++ L+
Sbjct: 121 LEEKRQ----------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 98.0 bits (244), Expect = 5e-26
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 63
           +  +K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVG 118
           GQE +  LR   YRG+D  LL FS+    S++N+S  W  E  +YA      + P V++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 121

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K D+  ++Q          ++T + +   +  G   Y E S+K   NV   F+ A++ V
Sbjct: 122 NKIDI-PERQ----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 95.0 bits (236), Expect = 5e-25
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 71
           +GD  VGKTC+L  +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 72  RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLREDKQYL 130
               YR A    L + + S+ SY++I  KW+ ++  YAP  V  +L+G K D  + +Q  
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 131 INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                   +   QG +L K  G   + E S+ T +N+K  F    ++VLQ
Sbjct: 123 --------VGDEQGNKLAKEYGMDFF-ETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 94.9 bits (236), Expect = 8e-25
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 21/177 (11%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + +  N F   Y PT+ D++   V +DG   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY------APTVPIVLVGTKQD 122
             +R L  +    FLL +S+ S+AS   +      ELR        +  VP+VLVG K D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           L +D+Q          ++   G  L +  G   + E S++ + NV  VF   ++ ++
Sbjct: 118 LEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 93.7 bits (233), Expect = 2e-24
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + + S TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R L  +    F++ +SL+++ ++++I   +  I  ++ Y   VPI+LVG K DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           ++          +++A+G  L +  G   ++E S+K++  V  +F   ++
Sbjct: 122 RE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 14/181 (7%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 60
           M+ A   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGT 119
           DTAGQE +  +    YRGA   LL + +  + ++ +++  W+ + R +A   + I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K DL   +           ++T +GE+  K  G  +++E S+KT QNV+  F      + 
Sbjct: 120 KCDLAHRRA----------VSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAAKIY 168

Query: 180 Q 180
           +
Sbjct: 169 K 169

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 91.4 bits (227), Expect = 4e-23
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 11  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDY 68
           + +GD  VGK+ +L  +T   F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPI-VLVGTKQDLRED 126
             +    YR +   LL F + ++ S+E++   W+ E R H  P  P+ +LVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +Q          +T  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLGMK-YIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 88.9 bits (221), Expect = 1e-22
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 20/179 (11%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED- 67
           K   +G   VGK+ + + + +  F  +Y P +   +S  V +DG  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 68  ---YNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQD 122
               +  R L  R AD F+L +S+  ++S++ +S   + I E++     +P++LVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS-SKTQQNVKTVFDAAIKVVLQ 180
           L   +Q          ++T +G++L   +G   + E S ++    V+ VF    + V +
Sbjct: 119 LLHSRQ----------VSTEEGQKLALELGCLFF-EVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+ +L+S+ S++   D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV--LVGTKQDLRE 125
           +  L    YR A   +L + +  + ++ N+S  W  E+  Y+     V  LVG K D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA-AIKVVLQP 181
           ++           ++  +G  L K  G   ++ECS+KT++NV+  F+  A+K++  P
Sbjct: 135 ERD----------VSREEGMALAKEHGCL-FLECSAKTRENVEQCFEELALKIMEVP 180

Length = 211

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 88.7 bits (220), Expect = 1e-22
 Identities = 47/174 (27%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 11  VTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           V VG G VGK+ +L +               T  D       +D   V L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 68  YNRLRP-----LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           +  L       L  RGAD+ LL      + S E+     +  LR     +PI+LVG K D
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGNKID 117

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           L E++           +      E    I      E S+KT + V  +F+  I+
Sbjct: 118 LLEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 89.5 bits (222), Expect = 2e-22
 Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQ 65
           +K V +G  +VGKT ++  Y  + F    Y  T+   F A  +VV    V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           E Y  +  + YRGA   ++ + L   +S+E   K W+ EL++      I L GTK DL E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             + L            Q  +    I A  + E SSKT QNV  +F
Sbjct: 120 QDRSL----RQVDFHDVQ--DFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 87.6 bits (217), Expect = 4e-22
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 13/166 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 67
           K + VGD +VGKTC++  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAPT-VPIVLVGTKQDLRE 125
           +  +    YRGA   ++ F L   AS E+ +++W+ + L+   P+ V + LVGTK+DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             QY +    A  +      E+K     A Y   S+ T +NV+  F
Sbjct: 121 PAQYALMEQDAIKLA----REMK-----AEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 87.6 bits (217), Expect = 5e-22
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R  K V +G G VGK+ + + + S++FP  + PT+ D +     +D     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDL 123
            ++  +R    R  + F++ +S+  + S++  S  K+ I  +R     +P+VLVG K DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDL 119

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            + +Q          +TT +G  L +      + E S+  +  +   F   ++
Sbjct: 120 EQQRQ----------VTTEEGRNLAREFNCP-FFETSAALRFYIDDAFHGLVR 161

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   L+ + +  +++Y ++S  W+ + R+   P   I L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           +T  + ++     G  +++ECS+KT +NV+  F    K + Q
Sbjct: 123 RD----------VTYEEAKQFADENG-LLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 1e-21
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + +    F   Y PT+ D++   + VD     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R L  +    F L +S+ ++ S+ ++   ++ I  ++     VP++LVG K DL ++
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++  +G+ L +  G   ++E S+K++ NV  +F
Sbjct: 122 RV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 67
           K + +G+ +VGKT  L  Y  ++F + +V TV  +F    V      + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ ++
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           +           ++  +G +L   +G   + E S+K   NVK VF+  + ++
Sbjct: 122 RV----------VSAERGRQLADQLGFE-FFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 83.7 bits (207), Expect = 1e-20
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R L  +    F+L +S+ +++++ ++   ++ I  ++     VP++LVG K DL ++
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           +           +   QG+ L +  G A ++E S+K + NV  +F   ++
Sbjct: 122 RV----------VGKEQGQNLARQWGCA-FLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 82.4 bits (204), Expect = 5e-20
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++ V +GD  VGK+ +++S  S  FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
                    R A+V  L +S+   ++ E I  KW+P +R     VPI+LVG K DLR+  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 121

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
                     PI      E +++      +ECS+KT  NV  VF  A K VL P
Sbjct: 122 SQAGLEEEMLPIM----NEFREIE---TCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 82.1 bits (203), Expect = 6e-20
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 64
           R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 65  QEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQ 121
           QE + + +    YR     +  + + + AS+ ++   WI E   ++    VP +LVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKC 119

Query: 122 DLREDKQ 128
           DLRE  Q
Sbjct: 120 DLREQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K V +G+  VGKTC++  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  +LVG K DL E 
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           ++          ++  + EE         Y+E S+K   NV+ +F
Sbjct: 128 RE----------VSQQRAEEFSD-AQDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + V+G TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           Y  +    YRGA   LL + +  + +++N+ ++W+ ELR +A + + I++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDL--- 129

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                NH  +      Q    K+ +    ++E S+    NV+  F
Sbjct: 130 -----NHLRSVAEEDGQALAEKEGLS---FLETSALEATNVEKAF 166

Length = 216

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 80.3 bits (198), Expect = 2e-19
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-----NVVVDGSTVNLGLWDT 62
           +K + +GD AVGK+ ++  +  +     Y P     ++      N   +G T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMD----GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           AGQE +  +    Y  A   +L F +  K +Y+N+S KW  ELR Y P +P ++V  K D
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNLS-KWYEELREYRPEIPCIVVANKID 115

Query: 123 L 123
           L
Sbjct: 116 L 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 81.1 bits (200), Expect = 3e-19
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 30/204 (14%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  +    YRG    ++ + + +  S+ N+ K+W+ E+      V  VLVG K D  + +
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND--DPE 124

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL-----QPP 182
           + ++    A       G  L          E S+K   NV+ +F+   ++VL        
Sbjct: 125 RKVVETEDAYKFAGQMGISL---------FETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 183 K------------PKKRKRKARPC 194
           K            PK  KRK R C
Sbjct: 176 KQQQQQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 77.3 bits (191), Expect = 3e-18
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------DGSTVNLGLW 60
            K V VGDG  GKT  +  + +  F   YV T+       V V       +   +   +W
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLDFHTNRGKIRFNVW 54

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
           DTAGQE +  LR   Y      ++ F + S+ +Y+N+   W  +L      +PIVL G K
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 113

Query: 121 QDLREDK 127
            D+++ K
Sbjct: 114 VDIKDRK 120

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 67
           K V +GD   GK+ +L       FP + +    D  + + + VDG T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQ 121
                 +  + AD  LL + L  + S   +S    W+P LR     +P++LVG K 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 20/177 (11%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
           +K   +GD  +GKT +++ Y    F  +Y+ T+  NF    + + G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD---- 122
           ++  + PL  + A   L  F L  K++  +I K+W  + R +  T   +LVGTK D    
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDLFAD 119

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           L  ++Q  I         T Q  +  K + A + I CS+    NV+ +F    K VL
Sbjct: 120 LPPEEQEEI---------TKQARKYAKAMKAPL-IFCSTSHSINVQKIF----KFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 19/171 (11%)

Query: 9   KCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVV---VDGSTVNLGLWDTA 63
           +C  VGD AVGK+ ++  + S+  TF  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV--PIVLVGTKQ 121
           GQE ++ +    +    V  + + + ++ S+ N S +WI  +R ++  +  P VLVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVLVGNKC 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
           DL + ++          +  AQ + L +      Y E S+K     +  F 
Sbjct: 121 DLTDRRE----------VDAAQAQALAQANTLKFY-ETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGL 59
            M+     K + VGDG VGKT  +  + +  F   Y+PT+  +        +   +   +
Sbjct: 3   QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNV 62

Query: 60  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGT 119
           WDTAGQE +  LR   Y      ++ F + S+ +Y+N+   W  ++      +PIVLVG 
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGN 121

Query: 120 KQDLREDK 127
           K D+++ +
Sbjct: 122 KVDVKDRQ 129

Length = 215

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 72.4 bits (177), Expect = 6e-16
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 11  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYN 69
           + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 70  RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLREDKQ 128
            +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG K D   D++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                     IT  QGE+  + I    + E S+K   NV  +F
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 30/194 (15%)

Query: 9   KCVTVGDGAVGKTCM-LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           + V +GD  VGK+ +  I        + Y  +  D +   V VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR------HYAPTVPIVLVGTKQ 121
              L     +  D +++ +S+  ++S+E  S     ELR        A  +PI+LVG K 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKAS-----ELRIQLRRARQAEDIPIILVGNKS 116

Query: 122 DL---REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           DL   RE             ++  +G     +     +IE S+  Q NV  +F+  ++ V
Sbjct: 117 DLVRSRE-------------VSVQEGRACAVVF-DCKFIETSAALQHNVDELFEGIVRQV 162

Query: 179 -LQPPKPKKRKRKA 191
            L+    +K  R+ 
Sbjct: 163 RLRRDSKEKNTRRM 176

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 20/169 (11%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +    S   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKW--IPELR-HYAPTVPIVLVGTKQD--- 122
             ++ LS      F+L +S+ SK S E +   +  I E++ +    +PI+LVG K D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            RE             +++++G  L +    A ++E S+KT  NV+ +F
Sbjct: 123 SRE-------------VSSSEGAALARTWNCA-FMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 12/133 (9%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----FDNFSANVVVDGSTV 55
            ++   F K V VGDG  GKT  +  + +  F   Y PT+       +F  N       +
Sbjct: 8   TVDYPSF-KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----GKI 62

Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV 115
               WDTAGQE +  LR   Y      ++ F + ++ +Y+N+   W  +L      +PIV
Sbjct: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIV 121

Query: 116 LVGTKQDLREDKQ 128
           L G K D++ ++Q
Sbjct: 122 LCGNKVDVK-NRQ 133

Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 15/187 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           + V +G   VGKT ++  +  +TF   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R LS +  D F L +S+    S+E +   ++ I E++     VPIV+VG K D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAE 119

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK--P 184
           +Q          +  A      +L     ++E S+K  +NV  VF   ++    P    P
Sbjct: 120 RQ----------VEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSP 169

Query: 185 KKRKRKA 191
             R+R+ 
Sbjct: 170 ALRRRRE 176

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 25/175 (14%)

Query: 11  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 70
           V +G   VGKT ++  +    F   Y PT+ D       + G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 71  LRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYA-------PTVPIVLVGTKQ 121
           +R LS    DVF+L FSL ++ S+E +   ++ I E +            +P+V+ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIG---AAVYIECSSKTQQNVKTVFDA 173
           D    ++              Q +E+++L+G      Y E S+K   N+  +F A
Sbjct: 124 DRDFPRE-------------VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           IK +++G+  VGK+C++  Y    F + Y+PT+  D     V V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY------APTVPIVLVGTK 120
           +Y  +R   Y+     LL + +  + S+E +   W+ E++           + +V+   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
            DL               ++  +G    +  G   Y E S+ T + V  +F  
Sbjct: 120 IDL----------TKHRAVSEDEGRLWAESKG-FKYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 17/178 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 66
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V+     + V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR---HYAP--TVPIVLVGTKQ 121
            +  +  + Y+GA   ++ F +   +++E +  KW  +L           +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DL++++               Q ++  K  G   + E S+K   N++      +K +L
Sbjct: 121 DLKKERLA---------KDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 63.4 bits (154), Expect = 9e-13
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 65
            +K + VGD  VGK  +L S    +  + Y   +  D  +  +++DG  V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
             +  +     RGA   +L + + ++ S++ I + WI E+  +AP VP +LVG +  L  
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDR-WIKEIDEHAPGVPKILVGNRLHLAF 124

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            +Q          + T Q +   +  G   + E S     N+   F    ++VL
Sbjct: 125 KRQ----------VATEQAQAYAERNGMTFF-EVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K V +GD  VGKT +L  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           ++ L  +  RGA   +L + + +  S E +  +++             +VG K DL E+ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 128 QYLINHPGATPITTA------QGEELKKL----------------IGAAVYIECSSKTQQ 165
                   A    +         E+ K                      +  E S+KT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 166 NVKTVFDAAIKVVL 179
           NV  +F+    +VL
Sbjct: 177 NVDELFEYLFNLVL 190

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 60.8 bits (147), Expect = 1e-11
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 71
           VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 72  RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           R   Y      ++ F + ++ +Y+N+   W  +L      +PIVL G K D+++ K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAG 64
            K + VG G VGKT +        F  D   T      ++      +   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QE Y+           ++LL F L +      +   W+ +++ +    P++LVGT  D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 125 EDKQ 128
            D+ 
Sbjct: 120 CDED 123

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 30  NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 88
           +TF  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   ++ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 89  ISKASYENISKKWIPE-LRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL 147
            ++ S+EN + KWI + L      V I LVG K DL + ++          +T  +G + 
Sbjct: 63  TNRQSFEN-TTKWIQDILNERGKDVIIALVGNKTDLGDLRK----------VTYEEGMQ- 110

Query: 148 KKLIGAAVYIECSSKTQQNVKTVF 171
           K      ++ E S+K   N+K +F
Sbjct: 111 KAQEYNTMFHETSAKAGHNIKVLF 134

Length = 176

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 58.7 bits (142), Expect = 7e-11
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTAGQ 65
           IK V +GDGA GKT ++  +    F   Y  T+  D FS  + + GS  V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVP-IVLVGTKQD 122
           +   ++      GA    L + + +  S+EN+      + ++   + T P +VLVG K D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 123 LREDKQ 128
           L  ++Q
Sbjct: 121 LEHNRQ 126

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWD---------T 62
           +G   VGKT ++  + +  FP +Y+PT     +   VV+ G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHY-APTVPIVLVGT 119
           AGQE +   R    R +  F+L + + S  S+  +   ++ I E R       PIV+VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 120 KQDLREDK---QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           K+D +  +   +++++              L +      Y+ECS+K   ++  +F   + 
Sbjct: 125 KRDQQRHRFAPRHVLSV-------------LVRKSWKCGYLECSAKYNWHILLLFKELLI 171

Query: 177 VVLQPPKPKKRKRKARPCIFL 197
                     R R   P + L
Sbjct: 172 SATT------RGRSTHPALRL 186

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 46.3 bits (110), Expect = 9e-07
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
           VG+   GK+ ++  Y + ++     P     F   V+VDG +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 73  PLSYRG-ADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLREDKQY 129
              + G  D  +  FSL  +AS++ +  +   +L  Y     +P++LVGT+     D   
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTVY-RLYHQLSSYRNISEIPLILVGTQ-----DA-- 110

Query: 130 LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKV 177
            I+      I  A+  +L   +    Y E  +    NV+ VF +AA K+
Sbjct: 111 -ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 24/122 (19%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
           VG    GKT ++    S  F  D +PTV   F+   V  G+ V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP---RFR 58

Query: 73  PL--SY-RGAD--VFLL------AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
            +   Y RG +  V+++         +     ++ + K   P L      +P++++G K 
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK---PSLEG----IPLLVLGNKN 111

Query: 122 DL 123
           DL
Sbjct: 112 DL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 28/170 (16%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             C  +G    GK+ +L ++   +F    Y PT+   ++ N V V G    L L +    
Sbjct: 5   FLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGED 64

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQD 122
           E+   L        DV  L +     +S  N S  +  E+         +P + V  K D
Sbjct: 65  EEAILLNDAELAACDVACLVYD----SSDPN-SFSYCAEVYKKYFMLGEIPCLFVAAKAD 119

Query: 123 LREDKQ------------YLINHPGATPITTAQGEELK----KLIGAAVY 156
           L E +Q              +  P     ++  G+       KL  AA Y
Sbjct: 120 LDEQQQRAEVQPDEFCRKLGLPPP--LHFSSRLGDSSNELFTKLATAAQY 167

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PTZ00099	176	rab6; Provisional	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.82
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.76
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
CHL00071	409	tufA elongation factor Tu	99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.74
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
PRK13351	687	elongation factor G; Reviewed	99.72
PRK00049	396	elongation factor Tu; Reviewed	99.71
COG0218	200	Predicted GTPase [General function prediction only	99.71
COG2262	411	HflX GTPases [General function prediction only]	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
COG0536	369	Obg Predicted GTPase [General function prediction	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.7
PLN00043	447	elongation factor 1-alpha; Provisional	99.7
COG1084	346	Predicted GTPase [General function prediction only	99.69
PTZ00141	446	elongation factor 1- alpha; Provisional	99.69
COG3596	296	Predicted GTPase [General function prediction only	99.68
PLN03126	478	Elongation factor Tu; Provisional	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
COG1163	365	DRG Predicted GTPase [General function prediction	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.65
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.65
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.64
PRK12739	691	elongation factor G; Reviewed	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.61
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.6
PRK00007	693	elongation factor G; Reviewed	99.59
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.59
PRK12740	668	elongation factor G; Reviewed	99.58
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.57
KOG0090	238	consensus Signal recognition particle receptor, be	99.57
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.57
PRK09866	741	hypothetical protein; Provisional	99.57
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.56
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.56
KOG1145	683	consensus Mitochondrial translation initiation fac	99.56
PRK09602	396	translation-associated GTPase; Reviewed	99.55
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.54
PRK14845	1049	translation initiation factor IF-2; Provisional	99.52
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
PRK13768	253	GTPase; Provisional	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.47
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.46
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.46
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.46
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.45
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.43
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.43
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.41
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.39
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.39
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
PTZ00258	390	GTP-binding protein; Provisional	99.38
PRK07560	731	elongation factor EF-2; Reviewed	99.38
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.37
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.37
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.37
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.36
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.35
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.31
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.31
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.3
PRK09601	364	GTP-binding protein YchF; Reviewed	99.28
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.27
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.27
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.21
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.2
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.19
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.19
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.19
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.15
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.13
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.09
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.07
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.05
PRK00098	298	GTPase RsgA; Reviewed	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.01
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.01
KOG2486	320	consensus Predicted GTPase [General function predi	99.01
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.98
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.97
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.97
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.97
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.94
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.93
KOG1143	591	consensus Predicted translation elongation factor	98.93
PRK12289	352	GTPase RsgA; Reviewed	98.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.91
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.9
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.9
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.89
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.88
PRK12288	347	GTPase RsgA; Reviewed	98.83
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
KOG0410	410	consensus Predicted GTP binding protein [General f	98.81
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.75
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.74
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.72
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.67
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.64
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.63
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.62
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.61
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.6
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.59
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.56
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.55
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.55
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.55
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.52
PRK12288	347	GTPase RsgA; Reviewed	98.5
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.5
KOG0460	449	consensus Mitochondrial translation elongation fac	98.5
COG1161	322	Predicted GTPases [General function prediction onl	98.49
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.49
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.49
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.45
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.45
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.43
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.42
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.42
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.37
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.36
PRK13796	365	GTPase YqeH; Provisional	98.35
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.34
PRK12289	352	GTPase RsgA; Reviewed	98.32
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.32
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.31
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.3
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.3
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.25
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.25
COG1162	301	Predicted GTPases [General function prediction onl	98.24
PRK01889	356	GTPase RsgA; Reviewed	98.24
PRK10416	318	signal recognition particle-docking protein FtsY;	98.23
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.18
PRK00098	298	GTPase RsgA; Reviewed	98.17
PRK14974	336	cell division protein FtsY; Provisional	98.16
PRK13796	365	GTPase YqeH; Provisional	98.15
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.15
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.13
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.11
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.11
cd03112	158	CobW_like The function of this protein family is u	98.07
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.06
PRK13695	174	putative NTPase; Provisional	98.05
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.97
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.91
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.88
COG3523	1188	IcmF Type VI protein secretion system component Va	97.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.85
COG1162	301	Predicted GTPases [General function prediction onl	97.84
KOG1533	290	consensus Predicted GTPase [General function predi	97.78
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.75
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.74
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.7
PRK08118	167	topology modulation protein; Reviewed	97.68
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.68
PRK14738	206	gmk guanylate kinase; Provisional	97.65
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.65
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.63
KOG2484	435	consensus GTPase [General function prediction only	97.62
PRK07261	171	topology modulation protein; Provisional	97.62
PRK05480	209	uridine/cytidine kinase; Provisional	97.61
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.61
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.58
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.58
PRK10867	433	signal recognition particle protein; Provisional	97.56
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.56
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.55
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.54
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.53
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.52
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.52
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.51
PRK14530	215	adenylate kinase; Provisional	97.51
TIGR00959	428	ffh signal recognition particle protein. This mode	97.5
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.49
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.48
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.47
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.46
PRK14737	186	gmk guanylate kinase; Provisional	97.45
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.44
PTZ00088	229	adenylate kinase 1; Provisional	97.43
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.39
PRK00300	205	gmk guanylate kinase; Provisional	97.36
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.36
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.36
PRK06217	183	hypothetical protein; Validated	97.33
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.3
PRK01889	356	GTPase RsgA; Reviewed	97.29
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.29
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.29
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.29
PRK03839	180	putative kinase; Provisional	97.27
PF00004	132	AAA: ATPase family associated with various cellula	97.27
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.25
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.25
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.25
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.24
PRK05057	172	aroK shikimate kinase I; Reviewed	97.24
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.24
smart00382	148	AAA ATPases associated with a variety of cellular	97.23
PRK08233	182	hypothetical protein; Provisional	97.22
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.22
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.21
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.21
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.2
PRK13949	169	shikimate kinase; Provisional	97.19
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.18
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.17
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.17
PRK14532	188	adenylate kinase; Provisional	97.15
PHA00729	226	NTP-binding motif containing protein	97.15
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.14
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.12
PRK14531	183	adenylate kinase; Provisional	97.09
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.09
PRK00625	173	shikimate kinase; Provisional	97.08
PRK05541	176	adenylylsulfate kinase; Provisional	97.07
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.07
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.07
PLN02200	234	adenylate kinase family protein	97.06
PRK02496	184	adk adenylate kinase; Provisional	97.06
PRK06547	172	hypothetical protein; Provisional	97.05
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.05
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.04
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.03
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.02
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.01
cd03110	179	Fer4_NifH_child This protein family's function is	97.01
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.0
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.99
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.99
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.97
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.96
PRK14527	191	adenylate kinase; Provisional	96.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.94
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.94
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.94
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.94
PRK04195	482	replication factor C large subunit; Provisional	96.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.94
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.92
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.92
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.91
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.9
PRK04040	188	adenylate kinase; Provisional	96.9

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-43  Score=241.48  Aligned_cols=166  Identities=35%  Similarity=0.686  Sum_probs=155.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.|||+|+|++|||||+|+.||.++.|++.+..|+ .+...+.+.++++.+.+|+|||+||++|+.+..+++++||++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            568999999999999999999999999999999999 4666788999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||+++++||..+ ..|+..+.++. +++|.++||||+|+.+.+.          ++.++++.|+.+++.++++++||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 99999999988 6789999999999988776          999999999999999559999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++.+++++|..+...+...
T Consensus       156 ~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             CccCHHHHHHHHHHHHHHh
Confidence            9999999999999877543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-41  Score=233.34  Aligned_cols=168  Identities=32%  Similarity=0.622  Sum_probs=154.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+|++++|+.+||||||+.||..+.|.+...+|+ ..++...+.+++..+.|.+|||+|+++|+++.++++++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            346999999999999999999999999988778888 5777889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||+++.+||..+ +.|+..+.+.. +++-+.+||||+|+.+.+.          +..+++..+++..+. .|+++||+
T Consensus        83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK  150 (200)
T KOG0092|consen   83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK  150 (200)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence            99999999999999 99999999887 4666778999999988665          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCc
Q 029177          163 TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      ++.|++++|..|.+.+......
T Consensus       151 Tg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  151 TGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             cccCHHHHHHHHHHhccCcccc
Confidence            9999999999999998766544

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.4e-40  Score=238.17  Aligned_cols=188  Identities=55%  Similarity=0.986  Sum_probs=158.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+||+++|++|||||||+.+|..+.|...+.+|..+.+...+.+++..+.+++|||+|+++|+.+++.+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            34899999999999999999999999999999998777776777899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||+++++||+.+...|...+....+++|+++||||+|+.+....  .......+.+..+++.++++..+..+++++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999999955788877776678999999999999754321  0111122347788999999999966899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177          164 QQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL  197 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~  197 (197)
                      |+|++++|.++++.+..+.. .+   ++++|.+|
T Consensus       162 g~~v~e~f~~l~~~~~~~~~-~~---~~~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTP-IK---DTKSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhcccc-cc---CCCCceeC
Confidence            99999999999998877542 22   22248775

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.8e-39  Score=229.18  Aligned_cols=174  Identities=89%  Similarity=1.379  Sum_probs=153.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|+|||||+.+|..+.|..++.+|....+...+.+++..+.+++|||+|+++|+.++..+++++|++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999899999877777777889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                      +++++||+.+...|+..+....+++|+++||||+|+.+.+.....++..+.+..+++.++++..+..++++|||++|+|+
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999985689998887777899999999999976432112233445688999999999999767999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 029177          168 KTVFDAAIKVVLQP  181 (197)
Q Consensus       168 ~~~~~~i~~~~~~~  181 (197)
                      +++|+.+++.++.+
T Consensus       162 ~~~F~~~~~~~~~~  175 (176)
T cd04133         162 KAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.7e-39  Score=237.37  Aligned_cols=176  Identities=38%  Similarity=0.690  Sum_probs=153.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            56899999999999999999999999999999998777777788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||+++++||+.+...|+..+....++.|+++||||+|+.+.....  ......+.++.+++.+++++++..+|++|||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999985478999998877889999999999986432110  011123468899999999999986799999999


Q ss_pred             CC-CHHHHHHHHHHHHcCC
Q 029177          164 QQ-NVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~-~i~~~~~~i~~~~~~~  181 (197)
                      |+ |++++|..++..+++.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            98 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.9e-39  Score=231.50  Aligned_cols=167  Identities=29%  Similarity=0.487  Sum_probs=149.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+.+|..+.+...+.++.. +.....+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4579999999999999999999999988877777764 444566778898999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||++++++|+.+ ..|++.+....++.|++|||||+|+.+.+.          ++.++++++++..+. +++++||++
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~  151 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC  151 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence            99999999999999 889999988778999999999999976544          888999999999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~~  183 (197)
                      |.|++++|+++++.+.....
T Consensus       152 g~~V~~~F~~l~~~i~~~~~  171 (189)
T cd04121         152 NFNITESFTELARIVLMRHG  171 (189)
T ss_pred             CCCHHHHHHHHHHHHHHhcC
Confidence            99999999999987764433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.5e-39  Score=230.09  Aligned_cols=177  Identities=38%  Similarity=0.726  Sum_probs=154.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            45578999999999999999999999999999999987777778888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||+++++||+.+...|...+....++.|+++||||+|+.+.....  ......+.++.+++.++++++++.+|++|||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997678999998887889999999999996531100  0011234589999999999999768999999


Q ss_pred             cCCCC-HHHHHHHHHHHHcC
Q 029177          162 KTQQN-VKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~-i~~~~~~i~~~~~~  180 (197)
                      ++|+| ++++|..+++.+++
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-39  Score=227.33  Aligned_cols=167  Identities=34%  Similarity=0.641  Sum_probs=155.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      -++.+||+++|++|||||+|+.+|..+.|...+..|. .++...++.+++..+.+|+|||+||++|+.+...++++|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            3578999999999999999999999999999999998 466788899999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||+++..||+.+ ..|+..+.++.+ ++|+++||||+|+...+.          ++.+.++.+|.++|. +|+|+||
T Consensus        89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA  156 (207)
T KOG0078|consen   89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA  156 (207)
T ss_pred             EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence            999999999999999 679999999984 899999999999988655          999999999999997 9999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++|.||+++|..+.+.+..+.
T Consensus       157 k~~~NI~eaF~~La~~i~~k~  177 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQKL  177 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhhc
Confidence            999999999999999887443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-39  Score=222.10  Aligned_cols=165  Identities=34%  Similarity=0.575  Sum_probs=153.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+|++++|+.+|||||||+||..+.|...|.+|+ .++.+.++.+.+.++.+|+|||+||++|+.+.+.++++++++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            356999999999999999999999999999999999 5777899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-P-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||+++..||+.. .+|++.+.... + ++-+++||||.||.+.++          ++.+++...+++++. .|+++||
T Consensus       100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsa  167 (221)
T KOG0094|consen  100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSA  167 (221)
T ss_pred             EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEecc
Confidence            99999999999999 89999998776 3 467789999999998876          999999999999998 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +.|+|++++|..|..++..+
T Consensus       168 k~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  168 KAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             cCCCCHHHHHHHHHHhccCc
Confidence            99999999999998887655

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.1e-38  Score=227.04  Aligned_cols=186  Identities=41%  Similarity=0.707  Sum_probs=157.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||++|++.|...+..+++++|++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            89999999999999999999999988888888777766777888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           89 ISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      +++++|+.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..++...+..+++++||++|+|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  161 (189)
T cd04134          82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG  161 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence            999999998557988888777789999999999997654211  111222346778888999888866899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177          167 VKTVFDAAIKVVLQPPKPKKRKRKARPCIFL  197 (197)
Q Consensus       167 i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~  197 (197)
                      ++++|.++++.+.....   +.++.+.|+||
T Consensus       162 v~e~f~~l~~~~~~~~~---~~~~~~~~~~~  189 (189)
T cd04134         162 VNEAFTEAARVALNVRP---PHPHSSACTIA  189 (189)
T ss_pred             HHHHHHHHHHHHhcccc---cCcCCCcceeC
Confidence            99999999999976555   44566677765

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.5e-38  Score=225.70  Aligned_cols=172  Identities=37%  Similarity=0.738  Sum_probs=150.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++|||+|++.|..+++.+++++|++++|||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            79999999999999999999999999999999877777778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      +++++||+.+...|...+....++.|+++||||+|+.+.....  ......++++.+++.+++++++..+++++||++|+
T Consensus        82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~  161 (178)
T cd04131          82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE  161 (178)
T ss_pred             CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence            9999999996578999998887899999999999996521100  01112346889999999999997789999999999


Q ss_pred             C-HHHHHHHHHHHHc
Q 029177          166 N-VKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~-i~~~~~~i~~~~~  179 (197)
                      + ++++|..+++.++
T Consensus       162 ~~v~~~F~~~~~~~~  176 (178)
T cd04131         162 KSVRDIFHVATMACL  176 (178)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            5 9999999999765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.7e-38  Score=230.97  Aligned_cols=174  Identities=37%  Similarity=0.722  Sum_probs=152.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+|+|++|||||||+++|..+.|+..+.||....+...+.+++..+.+.+||++|++.|..+++.+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999877777778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++|+.+...|...+....++.|+++||||+|+.++....  .......+++.+++..++++.++.+|+||||++++
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            9999999999778888887777899999999999997642111  11122345888999999999997799999999998


Q ss_pred             C-HHHHHHHHHHHHcCC
Q 029177          166 N-VKTVFDAAIKVVLQP  181 (197)
Q Consensus       166 ~-i~~~~~~i~~~~~~~  181 (197)
                      + ++++|..++.+++..
T Consensus       162 ~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         162 RSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            5 999999999987764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.3e-38  Score=229.91  Aligned_cols=177  Identities=35%  Similarity=0.633  Sum_probs=151.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|.+|||||||+++|..+.|...+.++..+.+...+.+++..+.+++||+||+++|...+..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888766666777888889999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           89 ISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      +++++++.+ ..|+..+....    ++.|+++|+||+|+.+...          +...++..+++.++. +++++||++|
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999998 67877776543    4789999999999976443          677778889988886 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCCc---------ccccCCCCCcccC
Q 029177          165 QNVKTVFDAAIKVVLQPPKP---------KKRKRKARPCIFL  197 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~~~~~---------~~~~~k~~~c~~~  197 (197)
                      +|++++|.++++.+...+..         .++.+|+++||+|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99999999999877533222         3456788888876

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.4e-38  Score=227.14  Aligned_cols=184  Identities=49%  Similarity=0.882  Sum_probs=157.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.++.+...+.++....+...+... +..+.+++|||||++++...++.+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888888866666666665 77789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      |++++++++.+...|+..+....++.|+++|+||+|+....      ...+.+..+++.+++..++..+++++||++|+|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK------NLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            99999999998667888777666789999999999996532      112346788999999999876899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCc--ccccCCCCCcccC
Q 029177          167 VKTVFDAAIKVVLQPPKP--KKRKRKARPCIFL  197 (197)
Q Consensus       167 i~~~~~~i~~~~~~~~~~--~~~~~k~~~c~~~  197 (197)
                      ++++|..+++.+......  .++++++++|++|
T Consensus       155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            999999999998876655  3456777778776

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=218.07  Aligned_cols=171  Identities=32%  Similarity=0.557  Sum_probs=155.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +...+||+++|++|+|||||++++..++|...+..|+ .+...+.+.+++..+.+++|||+||++|.++.-.+++++|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            3568999999999999999999999999999999998 477788999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +++||++++.||+.+ ..|.+.+-.+.     ...|+||+|||.|+.+..        .+.++.+.+++||...|.+|||
T Consensus        86 vlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyf  156 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYF  156 (210)
T ss_pred             EEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeE
Confidence            999999999999999 88988776554     258999999999997631        2459999999999999999999


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ++|||+..|+.++|..+.+.++....
T Consensus       157 EtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  157 ETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             EecccccccHHHHHHHHHHHHHhccc
Confidence            99999999999999999998876664

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-38  Score=218.63  Aligned_cols=168  Identities=30%  Similarity=0.584  Sum_probs=155.0

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      |.....+|++++|+.|||||+|+.+|...+|.+.+..|++ +.-...+.++++.+.+++|||+||+.|++....+++.+.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            3455679999999999999999999999999999988885 555778899999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      ++++|||+++++||..+ ..|+..++.+. ++.-++++|||+|+...+.          ++.+++++||++.+. .++++
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET  148 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET  148 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence            99999999999999999 89999999986 8999999999999988765          999999999999987 79999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||++++|++|.|..+...+++.
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~  170 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRK  170 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998877644

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.8e-37  Score=221.05  Aligned_cols=172  Identities=55%  Similarity=0.990  Sum_probs=149.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+++||++|+++|...+..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999999999889999987777767778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++++++.+...|...+....+++|+++|+||+|+.......  ......+.+..+++++++++.+..+++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            99999999998557988888777789999999999986542211  1122335688899999999998668999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKVV  178 (197)
Q Consensus       165 ~~i~~~~~~i~~~~  178 (197)
                      +|++++|+.+++.+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.9e-37  Score=224.75  Aligned_cols=163  Identities=29%  Similarity=0.554  Sum_probs=144.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +.|+++|++|||||||+++|..+.|...+.+|.. +.+...+.+++..+.+++||++|+++|+.++..+++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4689999999999999999999999888888875 555667888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |+++++||+.+ ..|+..+.... ++.|+++||||+|+...+.          +..+++.+++++....+++++||++|+
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~  149 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF  149 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            99999999999 78988887665 5899999999999976443          888889999988633489999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 029177          166 NVKTVFDAAIKVVLQP  181 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~  181 (197)
                      |++++|.++++.+.+.
T Consensus       150 gV~e~F~~l~~~~~~~  165 (202)
T cd04120         150 NVDEIFLKLVDDILKK  165 (202)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999987653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=223.38  Aligned_cols=180  Identities=34%  Similarity=0.588  Sum_probs=152.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++|||||+++|..++..+++.+|++++|
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            45899999999999999999999999988888888777777788899889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++
T Consensus        84 ~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak~  151 (189)
T PTZ00369         84 YSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAKQ  151 (189)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCCC
Confidence            999999999999 67877776543  4889999999999865443          677788888888886 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCcc----cccCCCCCcccC
Q 029177          164 QQNVKTVFDAAIKVVLQPPKPK----KRKRKARPCIFL  197 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~~~~----~~~~k~~~c~~~  197 (197)
                      |.|++++|.++++.+.+.....    +.+++++-|+||
T Consensus       152 ~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  189 (189)
T PTZ00369        152 RVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL  189 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence            9999999999998776543322    233444447765

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=207.58  Aligned_cols=166  Identities=31%  Similarity=0.628  Sum_probs=151.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||++||++|||||||+.+|..+.|.+....|+ .++-.+.+.+++..+.+.+|||+||++|+.+.+.++++|.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            346999999999999999999999999987776666 4666788899999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++.+++|..+ ..|++.+..++  +++-.++|+||+|...++.          +..+++..|++.+++ .|+++||
T Consensus        89 lVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SA  156 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSA  156 (209)
T ss_pred             EEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcch
Confidence            99999999999999 99999998887  5777789999999876555          999999999999998 7999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++.+|++..|++++..++..+
T Consensus       157 kt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  157 KTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             hhhccHHHHHHHHHHHHhcCc
Confidence            999999999999999887543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=5.5e-37  Score=217.97  Aligned_cols=164  Identities=25%  Similarity=0.494  Sum_probs=146.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|.+|||||||+++|..+.+...+.++....+...+.+++..+.+++||+||++++..++..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            48999999999999999999999999888888887777777888998899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++.||+.+ ..|...+....  +++|+++|+||+|+.+.+.          ++.+++..+++..+. +++++||++|
T Consensus        82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~  149 (172)
T cd04141          82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR  149 (172)
T ss_pred             ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence            99999999999 66777776542  5799999999999976543          788899999999987 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCCC
Q 029177          165 QNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~~~  182 (197)
                      .|++++|+++++.+.+..
T Consensus       150 ~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         150 HYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887533

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1.6e-36  Score=215.90  Aligned_cols=170  Identities=65%  Similarity=1.110  Sum_probs=147.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+.++..+.|..++.++....+...+..++..+.+++|||+|++.+...+..+++++|++++|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999999999899898877777777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++|+.+...|+..+....++.|+++|+||+|+.+.....  ......+.++.+++.+++++++..+++++||++|+
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  161 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK  161 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence            9999999998567888887776789999999999996532110  11122346889999999999997689999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|+.+++.
T Consensus       162 ~i~~~f~~l~~~  173 (174)
T cd01871         162 GLKTVFDEAIRA  173 (174)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.2e-38  Score=208.50  Aligned_cols=164  Identities=32%  Similarity=0.615  Sum_probs=153.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..++.+|+|++|+|||+|+.+|..+.|..+|..|++ +....++.++|..+.+++||++|++.|+.+...++++.+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            467899999999999999999999999999999884 6667789999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |||+++.+||... .+|++.++..++.+|-++||||.|..+.+.          +..++++.|+.+.++ .+|++||+++
T Consensus        87 VYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~  154 (198)
T KOG0079|consen   87 VYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKEN  154 (198)
T ss_pred             EEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhc
Confidence            9999999999999 999999999999999999999999987665          899999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029177          165 QNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~~  181 (197)
                      +|++..|.-|.+.+++.
T Consensus       155 ~NvE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  155 ENVEAMFHCITKQVLQA  171 (198)
T ss_pred             ccchHHHHHHHHHHHHH
Confidence            99999999988876543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.1e-36  Score=220.18  Aligned_cols=165  Identities=27%  Similarity=0.437  Sum_probs=143.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +||+++|++|||||||+++|.++.+...+.+|... .....+.++ +..+.+++||+||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999999998888888753 445566777 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ||++++++++.+ ..|...+....     .++|+++|+||+|+...+.          +..+++.++++..+..+++++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999999 78887776432     5789999999999975333          7888999999999966899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCCCC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      |++|+|++++|.++++.+....+
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~~  172 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILANDK  172 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhch
Confidence            99999999999999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-37  Score=214.52  Aligned_cols=165  Identities=33%  Similarity=0.594  Sum_probs=153.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.|||+++|+++||||-|+.||..+.|..+..+|+ .+.....+.++++.+..++|||+||++|+.....+++++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            468999999999999999999999999999998998 4666788999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++.+.+|+.+ .+|+..++.+. +++++++||||+||.+.+.          ++.++++.++...+. .++++||.
T Consensus        92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl  159 (222)
T KOG0087|consen   92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL  159 (222)
T ss_pred             EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence            99999999999988 99999999998 7999999999999988655          999999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++.|++++|..++..+++.
T Consensus       160 ~~tNVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  160 DATNVEKAFERVLTEIYKI  178 (222)
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            9999999999988877543

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=5.3e-37  Score=216.17  Aligned_cols=179  Identities=64%  Similarity=1.103  Sum_probs=166.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+|++|||+.++|||+|+..+..+.|+..|.||..+.|+..+.++ ++.+.+.+|||+||++|..+++..+..+|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +||++++++|++++...|+..+..+++++|+++||+|.||..+..-  ...+....+++.+++..++++.|+..|+++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            9999999999999999999999999999999999999999954321  24455667899999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      +++.|++++|+..+..++..++
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999998876

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.6e-36  Score=216.83  Aligned_cols=165  Identities=31%  Similarity=0.573  Sum_probs=145.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.++.+...+.+|.. +.....+.+++..+.+.+||+||++.+...+..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            3568999999999999999999999998877878774 444566777888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||++++++++.+ ..|+..+....+..|+++|+||+|+.+...          +..+++..+++..+. +++++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999999 789998887778899999999999976443          677888889988885 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029177          164 QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~  181 (197)
                      |.|++++|+++.+.++..
T Consensus       152 ~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         152 NINVEEMFNCITELVLRA  169 (199)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999988654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.3e-35  Score=211.30  Aligned_cols=171  Identities=61%  Similarity=1.054  Sum_probs=149.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   89 (197)
                      |+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888888887777777888898899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177           90 SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus        90 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                      ++++++.+...|+..+....++.|+++|+||+|+......  .......+.+..+++.++++..+..+++++||++|+|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            9999999866799998887789999999999999763321  11223334578889999999999778999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 029177          168 KTVFDAAIKVVLQ  180 (197)
Q Consensus       168 ~~~~~~i~~~~~~  180 (197)
                      +++|+.+++.+++
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.1e-35  Score=218.46  Aligned_cols=162  Identities=28%  Similarity=0.457  Sum_probs=142.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +||+++|++|||||||+++|.++.+...+.+|.. +.+...+.+++ ..+.+++||++|++.+...+..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888888884 55666777754 568999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           86 FSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ||++++++++.+ ..|...+....    .+.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999999 78988887664    3568999999999975443          788889999999986 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|+|++++|+++.+.+...
T Consensus       149 ktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999988643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.5e-35  Score=209.52  Aligned_cols=162  Identities=31%  Similarity=0.634  Sum_probs=142.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|..+.+...+.++....+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999999888877765443 45567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+...          ++.+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999999 78888776554 6789999999999976543          778889999998886 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|.++++.+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999987743

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2e-35  Score=208.05  Aligned_cols=159  Identities=30%  Similarity=0.590  Sum_probs=140.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||++++..+.+...+.+++.+.+...+.+++..+.+++||+||+++|...+..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888776667778889988999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.+ ..|...+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++|+
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd04136          82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence            9999999998 67777776543  5799999999999976443          667778888888884 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|+++++.+
T Consensus       150 ~v~~l~~~l~~~~  162 (163)
T cd04136         150 NVDEVFADLVRQI  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=5.7e-35  Score=210.54  Aligned_cols=177  Identities=29%  Similarity=0.514  Sum_probs=150.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.++.+...+.++... .....+.+++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998777777753 33556777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |+++++++..+ ..|+..+.... .+.|+++++||+|+.+...          +..+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999999 67988887765 4689999999999976543          777888899988887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCcc--------cccCCCCCccc
Q 029177          166 NVKTVFDAAIKVVLQPPKPK--------KRKRKARPCIF  196 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~~~~~--------~~~~k~~~c~~  196 (197)
                      |++++|.++++.+.......        +...|+++|.+
T Consensus       149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence            99999999999886543332        34567777765

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.3e-35  Score=207.32  Aligned_cols=160  Identities=28%  Similarity=0.577  Sum_probs=141.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|.+|||||||++++..+.+...+.+++...+...+.+++..+.+++||+||++.+..++..+++++|++++|||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS   81 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence            69999999999999999999999888888888877677778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++.+++.+ ..|...+....  ++.|+++|+||+|+.+...          +..+++.++++..+. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (164)
T cd04175          82 ITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAKI  149 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCCC
Confidence            9999999998 66766665433  6899999999999976543          666777888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|.++.+.+.
T Consensus       150 ~v~~~~~~l~~~l~  163 (164)
T cd04175         150 NVNEIFYDLVRQIN  163 (164)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.2e-35  Score=206.94  Aligned_cols=163  Identities=30%  Similarity=0.592  Sum_probs=144.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|+|||||+++|.++.+...+.++... .....+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999999998888888754 344567788888999999999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..++..++. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999999 67988887764 5799999999999986543          677888889988887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |.|++++|.++.+.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=6.1e-35  Score=210.86  Aligned_cols=162  Identities=37%  Similarity=0.688  Sum_probs=140.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +||+++|++|||||||+++|..+.+.. .+.++....+ ...+.+++..+.+++||+||++++...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 5566664333 44567788889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||++++++++.+ ..|+..+.... .++|+++|+||+|+...+.          +..+++..++..++. +++++||++|
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999999 77888888766 4789999999999975443          677788889988886 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029177          165 QNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~~  181 (197)
                      +|++++|.++.+.+...
T Consensus       149 ~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         149 LNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988665

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.8e-34  Score=205.34  Aligned_cols=172  Identities=56%  Similarity=1.016  Sum_probs=148.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|+|||||+++|..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++.+++.+...|...+....++.|+++|+||+|+.+....  .......+.+..+++..+++..+..+++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            999999999866788888766678999999999998654311  112222345778899999999998789999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|+.+++.++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=7.5e-35  Score=204.95  Aligned_cols=158  Identities=34%  Similarity=0.603  Sum_probs=140.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|..+.+.+.+.++... .....+.+++..+.+++||++|++++...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888753 44566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++|.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 78888887665 4799999999999976543          778899999999886 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|.+|.+.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=9.3e-35  Score=212.90  Aligned_cols=168  Identities=28%  Similarity=0.435  Sum_probs=132.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|.+|||||||+++|..+.|.. +.++....+..   .....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999864 45665332221   11245789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh---------hcCCCCCCCccHHHHHHHHHHcCC-----
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY---------LINHPGATPITTAQGEELKKLIGA-----  153 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----  153 (197)
                      ++++++|+.+...|........+++|+++|+||+|+.+....         .......+.+..+++..++++.+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999944444443333367999999999999752110         011122456899999999998872     


Q ss_pred             --------cEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          154 --------AVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       154 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                              .+|+++||++|+|++++|..+++.++
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                    47999999999999999999998765

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=2e-34  Score=205.11  Aligned_cols=170  Identities=54%  Similarity=0.963  Sum_probs=146.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|+|||||++++.++.+..++.+|..+.+...+.+++..+.+++||+||++.+...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            58999999999999999999999999899898877777778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++|+.+...|+..+....++.|+++++||+|+......  .......+.+..+++..+++..+..+++++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            999999999856788888766678999999999998653210  011123356788899999999997789999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|+.++.+
T Consensus       161 ~v~~lf~~~~~~  172 (173)
T cd04130         161 NLKEVFDTAILA  172 (173)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-36  Score=199.28  Aligned_cols=172  Identities=30%  Similarity=0.548  Sum_probs=155.2

Q ss_pred             CCCCc--ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC
Q 029177            1 MMNTA--RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR   77 (197)
Q Consensus         1 ~~~~~--~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   77 (197)
                      ||++.  ..+|++++|+.|+|||+|+.+|..+.|.++...|.+ ++-+..+.+.++.+.+++|||+||++|++....+++
T Consensus         1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR   80 (214)
T KOG0086|consen    1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   80 (214)
T ss_pred             CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence            66554  578999999999999999999999999888877874 555777888999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|.++++|||++++++|+.+ ..|+...+... +++-+++++||.|+.+.++          ++..++..|+++... .+
T Consensus        81 GAAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~f  148 (214)
T KOG0086|consen   81 GAAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MF  148 (214)
T ss_pred             cccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-ee
Confidence            99999999999999999999 89999888776 6888999999999998876          999999999999997 89


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      .++||++|+|++|.|-...+.++.+.+.
T Consensus       149 lETSa~TGeNVEEaFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  149 LETSALTGENVEEAFLKCARTILNKIES  176 (214)
T ss_pred             eeecccccccHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998888765433

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=6.8e-35  Score=205.23  Aligned_cols=159  Identities=40%  Similarity=0.841  Sum_probs=148.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      ||+++|++|||||||+++|.++.+...+.++. .+.+...+..++..+.+++||++|++.+...+..+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999998887 67778888999999999999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           88 LISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      +++++|++.+ ..|+..+....+ +.|++++|||.|+.+.+.          ++.+++++++++++ .+|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~-~~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELG-VPYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence            9999999999 799999998886 799999999999987554          89999999999999 5999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 029177          167 VKTVFDAAIKVVL  179 (197)
Q Consensus       167 i~~~~~~i~~~~~  179 (197)
                      +.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.6e-34  Score=204.08  Aligned_cols=160  Identities=30%  Similarity=0.628  Sum_probs=140.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.++.+...+.++... .....+..++..+.+++||+||++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888887753 33445666778899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||++|.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999999 78988887765 5789999999999976543          667888889988887 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|+++...+.
T Consensus       150 gv~~l~~~l~~~~~  163 (165)
T cd01865         150 NVKQVFERLVDIIC  163 (165)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=9.4e-35  Score=207.94  Aligned_cols=163  Identities=36%  Similarity=0.618  Sum_probs=141.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC----------CeEEEEEEEecCCCcCccccccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~   74 (197)
                      +.+||+++|++|||||||+++|..+.+...+.++.. +.....+.+.          +..+.+++||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            568999999999999999999999999888888774 3334444443          45689999999999999999999


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|++++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++.++++..+
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~  151 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG  151 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence            99999999999999999999999 78988887653  5789999999999976543          77888999999998


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      . +++++||++|.|++++|+++.+.+++
T Consensus       152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         152 I-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            6 89999999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=195.90  Aligned_cols=165  Identities=30%  Similarity=0.619  Sum_probs=149.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+|++++|.+.||||||+.++.+..|...+.+|.+ +.-.+++--..+.+.+|+|||+|+++|+.+...++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            457999999999999999999999999988888874 4445556567778999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +||++|.+||..+ +.|..+++.++ .+.|+|+|+||||+...+.          ++.+.++.+++++|. .+|++||+.
T Consensus       100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~  167 (193)
T KOG0093|consen  100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE  167 (193)
T ss_pred             EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence            9999999999999 89999999887 7999999999999987765          999999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~  182 (197)
                      +.|++.+|+.++..+.++.
T Consensus       168 NinVk~~Fe~lv~~Ic~km  186 (193)
T KOG0093|consen  168 NINVKQVFERLVDIICDKM  186 (193)
T ss_pred             cccHHHHHHHHHHHHHHHh
Confidence            9999999999998875543

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.8e-34  Score=212.19  Aligned_cols=164  Identities=26%  Similarity=0.451  Sum_probs=142.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||++++..+.+...+.++.. +.+...+..++..+.+.+||++|++.|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4578999999999999999999999999888888874 445556677778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||++++++++.+ ..|+..+....+++|+++||||+|+....           +..+++ .+++..+. +++++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999999 78999888777889999999999996422           344444 67777775 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~  182 (197)
                      |+|++++|.++++.+....
T Consensus       157 ~~~i~~~f~~l~~~~~~~~  175 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGDP  175 (219)
T ss_pred             CCCHHHHHHHHHHHHHcCc
Confidence            9999999999999887553

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.2e-34  Score=206.18  Aligned_cols=170  Identities=28%  Similarity=0.546  Sum_probs=141.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|..+.|...+.+|.. +.+...+.+++..+.+++||++|++.|...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999888888885 444567888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.+ ..|+..+....+ ..| ++|+||+|+.....     ...+....+++.++++..+. +++++||++|+
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 789888876543 466 67899999963210     00111234677889988886 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCcc
Q 029177          166 NVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~~~~~  185 (197)
                      |++++|.++.+.+...+..+
T Consensus       153 ~v~~lf~~l~~~l~~~~~~~  172 (182)
T cd04128         153 NVQKIFKIVLAKAFDLPLTI  172 (182)
T ss_pred             CHHHHHHHHHHHHHhcCCCh
Confidence            99999999999887655443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.4e-34  Score=203.25  Aligned_cols=161  Identities=30%  Similarity=0.648  Sum_probs=142.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988877777764 44456677888889999999999999999989999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||+++++++..+ ..|+..+.... ++.|+++++||+|+.+...          +..+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999999 77888887765 5799999999999976543          777888999998887 8999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029177          165 QNVKTVFDAAIKVVL  179 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~  179 (197)
                      +|++++|.++.+.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=6.8e-34  Score=204.74  Aligned_cols=186  Identities=46%  Similarity=0.770  Sum_probs=152.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      .||+++|++|+|||||+++|..+.+...+.++....+...+.+++..+.+.+||++|++.+....+..++.+|+++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988887777777766666677778888899999999999888777778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                      ++++++++.+...|+..+....+++|+++|+||+|+.............+.+..+++..+++..+..++|++||++|+|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999986679999887778899999999999864321111112234567788899999999778999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcccccCCCCCccc
Q 029177          168 KTVFDAAIKVVLQPPKPKKRKRKARPCIF  196 (197)
Q Consensus       168 ~~~~~~i~~~~~~~~~~~~~~~k~~~c~~  196 (197)
                      +++|+++.+.++.-+++.   +..+||++
T Consensus       162 ~~~f~~l~~~~~~~~~~~---~~~~~~~~  187 (187)
T cd04129         162 DDVFEAATRAALLVRKSE---PGAGCCII  187 (187)
T ss_pred             HHHHHHHHHHHhcccCcc---cccCcccC
Confidence            999999998886655433   34556653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.5e-34  Score=202.62  Aligned_cols=159  Identities=30%  Similarity=0.584  Sum_probs=139.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d   81 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence            79999999999999999999999998888887766666777888888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.+ ..|...+....  .++|+++|+||+|+.....          +...++..++...+. +++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd04176          82 LVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSKT  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence            9999999998 67777766543  5899999999999965433          666677888888876 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|.++.+.+
T Consensus       150 ~v~~l~~~l~~~l  162 (163)
T cd04176         150 MVNELFAEIVRQM  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3e-34  Score=202.59  Aligned_cols=161  Identities=30%  Similarity=0.543  Sum_probs=141.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +.+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988777777664 4445667778888899999999999999888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.          +..+++.++++..+...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999998 78988887654 5899999999999976543          6778889999998887899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKV  177 (197)
Q Consensus       164 ~~~i~~~~~~i~~~  177 (197)
                      |.|++++|.++.+.
T Consensus       151 ~~~v~~~~~~l~~~  164 (165)
T cd01864         151 SQNVEEAFLLMATE  164 (165)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=5.5e-34  Score=200.57  Aligned_cols=159  Identities=28%  Similarity=0.509  Sum_probs=136.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|..+.+.+.+.++.. ..+.....+++..+.+++||++|++.|...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999998877776653 444556677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      |++++.+++.+ ..|+..+....++.|+++|+||+|+...             ...+...++...+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999998 7898888877678999999999998532             12345566777775 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 029177          167 VKTVFDAAIKVVLQP  181 (197)
Q Consensus       167 i~~~~~~i~~~~~~~  181 (197)
                      ++++|+.+++.+...
T Consensus       146 v~~l~~~l~~~~~~~  160 (161)
T cd04124         146 VVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.6e-34  Score=202.65  Aligned_cols=160  Identities=34%  Similarity=0.619  Sum_probs=140.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+...+.++..+.+......++..+.+++||+||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999988888888776677777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.+ ..|...+.+..  .+.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||++|.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999998 66766665443  4789999999999976443          677788888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|+++++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=4.6e-34  Score=206.28  Aligned_cols=168  Identities=42%  Similarity=0.652  Sum_probs=133.5

Q ss_pred             eEEEEEECCCCCCHHHHHH-HHhcC-----CCCCCCCCcee--eeeeEE--------EEECCeEEEEEEEecCCCcCccc
Q 029177            7 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~-~l~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~   70 (197)
                      .+||+++|++|||||||+. ++.++     .+...+.||..  +.+...        +.+++..+.+++|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999995 55544     34566777763  333322        256888999999999999752  


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh---------cCCCCCCCccH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL---------INHPGATPITT  141 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~  141 (197)
                      ....+++++|++++|||++++.||+.+...|...+....++.|+++||||+|+.+.....         ......+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            456688999999999999999999998557988888777789999999999996521000         00012356899


Q ss_pred             HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          142 AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++++++++++. +|++|||++|+|++++|..+++.
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999998 99999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=3.2e-34  Score=202.49  Aligned_cols=158  Identities=26%  Similarity=0.509  Sum_probs=137.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||++++.++.+...+.++....+...+..+...+.+.+||+||++++..++..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888766666666677788999999999999999888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           88 LISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ++++++++.+ ..|...+....    +++|+++|+||+|+.+.+.          +..+++..++..++. +++++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999998 67766665532    5799999999999976433          677788888888886 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKV  177 (197)
Q Consensus       164 ~~~i~~~~~~i~~~  177 (197)
                      |+|++++|++|+..
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-33  Score=204.72  Aligned_cols=166  Identities=33%  Similarity=0.534  Sum_probs=141.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +||+++|++|||||||+++|.++.+.. .+.++....+ ...+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 5777775444 55678899889999999999999999998899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ||++++.+++.+ ..|+..+....++.|+++|+||+|+.+..      ...+.+..+++.+++...+. +++++||++++
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQD------RSLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccccc------cccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999998 77888887766789999999999986432      11234566778888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 029177          166 NVKTVFDAAIKVVLQP  181 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~  181 (197)
                      |++++|+++.+.+.+.
T Consensus       153 gv~~l~~~i~~~~~~~  168 (193)
T cd04118         153 NVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999888654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=4.4e-34  Score=200.75  Aligned_cols=158  Identities=38%  Similarity=0.639  Sum_probs=139.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+...+.++..+.+...+.+++..+.+++||+||++++..++..+++.+|++++|||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            79999999999999999999999988888888877777777888888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++.+++.+ ..|...+....  .+.|+++|+||+|+.+..           ....++.+++...+. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (162)
T cd04138          82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTRQ  148 (162)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCCC
Confidence            9999999998 66766666543  579999999999996532           567778888888887 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|+++++.+
T Consensus       149 gi~~l~~~l~~~~  161 (162)
T cd04138         149 GVEEAFYTLVREI  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=8.6e-34  Score=200.49  Aligned_cols=159  Identities=29%  Similarity=0.508  Sum_probs=135.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||++++..+.+...+.++.. +.....+..++..+.+.+||++|++++...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999888878888774 334455566778899999999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      |++++++++.+ ..|+..+.....++|+++|+||+|+.+..           +. .+..++++..+. +++++||++|+|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999999 78998888877789999999999997321           22 334566666554 899999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 029177          167 VKTVFDAAIKVVLQ  180 (197)
Q Consensus       167 i~~~~~~i~~~~~~  180 (197)
                      ++++|+++++.+..
T Consensus       147 v~~~f~~l~~~~~~  160 (166)
T cd00877         147 FEKPFLWLARKLLG  160 (166)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999998865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=4.2e-34  Score=202.02  Aligned_cols=160  Identities=24%  Similarity=0.525  Sum_probs=140.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888875 334567778888899999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           87 SLISKASYENISKKWIPELRHYA------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      |++++++++.+ ..|+..+....      .+.|+++|+||+|+.+...          +..++...++...+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999998 78888887654      3689999999999974332          677888888888885 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHc
Q 029177          161 SKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~  179 (197)
                      |++++|++++|+++++.++
T Consensus       149 a~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.8e-34  Score=201.35  Aligned_cols=158  Identities=34%  Similarity=0.571  Sum_probs=139.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +||+++|++|+|||||+++|.++.+...+.++....+ ...+.+.  +..+.+++||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999988888888874433 4556666  777899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |||++++++++.+ ..|+..+....+++|+++|+||+|+.....          +..+++..+++.++. +++++||+++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999998 789888887778899999999999976543          677888999999987 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKV  177 (197)
Q Consensus       165 ~~i~~~~~~i~~~  177 (197)
                      .|++++|+++.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7.3e-34  Score=200.25  Aligned_cols=160  Identities=34%  Similarity=0.620  Sum_probs=140.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|+|||||++++.++.+...+.++....+.....+++..+.+++||+||++++...+..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999999988888888877666667778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++.+++.+ ..|...+....  .+.|+++++||+|+.....          +..+++.++++..+. +++++||++|
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR  149 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence            99999999998 66776665542  5789999999999976433          667778888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKVV  178 (197)
Q Consensus       165 ~~i~~~~~~i~~~~  178 (197)
                      .|++++|+++++.+
T Consensus       150 ~~i~~l~~~l~~~~  163 (164)
T cd04145         150 LNVDKAFHDLVRVI  163 (164)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.2e-33  Score=200.47  Aligned_cols=162  Identities=34%  Similarity=0.631  Sum_probs=140.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ++..+||+++|++|||||||+++|..+.+...+.++.. +.....+.+++..+.+++||+||++++..++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999988877777764 34456677889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|||++++++++.+ ..|...+....     +++|+++|+||+|+...           .+..+++.++++..+..+++
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-----------QVSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-----------ccCHHHHHHHHHHCCCCeEE
Confidence            999999999999998 77877665432     46899999999998632           26778899999999876899


Q ss_pred             EecccCCCCHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++||++|+|++++|.++++.
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.2e-35  Score=195.70  Aligned_cols=162  Identities=31%  Similarity=0.567  Sum_probs=145.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .++++++||++-||||+|++.|..+++..-..||. .+.+...+.+ ++..+.+++|||+||++|+++...++++.-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            57999999999999999999999999998888888 4666665554 678899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      +|||++|++||+.+ +.|+.....+.  |..++ .+||.|+|+...++          ++.++++.++...|. .|+++|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999999 88988776665  45554 68999999987665          999999999999998 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHc
Q 029177          161 SKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~  179 (197)
                      |++|.|+++.|+.+.+.+.
T Consensus       155 ak~g~NVeEAF~mlaqeIf  173 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIF  173 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHH
Confidence            9999999999999988764

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=3.5e-33  Score=198.89  Aligned_cols=171  Identities=51%  Similarity=0.937  Sum_probs=145.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      .||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||++|++.+...+...+.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888876666677788888999999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.+...|...+....++.|+++|+||+|+.+.....  ........+...++++++...+..+++++||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            9999999998667888887766789999999999986532110  11112234667888999999887789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|+++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.5e-34  Score=207.61  Aligned_cols=163  Identities=33%  Similarity=0.571  Sum_probs=141.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+||+++|++|||||||+++|.++.+...+.++.. +.+...+.+ ++..+.+++||++|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999998877777764 445555655 4667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|+..+....  ...|+++|+||+|+.+...          +..+++.++++.++. +++++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999999 77888776554  3578899999999976543          788889999999995 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +|+|++++|+++.+.+...
T Consensus       150 ~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         150 TGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999877644

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=192.38  Aligned_cols=164  Identities=30%  Similarity=0.585  Sum_probs=149.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...|||+++|..|+|||+|+++|..+-|++....|+ .+.+-+++.++++.+.+++|||+|+++|+++...+++.||+++
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            457899999999999999999999999998888887 5777889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++||++...+|+-+ ..|+..+..+. ..+--|+|+||.|+.+.++          ++...+++|.+.... .|.++||+
T Consensus        85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak  152 (213)
T KOG0095|consen   85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK  152 (213)
T ss_pred             EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence            99999999999999 89999999887 4566689999999988776          899999999998776 68899999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +.+|++.+|..+.-.+..
T Consensus       153 ea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  153 EADNVEKLFLDLACRLIS  170 (213)
T ss_pred             chhhHHHHHHHHHHHHHH
Confidence            999999999998866643

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.7e-33  Score=198.67  Aligned_cols=161  Identities=34%  Similarity=0.588  Sum_probs=141.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999988877777774 4446677788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.++..+ ..|+..+....+ ++|+++|+||+|+...+.          +..++...+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999999 789888877664 699999999999976443          677888888888776 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      |+|++++|+++...+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.7e-33  Score=199.63  Aligned_cols=162  Identities=30%  Similarity=0.506  Sum_probs=139.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      ||+++|++|||||||+++|.++.|...+.++.... ....+.+++..+.+++||+||+++|...+..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999998988544 45667788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.. ..|+..+....  .+.|+++|+||+|+.+...        .....+++..++++++. +++++||++|+
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999999 78888775543  3578999999999865321        11356677888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029177          166 NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~  180 (197)
                      |++++|+.+.+.+..
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998743

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.8e-33  Score=197.10  Aligned_cols=155  Identities=26%  Similarity=0.393  Sum_probs=130.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+.++..+.|...+.++ ...+...+.+++..+.+++||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            58999999999999999999999887766554 344456788899889999999999975     245678999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      +++++||+.+ ..|+..+....  +++|+++||||+|+...        ..+.+..+++.+++++.+..++++|||++|+
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISES--------NPRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhc--------CCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999999 67888887664  57899999999998531        1234788888999988764589999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|..+.+.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.7e-33  Score=206.74  Aligned_cols=162  Identities=30%  Similarity=0.561  Sum_probs=143.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||++|++++...+..+++.++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999988777777774 4456778888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+.          +..+++..++...+. +++++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~  158 (216)
T PLN03110         91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE  158 (216)
T ss_pred             EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78988888765 4799999999999976543          777888999988886 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|++++..+.
T Consensus       159 g~~v~~lf~~l~~~i~  174 (216)
T PLN03110        159 ATNVEKAFQTILLEIY  174 (216)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988763

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=7.4e-35  Score=194.75  Aligned_cols=165  Identities=31%  Similarity=0.617  Sum_probs=151.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...||++++|..-||||||+-|+..++|.....+|. ..+..+.+.++++...+.+|||+||++|+.+-+.+++..++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            357999999999999999999999999998888887 4566788889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++|++||+.. +.|...++... ..+.++||+||+|+.+.+.          ++.+++.+++..-|+ .|+++||+
T Consensus        91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk  158 (218)
T KOG0088|consen   91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK  158 (218)
T ss_pred             EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence            99999999999999 89999988877 5688899999999988776          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++.||.++|..+.+.++..
T Consensus       159 ~N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  159 DNVGISELFESLTAKMIEH  177 (218)
T ss_pred             cccCHHHHHHHHHHHHHHH
Confidence            9999999999998877543

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.3e-33  Score=197.92  Aligned_cols=163  Identities=29%  Similarity=0.587  Sum_probs=141.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+......+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999988777766653 4445566778888899999999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+...          +..+++..++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999999 78998887764 6899999999999975433          777888899998887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      ++|++++|.++.+.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.6e-33  Score=202.23  Aligned_cols=165  Identities=22%  Similarity=0.407  Sum_probs=134.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG   78 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~   78 (197)
                      +||+++|.+|||||||+++|.++.+...+.|++. +.+...+.+++..+.+++|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888874 444556677888899999999997655322        2234789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCC
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHY----APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGA  153 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (197)
                      +|++++|||+++++|++.+ ..|.+.+...    .+++|+++|+||+|+.+.+.          +..+++..++. .++.
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999998 7777766554    25799999999999976433          56666777765 4455


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                       +++++||++|.|++++|+.+++.++...+.
T Consensus       150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         150 -GYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             -cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence             899999999999999999999988766554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.4e-33  Score=197.14  Aligned_cols=158  Identities=30%  Similarity=0.579  Sum_probs=138.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988777777664 344556777888899999999999999988899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |+++++++..+ ..|+..+.... ++.|+++++||.|+.....          +..+++..+++..+. +++++||++++
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 78888776554 6899999999999976443          778888999999985 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|+++++.
T Consensus       149 ~i~~~~~~~~~~  160 (161)
T cd04113         149 NVEEAFLKCARS  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=205.16  Aligned_cols=168  Identities=30%  Similarity=0.576  Sum_probs=145.5

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      |.....+||+++|++|+|||||+++|....+...+.++.. +.....+.+++..+.+++||++|++.+...+..+++.+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            4455679999999999999999999999988777777764 444556778888889999999999999988888999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      ++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+.+.+.          +..+++.++++.++. +++++
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~  148 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence            99999999999999998 67877766554 5799999999999976543          788889999999887 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||+++.|++++|.++++.+.+.
T Consensus       149 Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        149 SAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999888654

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=4.1e-33  Score=197.44  Aligned_cols=161  Identities=32%  Similarity=0.584  Sum_probs=142.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|.+|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||+++|..++..+++.++++++|||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~   81 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence            79999999999999999999999998888888876667777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++++++.. ..|...+....  .+.|+++++||.|+...+.          +..+++..+++.++..+++++||++++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~~  150 (168)
T cd04177          82 VTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRT  150 (168)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence            9999999999 67777776533  5799999999999976443          677788888888885689999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|.++...++
T Consensus       151 ~i~~~f~~i~~~~~  164 (168)
T cd04177         151 NVDEVFIDLVRQII  164 (168)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999997653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=5.3e-33  Score=197.23  Aligned_cols=160  Identities=29%  Similarity=0.538  Sum_probs=139.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcc-cccccCcCCCcEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFLL   84 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~   84 (197)
                      .+||+++|++|||||||++++..+.+...+.++.. +.....+.+++..+.+++||++|++.++ .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999988877777764 4445667788888999999999999886 578888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||+++++++..+ ..|+..+....  .++|+++|+||+|+.+...          +..+++.+++..++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  149 (170)
T cd04115          82 VYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSAK  149 (170)
T ss_pred             EEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEecc
Confidence            9999999999999 78988887654  5799999999999976544          778888899988875 89999999


Q ss_pred             C---CCCHHHHHHHHHHHH
Q 029177          163 T---QQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~---~~~i~~~~~~i~~~~  178 (197)
                      +   +++++++|.++++.+
T Consensus       150 ~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         150 DPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCcCCCCHHHHHHHHHHHh
Confidence            9   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.1e-33  Score=207.86  Aligned_cols=161  Identities=26%  Similarity=0.438  Sum_probs=138.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+...+.+|+.+.+...+.+++..+.+++|||+|++.|..++..++..+|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888888877777778889999999999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           88 LISKASYENISKKWIPELRHY----------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++++++|+.+ ..|.+.+...          ..++|+++|+||+|+...+.          +..+++.+++......+++
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999999 6777666542          24799999999999975433          6777777777654344899


Q ss_pred             EecccCCCCHHHHHHHHHHHHc
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++||++|.|++++|+++.+.+.
T Consensus       150 evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.5e-33  Score=201.55  Aligned_cols=155  Identities=25%  Similarity=0.472  Sum_probs=135.4

Q ss_pred             ECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh
Q 029177           13 VGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK   91 (197)
Q Consensus        13 vG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   91 (197)
                      +|++|||||||+++|..+.+...+.+|.. +.....+.+++..+.+.+||++|+++|..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999998888888874 45566677888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177           92 ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus        92 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  171 (197)
                      .|++.+ ..|+..+....+++|+++||||+|+....           +..+. ..+++..+. +++++||++|+|++++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999999 78999998877889999999999986421           33333 467777776 89999999999999999


Q ss_pred             HHHHHHHcCC
Q 029177          172 DAAIKVVLQP  181 (197)
Q Consensus       172 ~~i~~~~~~~  181 (197)
                      .++++.+...
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=1.3e-32  Score=195.15  Aligned_cols=169  Identities=65%  Similarity=1.106  Sum_probs=145.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999988888888777677777888888999999999999988888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC-CCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN-HPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      ++++.++......|+..+....++.|+++|+||+|+.+....... ......+..+++.+++..++..+++++||++|+|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            999999999877898888887778999999999999875531100 0112345678888999999977999999999999


Q ss_pred             HHHHHHHHHH
Q 029177          167 VKTVFDAAIK  176 (197)
Q Consensus       167 i~~~~~~i~~  176 (197)
                      ++++|+++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=4.4e-33  Score=196.67  Aligned_cols=159  Identities=30%  Similarity=0.543  Sum_probs=136.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d   87 (197)
                      ||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+++||+||++. +......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            68999999999999999999998888888887555666677888889999999999985 34456678899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           88 LISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ++++++++.+ ..|...+....   .+.|+++|+||+|+...+.          +..+++..+++..+. +++++||+++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999998 77877777653   4799999999999866443          777888899999986 8999999999


Q ss_pred             -CCHHHHHHHHHHHHc
Q 029177          165 -QNVKTVFDAAIKVVL  179 (197)
Q Consensus       165 -~~i~~~~~~i~~~~~  179 (197)
                       .|++++|..+++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence             599999999998653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.2e-32  Score=195.17  Aligned_cols=164  Identities=21%  Similarity=0.285  Sum_probs=137.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .+.+||+++|++|||||||+++|.++.+. ..+.+|....+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999998 88888875544 35577788888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++|||++++.+++.+ ..|...+... .++|+++|+||+|+.+...          ....+..++++.++...++++||+
T Consensus        82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~  149 (169)
T cd01892          82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK  149 (169)
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence            999999999999988 6777665432 4799999999999965432          333455677888887557999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+.+.+.+++
T Consensus       150 ~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         150 LGDSSNELFTKLATAAQY  167 (169)
T ss_pred             cCccHHHHHHHHHHHhhC
Confidence            999999999999998865

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.6e-32  Score=193.39  Aligned_cols=161  Identities=37%  Similarity=0.684  Sum_probs=140.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|+|||||+++|.+..+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999888777667664 334556777888889999999999999988899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++.+++.+ ..|+..+..+. +++|+++|+||+|+.....          +..+.+..+++.++. +++++||++++
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999998 67988887766 6899999999999876443          677888889988886 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029177          166 NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~  180 (197)
                      |++++|+++.+.+..
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987743

Rab GTPases are implicated in vesicle trafficking.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.5e-32  Score=193.70  Aligned_cols=159  Identities=32%  Similarity=0.549  Sum_probs=135.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +||+++|++|||||||++++..+  .+..++.++.. +.+...+.++ +..+.+++||+||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67788888874 4444445554 56799999999999998888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||+++++++..+ ..|+..+....++.|+++|+||+|+.+...          +...++..+....+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999988 789888887767799999999999976543          666667777777776 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      +.|++++|+.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999999865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.3e-32  Score=193.23  Aligned_cols=163  Identities=33%  Similarity=0.592  Sum_probs=139.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988777777764 444566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           87 SLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      |++++.+++.. ..|...+....     .++|+++|+||+|+..+..          ...++...+++..+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999888 67766554433     2799999999999975332          56778888888888669999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|.|++++|+++.+.++..
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         150 KEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=2.9e-32  Score=195.08  Aligned_cols=178  Identities=29%  Similarity=0.523  Sum_probs=146.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      .||+++|++|+|||||+++|..+.+...+.+++...+...+..++..+.+++||+||++++...+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999887778887765556667778888899999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           88 LISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      +++..+++.+...|...+.... .+.|+++++||+|+...+.          +..++...+++.++. +++++||++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  150 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENEN  150 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            9999999999444444444322 5789999999999975432          556667778887785 899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177          167 VKTVFDAAIKVVLQPPKPKKRKRKARPCIFL  197 (197)
Q Consensus       167 i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~  197 (197)
                      +.++|.++.+.+......... .-++.|.+|
T Consensus       151 v~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~  180 (180)
T cd04137         151 VEEAFELLIEEIEKVENPLDP-GQKKKCSIM  180 (180)
T ss_pred             HHHHHHHHHHHHHHhcCCCCC-CCCCCceeC
Confidence            999999999998877665543 356678765

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=4.5e-32  Score=190.98  Aligned_cols=159  Identities=35%  Similarity=0.648  Sum_probs=139.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||++++.++.+...+.++... .....+.+++..+.+.+||+||++++...+..+++.+|++++|+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999987767777643 44667788888899999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |+++++++... ..|+..+.... ++.|+++++||+|+.....          ...++...++...+. +++++||++|.
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd01860          82 DITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTGE  149 (163)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999999 78888877665 6799999999999875433          677788888888885 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|+++.+.+
T Consensus       150 ~v~~l~~~l~~~l  162 (163)
T cd01860         150 NVNELFTEIAKKL  162 (163)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.7e-32  Score=191.02  Aligned_cols=158  Identities=37%  Similarity=0.620  Sum_probs=137.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988777777664 555666777888889999999999999988899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++...+++..+. +++++||++++
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999998 77888776554 3699999999999965433          677888888888885 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKV  177 (197)
Q Consensus       166 ~i~~~~~~i~~~  177 (197)
                      |++++|+++.+.
T Consensus       149 ~v~~l~~~i~~~  160 (161)
T cd01861         149 NVKELFRKIASA  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=196.31  Aligned_cols=163  Identities=35%  Similarity=0.612  Sum_probs=150.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|.+|||||+|+.+|..+.|.+.|.||+.+.|...+.+++..+.+.++||+|++.|..+...++.++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |+++++.||+.+ ..+.+.+.+..  ..+|+++||||+|+...+.          ++.+++..++..+++ +|+++||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 56666663322  5789999999999987654          999999999999999 699999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      +.+++++|..+++.+-.
T Consensus       150 ~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998766

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=6.5e-32  Score=198.91  Aligned_cols=160  Identities=24%  Similarity=0.414  Sum_probs=134.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC-CCcEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFLL   84 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~   84 (197)
                      +||+++|++|||||||+++|..+.+. ..+.++.. +.+...+.+++..+.+.+||+||++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 56666654 56677788888889999999999982  23344566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.+ ..|+..+....  .++|+++|+||+|+...+.          +..+++.+++...+. +++++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999998 77888777654  5799999999999976543          777778888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++.|++++|+++++.+...
T Consensus       147 ~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         147 LQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=196.58  Aligned_cols=166  Identities=31%  Similarity=0.587  Sum_probs=139.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+. .+.++.. +.....+.+++..+.+++||+||+++|..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            34689999999999999999999998774 5556654 333456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++++++.+...|...+....  .+.|+++|+||+|+.....          +..++...++...+. +++++||
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SA  159 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSA  159 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            99999999999999666777666443  4689999999999976443          677788888888886 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++++|++++|+++.+.+...+
T Consensus       160 k~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        160 KTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999998875443

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.2e-31  Score=188.31  Aligned_cols=159  Identities=35%  Similarity=0.642  Sum_probs=136.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|+|||||+++|+.+.+...+.+++. ......+...+..+.+.+||+||++.+...++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999988766666653 444556667777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.. ..|+..+.... .++|+++++||+|+.....          +..++..++++..+. +++++|+++++
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 77888777665 3789999999999975443          666777888888886 79999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++++++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=2.5e-31  Score=186.89  Aligned_cols=157  Identities=31%  Similarity=0.607  Sum_probs=135.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||+++|.+..+...+.++... .....+.+++..+.+++||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887666676643 33445667788899999999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++++++.+ ..|++.+..+.  ++.|+++|+||+|+....           ...++..+++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999998 66888887764  589999999999997432           566788889888876 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKV  177 (197)
Q Consensus       165 ~~i~~~~~~i~~~  177 (197)
                      +|++++++++.+.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.3e-31  Score=187.39  Aligned_cols=160  Identities=34%  Similarity=0.610  Sum_probs=138.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||+..+...+..+++.+++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999988888888776667777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           88 LISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ++++.++... ..|...+....  .++|+++|+||+|+.+...          ....+...+++.++. +++++||++++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999998 55555555442  5799999999999976322          566677788888886 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|+++...+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01893 Miro1 Miro1 subfamily

Probab=100.00  E-value=2.9e-31  Score=187.59  Aligned_cols=164  Identities=29%  Similarity=0.438  Sum_probs=129.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|..+.+...+.++ ...+.....+.+..+.+++||+||++.+...+...+..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999999999887664433 33334444566777899999999998887777777899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCCCC
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQQN  166 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  166 (197)
                      ++++.+++.+...|...+....++.|+++|+||+|+.+....        ....++...++..++. .+++++||+++.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            999999999856788888776678999999999999764320        0112333344444432 3799999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 029177          167 VKTVFDAAIKVVLQ  180 (197)
Q Consensus       167 i~~~~~~i~~~~~~  180 (197)
                      ++++|+.+.+.++.
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.2e-31  Score=192.44  Aligned_cols=172  Identities=20%  Similarity=0.322  Sum_probs=130.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+||+++|++|||||||++++..+.+... .++.. ......+.. ++..+.+.+||+||++.+...+..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999999887644 45542 333333333 446689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH--c---CCcEE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL--I---GAAVY  156 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~  156 (197)
                      +|||++++.+++.. ..|+..+....  .+.|+++|+||+|+.+.            ...++...+...  .   ...++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999998887 56665554432  47999999999998642            333444443321  1   12368


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCCCCcccccCCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKA  191 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~  191 (197)
                      +++||++++|++++|+++.+.+...++..+.++|+
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~~~  182 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQKKK  182 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            89999999999999999999997766666555554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=9.8e-31  Score=185.22  Aligned_cols=162  Identities=30%  Similarity=0.578  Sum_probs=137.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999998887766666653 455556778888889999999999999988888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.+.          +..+....+.+.... +++++||+
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~~Sa~  152 (169)
T cd04114          85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLETSAK  152 (169)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEeeCC
Confidence            99999999999988 67888777655 4799999999999976443          666666777777774 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      +|.|++++|+++.+.+
T Consensus       153 ~~~gv~~l~~~i~~~~  168 (169)
T cd04114         153 ESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=189.36  Aligned_cols=164  Identities=36%  Similarity=0.597  Sum_probs=145.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC---------CeEEEEEEEecCCCcCcccccccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~   75 (197)
                      ..+|.+.+|++||||||++.++..++|...-..|.. +...+.+..+         +..+.+++|||+||++|+++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            467899999999999999999999999888777774 4445555542         356899999999999999999999


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ++.|=+++++||+++..||.+. ..|+.++..+.  ++..+|+++||+|+.+.+.          ++.+++.+++++++.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl  156 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL  156 (219)
T ss_pred             HHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC
Confidence            9999999999999999999999 88999988765  7888999999999988776          999999999999998


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                       |||++||-+|.|+++..+.+...+++.
T Consensus       157 -PYfETSA~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  157 -PYFETSACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             -CeeeeccccCcCHHHHHHHHHHHHHHH
Confidence             999999999999999998888877644

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=2.8e-31  Score=187.93  Aligned_cols=156  Identities=16%  Similarity=0.209  Sum_probs=120.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|..+.+. .+.+|....+. .+..  ..+.+++||+||++.++..+..+++++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            34689999999999999999999987764 45565543322 2333  34889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH---c-CCcEEEEe
Q 029177           85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL---I-GAAVYIEC  159 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  159 (197)
                      |||++++.+++.....|.+.+... .++.|+++|+||+|+.+.            +..+++.++...   . ...+++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  150 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS  150 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence            999999999998855455555443 367999999999998642            445555555421   1 12368999


Q ss_pred             cccCCCCHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~  176 (197)
                      ||++|+|++++|++|.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00876 Ras Ras family

Probab=99.98  E-value=7.5e-31  Score=183.94  Aligned_cols=157  Identities=37%  Similarity=0.667  Sum_probs=136.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||++++++..+...+.+++.+.+......++..+.+++||+||+..+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888887766666777787788999999999999888888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      ++++++... ..|...+....  .+.|+++++||+|+.....          ...+++.+++..++. +++++||++++|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999998 55655555544  4899999999999976443          677888899888885 899999999999


Q ss_pred             HHHHHHHHHHH
Q 029177          167 VKTVFDAAIKV  177 (197)
Q Consensus       167 i~~~~~~i~~~  177 (197)
                      ++++|++|.+.
T Consensus       149 i~~l~~~l~~~  159 (160)
T cd00876         149 IDEVFKLLVRE  159 (160)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=8.6e-31  Score=187.50  Aligned_cols=157  Identities=15%  Similarity=0.230  Sum_probs=120.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||++++..+.+. .+.||....+. .+..+  .+.+++||+||++.++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            34589999999999999999999987775 45566543332 23333  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-------cEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-------AVY  156 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  156 (197)
                      |||+++++++......+...+... .+++|++|++||+|+.+.            ...++   +....+.       ..+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~---~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAE---ITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHH---HHHHhCccccCCCceEE
Confidence            999999999998844444444332 268999999999999653            22233   3333322       245


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++|+|++++|++|.+.+.+
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhh
Confidence            689999999999999999988754

>cd00154 Rab Rab family

Probab=99.97  E-value=1.6e-30  Score=181.67  Aligned_cols=156  Identities=38%  Similarity=0.734  Sum_probs=135.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|||||||++++.+..+...+.++.. ......+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988877666664 444566677777899999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++++++.+ ..|+..+.... ++.|+++++||+|+.....          ...++...++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999998 67888887776 6799999999999973332          677888888888776 89999999999


Q ss_pred             CHHHHHHHHH
Q 029177          166 NVKTVFDAAI  175 (197)
Q Consensus       166 ~i~~~~~~i~  175 (197)
                      |++++++++.
T Consensus       149 ~i~~~~~~i~  158 (159)
T cd00154         149 NVEELFQSLA  158 (159)
T ss_pred             CHHHHHHHHh
Confidence            9999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2.5e-30  Score=187.80  Aligned_cols=160  Identities=26%  Similarity=0.430  Sum_probs=132.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||+++|.++.+...+.++........+.+.+..+.+++||+||+..|..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999887777777555556677888888999999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCCcEEEEecccCCC
Q 029177           89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGAAVYIECSSKTQQ  165 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~  165 (197)
                      +++.+++.+ ..|...+....  .++|+++|+||+|+.....         .+..++..+... ..+. +++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence            999999998 77777666554  4799999999999865211         244444444443 3343 79999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|+++++.+.
T Consensus       150 gv~~l~~~l~~~~~  163 (198)
T cd04147         150 NVLEVFKELLRQAN  163 (198)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-31  Score=174.04  Aligned_cols=164  Identities=30%  Similarity=0.574  Sum_probs=147.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...||-+++|+-|+|||+|+.+|...+|..+.+.++.. +-...+.+.+..+.+++||++|+++|+.....+++++.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            35789999999999999999999999998888888754 44566788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++.++++..+ ..|+...+... |+..+++++||.|+...+.          ++.+++.+|+.+.|. .++++||+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak  156 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK  156 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence            99999999999999 78887776654 7888999999999987766          999999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+++++.|.+..+.++.
T Consensus       157 tg~nvedafle~akkiyq  174 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQ  174 (215)
T ss_pred             ccCcHHHHHHHHHHHHHH
Confidence            999999999887776643

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.3e-30  Score=183.63  Aligned_cols=159  Identities=16%  Similarity=0.189  Sum_probs=118.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|..+.+. .+.||....+. .+...  .+.+++||+||++.+...+..+++++|++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            34689999999999999999999887774 45666543322 23333  4789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEe
Q 029177           85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIEC  159 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  159 (197)
                      |||++++++++.....|...+... .++.|++||+||+|+.+.            ...++..+....    .....++++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  154 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA------------MKAAEITEKLGLHSIRDRNWYIQPT  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC------------CCHHHHHHHhCccccCCCcEEEEEe
Confidence            999999999998844444444433 257999999999999653            122222221111    112246789


Q ss_pred             cccCCCCHHHHHHHHHHHHc
Q 029177          160 SSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ||++|+|++++|++|.+.+.
T Consensus       155 Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      155 CATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3.6e-30  Score=182.47  Aligned_cols=156  Identities=17%  Similarity=0.269  Sum_probs=122.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||+++|.++.+. .+.+|....+. .+...  .+.+++||+||+..+...+..+++++|++++|||+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            6899999999999999999998765 35666533332 23333  47889999999999998999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-----CcEEEEecc
Q 029177           89 ISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-----AAVYIECSS  161 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa  161 (197)
                      +++++++.. ..|+..+...  ..+.|+++|+||+|+.+.            +..+++.+++...+     ...++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999998 5555554432  256899999999999642            55566666654322     236789999


Q ss_pred             cCCCCHHHHHHHHHHHHcCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|.|++++|+++.+.+...
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=3.9e-31  Score=186.51  Aligned_cols=152  Identities=18%  Similarity=0.246  Sum_probs=122.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   89 (197)
                      |+++|++|||||||+++|.++.+...+.||.....   ..++...+.+.+||+||+++++..+..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            79999999999999999999888777777764322   234445588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH----HHHHHHHHHcCCcEEEEecccC--
Q 029177           90 SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT----AQGEELKKLIGAAVYIECSSKT--  163 (197)
Q Consensus        90 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~--  163 (197)
                      ++.++... ..|+..+....+++|+++|+||+|+.....          +..    .++..++++.+. +++++||++  
T Consensus        79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~  146 (164)
T cd04162          79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG  146 (164)
T ss_pred             CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence            99999988 566666654447899999999999865431          211    234556666665 789988888  


Q ss_pred             ----CCCHHHHHHHHHH
Q 029177          164 ----QQNVKTVFDAAIK  176 (197)
Q Consensus       164 ----~~~i~~~~~~i~~  176 (197)
                          ++|++++|+.++.
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.7e-32  Score=178.59  Aligned_cols=159  Identities=34%  Similarity=0.620  Sum_probs=140.6

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCCCC-CCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177           11 VTVGDGAVGKTCMLISYTSNTFPTD-YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus        11 ~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      +++|++++|||+|+-||..+.|... -.+|.. +...+-+..++..+.+|+|||+||++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            4789999999999999998887543 334443 44456677899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177           89 ISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                      .++.||++. +.|+..+.++. ..+.+.+++||+|+...+.          +..+++..++..|+. |+.++||++|.|+
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999999 89999999887 5788899999999987665          888999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 029177          168 KTVFDAAIKVVLQP  181 (197)
Q Consensus       168 ~~~~~~i~~~~~~~  181 (197)
                      +..|..|...+.+.
T Consensus       149 d~af~~ia~~l~k~  162 (192)
T KOG0083|consen  149 DLAFLAIAEELKKL  162 (192)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999877544

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=3.9e-30  Score=180.59  Aligned_cols=153  Identities=16%  Similarity=0.218  Sum_probs=115.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|.+|||||||++++..+.+. .+.||....+ ..+...  .+.+++||+||++.+...+..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999888775 4666654332 223333  4889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHH---HcCCcEEEEeccc
Q 029177           88 LISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKK---LIGAAVYIECSSK  162 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~Sa~  162 (197)
                      ++++.+++.....|...+... ..+.|+++++||+|+.+.            ...++ ...+..   ......++++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~Sak  144 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNWYIQATCAT  144 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCEEEEEeeCC
Confidence            999999999844454444432 257899999999999652            22222 222211   0112357799999


Q ss_pred             CCCCHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIK  176 (197)
Q Consensus       163 ~~~~i~~~~~~i~~  176 (197)
                      +|+|++++|++|.+
T Consensus       145 ~g~gv~~~~~~l~~  158 (159)
T cd04150         145 SGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.8e-29  Score=185.48  Aligned_cols=167  Identities=26%  Similarity=0.481  Sum_probs=139.6

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      +.....+||+++|++|||||||++++..+.+...+.++.. +.....+..++..+.+++||++|++++...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            4556679999999999999999999999888888888874 333445556788899999999999999888888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++++|||++++.++..+ ..|...+....+++|+++++||+|+.+..           ...+ ...+++..+. .++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~S  149 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDIS  149 (215)
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEe
Confidence            99999999999999999 78888887766789999999999986422           2223 2456667775 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCCC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      |++|.|+++.|.++++.+...+
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcc
Confidence            9999999999999999887543

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.6e-30  Score=183.94  Aligned_cols=159  Identities=19%  Similarity=0.247  Sum_probs=119.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||++++..+.+.. +.+|....+. .+...  .+.+++||+||++.++..+..+++++|++|+|
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            35899999999999999999998887754 5566543332 33343  47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S  160 (197)
                      ||++++++++.....+...+... ..+.|+++|+||+|+.+.            ...++.......    .....++++|
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~S  159 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGCC  159 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEeee
Confidence            99999999999854454444432 257899999999998652            222222111111    0112567999


Q ss_pred             ccCCCCHHHHHHHHHHHHcC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~  180 (197)
                      |++|+|++++|+++.+.+.+
T Consensus       160 a~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        160 ATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999987654

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=3.9e-29  Score=177.84  Aligned_cols=155  Identities=18%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.+..+ ..+.++.. .....+.+++  +.+.+||+||++.++..+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4568999999999999999999998754 34445543 2233444554  788999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIE  158 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (197)
                      |||++++.++... ..|+..+...  ..+.|+++|+||+|+.+.            ...++..++...    ....++++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP  154 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence            9999999999887 4555544322  268999999999999653            233444444432    12348999


Q ss_pred             ecccCCCCHHHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~  176 (197)
                      +||++|+|++++|+++++
T Consensus       155 ~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         155 CSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             ccCCCCcCHHHHHHHHhc
Confidence            999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1e-28  Score=175.81  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=117.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|+|||||++++..+.+.. +.++....+ ..+..++  +.+.+||+||++.+...+..+++.+|++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            456899999999999999999999887754 455554333 2344444  788999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHH----HHcCCcEEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELK----KLIGAAVYIE  158 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~  158 (197)
                      |+|+++++++......+...+... ..+.|+++++||+|+.+.            ...++. ..+.    +..+ .++++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~  155 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence            999999999888744444444332 257999999999998652            222222 2221    1223 37899


Q ss_pred             ecccCCCCHHHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~  176 (197)
                      +||++|+|++++|++|.+
T Consensus       156 ~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         156 CCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cccCCCCCHHHHHHHHhc
Confidence            999999999999999865

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.9e-28  Score=177.39  Aligned_cols=145  Identities=21%  Similarity=0.299  Sum_probs=118.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEEC-----CeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      +||+++|++|||||||+++|..+.+...+.+|.... ....+.++     +..+.+++||++|+++|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888887533 33444443     567899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh--------------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHY--------------------APTVPIVLVGTKQDLREDKQYLINHPGATPITT  141 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  141 (197)
                      +++|||+++++|++.+ ..|+..+...                    .+++|+++||||+|+.+.+.          +..
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~  149 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG  149 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence            9999999999999999 7898887653                    14689999999999976432          332


Q ss_pred             ----HHHHHHHHHcCCcEEEEecccCC
Q 029177          142 ----AQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus       142 ----~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                          .....++++.++ +.++.++.++
T Consensus       150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~  175 (202)
T cd04102         150 NLVLTARGFVAEQGNA-EEINLNCTNG  175 (202)
T ss_pred             HHHhhHhhhHHHhcCC-ceEEEecCCc
Confidence                235567888998 7888787753

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=4.2e-29  Score=176.68  Aligned_cols=157  Identities=18%  Similarity=0.224  Sum_probs=117.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      +|+++|++|||||||+++|.++ +...+.+|.... ...+..++  +.+++||+||++.++..+..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 666667776433 23444444  7889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCC-
Q 029177           89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQ-  164 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~-  164 (197)
                      +++.++..+ ..|+..+....  .+.|+++|+||+|+.+.....      ..........++.+.+. .+++++||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999988 66666665432  579999999999997643100      00111111233333332 36778999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 029177          165 -----QNVKTVFDAAIK  176 (197)
Q Consensus       165 -----~~i~~~~~~i~~  176 (197)
                           .|+++.|+||..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.6e-28  Score=172.64  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=113.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +|+++|++|||||||+++|.+..+ ...+.++..... ..+..  ..+.+++||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV-ESFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce-EEEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            589999999999999999998753 445566653221 12222  34788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HH-HcCCcEEEEe
Q 029177           88 LISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KK-LIGAAVYIEC  159 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~  159 (197)
                      ++++.++... ..|+..+....    .++|+++|+||+|+.+..            ..++..+.   .. .....+++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~  144 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS  144 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence            9999998887 55655554321    479999999999996531            12222221   11 1112358999


Q ss_pred             cccCCCCHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~  176 (197)
                      ||++|+|++++|++|.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=3.9e-28  Score=175.14  Aligned_cols=157  Identities=18%  Similarity=0.262  Sum_probs=120.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+..||+++|++|||||||++++.++.+. .+.++... ....+.+++  ..+.+||+||+..+...+..+++.+|+++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            345789999999999999999999987763 45555432 233455565  67889999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc----------
Q 029177           84 LAFSLISKASYENISKKWIPELRH-YA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI----------  151 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  151 (197)
                      +|+|+++.+++... ..|+..+.. .. .+.|+++++||+|+...            +..++..++....          
T Consensus        92 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~  158 (190)
T cd00879          92 FLVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSL  158 (190)
T ss_pred             EEEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccc
Confidence            99999999998877 444444433 22 57999999999998642            4555555555421          


Q ss_pred             -----CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          152 -----GAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       152 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                           ...+++++||++|+|++++|+++.+.
T Consensus       159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                 22368999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.4e-27  Score=169.91  Aligned_cols=160  Identities=21%  Similarity=0.332  Sum_probs=124.0

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ...+.+||+++|++||||||+++++..+.+. ...||.... ...+..++  +.+.+||.+|+..++..|..+++++|++
T Consensus        10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~-~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   10 SKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN-IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE-EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             ccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc-cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence            4477899999999999999999999876543 234443222 33455666  7788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH--H---cCCcEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK--L---IGAAVY  156 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~  156 (197)
                      |||+|.++++.+......+...+.... .+.|++|++||+|+.+.            ...++......  .   ...+.+
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v  153 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSV  153 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEE
Confidence            999999999999888555555555433 68999999999998763            34444443322  1   123468


Q ss_pred             EEecccCCCCHHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +.+||.+|+|+.+.++||.+.+
T Consensus       154 ~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  154 FSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHhcC
Confidence            8999999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=8.2e-28  Score=168.56  Aligned_cols=151  Identities=16%  Similarity=0.206  Sum_probs=111.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++++|||||++++..+.+. .+.++....+ ..+...  .+.+++||+||++.+...+..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCe-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            6899999999999999999887764 3445543222 223333  47889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHH----HHcCCcEEEEeccc
Q 029177           89 ISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELK----KLIGAAVYIECSSK  162 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~  162 (197)
                      +++.++......|...+... ..+.|+++|+||+|+.+..            ...+.. .+.    ...+ .+++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence            99988877644454444432 2579999999999996531            112221 111    1112 369999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIK  176 (197)
Q Consensus       163 ~~~~i~~~~~~i~~  176 (197)
                      +|.|++++|+++.+
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=181.12  Aligned_cols=147  Identities=18%  Similarity=0.310  Sum_probs=119.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEEC-------------CeEEEEEEEecCCCcCccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-------------GSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~   70 (197)
                      ...+||+++|+.|||||||+++|..+.+...+.+|.... ....+.++             +..+.++|||++|++.|+.
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            457999999999999999999999999988888887543 34555553             2568899999999999999


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCCcccchhhhcCCCCCC
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-------------PTVPIVLVGTKQDLREDKQYLINHPGAT  137 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~  137 (197)
                      ++..+++++|++|+|||++++.+++.+ ..|+..+....             .++|++|||||+|+......    ....
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~s  173 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGSS  173 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----cccc
Confidence            999999999999999999999999999 88998887652             25899999999999653210    0000


Q ss_pred             CccHHHHHHHHHHcCCcEE
Q 029177          138 PITTAQGEELKKLIGAAVY  156 (197)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+..+++++|+.+.+..+.
T Consensus       174 ~~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        174 GNLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             cccHHHHHHHHHHcCCCcc
Confidence            1367899999999886543

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=1.1e-27  Score=169.24  Aligned_cols=152  Identities=20%  Similarity=0.309  Sum_probs=112.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +|+++|++|+|||||+++|.....      ...+.++....+ ..+.+++  ..+++||+||++.+...+..+++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999976422      122233332222 2344554  7888999999999998888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc------CCc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI------GAA  154 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  154 (197)
                      ++|+|+++++++... ..|+..+.+..  .++|+++++||+|+...            ...++...+....      ...
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence            999999999988887 45554444332  57999999999998653            3333334433221      224


Q ss_pred             EEEEecccCCCCHHHHHHHHHH
Q 029177          155 VYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +++++||++|+|+++++++|..
T Consensus       145 ~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEEeeCCCCcCHHHHHHHHhc
Confidence            8999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.3e-27  Score=167.80  Aligned_cols=151  Identities=21%  Similarity=0.297  Sum_probs=112.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      +|+++|++|||||||+++|.++.+.. +.++....+ ..+... ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            58999999999999999999988753 345543222 223333 347899999999999888888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH------HHHHcCCcEEEEec
Q 029177           89 ISKASYENISKKWIPEL-RHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE------LKKLIGAAVYIECS  160 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~S  160 (197)
                      +++.++... ..|+..+ .... .+.|+++|+||+|+...            ...++...      ++...+ .+++++|
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~S  143 (160)
T cd04156          78 SDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCS  143 (160)
T ss_pred             CcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEecc
Confidence            999998888 4444443 3222 58999999999999642            12222221      122222 3789999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 029177          161 SKTQQNVKTVFDAAIK  176 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~  176 (197)
                      |++|+|++++|++|.+
T Consensus       144 a~~~~gv~~~~~~i~~  159 (160)
T cd04156         144 AVTGEGLAEAFRKLAS  159 (160)
T ss_pred             cccCCChHHHHHHHhc
Confidence            9999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=1.8e-27  Score=170.80  Aligned_cols=156  Identities=16%  Similarity=0.203  Sum_probs=117.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.++|+++|.+|||||||++++.++.+. .+.++.... ...+...+  +.+.+||+||+..++..+..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            56799999999999999999999987664 333443221 22334444  778899999999998899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----------Hc
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----------LI  151 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  151 (197)
                      |+|+++++++... ..++..+...  ..+.|+++|+||+|+...            ++.++......           ..
T Consensus        91 vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~  157 (184)
T smart00178       91 LVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGV  157 (184)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCC
Confidence            9999999998887 4444443322  257999999999998642            33333332221           11


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +...++++||++++|++++++|+.+.
T Consensus       158 ~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      158 RPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ceeEEEEeecccCCChHHHHHHHHhh
Confidence            34468999999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=3.6e-27  Score=165.21  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=114.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||++++.++.+ ..+.++.... ...+.+.+  +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN-VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc-eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999874 3444444322 22233443  7889999999999998999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEeccc
Q 029177           89 ISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECSSK  162 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~  162 (197)
                      ++++++... ..|+..+...  ..+.|+++++||+|+....            ..++..+....    ....+++++||+
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  143 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAV  143 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence            999999988 4444444332  2589999999999997532            22333333221    223489999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIK  176 (197)
Q Consensus       163 ~~~~i~~~~~~i~~  176 (197)
                      +|.|++++|++|..
T Consensus       144 ~~~gv~~~~~~l~~  157 (158)
T cd00878         144 TGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCHHHHHHHHhh
Confidence            99999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=3.2e-26  Score=162.82  Aligned_cols=143  Identities=29%  Similarity=0.504  Sum_probs=123.1

Q ss_pred             CCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 029177           30 NTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY  108 (197)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  108 (197)
                      +.|.+.+.+|.+ +.+...+.+++..+.+.||||||++.+...+..+++++|++++|||++++.+|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            457778888885 55566788899999999999999999999999999999999999999999999999 7888877654


Q ss_pred             C-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          109 A-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       109 ~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      . ++.|+++|+||+|+...+.          +..+++..++..++. .++++||++|+|++++|+++.+.+...+..
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            4 5789999999999965433          778888899998887 799999999999999999999988664443

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=3.4e-26  Score=161.80  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=106.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc---------cCcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG   78 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~~   78 (197)
                      +|+++|++|||||||+++|.+..+... +..++..........  ..+.+++|||||+........         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            689999999999999999999876432 222222222222222  347889999999853211100         01123


Q ss_pred             CcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           79 ADVFLLAFSLISKASY--ENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|++++|+|++++.++  +.. ..|+..+.....+.|+++|+||+|+.....          +.  ...++....+ .++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~-~~~  145 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEG-EEV  145 (168)
T ss_pred             cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhcc-Cce
Confidence            6899999999988653  444 567777766556899999999999965432          22  1344444444 489


Q ss_pred             EEecccCCCCHHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +++||++|+|++++|+++.+.+
T Consensus       146 ~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         146 LKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EEEEecccCCHHHHHHHHHHHh
Confidence            9999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=1.8e-26  Score=164.80  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=112.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCce-------eeeeeEE--EEE---CCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV-------FDNFSAN--VVV---DGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~~~-------~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~~   69 (197)
                      +|+++|++++|||||+++|.+..       +...+.++.       .+.....  +.+   ++..+.+++|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998731       111222211       0111111  222   5567889999999999999


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ..+..+++.+|++++|||+++..+.... ..|.....   .++|+++|+||+|+.+..            ..+...++++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            8888899999999999999998776665 44433322   368999999999986421            1223345566


Q ss_pred             HcCCc--EEEEecccCCCCHHHHHHHHHHHHc
Q 029177          150 LIGAA--VYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       150 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .++..  +++++||++|+|++++|+++.+.+.
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            65542  4899999999999999999998763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=5.4e-26  Score=158.74  Aligned_cols=151  Identities=24%  Similarity=0.326  Sum_probs=114.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   89 (197)
                      |+++|++|||||||++++.+..+...+.++....+. .+...+  +.+.+||+||++.+...+..+++.+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            789999999999999999999988888777643332 233343  78999999999999988999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhh-h-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----HcCCcEEEEecccC
Q 029177           90 SKASYENISKKWIPELRH-Y-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LIGAAVYIECSSKT  163 (197)
Q Consensus        90 ~~~s~~~~~~~~~~~~~~-~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~  163 (197)
                      ++.++... ..|+..+.. . ..+.|+++|+||+|+.+...            ..+......    .....+++++|+++
T Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~  145 (159)
T cd04159          79 DRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREVSCYSISCKE  145 (159)
T ss_pred             CHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCceEEEEEEecc
Confidence            99988877 344444332 2 25789999999999865321            111111110    11224789999999


Q ss_pred             CCCHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIK  176 (197)
Q Consensus       164 ~~~i~~~~~~i~~  176 (197)
                      +.|++++++++.+
T Consensus       146 ~~gi~~l~~~l~~  158 (159)
T cd04159         146 KTNIDIVLDWLIK  158 (159)
T ss_pred             CCChHHHHHHHhh
Confidence            9999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=7.1e-26  Score=152.47  Aligned_cols=165  Identities=18%  Similarity=0.242  Sum_probs=124.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +++.++|+++|..|+||||++++|.+.. ++...||.... -.++..++  +.+++||.+||..++..|+.|+...|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~-Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ-IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee-eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            4568999999999999999999998875 33444443222 33444555  88999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccH-HHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITT-AQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|+|.+|+..+++....+...+.... .+.|+++++||.|+...-.       .+.+.+ -+...+++...+ +.+.||+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~  160 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSA  160 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEec
Confidence            99999999988887555544444332 5789999999999984321       000111 123344455555 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+|+++.+.++|+...+..
T Consensus       161 ~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  161 VTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             cccccHHHHHHHHHHHHHH
Confidence            9999999999999988765

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=2e-28  Score=167.23  Aligned_cols=163  Identities=34%  Similarity=0.509  Sum_probs=149.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+|++++|..+|||||++++++.+-|...|..++ .+.....+.+.++.+.+.+||++|+++|..+...++++|.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            57999999999999999999999999999999888 45556667777777888899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||+-+|+.||+.. ..|...+......+|.++|-||+|+.++..          +..+++..+++.++. .++.+|+++.
T Consensus        99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked  166 (246)
T KOG4252|consen   99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED  166 (246)
T ss_pred             EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence            9999999999999 889999888888999999999999999886          889999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      .|+.++|..++..+.+
T Consensus       167 ~NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  167 FNVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999886643

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.2e-25  Score=159.74  Aligned_cols=153  Identities=22%  Similarity=0.315  Sum_probs=112.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.++|+++|++|||||||++++.+..+. .+.++.... ...+..++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            45799999999999999999999987653 233443211 22344555  678899999998888888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-------CcEE
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-------AAVY  156 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  156 (197)
                      |+|+++..++......+...+.... .++|+++++||+|+.+..            ..+   ++.+..+       .+++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~---~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAE---EIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHH---HHHHHcCCcccCCCeEEE
Confidence            9999999988887334434433322 479999999999986531            111   2222222       2257


Q ss_pred             EEecccCCCCHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +++||++|+|++++|+||.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            89999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=2.7e-25  Score=163.74  Aligned_cols=178  Identities=32%  Similarity=0.513  Sum_probs=137.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|.++.+...+.++....+ .......+..+.+.+|||+|+++++..+..++.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999988988875444 34444454578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcC--CCCCCCccHHHHHHHHHHc--CCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLIN--HPGATPITTAQGEELKKLI--GAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  160 (197)
                      ||.++..++......|...+.... .+.|+++++||+|+.........  ....+....+.........  ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            999997777777799999998887 47999999999999876431100  0000112222222222222  233489999


Q ss_pred             cc--CCCCHHHHHHHHHHHHcCCCCc
Q 029177          161 SK--TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       161 a~--~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      ++  ++.+++++|..+...+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99  9999999999999988655433

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=154.80  Aligned_cols=162  Identities=18%  Similarity=0.225  Sum_probs=126.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+..+|+++|..++||||++++|..+..... .||.+...+ .+.+.  .+.|++||.+||+.++..|.+++++.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            34678999999999999999999998876544 777654433 34444  489999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH---HHc-CCcEEEE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK---KLI-GAAVYIE  158 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~  158 (197)
                      ||+|.+|++.+.++.+.+...+.... .+.|+++++||.|+.+.            .+..+..+..   .-. ....+-.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq~  157 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQS  157 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEee
Confidence            99999999999999666666655544 68999999999999875            3332222221   111 2224557


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|.+|+|+.|.++|+.+.+.+.
T Consensus       158 ~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  158 TCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccccccHHHHHHHHHHHHhcc
Confidence            99999999999999999987543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=5.8e-25  Score=153.14  Aligned_cols=156  Identities=36%  Similarity=0.506  Sum_probs=122.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +||+++|++|+|||||++++....+...+.++.. ......+..++..+.+.+||+||+.++...+...++.++.++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            7999999999999999999999887666666654 333444667777788999999999999888888889999999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISK-ASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |.... .++......|...+..... +.|+++++||+|+....           .. ..........+..+++++||.++
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~~  149 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAETG  149 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCCC
Confidence            99888 6666664466666665554 88999999999996532           22 23333444445558999999999


Q ss_pred             CCHHHHHHHHH
Q 029177          165 QNVKTVFDAAI  175 (197)
Q Consensus       165 ~~i~~~~~~i~  175 (197)
                      .|+.++|+++.
T Consensus       150 ~gv~~~~~~l~  160 (161)
T TIGR00231       150 KNIDSAFKIVE  160 (161)
T ss_pred             CCHHHHHHHhh
Confidence            99999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.3e-25  Score=157.75  Aligned_cols=156  Identities=20%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc----ccccccC---cCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~~---~~~~~   80 (197)
                      +|+++|.+|||||||+++|.+..... .+..++.......+...+. ..+++|||||+...    +.....+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            58999999999999999999754321 2222222222222333332 47889999997422    1222222   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           81 VFLLAFSLISK-ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++++|+|++++ ++++.. ..|.+.+....   .+.|+++|+||+|+.+...           ..+....+.......++
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~  148 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGKPV  148 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCCCE
Confidence            99999999999 788887 77877776654   3689999999999966432           22334445555323479


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++||+++.|++++|+++.+.
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         149 FPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            999999999999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=3.8e-26  Score=157.36  Aligned_cols=135  Identities=25%  Similarity=0.262  Sum_probs=100.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-----CcccccccCcCCCcEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFL   83 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i   83 (197)
                      ||+++|++|||||||+++|.+..+  .+.++..      +....     .+||+||+.     .+..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--cccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            899999999999999999998764  2333321      11222     589999973     2333333 478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||++++.++...  .|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            99999999987653  454432     24999999999986421           4456677788777766899999999


Q ss_pred             CCCHHHHHHHHH
Q 029177          164 QQNVKTVFDAAI  175 (197)
Q Consensus       164 ~~~i~~~~~~i~  175 (197)
                      ++|++++|+++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=5.4e-25  Score=170.28  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=117.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----cc---cccCcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RL---RPLSYRGA   79 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~---~~~~~~~~   79 (197)
                      -.|++||.||||||||+++++.... ...|..|+.......+.+.+ ...+++||+||...-.    .+   +...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4699999999999999999997542 23455555444444444532 2467899999974311    12   22345679


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +++++|+|+++.++++.. ..|...+..+.   .+.|+++|+||+|+.+...          ...+....+....+. ++
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i  305 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV  305 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence            999999999998888888 78888887764   3789999999999975432          333344455555554 79


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++++|++++++++.+.+..
T Consensus       306 ~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        306 FLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988754

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.3e-24  Score=152.80  Aligned_cols=153  Identities=20%  Similarity=0.160  Sum_probs=102.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC---CCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .|+++|.+|||||||+++|.+.   .+..++.+++ .+.....+.+.+ ...+++|||||++++.......+.++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            6899999999999999999863   3333322222 222222344442 3578899999999887666667889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--CCcEEEEe
Q 029177           85 AFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--GAAVYIEC  159 (197)
Q Consensus        85 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  159 (197)
                      |+|+++   +++.+.+     ..+... ...|+++++||+|+.+...        .....++..+.....  ...+++++
T Consensus        81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  146 (164)
T cd04171          81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV  146 (164)
T ss_pred             EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence            999987   3333332     122211 2249999999999965321        001223333444332  23489999


Q ss_pred             cccCCCCHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~  176 (197)
                      ||++++|++++++.+..
T Consensus       147 Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         147 SAVTGEGIEELKEYLDE  163 (164)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=2e-24  Score=157.53  Aligned_cols=154  Identities=19%  Similarity=0.170  Sum_probs=107.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY   76 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   76 (197)
                      ..++|+++|++|||||||++++.+..+... ...++.......+.+++. ..+.+||+||.......        ....+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~  118 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEV  118 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999999764322 222222333333444443 37889999997332110        00125


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...          .     ..+..... .+
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~-~~  181 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGR-PD  181 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCC-Cc
Confidence            689999999999999888776 56666665543 4789999999999965432          1     13333334 47


Q ss_pred             EEEecccCCCCHHHHHHHHHHH
Q 029177          156 YIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++++||+++.|++++++++.+.
T Consensus       182 ~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         182 AVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             eEEEEcCCCCCHHHHHHHHHhh
Confidence            9999999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=6.3e-24  Score=150.05  Aligned_cols=158  Identities=16%  Similarity=0.185  Sum_probs=107.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .|+++|++|+|||||+++|..+.+...+.++..... ...+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999999877655443332222 2223332 13468889999999988888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----Hc-CCcEEEEecc
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LI-GAAVYIECSS  161 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa  161 (197)
                      |+++....... . .+..+..  .+.|+++|+||+|+......         ...+....+..    .. ...+++++||
T Consensus        82 d~~~~~~~~~~-~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI-E-AIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH-H-HHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEeec
Confidence            99985432222 1 1222332  37899999999998642110         00111111111    11 1247999999


Q ss_pred             cCCCCHHHHHHHHHHHHc
Q 029177          162 KTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~  179 (197)
                      ++++|++++++++.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=1e-23  Score=164.15  Aligned_cols=157  Identities=15%  Similarity=0.224  Sum_probs=109.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccc-------c
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP-------L   74 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~-------~   74 (197)
                      .+.++|+++|.+|||||||+|+|.+..+..  ....++.......+..++  ..+.||||||... +..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            467899999999999999999999877642  222233333344455566  4678999999843 322221       2


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-C
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-A  153 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  153 (197)
                      .+..+|++++|+|.++  ++......|+..+...  +.|.++|+||+|+...             ...+..++....+ .
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~  190 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPD  190 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCC
Confidence            3678999999999765  3334424456655543  5678899999998542             1234445544443 3


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+++++||++|.|++++|+++.+.+..
T Consensus       191 ~~i~~iSAktg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        191 SLLFPISALSGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             cEEEEEeccCccCHHHHHHHHHHhCCC
Confidence            479999999999999999999987754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=1e-23  Score=145.62  Aligned_cols=153  Identities=38%  Similarity=0.668  Sum_probs=116.1

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC
Q 029177           12 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        12 vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (197)
                      ++|++|+|||||++++.+... .....++....+............+.+||+||+..+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999999776 4454455445555556666677899999999998888777788899999999999999


Q ss_pred             hhhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHH
Q 029177           91 KASYENISKKW--IPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVK  168 (197)
Q Consensus        91 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  168 (197)
                      +.+.... ..|  .........+.|+++++||+|+.....          ................+++++|+.++.|++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  149 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE  149 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence            9998888 444  222233336899999999999976432          221211233334444589999999999999


Q ss_pred             HHHHHHH
Q 029177          169 TVFDAAI  175 (197)
Q Consensus       169 ~~~~~i~  175 (197)
                      ++++++.
T Consensus       150 ~~~~~l~  156 (157)
T cd00882         150 ELFEELA  156 (157)
T ss_pred             HHHHHHh
Confidence            9999885

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=8.3e-24  Score=147.65  Aligned_cols=146  Identities=21%  Similarity=0.214  Sum_probs=105.3

Q ss_pred             EEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccccCcCCCc
Q 029177           11 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   80 (197)
Q Consensus        11 ~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~   80 (197)
                      +++|.+|+|||||+++|.+..  +.....+++.+........++  ..+.+|||||+..+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999864  333444555444444555555  6788999999987544        2334578899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++++|+|.++..+....  .+...+...  +.|+++|+||+|+.+...          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999886554443  233444433  689999999999976432          1     2223345554789999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 029177          161 SKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~  177 (197)
                      +++++|++++++++++.
T Consensus       140 a~~~~gv~~l~~~l~~~  156 (157)
T cd01894         140 AEHGRGIGDLLDAILEL  156 (157)
T ss_pred             cccCCCHHHHHHHHHhh
Confidence            99999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.2e-23  Score=159.46  Aligned_cols=155  Identities=16%  Similarity=0.145  Sum_probs=108.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-c-------cccCcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L-------RPLSYRG   78 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~-------~~~~~~~   78 (197)
                      +|+++|.||||||||+|+|.+..+.  .....|+..... .+...+. ..+.||||||...... .       ....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999997653  233334433322 2323222 4688999999754321 1       2345689


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|++++|+|+++..+.+   ..+...+...  +.|+++|+||+|+.+...           ..+....++...+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-----------LLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-----------HHHHHHHHHhhcCCCceEE
Confidence            99999999999876654   2344444443  789999999999964321           2234455555555557999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +||++|+|++++++++.+.+...
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~  166 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEG  166 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999877443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=5e-24  Score=142.44  Aligned_cols=114  Identities=32%  Similarity=0.547  Sum_probs=87.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ||+|+|++|||||||+++|.+..+..  .+.+... ...............+.+||++|++.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999987751  1112222 22223445666666799999999999888877789999999999


Q ss_pred             EECCChhhHHHHHHH--HHHHHhhhCCCCCEEEEeeCCC
Q 029177           86 FSLISKASYENISKK--WIPELRHYAPTVPIVLVGTKQD  122 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D  122 (197)
                      ||++++++++.+...  |+..+....+++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999997433  6677776667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.92  E-value=5e-23  Score=137.32  Aligned_cols=168  Identities=24%  Similarity=0.325  Sum_probs=140.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECC-eEEEEEEEecCCCcCc-ccccccCcCCCcE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQEDY-NRLRPLSYRGADV   81 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~   81 (197)
                      +..||+++|..++|||+|++++..+...  .++.+|..+.|...+..+. -.-.+.++||.|...+ ..+-.++++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            5689999999999999999999986543  4566787888887776643 3457889999998887 5567778999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      +++||+..|++||... ..+-..+..+.  ..+|+++++||+|+.++..          +..+.++.|++.-.. .++++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999987 55555555544  4799999999999987765          899999999999986 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~~~~~  185 (197)
                      ++.+...+-+.|..+...+..+..+.
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCcccc
Confidence            99999999999999999887666554

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=156.95  Aligned_cols=156  Identities=18%  Similarity=0.129  Sum_probs=102.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCC-----------cCccccccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-----------EDYNRLRPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~   74 (197)
                      ..++|+++|.+|||||||+++|.+..+...+.+++. .....+...    .+++|||||.           +.++..+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            468999999999999999999998876554444332 112222222    5789999993           444444444


Q ss_pred             Cc----CCCcEEEEEEECCChhhHHH---------HHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177           75 SY----RGADVFLLAFSLISKASYEN---------ISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT  141 (197)
Q Consensus        75 ~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  141 (197)
                      ++    ..++++++|+|.++...+..         ....+...+..  .++|+++|+||+|+.+..             .
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------~  147 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------D  147 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------H
Confidence            43    34578888888765322210         00112233332  379999999999996531             2


Q ss_pred             HHHHHHHHHcCC--------cEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          142 AQGEELKKLIGA--------AVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       142 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +...++++.++.        .+++++||++| |+++++++|.+.+...+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            344556665553        15899999999 99999999999764433

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=3.2e-23  Score=144.93  Aligned_cols=147  Identities=16%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             EECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCc--CCCcEE
Q 029177           12 TVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   82 (197)
Q Consensus        12 vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~   82 (197)
                      ++|.+|+|||||++++.+..+.... ..++.+.....+.+++  ..+.+|||||+..+...      +..++  +++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999987644333 3333444445556665  57889999999876643      33444  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++|+|++++++..    .+...+...  +.|+++|+||+|+.+...          +. .....++...+. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence            9999999865432    233333332  789999999999976432          22 234566777776 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      +++|++++++++.+.+
T Consensus       141 ~~~~~~~l~~~l~~~~  156 (158)
T cd01879         141 KGEGIDELKDAIAELA  156 (158)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3.1e-23  Score=160.35  Aligned_cols=158  Identities=20%  Similarity=0.197  Sum_probs=113.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~   78 (197)
                      .-.|+++|.||||||||+++++.... ..+|..|+.......+.+++ ...+++||+||.....    .+...   .++.
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            35799999999999999999998643 23444454443333444443 2567899999975322    12222   3457


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           79 ADVFLLAFSLISK---ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        79 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ++++++|+|+++.   ++++.. ..|.+.+..+.   .+.|+++|+||+|+.+..           ...+....+++.++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~  303 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG  303 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence            9999999999987   566666 66766666543   478999999999996542           22344556666666


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      . +++++||++++|++++++++.+.+
T Consensus       304 ~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       304 K-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            5 899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=2e-23  Score=162.72  Aligned_cols=152  Identities=22%  Similarity=0.237  Sum_probs=109.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-C--------cccccccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-D--------YNRLRPLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~--------~~~~~~~~   75 (197)
                      ..++|+++|.+|||||||+|+|.+.... .+...++.+.....+.+.+. ..+.+|||+|.. .        |.+.+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999987543 33444555555666666432 478899999972 2        21211 13


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.....          +     .....  +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~~--~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLEE--GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHHh--CCC
Confidence            6789999999999999887766 55655555433 4789999999999964221          1     11111  223


Q ss_pred             EEEEecccCCCCHHHHHHHHHHH
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++.+||++|+|+++++++|.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            68999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=4.2e-23  Score=165.20  Aligned_cols=150  Identities=21%  Similarity=0.228  Sum_probs=114.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~   75 (197)
                      ..+||+++|++|||||||+|+|++..  +...+.+++.+.+...+.+++  ..+.+|||||...+....        ..+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            35799999999999999999999864  455666666777777777887  556899999987654322        346


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ++++|++++|||++++.+++..   |+..+..  .+.|+++|+||+|+...                ....+++..+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            7899999999999998887663   5555443  37899999999999542                11244555665 7


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++.+||++ .|++++|+.+.+.+..
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHH
Confidence            89999998 6999999998887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2.4e-23  Score=168.81  Aligned_cols=160  Identities=19%  Similarity=0.167  Sum_probs=112.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc----------cccc-
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----------NRLR-   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~-   72 (197)
                      ..++|+++|.+|||||||+++|++..+  .....+++.+.....+..++.  .+.+|||||..+.          .... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998754  344455555666666677775  4569999996432          1111 


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ..+++.+|++++|+|++++.++.+.  .++..+..  .+.|+++|+||+|+.+...        ......+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2346899999999999999888876  34444443  3789999999999965321        0011112222112223


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ..+++++||++|.|++++|..+.+.+.
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999988663

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=2.7e-23  Score=147.78  Aligned_cols=152  Identities=24%  Similarity=0.269  Sum_probs=104.5

Q ss_pred             EECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCc----cccc---ccCcCCCcEE
Q 029177           12 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF   82 (197)
Q Consensus        12 vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~----~~~~---~~~~~~~~~~   82 (197)
                      ++|++|||||||+++|.+... ...+..++.......+.++ +  ..+.+||+||....    ...+   ...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998764 2334444433333344455 4  56789999997432    2222   2236789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177           83 LLAFSLISK------ASYENISKKWIPELRHYA--------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK  148 (197)
Q Consensus        83 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ++|+|+++.      .++... ..|...+....        .+.|+++|+||+|+.....          ..........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence            999999998      466666 55555554332        3789999999999975432          2222122333


Q ss_pred             HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          149 KLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ...+ .+++++||+++.|++++++++...
T Consensus       148 ~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEG-AEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence            3334 479999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=8.8e-23  Score=142.37  Aligned_cols=145  Identities=25%  Similarity=0.318  Sum_probs=106.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~   77 (197)
                      ++|+++|++|+|||||++++.+...  .....+++.......+..++  ..+.+||+||..++...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999999999998754  22333443444444455554  57789999998665432        223567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .+|++++|+|++++.+.... ..+..     ..+.|+++|+||+|+.+...          .       ..... ..+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~-~~~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLA-GKPII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccC-CCceE
Confidence            89999999999998887775 33322     34789999999999976432          1       22333 35899


Q ss_pred             EecccCCCCHHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ++||+++.|+++++.++.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=3.8e-23  Score=149.64  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=99.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cce-eeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR   72 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~--~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   72 (197)
                      -+|+++|++++|||||+++|+.  +.+...+.            .+. .+.......++...+.+++||+||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  55544321            011 11122223334445788999999999999888


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH--
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL--  150 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  150 (197)
                      ..+++++|++++|||+++... ... ..++..+..  .++|+++|+||+|+.+...         ....++..++...  
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            899999999999999987432 222 233333333  3789999999999964321         0123344444322  


Q ss_pred             -----cCCcEEEEecccCCCCHH
Q 029177          151 -----IGAAVYIECSSKTQQNVK  168 (197)
Q Consensus       151 -----~~~~~~~~~Sa~~~~~i~  168 (197)
                           .+. +++++||++|+|+.
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~  171 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASL  171 (194)
T ss_pred             CccccCcc-CEEEeehhcccccc
Confidence                 244 89999999997763

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.5e-23  Score=167.93  Aligned_cols=153  Identities=19%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--------cccccccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~   76 (197)
                      ..+|+|+|.+|||||||+|+|.++...  .....++.+.....+..++  ..+.+|||||.+.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987542  2333333444555556666  4577999999763        222344567


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +.+|++++|||+++..+...  ..+...+..  .+.|+++|+||+|+....             .+....+....+  ..
T Consensus       116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~~~g~~--~~  176 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALWSLGLG--EP  176 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHHhcCCC--Ce
Confidence            89999999999999877654  345555554  379999999999985421             122222333333  45


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++|.|++++|+++++.+..
T Consensus       177 ~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        177 HPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEEEcCCCCCcHHHHHHHHhhccc
Confidence            799999999999999999998755

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=7.4e-24  Score=140.30  Aligned_cols=154  Identities=21%  Similarity=0.298  Sum_probs=127.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+.+.++|..++|||||+|....+.+...-.|+.+....   .+....+.+.+||.+||..|+++|..+.+.++++++|+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            468999999999999999999998887777777644332   34555588899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-------CcEEEE
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-------AAVYIE  158 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  158 (197)
                      |+.+++..+..+..+.+.+.+.. .++|+++.|||.|+.+.-.            .   .++..+.|       .+.+|.
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s  161 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS  161 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence            99999999888777777777665 7899999999999987422            1   12233332       346899


Q ss_pred             ecccCCCCHHHHHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +|+++..|++.+.+|++++.
T Consensus       162 iScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  162 ISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EEEcCCccHHHHHHHHHHHh
Confidence            99999999999999999865

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=4.2e-23  Score=166.01  Aligned_cols=147  Identities=24%  Similarity=0.279  Sum_probs=112.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   76 (197)
                      .++|+++|.+|+|||||+|+|.+...  .....+++.+.....+.+++  ..+.+|||||.+++...        ....+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            47999999999999999999998653  44555566666666777777  56789999998765432        22357


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .++|++++|||++++.+++.. ..|..     ..+.|+++|+||+|+.....          ..        ...+ .++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~~  347 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KPV  347 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cce
Confidence            889999999999999887765 44433     34789999999999965322          11        2223 478


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++|+|++++++++.+.+..
T Consensus       348 i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        348 IRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999998753

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2e-22  Score=162.32  Aligned_cols=157  Identities=24%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------   72 (197)
                      ..++|+++|.+|+|||||+++|++...  .....+++.+.....+..++.  .+.+|||||..++....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            468999999999999999999998642  344455555555555556664  67799999987654432           


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHH-
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKL-  150 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-  150 (197)
                      ...++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.+..           ...++. ..+... 
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~  313 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL  313 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence            2356889999999999998777664  344444433  78999999999997211           111111 122222 


Q ss_pred             --cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          151 --IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       151 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                        .+..+++++||++|.|++++|+++.+.+.
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence              23458999999999999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=4.6e-23  Score=142.10  Aligned_cols=147  Identities=20%  Similarity=0.234  Sum_probs=105.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCc--CC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG   78 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~   78 (197)
                      ++|+++|.||||||||+|+|++... ..++.+++.+.....+.+.+  ..+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999654 34556666666666777777  56779999996544322      12222  57


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      .|++++|+|+++.+.-.    ++..++.+.  ++|+++++||+|+.....          +. .....+.+.++. |++.
T Consensus        79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~-id~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------IE-IDAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------EE-E-HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CE-ECHHHHHHHhCC-CEEE
Confidence            99999999999854322    333444444  799999999999987654          22 235678888887 8999


Q ss_pred             ecccCCCCHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAA  174 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i  174 (197)
                      +||++++|++++++.|
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=9e-23  Score=146.65  Aligned_cols=157  Identities=18%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   71 (197)
                      +|+++|.+|+|||||+++|.+.........+.                 .......+...  ...+.+||+||+.++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            48999999999999999999876654332211                 11111122223  367889999999988888


Q ss_pred             cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +..+++.+|++++|+|+++..+....  .++..+..  .+.|+++++||+|+.....        .....+...+..+..
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  146 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI  146 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence            88888999999999999987655443  33444443  4799999999999975221        001223333333332


Q ss_pred             -------------CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 -------------GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                                   ...+++++||++|.|++++++++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                         2358999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04163 Era Era subfamily

Probab=99.90  E-value=1.3e-22  Score=142.62  Aligned_cols=155  Identities=19%  Similarity=0.176  Sum_probs=105.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   76 (197)
                      ..+|+++|++|+|||||++++.+.......  ..++.....  .........+.+||+||.......        ....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR--GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE--EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            478999999999999999999986542221  122211111  122333467889999997654322        23346


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ..+|++++|+|++++.+...  ..+...+...  +.|+++++||+|+.....          ...+....+....+..++
T Consensus        81 ~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~  146 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI  146 (168)
T ss_pred             HhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence            78999999999998732222  3344444443  689999999999974322          233344455555555689


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++|++++.|++++++.+.+.
T Consensus       147 ~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         147 FPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEEeccCCChHHHHHHHHhh
Confidence            999999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=1.9e-22  Score=166.61  Aligned_cols=159  Identities=20%  Similarity=0.202  Sum_probs=114.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCCc-------eeeeeeEE--EEE---CCeEEEEEEEecCCCcCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPT-------VFDNFSAN--VVV---DGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~~-------~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~   68 (197)
                      =+|+++|+.++|||||+++|+...       +...+..+       ..+.....  +.+   ++..+.+++|||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998631       11122111       01111112  222   456689999999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177           69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ...+..+++.+|++++|+|+++..+.... ..|...+.   .++|+++|+||+|+.+..            ..+...++.
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el~  147 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEIE  147 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHHH
Confidence            98888999999999999999998776665 44443333   368999999999986421            122234555


Q ss_pred             HHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          149 KLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       149 ~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +.++..  .++++||++|.|++++|+++.+.+..+.
T Consensus       148 ~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       148 EVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            555542  4899999999999999999999876554

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-23  Score=143.39  Aligned_cols=169  Identities=18%  Similarity=0.222  Sum_probs=122.1

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcC------CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccC
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSN------TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS   75 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   75 (197)
                      |.+...+.++++|..++|||||+.+....      ..+++...++.-....++.+++  ..+.|||..||+..+++|..+
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHH
Confidence            55566789999999999999999877652      2222222222222233444554  567799999999999999999


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--  152 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (197)
                      +..+|++++++|+++++.++.....+...+.... .+.|+++.+||.|+.+.-.         .-..+.....+...+  
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~---------~~El~~~~~~~e~~~~r  160 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME---------AAELDGVFGLAELIPRR  160 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh---------HHHHHHHhhhhhhcCCc
Confidence            9999999999999999999888555544444333 7999999999999977422         011122222222222  


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ..++.++||.+|+|+++...|++..+.+.
T Consensus       161 d~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            23688999999999999999999988776

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=4.4e-22  Score=163.87  Aligned_cols=154  Identities=17%  Similarity=0.205  Sum_probs=109.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +..+|+++|++++|||||+++|.+..+...+.+... ......+.+++. ..+.|||||||+.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            457899999999999999999998877655444332 222334444432 267899999999999998888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-------C-CcEE
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-------G-AAVY  156 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~  156 (197)
                      |+|+++....... ..+ .....  .++|+++++||+|+.+.             ..++..+.....       + ..++
T Consensus       165 VVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             EEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence            9999875433332 222 22222  37899999999999642             222222322222       2 2479


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++||++|+|++++++++...
T Consensus       228 v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             EEEECCCCCChHHHHHhhhhh
Confidence            999999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.1e-21  Score=139.01  Aligned_cols=155  Identities=24%  Similarity=0.270  Sum_probs=104.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   73 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~   73 (197)
                      .++|+++|++|+|||||++++.+....  .....++.......+..++.  .+.+||+||..+....           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999986532  22223333333444555653  4679999997544211           11


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHHHcC
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKKLIG  152 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  152 (197)
                      ..+..+|++++|+|++++.+....  .+...+..  .+.|+++++||+|+.+...          ...+. ...+.+..+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  145 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence            235689999999999998776554  33333333  2689999999999976421          11121 222333332


Q ss_pred             ---CcEEEEecccCCCCHHHHHHHHHHH
Q 029177          153 ---AAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       153 ---~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                         ..+++++||++++|++++++++.+.
T Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         146 FLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence               3589999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.5e-22  Score=131.42  Aligned_cols=158  Identities=16%  Similarity=0.240  Sum_probs=123.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.++|+++|..++||||++..|..+.. ....||++.. ...+.+.+  +.|.+||.+|+++.+..|.+++....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFn-vetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-ccccccccee-EEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            3578999999999999999999988753 4445555433 23344444  889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HHHcC-CcEEEEe
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KKLIG-AAVYIEC  159 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~  159 (197)
                      |+|..+++..++++..+...+.... .+.|++|.+||.|+.+.            ..+.+...+   ..-.+ .+-+..+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A------------~~pqei~d~leLe~~r~~~W~vqp~  158 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA------------MKPQEIQDKLELERIRDRNWYVQPS  158 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc------------cCHHHHHHHhccccccCCccEeecc
Confidence            9999999999998777766666544 68899999999999875            333333332   22222 1235679


Q ss_pred             cccCCCCHHHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +|.+|+|+.|.|.|+.+.+
T Consensus       159 ~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  159 CALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             ccccchhHHHHHHHHHhhc
Confidence            9999999999999998865

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=1.7e-22  Score=141.42  Aligned_cols=142  Identities=18%  Similarity=0.151  Sum_probs=99.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc----ccCcCCCcEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i~   84 (197)
                      +|+++|.+|+|||||++++.+.. ... ..+.      .+.+...    .+||+||.......+    ...+.++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccC-ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987643 111 1111      1122222    269999973322111    123679999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  163 (197)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+.+             ...+.+.+++.+.+. .|++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999999877633   233332   23679999999999854             334566777777774 4899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029177          164 QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|++++|+++.+.+.+.
T Consensus       132 g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ccCHHHHHHHHHHhchhh
Confidence            999999999998876443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=9.1e-22  Score=156.01  Aligned_cols=158  Identities=22%  Similarity=0.222  Sum_probs=113.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRGA   79 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~   79 (197)
                      ..|+++|.||||||||++++++.... .++..|+.......+.+++ ...+.+||+||...-.    .+...   .++.+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            37999999999999999999986532 3444555443333344441 2578899999974321    12222   24579


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           80 DVFLLAFSLISK---ASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        80 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +++++|+|+++.   +.++.. ..|...+..+.   .+.|++||+||+|+.+.              .+....+.+.++ 
T Consensus       238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~-  301 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLG-  301 (424)
T ss_pred             CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhC-
Confidence            999999999865   566666 66777776654   37899999999998431              234456666666 


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      .+++++||++++|++++++++.+.+...+
T Consensus       302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        302 PKVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            48999999999999999999998775543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=2.9e-22  Score=161.39  Aligned_cols=152  Identities=21%  Similarity=0.236  Sum_probs=110.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--------cccccccCcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG   78 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~   78 (197)
                      +|+++|.+|||||||+|+|.+...  ...+.+++.+.....+..++  ..+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998653  33444555555555666676  4688999999743        22334456789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|++++|+|..+..+..+.  .+...+++.  +.|+++|+||+|+.....          .    ..+ ...++..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~----------~----~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA----------V----AAE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc----------c----HHH-HHhcCCCCeEE
Confidence            9999999999886554442  344445443  789999999999865321          1    112 34566667999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +||++|.|++++++++.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999887543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=1.1e-21  Score=150.47  Aligned_cols=159  Identities=23%  Similarity=0.224  Sum_probs=108.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~   75 (197)
                      +.-.|+++|.+|||||||+|+|++......  ...++..........++  ..+.+|||||......        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            456799999999999999999998765321  22222222222222232  6788999999754321        12234


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +..+|++++|+|+++..+-..  ..+...+..  .+.|+++|+||+|+.....          ........+.+..+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            678999999999998433222  334444443  2689999999999974322          23345556666666668


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++.+||++++|++++++++.+.+..
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999999998754

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.7e-22  Score=144.97  Aligned_cols=162  Identities=15%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC----CCCCCC----CCceeeeeeEEEEEC------------CeEEEEEEEecCCCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY----VPTVFDNFSANVVVD------------GSTVNLGLWDTAGQED   67 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~----~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~   67 (197)
                      ++|+++|++|+|||||+++|...    .+...+    ..++.......+.+.            +..+.+++||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999872    121111    122212111222222            2357889999999976


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-  146 (197)
                      +..........+|++++|+|+++....... ..+. ....  .+.|+++++||+|+......        ....++..+ 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~--------~~~~~~~~~~  148 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEER--------ERKIEKMKKK  148 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHH
Confidence            543333345678999999999885544332 2221 1121  26799999999998643210        011122222 


Q ss_pred             HHHH-----cCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          147 LKKL-----IGAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       147 ~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +...     ....+++++||++++|++++++++...+.-+
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1111     2234899999999999999999999877543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=5.3e-22  Score=160.06  Aligned_cols=150  Identities=21%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~   77 (197)
                      .+|+++|.+|||||||+++|.+...  .....+++.+.....+.+++  ..+.+|||||+...        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            4899999999999999999998653  34444555555556666777  67889999999762        222344578


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .+|++++|+|+++..+..+.  .+...++..  +.|+++|+||+|+.+..              +...++ ..++...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence            99999999999886554332  223334433  78999999999964311              122222 345554589


Q ss_pred             EecccCCCCHHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ++||++|.|++++++++.+..
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998843

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.1e-21  Score=155.88  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=108.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc----c---cccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~---~~~~~~~   78 (197)
                      ...|+|||.||||||||+++|+..... .+|..|+.......+...+  ..+++||+||.....+    +   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            357999999999999999999985432 3455555444444555566  5788999999642111    1   1223578


Q ss_pred             CcEEEEEEECCCh----hhHHHHHHHHHHHHhhh------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH
Q 029177           79 ADVFLLAFSLISK----ASYENISKKWIPELRHY------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTA  142 (197)
Q Consensus        79 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  142 (197)
                      +|++++|+|+++.    +.+... ..+...+..+            ..+.|++||+||+|+.+...          .. +
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l~-e  304 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------LA-E  304 (500)
T ss_pred             cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------HH-H
Confidence            9999999999863    334333 3333333322            23689999999999965332          11 2


Q ss_pred             HHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          143 QGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      .........+. +++++||++++|+++++.++.+.+...+
T Consensus       305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            22223334454 8999999999999999999998875543

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=1.8e-21  Score=155.08  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=107.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--ccccc------cCcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG   78 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~------~~~~~   78 (197)
                      .+|+++|.+|||||||+|+|.+..... +...++.+.....+.+.+. ..+.+|||+|..+.  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999865432 3334444444555555552 25679999998432  11122      23578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|++++.+++.. ..|...+.... .+.|+++|+||+|+.....           ...   . ....+...++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~---~-~~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRI---D-RDEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHH---H-HHhcCCCceE
Confidence            9999999999999887776 44444444332 4799999999999964211           000   1 1123432358


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+||++|+|++++++++.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998753

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=1.2e-21  Score=163.64  Aligned_cols=156  Identities=15%  Similarity=0.208  Sum_probs=110.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee---eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +..+|+++|++++|||||+++|....+.....+...   ..+......++....+.||||||++.|..++...+..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            456899999999999999999998766544333221   22222333344558899999999999999998899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-------HHHcC-Cc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-------KKLIG-AA  154 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~  154 (197)
                      ++|+|+++....... ..+ ..+..  .++|+++++||+|+....             .++..+.       ...++ ..
T Consensus       323 ILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~-------------~e~v~~eL~~~~ll~e~~g~~v  385 (742)
T CHL00189        323 ILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANAN-------------TERIKQQLAKYNLIPEKWGGDT  385 (742)
T ss_pred             EEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccC-------------HHHHHHHHHHhccchHhhCCCc
Confidence            999999885433332 222 22222  378999999999996521             1111111       22222 35


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHH
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +++++||++|+|++++++++....
T Consensus       386 pvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        386 PMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             eEEEEECCCCCCHHHHHHhhhhhh
Confidence            899999999999999999998754

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=1.7e-21  Score=161.16  Aligned_cols=166  Identities=20%  Similarity=0.208  Sum_probs=117.2

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CCC-------ceeeeeeEEE--EE---CCeEEEEEEEe
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVP-------TVFDNFSANV--VV---DGSTVNLGLWD   61 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----~~~-------~~~~~~~~~~--~~---~~~~~~~~~~D   61 (197)
                      ||..++.-+++++|+.++|||||+.+|+..  .+...     +..       ...+.....+  .+   ++..+.+++||
T Consensus         1 ~~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD   80 (600)
T PRK05433          1 MMDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID   80 (600)
T ss_pred             CCccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence            666677779999999999999999999862  22110     000       0011111111  11   45568999999


Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT  141 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  141 (197)
                      |||+.+|...+...++.+|++++|+|+++..+.... ..|.....   .++|+++|+||+|+.+..            ..
T Consensus        81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~  144 (600)
T PRK05433         81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PE  144 (600)
T ss_pred             CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HH
Confidence            999999998888899999999999999987665554 34433322   378999999999986421            11


Q ss_pred             HHHHHHHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          142 AQGEELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       142 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ....++.+.++..  .++.+||++|.|++++++++.+.+..+.
T Consensus       145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            2233444444442  4899999999999999999999886553

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=1e-21  Score=140.45  Aligned_cols=152  Identities=14%  Similarity=0.081  Sum_probs=96.7

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCeEEEEEEEecCCCcC----------ccc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED----------YNR   70 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~----------~~~   70 (197)
                      +.+.+..+|+++|++|+|||||++++.+..+...+.++...... .....++   .+.+||+||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            45567889999999999999999999987643333333211111 1122232   578999999532          222


Q ss_pred             ccccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           71 LRPLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        71 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ....+++   .++++++|+|++++-+....  .+...+...  +.|+++++||+|+.....        .....++.+..
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~  157 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA  157 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            2222333   46899999999886555553  233444433  789999999999964321        00223444455


Q ss_pred             HHHcC-CcEEEEecccCCCCHH
Q 029177          148 KKLIG-AAVYIECSSKTQQNVK  168 (197)
Q Consensus       148 ~~~~~-~~~~~~~Sa~~~~~i~  168 (197)
                      ....+ ..++|++||++|+|++
T Consensus       158 l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       158 LKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HhhccCCCceEEEECCCCCCCC
Confidence            55543 2379999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=2.9e-21  Score=140.51  Aligned_cols=118  Identities=13%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCC-cEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~d   87 (197)
                      +|+++|++|||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999987766554442211111111113346788999999999988888888888 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccc
Q 029177           88 LISK-ASYENISKKWIPELRHY---APTVPIVLVGTKQDLRED  126 (197)
Q Consensus        88 ~~~~-~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~  126 (197)
                      +++. .++......+...+...   .+++|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9998 67777644444443322   258999999999998753

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=5e-21  Score=161.21  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=109.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +.-.|+++|+.++|||||+++|....+.....+.. .......+.+++  ..++|||||||+.|..++...+..+|++++
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            56789999999999999999998877655443333 222233445555  578899999999999999888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH--HHHHHHHHcC-CcEEEEecc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA--QGEELKKLIG-AAVYIECSS  161 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~Sa  161 (197)
                      |||+++....... ..| .....  .++|+++++||+|+.+....        .+..+  +...++..++ ..+++++||
T Consensus       367 VVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~e--------~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        367 VVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANPD--------RVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             EEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCHH--------HHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            9999885332222 222 22222  37999999999999652110        01100  0011223333 358999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 029177          162 KTQQNVKTVFDAAIKV  177 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~  177 (197)
                      ++|+|++++|+++...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999999999754

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=4.4e-21  Score=138.13  Aligned_cols=161  Identities=20%  Similarity=0.216  Sum_probs=108.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------CCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      +..+|+++|+.++|||||+++|....-....                   ...+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4679999999999999999999863211100                   000011111222211334788899999999


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-  145 (197)
                      +|.......+..+|++++|+|+.+.......  ..+..+...  ++|+++++||+|+...+.         ....++.. 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~~  148 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIKE  148 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHHH
T ss_pred             ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHHH
Confidence            9888877789999999999999987555443  334445444  789999999999984321         01112222 


Q ss_pred             HHHHHcC-----CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          146 ELKKLIG-----AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       146 ~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .+.+.++     .+|++.+||.+|.|++++++.+.+.+.
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            3444442     468999999999999999999998763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=4.3e-21  Score=138.98  Aligned_cols=159  Identities=18%  Similarity=0.089  Sum_probs=100.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC----------ccccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLRPL   74 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~   74 (197)
                      ....+|+++|++|+|||||+++|.+..+...+.++............  ...+.+||+||...          +......
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            45689999999999999999999987654444444322111111111  25788999999532          2222222


Q ss_pred             CcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           75 SYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +++   .++++++++|.+++.+....  .+...+..  .+.|+++++||+|+.....        .....+.........
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~~  167 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKFG  167 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHhc
Confidence            333   34688889998876554332  22233332  2689999999999865321        001112233333333


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      . .+++++||++++|++++++.+.+.+
T Consensus       168 ~-~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        168 D-DEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             C-CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            3 4899999999999999999998765

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=3.6e-21  Score=140.15  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=101.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--CCCC---CceeeeeeEEEEEC---------------------------C---
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYV---PTVFDNFSANVVVD---------------------------G---   52 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~---~~~~~~~~~~~~~~---------------------------~---   52 (197)
                      ++|+++|+.|+|||||+..+.+....  ....   .+....+. .+...                           +   
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYA-NAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET   79 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeeccc-ccccccccCcCCCCccccccccccccccccccCCcc
Confidence            47999999999999999999653110  1100   00000000 00000                           1   


Q ss_pred             -eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           53 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        53 -~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                       ....+.|||+||+++|...+...+..+|++++|+|++++    .+.+.+     ..+... ...|+++|+||+|+....
T Consensus        80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-----~~~~~~-~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-----AALEIM-GLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-----HHHHHc-CCCcEEEEEEchhccCHH
Confidence             115788999999998877777778899999999999974    222222     222221 234799999999997532


Q ss_pred             hhhcCCCCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          128 QYLINHPGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ..        ....+...++...+  ...+++++||++|+|++++++++.+.+..+
T Consensus       154 ~~--------~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         154 QA--------LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HH--------HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            10        01123334444332  234799999999999999999999877554

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=4.9e-21  Score=158.19  Aligned_cols=157  Identities=20%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc---CCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS---NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.|+++|++++|||||+++|.+   +.+..++.++. .+.....+..++  ..+.+||+||+++|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            4689999999999999999986   33433433333 233333455555  78889999999999888777889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC---CcEE
Q 029177           84 LAFSLIS---KASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG---AAVY  156 (197)
Q Consensus        84 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  156 (197)
                      +|+|+++   +.+.+.+     ..+...  ++| +++|+||+|+.+....        ....++..++...++   ..++
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~--------~~~~~ei~~~l~~~~~~~~~~i  143 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEI--------KRTEMFMKQILNSYIFLKNAKI  143 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCcE
Confidence            9999998   4444443     222222  677 9999999999764320        012345556665553   3589


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++||++|+|+++++.++...+...
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHHHhC
Confidence            9999999999999999998766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.3e-20  Score=151.96  Aligned_cols=159  Identities=21%  Similarity=0.202  Sum_probs=108.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------   72 (197)
                      ..++|+++|.+|+|||||+++|++..  ......+++.+.....+..++  ..+.+|||||........           
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46999999999999999999999753  233444455555555555566  456799999975433221           


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ...++.+|++++|+|++++.+..+.  .+...+...  +.|+++++||+|+.+....        ....++........+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTM--------EEFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHH--------HHHHHHHHHhccccc
Confidence            1246789999999999998777664  344444433  6899999999999743210        001111111112234


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ..+++++||+++.|++++++.+.+..
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999988754

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=9.1e-21  Score=149.49  Aligned_cols=161  Identities=18%  Similarity=0.152  Sum_probs=112.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA   79 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~   79 (197)
                      ..|++||.||||||||+|+|++.+. ...+..|+.......+...+ ...+.|+|+||...-.+       .....++.+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            3699999999999999999997543 23444455444444444443 23578999999743211       111246789


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           80 DVFLLAFSLI---SKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        80 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      |++++|+|++   +.+.++.. ..|+..+..+.   .+.|+++|+||+|+.....          + .+...++....+.
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----------l-~~~l~~l~~~~~~  306 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----------A-EERAKAIVEALGW  306 (390)
T ss_pred             CEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----------H-HHHHHHHHHHhCC
Confidence            9999999998   45566665 66767666653   3689999999999965332          2 2334455555443


Q ss_pred             -cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          154 -AVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       154 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                       .+++.+||++++|++++++++.+.+...
T Consensus       307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        307 EGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence             2689999999999999999999987543

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=4.5e-21  Score=128.33  Aligned_cols=167  Identities=26%  Similarity=0.536  Sum_probs=137.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||.++|++..|||||+-.+.++.+.+++..+.+ ....+++.+.+..+.+-+||..|++++..+.+..-..+-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            58999999999999999999999988777766664 55578889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||.+.++++..+ ..|..+.+.... -+|+ +||+|.|+.-.-.     ++-+.-...+++.+++-.++ +.|.+|+...
T Consensus       100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s  171 (205)
T KOG1673|consen  100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPI-LVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS  171 (205)
T ss_pred             EecCchHHHHHH-HHHHHHHhccCCccceE-EeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence            999999999999 888887776653 4554 5799999754211     11111233567888888898 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029177          165 QNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~~  181 (197)
                      -|++.+|.-+...+.+-
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999888776543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=5.9e-21  Score=161.57  Aligned_cols=157  Identities=22%  Similarity=0.208  Sum_probs=112.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-ccc----------c
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRL----------R   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~----------~   72 (197)
                      ...||+++|.+|||||||+|+|++...  ...+.+++.+.+...+.+++..  +.+|||||..+. ...          .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            457999999999999999999998753  4556666666666666777754  559999996421 111          1


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHHHH-
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELKKL-  150 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-  150 (197)
                      ...++.+|++++|+|+++..+..+. . +...+..  .+.|+++|+||+|+.+...            .+... .+... 
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l  590 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDEFR------------RQRLERLWKTEF  590 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence            2236789999999999999888776 3 3344433  3789999999999965321            11111 12222 


Q ss_pred             --cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          151 --IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       151 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                        ....+.+.+||++|.|++++++.+.+.+..
T Consensus       591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              233467999999999999999999887754

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=3.7e-20  Score=137.24  Aligned_cols=149  Identities=19%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~   80 (197)
                      +|+++|.+|+|||||+++|.+... ...+..++.+.....+.+++  ..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998653 23444444444455555666  6788999999754331       1234678999


Q ss_pred             EEEEEEECCChhh-HHHHHHHHH-----------------------------------------HHHhhh----------
Q 029177           81 VFLLAFSLISKAS-YENISKKWI-----------------------------------------PELRHY----------  108 (197)
Q Consensus        81 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~----------  108 (197)
                      ++++|+|++++.. ...+ ...+                                         ..++++          
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999988653 2222 1111                                         111111          


Q ss_pred             ---------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHH
Q 029177          109 ---------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA  173 (197)
Q Consensus       109 ---------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  173 (197)
                                     ...+|+++|+||+|+..               .+++..+++.   ++++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                           12358999999999843               3444455443   35899999999999999999


Q ss_pred             HHHHH
Q 029177          174 AIKVV  178 (197)
Q Consensus       174 i~~~~  178 (197)
                      +.+.+
T Consensus       221 i~~~L  225 (233)
T cd01896         221 IWDKL  225 (233)
T ss_pred             HHHHh
Confidence            98865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=9.2e-21  Score=155.87  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC----------------CeEEEEEEEecCCCcCcccc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------------GSTVNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~D~~g~~~~~~~   71 (197)
                      -|+++|++++|||||+++|.+..+.....++..... ...+..+                .....+.||||||++.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            589999999999999999998876544333221110 0001110                01123889999999999999


Q ss_pred             cccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC-----CC--Cc--
Q 029177           72 RPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG-----AT--PI--  139 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~--~~--  139 (197)
                      +...++.+|++++|||+++   +.+++.+ .    .+..  .++|+++++||+|+..........+.     ..  .+  
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            8889999999999999997   4454443 2    2222  27899999999999642100000000     00  00  


Q ss_pred             -----cHHHHHHHH-------------HHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          140 -----TTAQGEELK-------------KLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       140 -----~~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                           ......++.             .-.+..+++++||++|+|+++++.++....
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                 000001111             123346899999999999999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.1e-21  Score=132.63  Aligned_cols=162  Identities=27%  Similarity=0.425  Sum_probs=135.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .++++++|+.|.||||++++...+.|...+.+++... +......+...+.+..|||+|++.+-.....++-....++++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            7899999999999999999999999999999998544 333333444469999999999999999999999899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ||++.+-++... .+|...+.+.+.++|+++.|||.|.....            .......+-+..+. .+++.||+.+.
T Consensus        90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~  155 (216)
T KOG0096|consen   90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY  155 (216)
T ss_pred             eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence            999999999999 88988888888899999999999987642            11222344445555 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 029177          166 NVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~~  182 (197)
                      |.+.-|.|+.+.+....
T Consensus       156 NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  156 NFERPFLWLARKLTGDP  172 (216)
T ss_pred             ccccchHHHhhhhcCCC
Confidence            99999999999876543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.7e-20  Score=158.86  Aligned_cols=153  Identities=20%  Similarity=0.168  Sum_probs=106.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~   76 (197)
                      ..+|+++|.+|||||||+|+|++...  ......++.+........++  ..+.+|||||.+..        ......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            46899999999999999999998653  23333444444444445555  56789999997632        12233457


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +.+|++++|+|+++.-...+  ..|...+...  +.|+++|+||+|+....             ......+.  .+....
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~~~~~~--lg~~~~  413 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDAAEFWK--LGLGEP  413 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhHHHHHH--cCCCCe
Confidence            89999999999987533333  3455556543  89999999999985421             11112222  233346


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++|.|++++|+++.+.+..
T Consensus       414 ~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        414 YPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEEECCCCCCchHHHHHHHHhccc
Confidence            799999999999999999998754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.7e-20  Score=155.12  Aligned_cols=145  Identities=16%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             CCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccC--cCCCcEEEE
Q 029177           14 GDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLS--YRGADVFLL   84 (197)
Q Consensus        14 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~--~~~~~~~i~   84 (197)
                      |.+|||||||+|++.+..+.. ++..++.+.....+..++  ..+++||+||+.++...      ...+  ...+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            899999999999999876533 344444555555566666  45789999999887654      2222  247899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |+|.++.+..    .++...+.+  .+.|+++++||+|+.+...          +. .+...+++..+. +++++||++|
T Consensus        79 VvDat~ler~----l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERN----LYLTLQLLE--LGIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhh----HHHHHHHHh--cCCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence            9999885432    122233333  3799999999999975432          32 346778888886 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKVV  178 (197)
Q Consensus       165 ~~i~~~~~~i~~~~  178 (197)
                      +|++++++++.+.+
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=5e-20  Score=127.12  Aligned_cols=158  Identities=20%  Similarity=0.227  Sum_probs=118.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCC--------CCCCCC---ceeeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTF--------PTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR   72 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   72 (197)
                      +....||+|+|+.++||||++++++....        ..++..   ++...-.......+ ...+.+++||||++|.-+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHH
Confidence            44578999999999999999999998653        122222   32111111222222 2566799999999999999


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-  151 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (197)
                      ..+.+++.++++++|.+.+..+ .. ...+..+....+ +|++|++||+|+...            .+++..+++...- 
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~~  150 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLEL  150 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhcc
Confidence            9999999999999999999998 33 455555555433 999999999999875            4556666655544 


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      -..+.++.+|.++++..+.++.+...
T Consensus       151 ~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         151 LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCCceeeeecccchhHHHHHHHHHhh
Confidence            24589999999999999999998876

>cd00880 Era_like Era (E

Probab=99.85  E-value=3e-20  Score=129.39  Aligned_cols=151  Identities=21%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             EECCCCCCHHHHHHHHhcCCCC-C-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc-------cCcCCCcEE
Q 029177           12 TVGDGAVGKTCMLISYTSNTFP-T-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   82 (197)
Q Consensus        12 vvG~~~~GKstli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~~   82 (197)
                      ++|++|+|||||++++.+.... . ...+++............ ...+.+||+||...+.....       .+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986443 2 222233333333333331 36788999999877654433       367889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH--HHHHHHHcCCcEEEEec
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ--GEELKKLIGAAVYIECS  160 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S  160 (197)
                      ++++|.++..+.... . +......  .+.|+++|+||+|+.....          .....  ...........+++++|
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence            999999999887776 2 3333332  3799999999999976432          11110  11222333445899999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 029177          161 SKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~  177 (197)
                      |+++.|++++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=5.2e-20  Score=136.59  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--------ccc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRP   73 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~   73 (197)
                      ..+.--|+++|.||||||||+|++.+.+..  .....|+.......+..+  ...+.|+||||--.-..        ...
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            345678999999999999999999997653  222233333333333334  46788999999532221        123


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ..+..+|+++||+|+++.....+  ...++.++.  .+.|++++.||.|...+..          ........+......
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f  146 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF  146 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence            34689999999999998766544  345566665  3689999999999877543          123344445555666


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ...+++||++|.|++.+.+.+...+...
T Consensus       147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         147 KEIVPISALKGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             ceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence            6899999999999999999999887544

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=3.1e-23  Score=142.62  Aligned_cols=169  Identities=27%  Similarity=0.436  Sum_probs=141.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-EEECCe-EEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      .+..+|++|+|.-|+|||+++.+++...|...|..++...+... ...+++ .+.+++||++||++|-.+..-+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            34578999999999999999999999988888888885444433 334443 3688999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .++|||+++..+|+.. ..|.+.+....     ..+|+++.+||||......         .-......++++++|....
T Consensus       102 ~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gw  171 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGW  171 (229)
T ss_pred             eEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccce
Confidence            9999999999999999 88998887765     2567899999999977543         1234677889999999999


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +++|++.+.+++|+-..++..++...
T Consensus       172 tets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  172 TETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             eeeccccccChhHHHHHHHHHHHhhc
Confidence            99999999999999999999876554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=3e-20  Score=149.24  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=101.3

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVV   49 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~   49 (197)
                      |++...++|+++|++++|||||+++|+..  .....                              ...++.+.....  
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--   78 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--   78 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--
Confidence            45667899999999999999999999842  11100                              111222222222  


Q ss_pred             ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      ++...+.+.+|||||+++|.......+..+|++++|+|++++..+......++..+... ...|+++++||+|+.+....
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~  157 (425)
T PRK12317         79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK  157 (425)
T ss_pred             EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH
Confidence            33334788999999999887655556789999999999987322211111222222222 22469999999999652110


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHHH
Q 029177          130 LINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  171 (197)
                            ......++..++....+.    .+++++||++|+|+++..
T Consensus       158 ------~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        158 ------RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             ------HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                  000123455566655553    479999999999998743

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=1.2e-19  Score=153.51  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----------cC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------LS   75 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----------~~   75 (197)
                      .++|+++|.||+|||||+|++.+.... .++..++.+.....+..++  ..+++||+||+.++.....          .+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            478999999999999999999986442 3444444444444444444  6788999999987754211          12


Q ss_pred             --cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           76 --YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        76 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                        ...+|++++|+|.++.+.-.    ++...+.+.  ++|+++++||+|+.+.+.          + ..+..++.+.++.
T Consensus        81 l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~  143 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC  143 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence              24789999999999865432    233344443  799999999999875432          3 3456778888887


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHH
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                       |++++||.+++|++++.+.+.+..
T Consensus       144 -pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        144 -PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             -CEEEEEeecCCCHHHHHHHHHHhh
Confidence             899999999999999999998765

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=6.1e-21  Score=126.11  Aligned_cols=161  Identities=15%  Similarity=0.160  Sum_probs=122.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +++..+|+++|..|+||||+..++.-+... ...|+......   .+..++..+++||..|+...+..|+.++.+.|++|
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            347789999999999999999888776543 33444433222   23346689999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH----HHHHcCCcEEEE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE----LKKLIGAAVYIE  158 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  158 (197)
                      +|+|.+|+..+......+...+.+.. .+..+++++||.|.....            ...++..    -.-+...+.+|+
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~  158 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVK  158 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEe
Confidence            99999999988777666766666554 567788999999987642            2222111    112223468999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +||.+|+|+++..+|+.+.+..
T Consensus       159 tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccccCCcHHHHHHHHHHhc
Confidence            9999999999999999987643

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=3.5e-20  Score=144.92  Aligned_cols=152  Identities=24%  Similarity=0.296  Sum_probs=116.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   76 (197)
                      -+|++++|.||||||||+|.|.+.  ....+..+|+.+.....+.++|  +.+.+.||+|.++..+..        ...+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            489999999999999999999984  4566777888899999999999  788899999987655432        2246


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+.....               ...+ +.....+.
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~-~~~~~~~~  353 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESE-KLANGDAI  353 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchh-hccCCCce
Confidence            789999999999997444443  1112   2234789999999999976432               1111 22222368


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +.+|+++++|++.+.++|.+.+...
T Consensus       354 i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         354 ISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEEEecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999999999988766

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=5.3e-20  Score=143.60  Aligned_cols=151  Identities=19%  Similarity=0.193  Sum_probs=116.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc---------cccccCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY   76 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~   76 (197)
                      -.|+++|.||||||||.|||.+.+.  ..++.+++.+.......+.+.  .|.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            4799999999999999999999644  667777887877777778874  47899999976433         1233456


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ..||+++||+|....-+-.+  ....+.++..  +.|+++|+||+|-..               .+....-...+|.-..
T Consensus        82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~~--~kpviLvvNK~D~~~---------------~e~~~~efyslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPAD--EEIAKILRRS--KKPVILVVNKIDNLK---------------AEELAYEFYSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEEcccCch---------------hhhhHHHHHhcCCCCc
Confidence            89999999999988666555  3455566632  699999999999853               2223334445666689


Q ss_pred             EEecccCCCCHHHHHHHHHHHHc
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +.+||.+|.|+.+++++++..+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999999873

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=4.2e-20  Score=121.86  Aligned_cols=161  Identities=23%  Similarity=0.263  Sum_probs=118.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+.+||+++|..++|||||+.+|.+.... ...||.+.. ...+..+ .++.+.+||++|+...+..|..++.+.|++|
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            457899999999999999999999876432 222332221 2333333 3489999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH--HH-HHcCCcEEEEe
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE--LK-KLIGAAVYIEC  159 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~  159 (197)
                      +|+|.+|+..|++....+...+.... ..+|+.|.+||.|+...-.           ..+.+..  ++ -+...+++-++
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-----------~eeia~klnl~~lrdRswhIq~c  159 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-----------VEEIALKLNLAGLRDRSWHIQEC  159 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-----------hHHHHHhcchhhhhhceEEeeeC
Confidence            99999999999988777766665544 6899999999999865321           1111111  11 11223456689


Q ss_pred             cccCCCCHHHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ||.+++|+..-.+|+....
T Consensus       160 sals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  160 SALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             ccccccCccCcchhhhcCC
Confidence            9999999999999987643

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=4.5e-20  Score=148.25  Aligned_cols=160  Identities=13%  Similarity=0.072  Sum_probs=103.4

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------------CCCceeeeeeEEE
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVFDNFSANV   48 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~------------------------------~~~~~~~~~~~~~   48 (197)
                      |-.+...++|+++|+.++|||||+.+|+.  +.....                              ....+.+..... 
T Consensus         1 ~~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~-   79 (426)
T TIGR00483         1 MAKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK-   79 (426)
T ss_pred             CCCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE-
Confidence            34556689999999999999999999985  222110                              001111221222 


Q ss_pred             EECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           49 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        49 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                       +....+.+.+||+||+++|.......+..+|++++|+|+++.++..... ..+.... ......|+++++||+|+.+..
T Consensus        80 -~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~  157 (426)
T TIGR00483        80 -FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYD  157 (426)
T ss_pred             -EccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCcc
Confidence             3333478899999999988766666678999999999999985432110 1111122 222345799999999996421


Q ss_pred             hhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHH
Q 029177          128 QYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKT  169 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  169 (197)
                      .      .......+++.++++..+.    .+++++||++|+|+.+
T Consensus       158 ~------~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       158 E------EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             H------HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            1      0000223556667776653    5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=3.4e-19  Score=139.07  Aligned_cols=157  Identities=23%  Similarity=0.248  Sum_probs=118.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------c
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------R   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~   72 (197)
                      ..+||+++|.||+|||||+|++++.  .......+|+.+.....+..+++  .+.++||+|..+-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            4799999999999999999999984  34556667777888888888885  4559999996543322           1


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH----HHHHHH
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA----QGEELK  148 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~  148 (197)
                      ...+..+|++++|+|++.+-+-.+.  +....+.+.  +.+++||+||.|+.+...          ...+    +.....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l  320 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL  320 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence            2235789999999999998887774  555555554  789999999999977432          2222    333344


Q ss_pred             HHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          149 KLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ...+..|.+.+||+++.+++++|+.+....
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence            444566899999999999999999988754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=1.9e-19  Score=133.73  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=109.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--------C-----CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFP--------T-----DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~--------~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   71 (197)
                      +|+++|++|+|||||+++|+...-.        .     ++.+..    .+.......+......+.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863110        0     000000    0111111222233478889999999999888


Q ss_pred             cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--------c-C------CC--
Q 029177           72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--------I-N------HP--  134 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~-~------~~--  134 (197)
                      +...++.+|++++|+|+++......  ..+...+...  ++|+++++||+|+.......        . .      .+  
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            8888999999999999998755433  3444455443  78999999999987532110        0 0      00  


Q ss_pred             ------------------------------CCCCccHHHHH----HHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          135 ------------------------------GATPITTAQGE----ELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       135 ------------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                                                    +...++.++..    ........+|++..||.++.|++.+++.+...+..
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~  236 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT  236 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence                                          00012222222    22223456789999999999999999999987743

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.82  E-value=1.1e-19  Score=134.69  Aligned_cols=173  Identities=14%  Similarity=0.152  Sum_probs=110.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc------------ccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------------RLR   72 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~   72 (197)
                      .+.++|+|||.||+|||||.|.+.+.+...-......+.....-.+......+.|+||||.-.-.            ...
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            46899999999999999999999998775554444333333333333344788899999943211            112


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-----cCCCCCCCc-cHHHHHH
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-----INHPGATPI-TTAQGEE  146 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~-~~~~~~~  146 (197)
                      ...+..||.+++++|+++....-.  .+.+..+..+ .++|-++|.||.|........     ...++.... ..+-...
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            234578999999999997444333  3445555554 378999999999987654322     111111111 1111111


Q ss_pred             HHH---------HcC---CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          147 LKK---------LIG---AAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       147 ~~~---------~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +..         ..|   .-.+|.+||++|+|++++-++++..+..
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            111         111   2237889999999999999999987643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.82  E-value=3.3e-20  Score=147.52  Aligned_cols=170  Identities=26%  Similarity=0.401  Sum_probs=130.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+.+||+++|+.|+||||||-.+....|+++-++.. +.+.....+....+...+.|++..++-+.....-++.||++.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3467999999999999999999999999977755543 222222223333356789999876665555566789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH-HHHHHHHcCC-cEEEE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ-GEELKKLIGA-AVYIE  158 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~  158 (197)
                      ++|+.+++++++.+..+|+..+++..   .++|+|+||||+|......          .+.+. ..-+..++.. -.+++
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie  154 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE  154 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence            99999999999999999999999988   6899999999999987653          22222 3333333332 24799


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      |||++..++.++|....++++.+-.+
T Consensus       155 cSA~~~~n~~e~fYyaqKaVihPt~P  180 (625)
T KOG1707|consen  155 CSALTLANVSELFYYAQKAVIHPTSP  180 (625)
T ss_pred             hhhhhhhhhHhhhhhhhheeeccCcc
Confidence            99999999999999999988766554

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=6.8e-19  Score=145.37  Aligned_cols=164  Identities=13%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCC------------Cce-eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   70 (197)
                      +.-+|+++|+.++|||||+++|+.  +.+...+.            .+. .+.......+....+.+.+|||||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            346899999999999999999997  44432211            011 222233334444558899999999999999


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .+..+++.+|++++|+|+++.......  .++..+..  .++|.++++||+|+...+.         ....++..++...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            889999999999999999886443332  22233333  2789999999999875321         0111223333211


Q ss_pred             c------CCcEEEEecccCCC----------CHHHHHHHHHHHHcCCC
Q 029177          151 I------GAAVYIECSSKTQQ----------NVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       151 ~------~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  182 (197)
                      .      ..+|++.+||.+|.          |+..+++.|+..+..+.
T Consensus       151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            1      12479999999998          68999999999886554

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.82  E-value=9.9e-20  Score=122.92  Aligned_cols=136  Identities=21%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc----CcccccccCcCCCcEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~   84 (197)
                      ||+++|+.|+|||||+++|.+...  .+..|..      +.+.+     .++||||.-    .+....-....+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999988654  2222221      11222     368999952    222222233468999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      +.|++++.+...-  .+...+     +.|+|-|+||+|+..+.           ...+.+.++.+.-|....|++|+.+|
T Consensus        70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            9999998654331  222222     57999999999998432           45678888999999988999999999


Q ss_pred             CCHHHHHHHHH
Q 029177          165 QNVKTVFDAAI  175 (197)
Q Consensus       165 ~~i~~~~~~i~  175 (197)
                      +|++++.+.|.
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=4.5e-19  Score=124.83  Aligned_cols=154  Identities=16%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCc----------ccccccCc-
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY----------NRLRPLSY-   76 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~-   76 (197)
                      .|+++|++|+|||||++.+.++.+.....++.. +........++   .+++||+||....          ......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996555444433331 11122222233   7889999995332          22222222 


Q ss_pred             --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-HcCC
Q 029177           77 --RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-LIGA  153 (197)
Q Consensus        77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (197)
                        .+++++++++|.++..+....  .....+...  +.|+++++||+|+.....        ............+ ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~  145 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID  145 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence              356788999999876433221  222333332  589999999999854221        0011122222222 3455


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHH
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .+++++||+++.|++++++++.+.
T Consensus       146 ~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         146 PPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHh
Confidence            689999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=2.4e-19  Score=131.51  Aligned_cols=112  Identities=20%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC-----------CCce-------eee--eeEEEEE---CCeEEEEEEEecCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----------VPTV-------FDN--FSANVVV---DGSTVNLGLWDTAGQ   65 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~-----------~~~~-------~~~--~~~~~~~---~~~~~~~~~~D~~g~   65 (197)
                      +|+++|+.|+|||||+++|+........           ..+.       .+.  ....+..   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875432210           0000       000  0111111   345688999999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      .+|.......+..+|++++|+|+++..+...  ..+......  .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9998777788899999999999988776654  334344333  268999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=8.7e-19  Score=145.42  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=104.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc---CCCCCCCC-CceeeeeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTS---NTFPTDYV-PTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      -|+++|+.++|||||+++|.+   +.+.++.. ..+.+.....+.. ++  ..+.|||+|||++|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            588999999999999999986   33333322 2222211122222 33  35789999999998776666788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--CcEEEEec
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECS  160 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S  160 (197)
                      +|+|+++...-...  ..+..+...  ++| +++|+||+|+.+....        ....++..++....+  ..+++++|
T Consensus        80 LVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~~--------~~v~~ei~~~l~~~~~~~~~ii~VS  147 (614)
T PRK10512         80 LVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEARI--------AEVRRQVKAVLREYGFAEAKLFVTA  147 (614)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHHH--------HHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            99999874322221  122233322  455 5799999999753220        012244455555444  25899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~  180 (197)
                      |++|+|++++++.|.+....
T Consensus       148 A~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        148 ATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCCCHHHHHHHHHhhcc
Confidence            99999999999999876543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=3.4e-19  Score=147.19  Aligned_cols=160  Identities=15%  Similarity=0.139  Sum_probs=109.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCCCCCC-------------ceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS--NTFPTDYVP-------------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP   73 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   73 (197)
                      +|+++|+.++|||||+++|+.  +.+......             ...+.......+....+.+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            699999999999999999986  333221100             00111222222333347888999999999988888


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----  149 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (197)
                      ..++.+|++++|+|+++......  ..|+..+...  ++|+++++||+|+.+.+.         ....++...+..    
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA  149 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence            89999999999999987543222  3444444443  789999999999865321         011233333332    


Q ss_pred             ---HcCCcEEEEecccCCC----------CHHHHHHHHHHHHcCCC
Q 029177          150 ---LIGAAVYIECSSKTQQ----------NVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       150 ---~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  182 (197)
                         +.. .|++.+||++|.          |+..+|+.+.+.+..+.
T Consensus       150 ~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       150 DDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             cccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence               223 479999999995          89999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=4.1e-19  Score=129.81  Aligned_cols=151  Identities=17%  Similarity=0.102  Sum_probs=93.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEEEECCeEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDGSTVN   56 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   56 (197)
                      ||+++|++|+|||||+++|+..  .....                              ...++.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            6899999999999999999752  21100                              01111111122222333  56


Q ss_pred             EEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCC
Q 029177           57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGA  136 (197)
Q Consensus        57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  136 (197)
                      +.+|||||+++|.......+..+|++++|+|+++...-...  .....+... ...++++|+||+|+......      .
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~  149 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------V  149 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------H
Confidence            77999999988866666678899999999999876432222  112222222 12457889999998642110      0


Q ss_pred             CCccHHHHHHHHHHcCC--cEEEEecccCCCCHHHH
Q 029177          137 TPITTAQGEELKKLIGA--AVYIECSSKTQQNVKTV  170 (197)
Q Consensus       137 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  170 (197)
                      ......+..++...++.  .+++.+||++|+|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            00122345556666663  35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=1e-18  Score=144.27  Aligned_cols=165  Identities=19%  Similarity=0.220  Sum_probs=101.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE------CCeEE----------EEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV------DGSTV----------NLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~----------~~~~~D~~g~~~~   68 (197)
                      +.-.|+++|++++|||||+++|.+........+........ .+..      .+...          .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            44579999999999999999998765433333221111100 0000      01111          1679999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCC-----cc
Q 029177           69 NRLRPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATP-----IT  140 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~  140 (197)
                      ..++...+..+|++++|+|+++   +.+++.+ .    .+..  .++|+++++||+|+...-...........     ..
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9888888889999999999998   5555554 2    2222  37899999999998521000000000000     00


Q ss_pred             -HH-------HH-HHHH-------------HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          141 -TA-------QG-EELK-------------KLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       141 -~~-------~~-~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                       .+       +. ..+.             ...+..+++++||++|+|+++++..+...
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence             00       00 1111             11234689999999999999999888653

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=7.7e-19  Score=140.06  Aligned_cols=167  Identities=16%  Similarity=0.079  Sum_probs=103.1

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCce-eeee-----------------eEEEEEC--C----eE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTF---PTD-YVPTV-FDNF-----------------SANVVVD--G----ST   54 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~---~~~-~~~~~-~~~~-----------------~~~~~~~--~----~~   54 (197)
                      .....++|+++|+.++|||||+.+|.+.-.   .++ ....+ ...+                 ......+  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            345579999999999999999999965311   111 01111 1100                 0000001  1    12


Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH  133 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  133 (197)
                      ..+.+||+||+++|..........+|++++|+|++++. ..... ..+ ..+... ...|+++|+||+|+.+...     
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~-----  156 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHL-MALDII-GIKNIVIVQNKIDLVSKER-----  156 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHc-CCCcEEEEEEeeccccchh-----
Confidence            57889999999988765555566789999999999653 22221 111 222221 2247899999999975321     


Q ss_pred             CCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          134 PGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                         .....++...+...+  ...+++++||++++|++++++.|...+..
T Consensus       157 ---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 ---ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ---HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence               001123344444432  23489999999999999999999987644

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=1.6e-18  Score=125.03  Aligned_cols=148  Identities=19%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC--------C---CC------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF--------P---TD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~--------~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      .++|+++|+.++|||||+++|+....        .   -+      ....+..  .....++.....+.++||||+.+|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEE--eeeeEecCCCeEEEEEECcCHHHHH
Confidence            47999999999999999999985310        0   00      1111111  1122233334577899999998887


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ......+..+|++++|+|++....-..  ...+..+...  ++| ++++.||+|+.....       ......+++..+.
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l  148 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHH
Confidence            766777889999999999987543333  2233344433  566 778999999863221       0001223455555


Q ss_pred             HHcCC----cEEEEecccCCCCH
Q 029177          149 KLIGA----AVYIECSSKTQQNV  167 (197)
Q Consensus       149 ~~~~~----~~~~~~Sa~~~~~i  167 (197)
                      ...+.    ++++.+||++|.++
T Consensus       149 ~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         149 SKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHhcccccCCeEEEeeCccccCC
Confidence            55543    68999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=6.9e-19  Score=140.36  Aligned_cols=165  Identities=16%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC---CCC-CCce-eeeee-------------EEEEE----CC------eEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP---TDY-VPTV-FDNFS-------------ANVVV----DG------STVN   56 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~---~~~-~~~~-~~~~~-------------~~~~~----~~------~~~~   56 (197)
                      +..++|+++|++++|||||+++|.+....   ++. ...+ ...+.             ..+..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            35689999999999999999999653211   110 0011 00000             00001    11      1357


Q ss_pred             EEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC
Q 029177           57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG  135 (197)
Q Consensus        57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  135 (197)
                      +.+||+|||++|...+...+..+|++++|+|+++.. .....  ..+..+... ...|+++++||+|+.+....      
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~--e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~------  152 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK--EHLMALEII-GIKNIVIVQNKIDLVSKEKA------  152 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--HHHHHHHHc-CCCeEEEEEEccccCCHHHH------
Confidence            889999999999877777778899999999999643 11111  112222221 23478999999999753210      


Q ss_pred             CCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          136 ATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                        ....++..++....  ...+++++||++|+|++++++++...+..
T Consensus       153 --~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       153 --LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             --HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence              01123334444433  13489999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.80  E-value=3.7e-18  Score=125.72  Aligned_cols=154  Identities=16%  Similarity=0.110  Sum_probs=97.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--------------e-----ee--e------------------EEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------------D-----NF--S------------------ANVV   49 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~--------------~-----~~--~------------------~~~~   49 (197)
                      ||+++|+.++|||||+.+|..+.+.........              .     .+  .                  ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997665332110000              0     00  0                  0011


Q ss_pred             ECCeEEEEEEEecCCCcCcccccccCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           50 VDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                      ..  ...+.+.|+||+++|.......+  ..+|++++|+|+.....-..  ..++..+...  ++|+++|.||+|+....
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence            11  25678999999998865544444  36899999999887654333  3444555544  68999999999986532


Q ss_pred             hhhcCCCCCCCccHHHHHHHHH-------------------------HcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          128 QYLINHPGATPITTAQGEELKK-------------------------LIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      ...        ...++..++..                         ....+|+|.+||.+|+|++++...|..
T Consensus       155 ~~~--------~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 ILQ--------ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHH--------HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            200        11111111211                         112458999999999999999877754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.3e-18  Score=128.04  Aligned_cols=151  Identities=15%  Similarity=0.045  Sum_probs=91.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCC------------------------C------CCCceeeeeeEEEEECCeEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN--TFPT------------------------D------YVPTVFDNFSANVVVDGSTVN   56 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~--~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~   56 (197)
                      +|+++|+.++|||||+.+|+..  ....                        +      ...++.+.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            4899999999999999998641  1100                        0      01111121222333444  67


Q ss_pred             EEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-------SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      +.+||+||+.+|...+...++.+|++++|+|+++..       ..... ..+ .... .....|+++++||+|+......
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEcccccccccc
Confidence            889999999887766666678899999999999852       11121 222 2222 2224689999999999731000


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHH
Q 029177          130 LINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVK  168 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  168 (197)
                          ........++...+....+.    .+++.+||++|+|++
T Consensus       156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                00000111233334444443    579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=6.6e-18  Score=134.28  Aligned_cols=163  Identities=18%  Similarity=0.145  Sum_probs=105.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC------------C----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP------------T----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~------------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ...++|+++|+.++|||||+++|++....            +    + ....+.+.  ....++.....+.++|+|||++
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence            35789999999999999999999862110            0    0 11111111  1223333345778999999998


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+..+|++++|+|+++.......  ..+..+...  ++| +++++||+|+.++...       .....++..+
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~-------~~~i~~~i~~  156 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEEL-------LELVEMEVRE  156 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHH-------HHHHHHHHHH
Confidence            876666667889999999999875333332  222333333  678 6788999999743210       0012235556


Q ss_pred             HHHHcCC----cEEEEecccCCC--------CHHHHHHHHHHHHcC
Q 029177          147 LKKLIGA----AVYIECSSKTQQ--------NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       147 ~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~  180 (197)
                      +....+.    .+++.+||++|.        ++.++++.+.+.+..
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            6555553    589999999983        678888888877653

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=123.78  Aligned_cols=155  Identities=18%  Similarity=0.227  Sum_probs=112.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-------ccCcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGA   79 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~   79 (197)
                      -.+.+||-||+|||||++.++..+ -...|..|+..+.-..+..++. ..+.+-|+||...-.++.       ...++.|
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            358899999999999999999843 3456777765444444445543 348899999965433322       2235789


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           80 DVFLLAFSLISK---ASYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        80 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +.++||+|++..   +-++.+ +.+...+..+   ..+.|.+||+||+|+.+..             .....++++.+..
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN  341 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence            999999999998   555555 3333444333   3678999999999996432             2335788888887


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHH
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ..++++||++++|+.++++.+.+.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhhc
Confidence            679999999999999999988653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.1e-17  Score=133.02  Aligned_cols=149  Identities=18%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCC-------C-----CC----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNT-------F-----PT----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~-------~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      +...++|+++|+.++|||||+++|++..       +     .+    + ....+.+  ...+.++.....+.+||+|||+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            3457899999999999999999997420       0     00    0 0111112  1223344444678899999999


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      +|.......+..+|++++|+|+++.......  ..+..+...  ++|.+ +++||+|+.+....       .....++..
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~~~~~i~  155 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHH-------HHHHHHHHH
Confidence            8876655566788999999999874333322  222333332  57765 68999999753220       001234566


Q ss_pred             HHHHHcCC----cEEEEecccCCC
Q 029177          146 ELKKLIGA----AVYIECSSKTQQ  165 (197)
Q Consensus       146 ~~~~~~~~----~~~~~~Sa~~~~  165 (197)
                      .+...++.    .+++.+||.++.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            67776653    589999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=2.1e-17  Score=131.43  Aligned_cols=162  Identities=17%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC-------CC-----CC----C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN-------TF-----PT----D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~-------~~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ...++|+++|++++|||||+++|++.       .+     .+    + ....+.+.  ....++.....+.|+||||+.+
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence            45789999999999999999999862       10     00    0 11111111  1222333335678999999988


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+..+|++++|+|+.+.......  .++..+...  ++|.+ +++||+|+.++..       ......+++..
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~  156 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence            876666677899999999999875433322  233333332  67865 5799999964321       00122345666


Q ss_pred             HHHHcCC----cEEEEecccCCC----------CHHHHHHHHHHHHc
Q 029177          147 LKKLIGA----AVYIECSSKTQQ----------NVKTVFDAAIKVVL  179 (197)
Q Consensus       147 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  179 (197)
                      +...++.    .+++++||.++.          ++.++++.+.+.+.
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            6666643    589999999984          67888888877654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.6e-17  Score=134.08  Aligned_cols=156  Identities=15%  Similarity=0.197  Sum_probs=119.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-------ccCc-C
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSY-R   77 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~-~   77 (197)
                      ..+|+++|.||||||||.|++++.+ ...++.+.+.+..+..+...+..  +++.|.||........       +..+ .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3579999999999999999999954 45677788888888888888854  6799999976544321       1123 4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ..|+++-|+|++|.+.--.+    .-++.+.  +.|++++.|++|..+...           ..-+...+.+.+|. |++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv  142 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV  142 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence            57999999999997654333    1222222  789999999999987653           33455788999997 999


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++||++|+|++++...+.+....+.
T Consensus       143 ~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         143 PTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEeecCCCHHHHHHHHHHhccccc
Confidence            9999999999999999988665544

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.76  E-value=2.4e-17  Score=119.53  Aligned_cols=171  Identities=11%  Similarity=0.113  Sum_probs=99.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee---eeeEEEEECCeEEEEEEEecCCCcCcccc-----cccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD---NFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~   78 (197)
                      ++||+++|.+|+|||||+|.+.+.........+...   ..............+.+||+||.......     ....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986543322221110   00000001111236789999997543221     1223667


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC--CCCccH---HHHHHHHHH--c
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG--ATPITT---AQGEELKKL--I  151 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~--~  151 (197)
                      +|+++++.+  ++  +......|+..+...  +.|+++|+||+|+............  ...+..   +...+....  .
T Consensus        81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            898888743  22  333324566666665  6899999999999643221000000  000111   111222222  2


Q ss_pred             CCcEEEEeccc--CCCCHHHHHHHHHHHHcCCCC
Q 029177          152 GAAVYIECSSK--TQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       152 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ..+++|.+|+.  .+.++..+.+.++..+...++
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            34578999998  579999999999988865543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.2e-18  Score=115.93  Aligned_cols=157  Identities=18%  Similarity=0.241  Sum_probs=116.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.=|++++|..|+|||||+++|.+++. ..+.||. .+.+..+.+.+  +.++.+|.+||...+..|..++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl-HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL-HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCc-CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            445899999999999999999999876 3445553 12234455677  8889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH------HHHHcC------
Q 029177           86 FSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE------LKKLIG------  152 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------  152 (197)
                      +|+.|.+.+.+.+..+...+... ..++|+++.+||+|....            .+.++.+.      ++-..+      
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a------------~se~~l~~~l~l~~~t~~~~~v~~~~  162 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA------------ASEDELRFHLGLSNFTTGKGKVNLTD  162 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc------------ccHHHHHHHHHHHHHhcccccccccC
Confidence            99999999988855554444433 268999999999999874            23332221      111111      


Q ss_pred             ----CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          153 ----AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       153 ----~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          ....|.||...+.|.-+.|.|+.+.+
T Consensus       163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence                12467799998888888888877653

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=5.2e-17  Score=129.76  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCC----------------CCC-CCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP----------------TDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      +...++|+++|++++|||||+++|++..-.                .+. ...+.+.  ....+......+.|.|+||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence            345799999999999999999999863110                000 1111111  112233333567799999998


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      +|.......+..+|++++|+|+.....-...  ..+..+...  ++| +|++.||+|+.+....       .....+++.
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~-------~~~~~~~l~  155 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEEL-------LELVELEVR  155 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHH-------HHHHHHHHH
Confidence            8876666667899999999999875433332  233334333  678 7789999999753320       001224555


Q ss_pred             HHHHHcCC----cEEEEecccCCCC
Q 029177          146 ELKKLIGA----AVYIECSSKTQQN  166 (197)
Q Consensus       146 ~~~~~~~~----~~~~~~Sa~~~~~  166 (197)
                      .+.+..+.    .+++.+||.+|++
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhccc
Confidence            66665553    6899999998863

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.74  E-value=4e-17  Score=119.82  Aligned_cols=112  Identities=16%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC--CCCCCC---------------CceeeeeeEEEEEC--------CeEEEEEEEecC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT--FPTDYV---------------PTVFDNFSANVVVD--------GSTVNLGLWDTA   63 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~--~~~~~~---------------~~~~~~~~~~~~~~--------~~~~~~~~~D~~   63 (197)
                      +|+++|+.++|||||+.+|+...  ......               ..+.......+.++        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999997532  111000               00000000112222        346889999999


Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      |+.+|.......++.+|++++|+|+++..+.... ..+.. ...  .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~-~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQ-ALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHH-HHH--cCCCEEEEEECCCcc
Confidence            9999998888899999999999999988766553 33332 222  268999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.74  E-value=5.9e-17  Score=132.38  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce----eeeeeEEEEECCeEEEEEEEecC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTA   63 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~   63 (197)
                      .+.-+|+|+|++++|||||+++|+.  +....               ++.+..    .+.......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3456899999999999999999974  21100               000000    01111112233334788899999


Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      |+.+|.......++.+|++++|+|+++......  ..+......  .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence            999998777778899999999999987643322  333344433  3799999999999865

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=4.7e-17  Score=122.83  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=77.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--CCCCCC-------CCce------------eeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN--TFPTDY-------VPTV------------FDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~--~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      +|+++|++|+|||||+++|+..  ......       ..++            .+.......++...+.+.+|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            6999999999999999999852  111000       0000            011112223344457889999999998


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |.......++.+|++++|+|+++......  ..+......  .++|+++++||+|+...
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            87766677889999999999987644322  233344333  37899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1.2e-16  Score=121.17  Aligned_cols=112  Identities=23%  Similarity=0.232  Sum_probs=76.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Cce--------------eeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYV-----PTV--------------FDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      +|+++|++|+|||||+++++...-.....     .++              .......+..++  +.+++|||||+.+|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            58999999999999999997532110000     000              001111223344  678899999998887


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      ..+...+..+|++++|+|+++....... ..| ..+...  ++|.++++||+|+...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~~--~~p~iivvNK~D~~~~  131 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADEA--GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEECCccCCC
Confidence            7777888999999999999987665443 333 233333  7899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=5.2e-16  Score=117.70  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=91.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc----
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR----   70 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----   70 (197)
                      -.++|+++|.+|+|||||+|+|++..+...          ..++. ...+...+..++..+.+++|||||..+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999999766433          22333 233344555677778999999999433211    


Q ss_pred             ----------------------ccccCcC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           71 ----------------------LRPLSYR--GADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        71 ----------------------~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                                            .+...+.  .+|+++++++.+... .-.+  ..++..+..   .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence                                  1112232  477888888876522 1222  233444443   689999999999965


Q ss_pred             chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177          126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ..+.        ......+.+.+..+++ ++|.+...
T Consensus       158 ~~e~--------~~~k~~i~~~l~~~~i-~~~~~~~~  185 (276)
T cd01850         158 PEEL--------KEFKQRIMEDIEEHNI-KIYKFPED  185 (276)
T ss_pred             HHHH--------HHHHHHHHHHHHHcCC-ceECCCCC
Confidence            3220        1344556677777776 67766554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK13351 elongation factor G; Reviewed

Probab=99.72  E-value=6.6e-17  Score=136.91  Aligned_cols=116  Identities=19%  Similarity=0.172  Sum_probs=82.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCC--C-----------CCC-------CCCceeeeeeEEEEECCeEEEEEEEecC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNT--F-----------PTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTA   63 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~--~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~   63 (197)
                      .++..+|+|+|+.|+|||||+++|+...  .           ..+       +..+... ....+..+  ...+++||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~-~~~~~~~~--~~~i~liDtP   81 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIES-AATSCDWD--NHRINLIDTP   81 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCccc-ceEEEEEC--CEEEEEEECC
Confidence            3456799999999999999999998521  0           000       0011110 01123333  3788899999


Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |+.+|...+..+++.+|++++|+|+++..+.... ..| ..+...  ++|+++++||+|+...
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            9999988888899999999999999988776654 444 333333  7899999999998854

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=4.5e-16  Score=123.86  Aligned_cols=161  Identities=17%  Similarity=0.162  Sum_probs=102.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC----------------CC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP----------------TD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ...++|+++|+.++|||||+++|++....                ++ ....+.+.  ....+......+.+.||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence            45789999999999999999999863110                00 11111111  1222333335677999999988


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+..+|++++|+|+.+......  ..++..+...  ++|.+ +++||+|+.+....       ......+...
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHHHHHHHHH
Confidence            87666667889999999999987544333  2333444433  68876 57999999643210       0011234444


Q ss_pred             HHHHcC----CcEEEEecccCCC----------CHHHHHHHHHHHH
Q 029177          147 LKKLIG----AAVYIECSSKTQQ----------NVKTVFDAAIKVV  178 (197)
Q Consensus       147 ~~~~~~----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~  178 (197)
                      +....+    ..+++.+||.++.          ++..++++|...+
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            444443    2589999999875          5677777777654

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=3.2e-16  Score=110.63  Aligned_cols=156  Identities=16%  Similarity=0.147  Sum_probs=101.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCC----------CcCccccccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~   74 (197)
                      ...-|+++|.+|||||||+|.|++..-......|. .+..-.-+.+++.   +.+.|.||          ++.+..+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            44579999999999999999999954211111121 1222222344553   67999999          2223333333


Q ss_pred             CcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           75 SYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        75 ~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +++   +..++++++|+...-...+.  .+++.+...  ++|+++++||+|......          . .......+...
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~~~l  164 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVAEEL  164 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHHHHh
Confidence            443   35688899999888776663  566666665  899999999999976532          1 11122222222


Q ss_pred             ----CCcE-EEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 ----GAAV-YIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 ----~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                          ...+ ++.+|+.++.|++++...|.+.+.
T Consensus       165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             cCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence                2211 778999999999999999988664

>COG2262 HflX GTPases [General function prediction only]

Probab=99.71  E-value=8.9e-16  Score=118.54  Aligned_cols=158  Identities=19%  Similarity=0.148  Sum_probs=112.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--c------cccCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--L------RPLSY   76 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~------~~~~~   76 (197)
                      ....|.++|-.|+|||||+|+|.+. .+..+...++.+.....+.+.+ ...+.+-||-|--+--.  +      +-.-.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            4568999999999999999999984 4445555666666677777764 24666899999543211  1      11123


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|.++.|+|++++...+.+ ......+.... .++|+++|.||+|+..+.               .......... +.
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-~~  332 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-PN  332 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-CC
Confidence            579999999999999666665 55555565543 579999999999985432               1122222222 25


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      .+.+||++|+|++.+...|...+...
T Consensus       333 ~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         333 PVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            88999999999999999999987644

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=1.5e-16  Score=120.26  Aligned_cols=111  Identities=15%  Similarity=0.113  Sum_probs=76.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCC-----------C------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS--NTFPT-----------D------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~--~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      +|+++|++|+|||||+++|+.  +....           +      ....+.......+..++  ..+.+|||||+.+|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999974  21100           0      00111111122333444  677899999998888


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      ..+...++.+|++++|+|+.+...-...  .....+...  ++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            8888889999999999999886543332  333344433  689999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=2.7e-16  Score=127.41  Aligned_cols=156  Identities=15%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCC--CCCCC----------CCc----------------------eeeeeeEEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPT----------------------VFDNFSANVV   49 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~----------~~~----------------------~~~~~~~~~~   49 (197)
                      ....++|+++|++++|||||+++|+...  .....          ..+                      +.+.....  
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~--  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY--  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence            3567999999999999999999997531  11100          000                      01111111  


Q ss_pred             ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      +......+.|+||||+++|.......+..+|++++|+|++....-... ..+ ..+... ...|+++++||+|+......
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL-GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh-CCCceEEEEEeeccccchhH
Confidence            222335778999999998865555557899999999999765322211 111 111111 12478999999999642210


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcC---CcEEEEecccCCCCHHHH
Q 029177          130 LINHPGATPITTAQGEELKKLIG---AAVYIECSSKTQQNVKTV  170 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  170 (197)
                            ......++...+....+   ..+++.+||++|+|+.+.
T Consensus       179 ------~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 ------VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ------HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence                  00011122333334433   358999999999999764

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=6.1e-16  Score=122.91  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=113.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++--|.++|+-.-|||||+..+-............+ .....++.++. ..-.+.|+|||||+.|..++..-.+-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            344688999999999999999988776555554443 33344555541 2346789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--------CCcE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--------GAAV  155 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  155 (197)
                      +|++++|.--.+..  .-++.++.  .++|+++++||+|..+.+             ++....-..++        +...
T Consensus        84 LVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v~  146 (509)
T COG0532          84 LVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDVI  146 (509)
T ss_pred             EEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCceE
Confidence            99999985433332  11233333  389999999999998632             22222222222        3357


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++++||++|+|+.+++..+.-.+..
T Consensus       147 ~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         147 FVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHHH
Confidence            8999999999999999998865543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.70  E-value=5.4e-16  Score=117.00  Aligned_cols=162  Identities=20%  Similarity=0.179  Sum_probs=112.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~~~   80 (197)
                      -|.+||.|++|||||++.++.. .-..+|..|+..+.--.+.+. ..-.|.+=|+||..+-.+.       ....++.+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            5789999999999999999984 335677777755444444442 2246789999996442221       222356889


Q ss_pred             EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           81 VFLLAFSLISKAS---YENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        81 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++++|+|++..+.   .++. ......+..+.   .+.|.+||+||+|+..+.+          ........+.+..+..
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE  308 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence            9999999987653   4444 55566666665   5789999999999755432          3333444555555543


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ..+.+||.+++|++++...+.+.+...+
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            3333999999999999999998776554

>PLN03127 Elongation factor Tu; Provisional

Probab=99.70  E-value=9e-16  Score=123.39  Aligned_cols=162  Identities=20%  Similarity=0.204  Sum_probs=99.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC------C----C------CCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN------T----F------PTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~------~----~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ...++|+++|+.++|||||+++|.+.      .    +      .++. ...+.+.  ....++.....+.|.||||+.+
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence            45789999999999999999999631      1    0      0000 1111221  2223333446778999999988


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+..+|++++|+|+++......  ...+..+...  ++| ++++.||+|+.+....       .....++..+
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~-------~~~i~~~i~~  205 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEEL-------LELVEMELRE  205 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHH-------HHHHHHHHHH
Confidence            76655555677999999999987543333  2233344433  688 4788999999753210       0011123334


Q ss_pred             HHHHcC----CcEEEEeccc---CCCC-------HHHHHHHHHHHHc
Q 029177          147 LKKLIG----AAVYIECSSK---TQQN-------VKTVFDAAIKVVL  179 (197)
Q Consensus       147 ~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~  179 (197)
                      +....+    .+|++.+|+.   ++.|       +.++++++.+.+.
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            443332    2578888876   4555       6788888877654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.70  E-value=3.5e-16  Score=125.87  Aligned_cols=159  Identities=14%  Similarity=0.072  Sum_probs=99.6

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC------------------------CCCCce----eeeeeEEEEECC
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV----FDNFSANVVVDG   52 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~------------------------~~~~~~----~~~~~~~~~~~~   52 (197)
                      .+...++|+++|+.++|||||+.+|+..  ....                        +..+..    .+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            3445789999999999999999988741  1100                        000000    000011122334


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCCCcc
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE-------NISKKWIPELRHYAPTVP-IVLVGTKQDLR  124 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~  124 (197)
                      ....+.++|+|||++|.......+..+|++++|+|+++. .++       .....| ..+..  .++| +++++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCC
Confidence            457888999999999998888889999999999999873 221       121222 22222  2564 78889999986


Q ss_pred             cchhhhcCCCCCCCccHHHHHHHHHHcC----CcEEEEecccCCCCHHH
Q 029177          125 EDKQYLINHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKT  169 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  169 (197)
                      ....    .........+++..+..+.+    ..+++++||.+|+|+.+
T Consensus       159 ~~~~----~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKY----SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhh----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            2110    00000012456677777766    25799999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=5.8e-16  Score=116.31  Aligned_cols=159  Identities=20%  Similarity=0.187  Sum_probs=112.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc-cccc--------cCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRP--------LSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~--------~~~   76 (197)
                      ...|+|.|.||||||||++.+++... ..+|..|+...+..++...+  ..+|++||||.-+-. ...+        .+-
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            35799999999999999999998544 45677777666666665555  788999999953211 1100        011


Q ss_pred             CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .-.++++|++|.+..-  +.+.. ..++..++..+. .|+++|.||.|..+..            ..+++......-+..
T Consensus       246 hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~~  311 (346)
T COG1084         246 HLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGGE  311 (346)
T ss_pred             HhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhccc
Confidence            3468899999998754  45666 556677777765 8999999999997543            223344445555554


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ....+++..+.+++.+-..+...+.+.
T Consensus       312 ~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         312 EPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             cccceeeeehhhHHHHHHHHHHHhhch
Confidence            577889999999998888888776554

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.69  E-value=5.2e-16  Score=124.92  Aligned_cols=159  Identities=15%  Similarity=0.063  Sum_probs=97.8

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------CCCCce----eeeeeEEEEE
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------DYVPTV----FDNFSANVVV   50 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~------------------------~~~~~~----~~~~~~~~~~   50 (197)
                      |-++...++|+++|+.++|||||+.+|+.  +....                        +..+..    .+.......+
T Consensus         1 ~~~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~   80 (446)
T PTZ00141          1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (446)
T ss_pred             CCCCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence            34556679999999999999999999875  21110                        000000    0000111223


Q ss_pred             CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCC-EEEEeeCCC
Q 029177           51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS-------YENISKKWIPELRHYAPTVP-IVLVGTKQD  122 (197)
Q Consensus        51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D  122 (197)
                      +.....+.|+|+|||.+|.......+..+|++++|+|++....       .... ..| ..+...  ++| ++++.||+|
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~-eh~-~~~~~~--gi~~iiv~vNKmD  156 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTR-EHA-LLAFTL--GVKQMIVCINKMD  156 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHH-HHH-HHHHHc--CCCeEEEEEEccc
Confidence            3344788899999999998777777899999999999987531       1111 222 233332  566 678999999


Q ss_pred             ccc--chhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHH
Q 029177          123 LRE--DKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKT  169 (197)
Q Consensus       123 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  169 (197)
                      ...  ..+      .......++..++....+.    ++++.+|+.+|+|+.+
T Consensus       157 ~~~~~~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        157 DKTVNYSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccchhhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            532  110      0000122344444444443    6899999999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.1e-16  Score=117.57  Aligned_cols=175  Identities=18%  Similarity=0.160  Sum_probs=115.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeee-eEEEEECCeEEEEEEEecCCCcC-------cccccccC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED-------YNRLRPLS   75 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~   75 (197)
                      ..+++|++.|..|+||||++|+|+.+...+- ..+...+.. .....+++  -.+.+||+||-.+       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            4679999999999999999999997544221 112211111 11122344  4677999999655       55566777


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-----cCCCCCCCccHHHHHHHHHH
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-----INHPGATPITTAQGEELKKL  150 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  150 (197)
                      +...|.++++.+..|+.---+. ..|.+.+.... +.|++++.|.+|...+-..+     .+++..+....+.+..+.+.
T Consensus       115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            8899999999999998765554 45555554432 47999999999988763221     12222222333333332222


Q ss_pred             c-CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          151 I-GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       151 ~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      . ...|++.+|...+.|++++...++..+....+
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            2 13478888899999999999999998865443

>PLN03126 Elongation factor Tu; Provisional

Probab=99.68  E-value=8.7e-16  Score=124.16  Aligned_cols=148  Identities=18%  Similarity=0.143  Sum_probs=94.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC------CCCC----------CC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN------TFPT----------DY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~------~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ...++|+++|++++|||||+++|+..      ....          +. ...+.+.....+..++  ..+.++|+|||++
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence            34789999999999999999999852      1111          00 0111111111222333  5778999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+..+|++++|+|+.+.......  .++..+...  ++| +++++||+|+......       .....++...
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~i~~~i~~  225 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LELVELEVRE  225 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHH-------HHHHHHHHHH
Confidence            877666667889999999999876544432  333344433  678 7789999999753220       0012234555


Q ss_pred             HHHHcC----CcEEEEecccCCC
Q 029177          147 LKKLIG----AAVYIECSSKTQQ  165 (197)
Q Consensus       147 ~~~~~~----~~~~~~~Sa~~~~  165 (197)
                      +....+    ..+++.+|+.++.
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccc
Confidence            555542    3589999998874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=3.7e-16  Score=124.68  Aligned_cols=151  Identities=16%  Similarity=0.103  Sum_probs=92.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC--CCCC-------------CC-------------------CCceeeeeeEEEEECCe
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN--TFPT-------------DY-------------------VPTVFDNFSANVVVDGS   53 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~--~~~~-------------~~-------------------~~~~~~~~~~~~~~~~~   53 (197)
                      +||+++|+.++|||||+.+|+..  ....             ..                   ...+.+.....+  ...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--STD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--ccC
Confidence            58999999999999999999742  1111             00                   000011111112  223


Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH  133 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  133 (197)
                      ...+.|+|+||+++|.......+..+|++++|+|+......... ..+ ..+... ...++++++||+|+......    
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~----  151 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE----  151 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH----
Confidence            35788999999998876666678899999999999865433322 122 122221 12468899999999642210    


Q ss_pred             CCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHHH
Q 029177          134 PGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKT  169 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  169 (197)
                        ......++...+.+..+.  .+++++||.+|+|+++
T Consensus       152 --~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 --VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             --HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              000112333344444443  4799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.68  E-value=7.8e-16  Score=113.06  Aligned_cols=166  Identities=19%  Similarity=0.278  Sum_probs=101.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeeeeEEEEECCeEEEEEEEecCCCcCccc-----ccccCcCCCcE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGADV   81 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~   81 (197)
                      ||+++|+.+|||||+.+-++.+-.+.+..  ..+.......+... ..+.+++||+||+..+-.     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999999875443322  11111112222222 236899999999976543     34556899999


Q ss_pred             EEEEEECCChhhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--CcEEE
Q 029177           82 FLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--AAVYI  157 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  157 (197)
                      +|+|+|+.+.+-.+++.  ...+..+.+..|+..+-++..|+|+..+..+.    ....-..+...+.+...+  ...++
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~~  155 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITFF  155 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEEE
Confidence            99999998554333330  34456666777999999999999986543200    000001122233333333  24678


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+|..+ +.+.+++..+++.+.-
T Consensus       156 ~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  156 LTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             EE-TTS-THHHHHHHHHHHTTST
T ss_pred             eccCcC-cHHHHHHHHHHHHHcc
Confidence            888877 7999999999998764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.68  E-value=1.4e-15  Score=124.44  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCC---------------CCCCce----eeeeeEEEEECCeEEEEEEEecC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT---------------DYVPTV----FDNFSANVVVDGSTVNLGLWDTA   63 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~---------------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~   63 (197)
                      .+..+|+|+|++++|||||+++|+.  +....               ++.+..    .+.......++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4566899999999999999999863  21110               000000    11111223344445788899999


Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      |+.+|.......++.+|++++|+|+++......  ..+......  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence            999888766667899999999999987532221  333444433  3789999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=7.6e-17  Score=113.65  Aligned_cols=113  Identities=17%  Similarity=0.209  Sum_probs=72.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE--E-CCeEEEEEEEecCCCcCcccccccC---cCCCcEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--V-DGSTVNLGLWDTAGQEDYNRLRPLS---YRGADVF   82 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~~   82 (197)
                      .|+++|+.|+|||+|..+|..+.......+.     .....  + ....-.+.++|+|||.+.+......   +..+.++
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            6899999999999999999998554333222     22221  1 2233467899999999887644333   7789999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 029177           83 LLAFSLIS-KASYENISKKWIPELRHYA---PTVPIVLVGTKQDLRED  126 (197)
Q Consensus        83 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~  126 (197)
                      |||+|.+. +..+.+..+++.+.+....   ..+|++|++||+|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 4455555355555554433   57999999999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=4.5e-15  Score=114.30  Aligned_cols=80  Identities=24%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEE---------------------ECC-eEEEEEEEecCCC-
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ-   65 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~-   65 (197)
                      |+++|.||||||||+++|++.... .++..++.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987542 2333333221111111                     122 3368999999997 


Q ss_pred             ---cCccccccc---CcCCCcEEEEEEECC
Q 029177           66 ---EDYNRLRPL---SYRGADVFLLAFSLI   89 (197)
Q Consensus        66 ---~~~~~~~~~---~~~~~~~~i~v~d~~   89 (197)
                         +.+..+...   .+++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334433334   378999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.66  E-value=1.3e-14  Score=108.80  Aligned_cols=152  Identities=22%  Similarity=0.235  Sum_probs=107.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc-------cccccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~   78 (197)
                      .-.+++||.|+||||||++.|++... ..+|..|+.......+.+++  ..+|+.|+||.-.-.       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            46899999999999999999998544 45677777777777777777  788999999853221       123345789


Q ss_pred             CcEEEEEEECCChhh-HHHHHHHHH----------------------------------------HHHhhh---------
Q 029177           79 ADVFLLAFSLISKAS-YENISKKWI----------------------------------------PELRHY---------  108 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~---------  108 (197)
                      ||.+++|+|+....+ .+-+...+.                                        ..++++         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986554 322211110                                        111111         


Q ss_pred             ----------------CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHH
Q 029177          109 ----------------APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD  172 (197)
Q Consensus       109 ----------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  172 (197)
                                      ..-+|.+.|.||.|+..               .+++..+.+..   ..+.+||..+.|++++.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e  282 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE  282 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence                            01238899999999843               34445555444   688999999999999999


Q ss_pred             HHHHHH
Q 029177          173 AAIKVV  178 (197)
Q Consensus       173 ~i~~~~  178 (197)
                      .|.+.+
T Consensus       283 ~i~~~L  288 (365)
T COG1163         283 RIWDVL  288 (365)
T ss_pred             HHHHhh
Confidence            999876

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=1.9e-15  Score=100.38  Aligned_cols=105  Identities=21%  Similarity=0.259  Sum_probs=70.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---------ccccCcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR   77 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~   77 (197)
                      +|+++|.+|+|||||+|+|++...  .....+++.......+..++.  .+.++||||...-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998533  223334443333344556774  446999999643211         1222247


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK  120 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  120 (197)
                      .+|++++|+|.+++.. +.. ..+++.++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            8999999999887433 222 34445553   47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.65  E-value=1.5e-15  Score=127.55  Aligned_cols=154  Identities=19%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC----------CCCce----------------------eeeeeEEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD----------YVPTV----------------------FDNFSANVVV   50 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~----------~~~~~----------------------~~~~~~~~~~   50 (197)
                      ...++|+++|++++|||||+++|+..  .....          ...++                      .+.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            45789999999999999999999863  21110          01110                      0011111222


Q ss_pred             CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177           51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL  130 (197)
Q Consensus        51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  130 (197)
                      ++  ..+.|+||||+++|.......+..+|++++|+|++....-... . ....+... ...|+++++||+|+.+...  
T Consensus       102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e-~~~~~~~~-~~~~iivvvNK~D~~~~~~--  174 (632)
T PRK05506        102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-R-HSFIASLL-GIRHVVLAVNKMDLVDYDQ--  174 (632)
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-H-HHHHHHHh-CCCeEEEEEEecccccchh--
Confidence            33  4677999999988765555567899999999999765432221 1 11122221 1357889999999964211  


Q ss_pred             cCCCCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHHH
Q 029177          131 INHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKT  169 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  169 (197)
                          ........+...+...++.  .+++.+||++|+|+.+
T Consensus       175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                0000111233344445553  4689999999999874

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.6e-15  Score=117.82  Aligned_cols=166  Identities=20%  Similarity=0.162  Sum_probs=117.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCC-------------C-CCCce-eeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-------------D-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ++.=++.||-+-.-|||||..+|+.  +....             + ..+.+ .......+..+++.+.+.++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3455799999999999999999986  21111             0 11111 111112222346779999999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      |.....+.+.-|+++++|+|++..-.....-..| ..+..   +..+|.|.||+|+...+.         .-...+..++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~-lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l  204 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFY-LAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL  204 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHH-HHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence            9999999999999999999999987777763333 33332   688999999999987432         0112233344


Q ss_pred             HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          148 KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      ....+. +++.+||++|.|+.+++++|++.+.-+.-.
T Consensus       205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            444454 799999999999999999999988665443

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.5e-15  Score=119.22  Aligned_cols=166  Identities=22%  Similarity=0.203  Sum_probs=110.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-c--------ccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-L--------RPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~--------~~~   74 (197)
                      ..++|+++|+||||||||+|.|.....  .....+|+.+-....+.++|  +.+.+.||+|-.+-.. .        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            458999999999999999999998533  44556677788888888999  7778999999766221 1        112


Q ss_pred             CcCCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCCcccchhhhcCCCCCC-CccHHHH
Q 029177           75 SYRGADVFLLAFSLISK--ASYENISKKWIPELRHYA-------PTVPIVLVGTKQDLREDKQYLINHPGAT-PITTAQG  144 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~  144 (197)
                      .+..+|++++|+|+...  ++-..+ ...+.......       ...|++++.||.|+..+-.     .... ++....+
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-----~~~~~~~~~~~~  418 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-----EMTKIPVVYPSA  418 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc-----cccCCceecccc
Confidence            35789999999999443  332332 33333333322       2379999999999976521     0000 0111111


Q ss_pred             HHHHHHc-CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          145 EELKKLI-GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       145 ~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                          ... ....+.++|+++++|++.+.+.+...+.....
T Consensus       419 ----~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  419 ----EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ----ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence                111 12245679999999999999999887654433

>PRK12739 elongation factor G; Reviewed

Probab=99.63  E-value=9.1e-15  Score=123.82  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC--CCC-----C------------CCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      ..+..+|+++|++++|||||+++|+..  ...     .            .....+.......+..++  ..+.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            346678999999999999999999752  110     0            011111122222334444  6778999999


Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +.+|...+...++.+|++++|+|+.+.......  ..+..+...  ++|+++++||+|+...
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            988877777788999999999999887554443  233334433  6899999999998753

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=9.5e-15  Score=123.73  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=81.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCC-----CC------------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP-----TD------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ++.-+|+|+|++++|||||+++|+.  +...     ..            ...++.......+..++  ..+.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence            4456899999999999999999974  1110     00            01111122223344444  67889999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .++...+...++.+|++++|+|+++....... ..| ..+...  ++|+++++||+|+..
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~-~~~~~~--~~p~ivviNK~D~~~  141 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVW-RQANRY--EVPRIAFVNKMDKTG  141 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence            98887778889999999999999987655543 333 334433  689999999999975

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.61  E-value=1e-13  Score=100.41  Aligned_cols=163  Identities=19%  Similarity=0.158  Sum_probs=100.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   73 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~   73 (197)
                      ++|+++|.+|+|||||+|.+++.......   .+.+.........+++  ..+.++||||-.+....           ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999986432221   1222222233334455  56789999996543210           11


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      ....++|++++|+++.+ .+-.+  ...++.+...+.   -.+++++.|+.|........  +..  .-.....+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~--~~~--~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLE--DYL--ENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHH--HHH--HhccHHHHHHHHH
Confidence            23467899999999887 33333  344455554432   25788999999976532100  000  0012455667777


Q ss_pred             cCCcEEEEec-----ccCCCCHHHHHHHHHHHHcC
Q 029177          151 IGAAVYIECS-----SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       151 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+. .++.++     +..+.++.++++.+.+.+..
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            665 454444     45678899999999887753

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.60  E-value=1.5e-14  Score=116.38  Aligned_cols=166  Identities=15%  Similarity=0.115  Sum_probs=102.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCC-Cce-eeeeeEE-----------E---EECC-------------
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYV-PTV-FDNFSAN-----------V---VVDG-------------   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~-~~~-~~~~~~~-----------~---~~~~-------------   52 (197)
                      ...++|.++|+-..|||||+..|.+-   ++.++.. ..+ ...|...           .   ..+.             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45689999999999999999999862   2222111 111 0000000           0   0000             


Q ss_pred             ---eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177           53 ---STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ  128 (197)
Q Consensus        53 ---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  128 (197)
                         ....+.|+|+|||++|.......+..+|++++|+|+++. ...... ..+ ..+... .-.|++++.||+|+.+...
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCHHH
Confidence               013678999999999877666667899999999999874 222222 222 222211 1246899999999975321


Q ss_pred             hhcCCCCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          129 YLINHPGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      .        ....++..++....  ...+++.+||++|+|++++++.|...+..+
T Consensus       189 ~--------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        189 A--------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             H--------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            0        01112333333221  245899999999999999999999766543

>PRK00007 elongation factor G; Reviewed

Probab=99.59  E-value=1.7e-14  Score=122.19  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCC-----C------------CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ++..+|+++|++++|||||+++|+.  +...     .            .....+.+.....+.+.+  ..+.++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            4567999999999999999999974  2110     0            011111222223344444  67889999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .+|.......++.+|++++|+|+.......+. ..| ..+...  ++|.++++||+|+.+
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~-~~~~~~--~~p~iv~vNK~D~~~  141 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVW-RQADKY--KVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHH-HHHHHc--CCCEEEEEECCCCCC
Confidence            88766666678899999999998877555543 333 334333  689999999999874

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=1.9e-14  Score=111.26  Aligned_cols=164  Identities=15%  Similarity=0.114  Sum_probs=100.7

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCC---------------C---------C----CCceeeeeeEEEEE
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPT---------------D---------Y----VPTVFDNFSANVVV   50 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~---------------~---------~----~~~~~~~~~~~~~~   50 (197)
                      |+.....++++++|+..+|||||+-+|+..  .++.               +         .    .....+.......+
T Consensus         1 ~~~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f   80 (428)
T COG5256           1 MASEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF   80 (428)
T ss_pred             CCCCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence            455667899999999999999999888752  2211               0         0    00001111122233


Q ss_pred             CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHH--H--HHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI--S--KKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +-..+.+++.|+|||.+|-...-.-.++||++|+|+|+.+.+.-...  .  .+-...+.+...-..+|++.||+|+.+-
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w  160 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW  160 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence            34447899999999999988888888999999999999887411110  0  0001111111122357889999999862


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV  170 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  170 (197)
                      ++      ........+...+.+..|.    ++|+++|+..|+|+.+.
T Consensus       161 de------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         161 DE------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             CH------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            21      0001122333445555553    46999999999998653

>PRK12740 elongation factor G; Reviewed

Probab=99.58  E-value=1.5e-14  Score=122.39  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=73.5

Q ss_pred             ECCCCCCHHHHHHHHhcC--CCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc
Q 029177           13 VGDGAVGKTCMLISYTSN--TFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP   73 (197)
Q Consensus        13 vG~~~~GKstli~~l~~~--~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   73 (197)
                      +|++++|||||+++|+..  ....           ++      ...+.......+...+  +.+.+|||||+.+|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999642  1100           00      0000111112333444  7888999999988877777


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      ..+..+|++++++|+++....... ..| ..+...  ++|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEKY--GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHHc--CCCEEEEEECCCCCCC
Confidence            788999999999999987665554 333 333332  7899999999998743

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=7e-14  Score=109.65  Aligned_cols=164  Identities=19%  Similarity=0.219  Sum_probs=115.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCC-------------C-CCC-cee-eeeeEEEEE-CCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPT-------------D-YVP-TVF-DNFSANVVV-DGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~-------------~-~~~-~~~-~~~~~~~~~-~~~~~~~~~~D~~g~   65 (197)
                      .+.=+..++-+-.-|||||..|++..  .+..             + ..+ |+. ......... ++++|.+.++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            34446889999999999999999862  2211             0 111 111 111111222 568899999999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE  145 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      -+|+-...+.+.-|-++++++|++..-....+...| ..+..   +.-++-|.||+||....            +..-.+
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Ad------------pervk~  150 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAAD------------PERVKQ  150 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCC------------HHHHHH
Confidence            999998888999999999999999987666663333 33333   67888899999998742            222334


Q ss_pred             HHHHHcCC--cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          146 ELKKLIGA--AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       146 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +..+-.|.  ...+.+||++|.|+++++++|++.+..+...
T Consensus       151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence            45555553  3468899999999999999999998766543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.2e-14  Score=101.52  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC---CCcEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFLL   84 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i~   84 (197)
                      =.|+++|+.++|||+|..+|..+.+.....+.  ..-.....+.+.  .+.++|.|||++.+.....+++   ++-+++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            36999999999999999999988543322222  112233334443  3779999999987765555554   7899999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhh------------------------cCCCCC
Q 029177           85 AFSLIS-KASYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYL------------------------INHPGA  136 (197)
Q Consensus        85 v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~------------------------~~~~~~  136 (197)
                      |+|..- .....+....+.+.+...   ...+|++|++||.|+.-.....                        ..+...
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            998754 334445535555555544   2578999999999987432110                        000000


Q ss_pred             CCccHHHHHH--HHHHc-CCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          137 TPITTAQGEE--LKKLI-GAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       137 ~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .....+++..  |.+-- ..+.|.+.|++++ +++++-+|+...
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            0111111111  22211 2346788999988 899999998764

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.57  E-value=1.3e-13  Score=110.40  Aligned_cols=163  Identities=23%  Similarity=0.308  Sum_probs=123.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+++.++|+.++|||.+++.|.++.+..++..++...+ ...+...++...+.+-|++-. ........- ..||++.
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            4689999999999999999999999999887766664444 445556677778888888765 222121112 6799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ++||.+++.+|... ....+.-... ..+|+++|++|+|+.+..+          ....+-.+++++++..+.+.+|.+.
T Consensus       501 ~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~~~  568 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISSKT  568 (625)
T ss_pred             EecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeeccCC
Confidence            99999999999998 3333322222 5899999999999987653          1222227899999998899999996


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~  182 (197)
                      ... .++|..|...+..+.
T Consensus       569 ~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  569 LSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCC-chHHHHHHHhhhCCC
Confidence            434 999999999998877

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=1.3e-13  Score=112.61  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             EEEEEecCCCcCc-----ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177           56 NLGLWDTAGQEDY-----NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL  130 (197)
Q Consensus        56 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  130 (197)
                      .+.|.||||-...     .......+..+|++++|+|.++..+..+  ..+...+.....+.|+++|+||+|+.+...  
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree--  306 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS--  306 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc--
Confidence            4568899996432     1123346889999999999988655555  245555655433469999999999854221  


Q ss_pred             cCCCCCCCccHHHHHHHHHH------cCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          131 INHPGATPITTAQGEELKKL------IGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                              ...+....+...      .....+|++||+.|.|++++++.+.+.
T Consensus       307 --------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 --------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             --------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                    123334444321      124468999999999999999999873

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.56  E-value=5e-14  Score=103.50  Aligned_cols=172  Identities=19%  Similarity=0.188  Sum_probs=98.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCC-------CCCce-eeeeeEEEEEC-------------------------
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTV-FDNFSANVVVD-------------------------   51 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~-------~~~~~-~~~~~~~~~~~-------------------------   51 (197)
                      .++.-|+++|..|+|||||++||........       -.|.. ...|...+.++                         
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            3567899999999999999999976322111       11111 12222222221                         


Q ss_pred             ----------------CeEEEEEEEecCCCc-CcccccccC-------cCCCcEEEEEEECCChh---hHHHHHHHHHHH
Q 029177           52 ----------------GSTVNLGLWDTAGQE-DYNRLRPLS-------YRGADVFLLAFSLISKA---SYENISKKWIPE  104 (197)
Q Consensus        52 ----------------~~~~~~~~~D~~g~~-~~~~~~~~~-------~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~  104 (197)
                                      .......++|||||. .|.+.....       ....-++++++|.....   +|-...-+--..
T Consensus        97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi  176 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI  176 (366)
T ss_pred             HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence                            123557799999985 444332222       12345777888864433   333321111223


Q ss_pred             HhhhCCCCCEEEEeeCCCcccchhhh------------c---CCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177          105 LRHYAPTVPIVLVGTKQDLREDKQYL------------I---NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT  169 (197)
Q Consensus       105 ~~~~~~~~p~iiv~nK~D~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  169 (197)
                      +.+  ..+|++++.||.|+.+..-..            +   .+.....+......-+..-|.....+-+||.+|+|.++
T Consensus       177 lyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd  254 (366)
T KOG1532|consen  177 LYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD  254 (366)
T ss_pred             HHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence            333  389999999999998764210            0   00111111222222333344556788999999999999


Q ss_pred             HHHHHHHHH
Q 029177          170 VFDAAIKVV  178 (197)
Q Consensus       170 ~~~~i~~~~  178 (197)
                      +|..+-+.+
T Consensus       255 f~~av~~~v  263 (366)
T KOG1532|consen  255 FFTAVDESV  263 (366)
T ss_pred             HHHHHHHHH
Confidence            999887655

>cd00066 G-alpha G protein alpha subunit

Probab=99.56  E-value=1.2e-13  Score=106.93  Aligned_cols=128  Identities=15%  Similarity=0.177  Sum_probs=87.7

Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCC
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYA-PTVPIVLVGTKQD  122 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  122 (197)
                      .+.+.+||++|+...+..|.+++.+++++++|+|+++.          ..+.+....|...+.... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36788999999999999999999999999999999985          345555455555554433 6899999999999


Q ss_pred             cccchhhh------cCCCCCCCccHHHHHHHHHH-----c----CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          123 LREDKQYL------INHPGATPITTAQGEELKKL-----I----GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +....-..      .++.....-..+.+..+...     .    ..+..+.++|.+-++++.+|+.+.+.++..
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            76543211      11111112233444443332     1    222345689999999999999998877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=1.5e-13  Score=109.33  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=108.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +=-|-++|+..-|||||+..|-+........+.++... ...+...+. -.++|.|||||..|..++..-..-.|++++|
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            33567889999999999999987655443333332222 334444432 5677999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-H-------HHHHcCCcEEE
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-E-------LKKLIGAAVYI  157 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~  157 (197)
                      +.+.|.--....  .-++..+.  .++|+|+..||+|..+..             ++.+. +       ..+--|.++++
T Consensus       232 VAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQvi  294 (683)
T KOG1145|consen  232 VAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQVI  294 (683)
T ss_pred             EEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCceeEE
Confidence            998885433332  11122222  489999999999987632             22222 2       22233567899


Q ss_pred             EecccCCCCHHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ++||++|+|++.+-+++.-.+
T Consensus       295 piSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  295 PISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EeecccCCChHHHHHHHHHHH
Confidence            999999999999998887655

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.55  E-value=1.8e-13  Score=108.47  Aligned_cols=82  Identities=24%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEE---------------------ECC-eEEEEEEEecCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAG   64 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g   64 (197)
                      ++|+++|.||||||||+|+|++..... ++..++.+.....+.                     .++ ....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999865532 444343222222111                     111 236789999999


Q ss_pred             Cc----CcccccccC---cCCCcEEEEEEECC
Q 029177           65 QE----DYNRLRPLS---YRGADVFLLAFSLI   89 (197)
Q Consensus        65 ~~----~~~~~~~~~---~~~~~~~i~v~d~~   89 (197)
                      ..    ....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    223333334   78999999999997

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.55  E-value=1.4e-13  Score=103.44  Aligned_cols=171  Identities=18%  Similarity=0.232  Sum_probs=114.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE--EECCeEEEEEEEecCCCcCcccccccCcCC---C-cE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV--VVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---A-DV   81 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---~-~~   81 (197)
                      -+|+|+|+.++|||||+.+|.+-.-...  .....+....+  ..++....+.+|-..|.--...+..+.+..   + -.
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            3799999999999999999987542222  12122222222  223344677799888876554444444432   2 36


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCC---------------------------------------------------
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYAP---------------------------------------------------  110 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------------------------------------------  110 (197)
                      +|++.|+++++..-+..++|...+.++..                                                   
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            77899999997755544888766554420                                                   


Q ss_pred             -----------CCCEEEEeeCCCccc----chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHH
Q 029177          111 -----------TVPIVLVGTKQDLRE----DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI  175 (197)
Q Consensus       111 -----------~~p~iiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  175 (197)
                                 ++|+++|+||+|...    ..++...+.   -......+.||.++|+ ..|.+|+++..|++-++..|.
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehf---dfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHF---DFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHH---HHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHH
Confidence                       238999999999732    111000000   1344567889999998 799999999999999999999


Q ss_pred             HHHcCCCCc
Q 029177          176 KVVLQPPKP  184 (197)
Q Consensus       176 ~~~~~~~~~  184 (197)
                      ...+.....
T Consensus       287 hr~yG~~ft  295 (473)
T KOG3905|consen  287 HRSYGFPFT  295 (473)
T ss_pred             HHhcCcccC
Confidence            988765544

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.54  E-value=1.4e-14  Score=94.01  Aligned_cols=137  Identities=23%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc----CcccccccCcCCCcEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~   84 (197)
                      |++++|..|+|||||.+.+.+...  .+..|.      -+.++++.    .+||||.-    .+.+-.......+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccc------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999988643  222222      12233321    57899842    222222234578999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |-.+++++|.-..  -+...     -..|+|-|.+|.|+.++            -..+....|..+-|..++|++|+.++
T Consensus        71 v~~and~~s~f~p--~f~~~-----~~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFPP--GFLDI-----GVKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCCc--ccccc-----cccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            9999999774442  22211     13569999999999864            34467788999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIK  176 (197)
Q Consensus       165 ~~i~~~~~~i~~  176 (197)
                      .|++++++.+..
T Consensus       132 ~gv~~l~~~L~~  143 (148)
T COG4917         132 QGVEELVDYLAS  143 (148)
T ss_pred             ccHHHHHHHHHh
Confidence            999999998865

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.52  E-value=2.3e-13  Score=117.83  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=94.2

Q ss_pred             CHHHHHHHHhcCCCCCCCCCceeeeee-EEEEECCe-----------E-----EEEEEEecCCCcCcccccccCcCCCcE
Q 029177           19 GKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGS-----------T-----VNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus        19 GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~-----~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      +||||+..+.+..........++.... ..+..+..           .     -.+.|||||||+.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            499999999987665544444322221 22222210           0     127899999999998887778888999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc------cHHHH--------
Q 029177           82 FLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI------TTAQG--------  144 (197)
Q Consensus        82 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------~~~~~--------  144 (197)
                      +++|+|+++   +.+++.+     ..+...  ++|+++|+||+|+..........+....+      ...+.        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I-----~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAI-----NILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHH-----HHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   4444443     233332  68999999999986421100000000000      00000        


Q ss_pred             HHH-------------HHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          145 EEL-------------KKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       145 ~~~-------------~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      .++             .+-.+.++++++||++|+|+++++.++....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            001             1113456899999999999999998886544

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=2.8e-14  Score=121.20  Aligned_cols=117  Identities=18%  Similarity=0.075  Sum_probs=79.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC---------------CCCCC---CCCcee-eeeeEEEEECCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN---------------TFPTD---YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~---------------~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      .+..+|+++|+.++|||||+++|+..               .+...   ...|.. .........++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45568999999999999999999752               11111   001111 111112234556688999999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .+|.......++.+|++++|+|+.+....... ..|.. ...  .+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-ALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-HHH--cCCCEEEEEEChhccc
Confidence            99887777889999999999999875443332 22322 222  2678899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.48  E-value=3.4e-13  Score=101.24  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             EEEEEecCCCcCcc---cccccCc---CC--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           56 NLGLWDTAGQEDYN---RLRPLSY---RG--ADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        56 ~~~~~D~~g~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      .+.+||+||+.+..   ..+..++   ..  .+++++++|++...+..+.. ..|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            57799999986632   2322222   22  88999999997655433321 2233222222247999999999998765


Q ss_pred             hhhhc-CCCCCC----------Ccc--HHHHH---HHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          127 KQYLI-NHPGAT----------PIT--TAQGE---ELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       127 ~~~~~-~~~~~~----------~~~--~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ..... ......          ...  ..-.+   +..+..+ ..+++.+|+++++|++++.++|.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            32110 000000          000  00111   1122333 347899999999999999999988764

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=5.9e-14  Score=110.62  Aligned_cols=171  Identities=16%  Similarity=0.051  Sum_probs=119.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccc-----ccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLR-----PLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~-----~~~~~   77 (197)
                      -.++|+|-|+||||||++.+..... ...|..|+...+..++....  ..+|+.||||.-+..    ...     ....+
T Consensus       169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALAH  246 (620)
T KOG1490|consen  169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALAH  246 (620)
T ss_pred             CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence            3689999999999999998887544 34555666666665554444  788999999954321    111     11123


Q ss_pred             CCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH--HHHHHHHcCC
Q 029177           78 GADVFLLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ--GEELKKLIGA  153 (197)
Q Consensus        78 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  153 (197)
                      --.+++++.|++..  -|.... -.++..++..+.+.|.|+|+||+|+-....          +..+.  ..+....-+.
T Consensus       247 LraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~~~  315 (620)
T KOG1490|consen  247 LRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDDGN  315 (620)
T ss_pred             hhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhccC
Confidence            33578899998764  455555 456677777778999999999999876543          44433  2333344454


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCCCcccccCCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKA  191 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~  191 (197)
                      ++++++|..+.+|+-++-...+..++..+-..+.+.++
T Consensus       316 v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~  353 (620)
T KOG1490|consen  316 VKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSES  353 (620)
T ss_pred             ceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhh
Confidence            68999999999999999999998888777766655443

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.47  E-value=2.5e-12  Score=103.47  Aligned_cols=173  Identities=18%  Similarity=0.219  Sum_probs=113.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEEE--CCeEEEEEEEecCCCcCcccccccCcCCC----c
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGA----D   80 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----~   80 (197)
                      -.|+|+|..++|||||+.+|.+..   .+.++....|.. .+.-  .+....+.+|-..|...+..+....+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            379999999999999999987642   333343333322 2221  12335678999988777777766666432    3


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC---------------------------------------------------
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA---------------------------------------------------  109 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------------------------  109 (197)
                      .+++|.|.+.|+.+-+....|+..++.+.                                                   
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            78889999999765433344442222110                                                   


Q ss_pred             ------------CCCCEEEEeeCCCcccchhhhc-CCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          110 ------------PTVPIVLVGTKQDLREDKQYLI-NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       110 ------------~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                                  -++|++||++|+|....-+... ...+.--+...-.+.+|-.||+ .+|.+|++...+++-++..|..
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence                        0259999999999764321100 0000001333557889999998 7888999999999999999998


Q ss_pred             HHcCCCCc
Q 029177          177 VVLQPPKP  184 (197)
Q Consensus       177 ~~~~~~~~  184 (197)
                      .+......
T Consensus       262 ~l~~~~f~  269 (472)
T PF05783_consen  262 RLYGFPFK  269 (472)
T ss_pred             HhccCCCC
Confidence            88776654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.46  E-value=1.8e-14  Score=106.95  Aligned_cols=122  Identities=20%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             EEEEEecCCCcCcccccccCc--------CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccc
Q 029177           56 NLGLWDTAGQEDYNRLRPLSY--------RGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED  126 (197)
Q Consensus        56 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~  126 (197)
                      .+.++|||||.++...+....        ...-++++++|.....+.......++..+.... -+.|.+.|.||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            577999999987654433322        345588889998655442222122222222211 27999999999999873


Q ss_pred             hhhhcC-------------CCCCCCccHHHHHHHHHHcCCc-EEEEecccCCCCHHHHHHHHHHHH
Q 029177          127 KQYLIN-------------HPGATPITTAQGEELKKLIGAA-VYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       127 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ......             ... .....+...++...++.. +++.+|+.+++|+++++..+-+..
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~-~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESD-YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT--HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            210000             000 000111222333344555 899999999999999999887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.46  E-value=1.8e-12  Score=93.90  Aligned_cols=102  Identities=21%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCCcccchhhhcC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI--VLVGTKQDLREDKQYLIN  132 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~D~~~~~~~~~~  132 (197)
                      ....+.++.|..-.....+   .-+|.++.|+|+.+.++...   .+.       +++..  ++++||+|+.....    
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~----  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG----  154 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence            3455777777321111111   12688999999997666322   111       13334  88899999974211    


Q ss_pred             CCCCCCccHHHHHHHHHH-cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          133 HPGATPITTAQGEELKKL-IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                            ...+...+..+. .+..+++++||++|+|++++|+++.+.+.
T Consensus       155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                  122333333333 34568999999999999999999997664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.46  E-value=7.6e-13  Score=98.84  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=77.2

Q ss_pred             cCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +++..+.+.++.++|++++|||++++. ++..+ .+|+..+..  .++|+++|+||+|+.+...          +..+..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence            577888888999999999999999887 78888 888876654  4899999999999965432          333444


Q ss_pred             HHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          145 EELKKLIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       145 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      ..+. ..+. +++++||++|+|++++|+.+..
T Consensus        91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4444 4665 8999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00275 G_alpha G protein alpha subunit

Probab=99.45  E-value=1.5e-12  Score=101.66  Aligned_cols=127  Identities=16%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYA-PTVPIVLVGTKQDL  123 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  123 (197)
                      ..+.+||.+|+...+..|.+++.++++++||+|+++.          ..+.+....|...+.... .+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5678999999999999999999999999999999974          345555455555554332 68999999999998


Q ss_pred             ccchhhh-----cCCCCCCCccHHHHHHHHHH-----c-----CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          124 REDKQYL-----INHPGATPITTAQGEELKKL-----I-----GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       124 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ....-..     ..+........+.+..+...     .     ....++.++|.+-.++..+|+.+...+++.
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            7543111     01111111233444433221     1     123345688999999999999888877543

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.43  E-value=3.2e-12  Score=95.49  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---c-------c
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R   72 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~   72 (197)
                      ...++|+++|.+|||||||+|++++.....  ...+++..........++  ..+.+|||||-.+...   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            356899999999999999999999865422  222333322223334455  5678999999764421   0       1


Q ss_pred             ccCc--CCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccch
Q 029177           73 PLSY--RGADVFLLAFSLISKA-SYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDK  127 (197)
Q Consensus        73 ~~~~--~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~  127 (197)
                      ..++  ...|++++|..++... ...+  ...++.+...+.   -.++++|.||+|...+.
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            1122  2578888887665432 2222  234444444331   24799999999987543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.43  E-value=4.1e-12  Score=96.58  Aligned_cols=117  Identities=15%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc-------cCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSY   76 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~   76 (197)
                      ..++|+++|.+|+||||++|++++....  ....+.+..........++  ..++++||||..+......       .++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            5789999999999999999999986531  1222222111112223444  6788999999765421111       111


Q ss_pred             --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 029177           77 --RGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLRE  125 (197)
Q Consensus        77 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~  125 (197)
                        ...|++++|.+++... +.......+..+...+.   -.++|++.|+.|...
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence              2689999996654321 11111233444444331   247899999999764

>cd01882 BMS1 Bms1

Probab=99.41  E-value=1.6e-11  Score=90.71  Aligned_cols=169  Identities=17%  Similarity=0.093  Sum_probs=92.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ....|+++|++|+|||||++.+.+..-........+. +  .+. ......+.++|+||..  .. ....++.+|+++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~-~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVV-TGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEE-ecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEE
Confidence            3567999999999999999999864211110000011 1  111 1233567799999853  11 12235789999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HH-HHcCCcEEEEeccc
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEE-LK-KLIGAAVYIECSSK  162 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~Sa~  162 (197)
                      +|.+.......  ..++..+...  +.|. ++|+||.|+.++...      . ....+..+. +. ......+++.+||+
T Consensus       111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~-~~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------L-RKTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------H-HHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            99986554433  2344444443  5775 459999998643210      0 001112222 22 12344589999999


Q ss_pred             CCC--CHHHHHHHHHHHHcCCCCcccccCCCCC
Q 029177          163 TQQ--NVKTVFDAAIKVVLQPPKPKKRKRKARP  193 (197)
Q Consensus       163 ~~~--~i~~~~~~i~~~~~~~~~~~~~~~k~~~  193 (197)
                      ++-  ...+. ..+.+.+-....+.-.-+..++
T Consensus       180 ~~~~~~~~e~-~~~~r~i~~~~~~~~~~r~~r~  211 (225)
T cd01882         180 VHGRYPKTEI-HNLARFISVMKFRPLNWRNSHP  211 (225)
T ss_pred             cCCCCCHHHH-HHHHHHHHhCCCCCCeeecCCC
Confidence            873  33443 2334444333333333333333

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=9e-12  Score=94.54  Aligned_cols=174  Identities=17%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc----CCCCCCCCCce----eeeeeEEEE-------ECCeEEEEEEEecCCC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS----NTFPTDYVPTV----FDNFSANVV-------VDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~----~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~D~~g~   65 (197)
                      |-+....+++.++|+-.+|||||.+++..    ..|.....+++    .+.--..+.       -.++...+.+.|+|||
T Consensus         1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            44556679999999999999999999986    23433333332    111111111       1456688999999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE  145 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      ...-...-....-.|..++|+|+...-.-..+....+..+-.    ...++|.||.|.....++       .....+.+.
T Consensus        81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~lpE~qr-------~ski~k~~k  149 (522)
T KOG0461|consen   81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVLPENQR-------ASKIEKSAK  149 (522)
T ss_pred             HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccccchhh-------hhHHHHHHH
Confidence            765443333344568999999998765555542233333332    246777788887654220       011222233


Q ss_pred             HHHHHc------CCcEEEEecccCC----CCHHHHHHHHHHHHcCCCCcc
Q 029177          146 ELKKLI------GAAVYIECSSKTQ----QNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       146 ~~~~~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~  185 (197)
                      .+.+.+      +..|++++||..|    +++.++.+.+..++..+.+..
T Consensus       150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence            333322      3468999999999    889999998888887766654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.39  E-value=8.1e-13  Score=114.03  Aligned_cols=118  Identities=15%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCC--CCCC---------CCC------ceeeeeeEEEEE--------------C
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD---------YVP------TVFDNFSANVVV--------------D   51 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~---------~~~------~~~~~~~~~~~~--------------~   51 (197)
                      +.++.-+|+|+|+.++|||||+++|+...  ....         +.+      .+.......+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            34456689999999999999999998532  1110         000      000000011111              1


Q ss_pred             CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      +..+.+.++|||||.+|.......++.+|++++|+|+...-..... ..|......   ++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE---RIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHC---CCCEEEEEECCccc
Confidence            2357788999999999988888888999999999999887555443 444443333   78999999999987

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.39  E-value=7.5e-12  Score=83.71  Aligned_cols=113  Identities=27%  Similarity=0.379  Sum_probs=78.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      +|++++|+.|+|||+|+.++....+...+. ++..                          +........+.++.+++|+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998877754432 2222                          2222334567789999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      +.+++++++..   |...+.... .++|.++++||.|+.+...          +..++..         +++++|+++++
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence            99999998764   555554433 4788999999999844211          3322222         35567888888


Q ss_pred             CHH
Q 029177          166 NVK  168 (197)
Q Consensus       166 ~i~  168 (197)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=1e-12  Score=113.21  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCce-------------eeee--eEEEEEC--------CeEEEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV-------------FDNF--SANVVVD--------GSTVNLG   58 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~-------------~~~~--~~~~~~~--------~~~~~~~   58 (197)
                      .++.-+|+++|+.++|||||+++|+..  ........++             .+..  ...+.+.        +..+.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            445668999999999999999999862  1111100000             0000  0111222        2246788


Q ss_pred             EEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        59 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      ++||||+.+|.......++.+|++++|+|+.+.-..... ..|. .+...  ++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHHHc--CCCEEEEEEChhhh
Confidence            999999999888778888999999999999886554443 3443 33332  68999999999997

>PTZ00258 GTP-binding protein; Provisional

Probab=99.38  E-value=2.2e-11  Score=95.86  Aligned_cols=85  Identities=19%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   68 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~   68 (197)
                      ...++|++||.||||||||+|+|.+... ..++..++.+.....+.+.+.               ...++++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            3568999999999999999999987543 334555554444444444332               134889999996432


Q ss_pred             ccc-------cccCcCCCcEEEEEEECC
Q 029177           69 NRL-------RPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        69 ~~~-------~~~~~~~~~~~i~v~d~~   89 (197)
                      .+.       ....++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            211       112357899999999973

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.38  E-value=7.9e-12  Score=106.68  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=77.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC---------CCCc------eeeeeeEEE--EECCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVPT------VFDNFSANV--VVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~---------~~~~------~~~~~~~~~--~~~~~~~~~~~~D~~g~   65 (197)
                      ++.-+|+++|+.++|||||+.+|+..  .....         +.+.      +...-...+  ..++..+.+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            34457999999999999999999752  11110         0000      000000111  22444578889999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .+|.......++.+|++++|+|+......... ..|......   +.|.++++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~~---~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALRE---RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHHc---CCCeEEEEECchhhc
Confidence            99987777788999999999998876544443 344333222   568899999999863

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.2e-12  Score=105.89  Aligned_cols=181  Identities=15%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEE-E------------CCe----EEEEEEEecCCCcCcccc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-V------------DGS----TVNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-~------------~~~----~~~~~~~D~~g~~~~~~~   71 (197)
                      -|+|+|+..+|||-|+..+.+........+.+...+..++. .            +++    .=-+.++|||||+.|..+
T Consensus       477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl  556 (1064)
T KOG1144|consen  477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL  556 (1064)
T ss_pred             eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence            48999999999999999998865544433333222221111 0            111    113568999999999999


Q ss_pred             cccCcCCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh-------hhcCCCCCCCcc-
Q 029177           72 RPLSYRGADVFLLAFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ-------YLINHPGATPIT-  140 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-------~~~~~~~~~~~~-  140 (197)
                      ..+....||++|+|+|+.+.   .+++.+     ..++..  +.|+||+.||+|....-.       ..........+. 
T Consensus       557 RsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  557 RSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhccccccceEEEEeehhccCCcchhHHH-----HHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            99999999999999999875   344443     444444  799999999999653100       000000000000 


Q ss_pred             ------HHHHHHHHH-Hc------------CCcEEEEecccCCCCHHHHHHHHHHHHcCCCCcccccCCCCCccc
Q 029177          141 ------TAQGEELKK-LI------------GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIF  196 (197)
Q Consensus       141 ------~~~~~~~~~-~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~  196 (197)
                            .....+|+. .+            ..+.++++||..|+|+-+++.+|++.....-..+-...-.-.|.+
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTV  704 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTV  704 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEE
Confidence                  001112221 11            134577899999999999999999877655444444444444433

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.37  E-value=1.1e-11  Score=94.31  Aligned_cols=156  Identities=17%  Similarity=0.152  Sum_probs=99.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCC-----------CCC-CCceeeeeeE---------------EEE-----EC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFP-----------TDY-VPTVFDNFSA---------------NVV-----VD   51 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~-----------~~~-~~~~~~~~~~---------------~~~-----~~   51 (197)
                      ....+|++.+|+..-||||||-||+.+.-.           .+. ..+.......               ++.     +.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            446799999999999999999999864210           000 0111111110               111     11


Q ss_pred             CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhc
Q 029177           52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI  131 (197)
Q Consensus        52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  131 (197)
                      -....|-+-|||||+.|......-.+.||++|+++|+...-.-..-++.++..+-   .-..+++..||+||.+-.+.  
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~--  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE--  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH--
Confidence            1224677999999999998888888899999999998543322222222322222   23468889999999874430  


Q ss_pred             CCCCCCCccHHHHHHHHHHcCC--cEEEEecccCCCCHH
Q 029177          132 NHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVK  168 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  168 (197)
                          .-.-...+...|+.+++.  ..++++||..|+|+-
T Consensus       158 ----~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         158 ----VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ----HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                001233566778888864  358899999999864

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=7.9e-12  Score=97.42  Aligned_cols=115  Identities=16%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc--CCCCC-------------CCCCc------eeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS--NTFPT-------------DYVPT------VFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~--~~~~~-------------~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      =..+||-+|.+|||||...|+-  +....             ...+.      ..+..+..+.++...+.+.+.|||||+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            3578999999999999998762  22211             00011      112223334455556888899999999


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +|+..+-.-+.-+|.+++|+|+...-.-...  +++..++-  .++|++-++||.|....
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~r  148 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREGR  148 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccccC
Confidence            9998877778889999999998876544443  44455444  38999999999997643

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.36  E-value=1.3e-11  Score=95.46  Aligned_cols=106  Identities=16%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.|.||+|...-...   ....+|.++++.+....+.+... +   ..+.    ...-++|+||+|+......     
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k---~gi~----E~aDIiVVNKaDl~~~~~a-----  212 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-K---KGIM----ELADLIVINKADGDNKTAA-----  212 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-H---hhhh----hhhheEEeehhcccchhHH-----
Confidence            67889999997632221   46679999999775544444443 1   1111    1234899999998753210     


Q ss_pred             CCCCccHHHHHHHHHH------cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          135 GATPITTAQGEELKKL------IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                         .....+.......      ...+|++.+||++++|++++++.+.+...
T Consensus       213 ---~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        213 ---RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             ---HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence               0011112222211      12258999999999999999999998764

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.35  E-value=3e-11  Score=94.47  Aligned_cols=157  Identities=14%  Similarity=0.187  Sum_probs=99.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC----C-------------CCCCCCC---ceeeeee---EEEEE---CCeEEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN----T-------------FPTDYVP---TVFDNFS---ANVVV---DGSTVNLG   58 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~----~-------------~~~~~~~---~~~~~~~---~~~~~---~~~~~~~~   58 (197)
                      ...+-|.++|+.++|||||+++|.+.    .             ++.+..+   +++++..   ..+.+   ++....++
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34688999999999999999999976    2             2223333   3322222   22222   45557889


Q ss_pred             EEecCCCcCcccc-----------------------------cccCcC-CCcEEEEEE-ECC----ChhhHHHHHHHHHH
Q 029177           59 LWDTAGQEDYNRL-----------------------------RPLSYR-GADVFLLAF-SLI----SKASYENISKKWIP  103 (197)
Q Consensus        59 ~~D~~g~~~~~~~-----------------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~  103 (197)
                      ++||+|-..-..+                             ....+. .+++.++|. |.+    .++.+.....+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999994321100                             111233 678888887 664    23445555578888


Q ss_pred             HHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC--CCCHHHHHHHHHH
Q 029177          104 ELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT--QQNVKTVFDAAIK  176 (197)
Q Consensus       104 ~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~  176 (197)
                      .++..  ++|++++.|+.|-...            ...+...++...++. |++.+|+.+  .+.+..++..+.-
T Consensus       175 eLk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       175 ELKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHh
Confidence            88877  8999999999994321            233444567777885 777777664  4566666655544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.34  E-value=3.2e-11  Score=94.77  Aligned_cols=163  Identities=15%  Similarity=0.127  Sum_probs=110.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc--CCCCCCCC-------------CceeeeeeEEEEECCeEEEEEEEecCCCcCccccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV-------------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR   72 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   72 (197)
                      =+|++|-+..-|||||+..|+.  +.|.....             ....+...+...++...+.+.+.|||||-+|--..
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            3799999999999999999986  33322110             11122333333344444788899999999999999


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ...++-.|++++++|+.+..-...  ...+...-.  .+.+-|+|.||+|....+..         .-.+++.++...++
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp~---------~Vvd~vfDLf~~L~  152 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARPD---------EVVDEVFDLFVELG  152 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCHH---------HHHHHHHHHHHHhC
Confidence            999999999999999988644333  222222222  26777888899999875431         22244445544443


Q ss_pred             C------cEEEEecccCC----------CCHHHHHHHHHHHHcCCCC
Q 029177          153 A------AVYIECSSKTQ----------QNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       153 ~------~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~~  183 (197)
                      +      +|++..|+..|          +++..+|+.|++.+..+.-
T Consensus       153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            1      47888888764          4688999999999876653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.31  E-value=5.3e-11  Score=86.95  Aligned_cols=151  Identities=14%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCceeeee-eEEEEE-CCe------------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDNF-SANVVV-DGS------------------   53 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~------------~~~~~~~~~~~-~~~~~~-~~~------------------   53 (197)
                      ....|+++|..|+|||||++++......            ........... ...+.+ +++                  
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            4678999999999999999998753110            00000000000 001111 111                  


Q ss_pred             -EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177           54 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN  132 (197)
Q Consensus        54 -~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  132 (197)
                       ...+.+.|+.|.-....   .+....+..+.++|+.+.+.....   ....     ...|.++++||+|+.+...    
T Consensus       101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~----  165 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG----  165 (207)
T ss_pred             CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch----
Confidence             23556777877211111   111234555678888765432111   1111     1457899999999965321    


Q ss_pred             CCCCCCccHHHHHHHHHH-cCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          133 HPGATPITTAQGEELKKL-IGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                            .......+..++ .+..+++++||++++|++++++++.+.
T Consensus       166 ------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 ------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             ------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                  112233333333 334589999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.2e-11  Score=95.74  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=96.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC--------------------CCCCCCCC----------ceeeeeeEEEEECCeEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN--------------------TFPTDYVP----------TVFDNFSANVVVDGSTV   55 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~--------------------~~~~~~~~----------~~~~~~~~~~~~~~~~~   55 (197)
                      ..+.++++|+..+|||||+.+++..                    +..-.|..          ...+-......++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            3689999999999999999887642                    11111111          11112223334555667


Q ss_pred             EEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HH------HHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           56 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE------NISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        56 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~------~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      .+++.|+|||.+|-...-.-...||++++|+|++..+-   |+      +. ..++..+.    -.-++|++||+|+.+=
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg----i~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG----ISQLIVAINKMDLVSW  330 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC----cceEEEEeecccccCc
Confidence            89999999999998887778889999999999876431   11      11 22233332    3468899999999862


Q ss_pred             hhhhcCCCCCCCccHHHHHHHH-HHcC----CcEEEEecccCCCCHHHH
Q 029177          127 KQYLINHPGATPITTAQGEELK-KLIG----AAVYIECSSKTQQNVKTV  170 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~~i~~~  170 (197)
                      .+      ..-.........|. +..|    .+.|+++|+..|+|+-..
T Consensus       331 sq------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  331 SQ------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cH------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            11      00001112223333 3333    246999999999997644

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.30  E-value=1.4e-10  Score=85.08  Aligned_cols=162  Identities=19%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----------cc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   73 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~   73 (197)
                      ++|+|+|.+|+||||++|.+++........   +.+..........++  ..+.++||||-.+....           ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999865433321   222222233346677  56779999995332111           01


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccchhhhcCCCCCCCcc---HHHHHHH
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP---TVPIVLVGTKQDLREDKQYLINHPGATPIT---TAQGEEL  147 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~  147 (197)
                      ....+.|++++|+..+ +-+-.+  ...+..+...+.   -..++||.|..|.......      ...+.   ....+++
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~------~~~l~~~~~~~l~~l  149 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSL------EDYLKKESNEALQEL  149 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH------HHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccH------HHHHhccCchhHhHH
Confidence            1245789999999988 333222  233333333331   1358888898886654210      00011   1335667


Q ss_pred             HHHcCCcEEEEeccc------CCCCHHHHHHHHHHHHcCC
Q 029177          148 KKLIGAAVYIECSSK------TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       148 ~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~  181 (197)
                      .+..+. .++.++.+      ....+.+++..|-+.+...
T Consensus       150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            777887 67777666      3456888888887766544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.28  E-value=2.2e-10  Score=89.35  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=56.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~~   71 (197)
                      ++|++||.||||||||+|++++... ..++..++.+.....+.+.+..               ..+++.|+||...-.+.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            6899999999999999999998653 2344555544444444444321               25889999996532111


Q ss_pred             -------cccCcCCCcEEEEEEECC
Q 029177           72 -------RPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        72 -------~~~~~~~~~~~i~v~d~~   89 (197)
                             ....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                   112367899999999984

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.27  E-value=2.7e-10  Score=86.59  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=67.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccc----
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----   71 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----   71 (197)
                      .|+|+|+|.+|+|||||+|.|++.......          ..+. .......+.-++..+.++++||||--+....    
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986443221          0111 1222233444677889999999993321100    


Q ss_pred             ----------------------c-ccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           72 ----------------------R-PLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        72 ----------------------~-~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                                            . ...=...|+++++++++... +-.++  .++..+..   .+++|-|..|+|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~---~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSK---RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhcc---cccEEeEEecccccCH
Confidence                                  0 00013578999999987532 22232  34455554   5788989999998543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.27  E-value=3e-11  Score=94.24  Aligned_cols=168  Identities=13%  Similarity=0.126  Sum_probs=79.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCce--eeeeeEEEEECCeEEEEEEEecCCCcC--ccc---ccccCcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNFSANVVVDGSTVNLGLWDTAGQED--YNR---LRPLSYR   77 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~---~~~~~~~   77 (197)
                      .+++|+|+|.+|+|||||||.|.+-.-.+. ..++.  .+......-.....-.+.+||.||...  +..   ....-+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            468999999999999999999986322211 12221  111111111111112477999999532  211   1122356


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH----HHHH---
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE----LKKL---  150 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---  150 (197)
                      ..|.+|++.+  .+-+..+  ..+...+...  +.|+.+|-||+|..-....   ....+....++..+    -+.+   
T Consensus       114 ~yD~fiii~s--~rf~~nd--v~La~~i~~~--gK~fyfVRTKvD~Dl~~~~---~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  114 RYDFFIIISS--ERFTEND--VQLAKEIQRM--GKKFYFVRTKVDSDLYNER---RRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             G-SEEEEEES--SS--HHH--HHHHHHHHHT--T-EEEEEE--HHHHHHHHH---CC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEeC--CCCchhh--HHHHHHHHHc--CCcEEEEEecccccHhhhh---ccCCcccCHHHHHHHHHHHHHHHHH
Confidence            7788777665  3323333  2444555555  7899999999996311110   01111233333222    2222   


Q ss_pred             ---cCCcEEEEecccCC--CCHHHHHHHHHHHHcCCC
Q 029177          151 ---IGAAVYIECSSKTQ--QNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       151 ---~~~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~  182 (197)
                         ...+++|-+|+.+-  .+...+.+.+.+.+...+
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence               13467889999874  456677777777665443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=6.2e-11  Score=99.43  Aligned_cols=118  Identities=18%  Similarity=0.178  Sum_probs=85.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCC------CceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYV------PTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      .++.-+|.++|+-.+|||||..+++.  +....           ++.      ..+...-..++.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            44667899999999999999999875  21111           000      001111112233343 47888999999


Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |-+|.......++-+|++++|+|+...-....- ..|.+..+.   ++|.+++.||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccccc
Confidence            999999999999999999999999987666554 566655554   6999999999997654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.20  E-value=7.6e-11  Score=83.19  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             EEEEecCCCcCc----ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177           57 LGLWDTAGQEDY----NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ  121 (197)
Q Consensus        57 ~~~~D~~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  121 (197)
                      +.|+|+||-...    ...+..++..+|++++|.++++..+-... ..+.+.....  ...+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            679999996432    24456667999999999999997665554 5565565554  33488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=5.4e-11  Score=96.94  Aligned_cols=118  Identities=24%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc---------ee----eeee---E--EEE---ECCeEEEEEEEe
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT---------VF----DNFS---A--NVV---VDGSTVNLGLWD   61 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~---------~~----~~~~---~--~~~---~~~~~~~~~~~D   61 (197)
                      ++....++.++|+-+.|||+|+..|.....++-+..+         ..    ...+   .  ++.   .+++.+.+++.|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            5567788999999999999999998875443221111         10    0000   0  111   256778999999


Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      ||||-+|.+.....++.+|++++++|+.+.-.+..-  +.+...-.  .+.|+++|+||.|..
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHHH
Confidence            999999999999999999999999999988776663  33222222  379999999999954

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.19  E-value=6e-11  Score=94.78  Aligned_cols=161  Identities=25%  Similarity=0.418  Sum_probs=124.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+|+.|||..++|||+|+.+++.+.|..+..+. ...+...+..++....+.+.|.+|...     ..+..+.|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCc-CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            3589999999999999999999999997765554 556677778888888999999988543     3456778999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |.+.+..+++.+ ..+...+..+.  ..+|+++++++.-.....        .+.+...++.+++..+..-.+|++.+.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999998 44444444333  578999999886654432        2335666677776666544799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029177          164 QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~  181 (197)
                      |.++...|..+...+...
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999999877655

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.19  E-value=6.5e-10  Score=85.76  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhH----------HHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY----------ENISKKWIPELRHYA-PTVPIVLVGTKQDL  123 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  123 (197)
                      ..+.++|++||..-+..|.+++.++++++||+++++.+..          .+....|-..+.... .+.++|++.||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            6788999999999999999999999999999999986532          111122222332222 68999999999998


Q ss_pred             ccchhhh-----cCCCCCCCccHHHHHHHHH--------Hc-CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          124 REDKQYL-----INHPGATPITTAQGEELKK--------LI-GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       124 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      .+.....     ..+.....-..+++..+.+        .. ...-+..+.|.+-.+++.+|+.+.+.+...
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            8653210     1111111123334433322        22 122344578888899999999999877543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.19  E-value=2.9e-09  Score=77.86  Aligned_cols=152  Identities=18%  Similarity=0.215  Sum_probs=103.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~   78 (197)
                      .-||+++|-|.||||||+..+....- ..+|..|+.+.....+.+++  ..+|+.|.||.-.-.+.       .-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            46899999999999999999987533 34566677677777778888  57789999995432221       1223578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC----CC-------------------------------------------
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYA----PT-------------------------------------------  111 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~-------------------------------------------  111 (197)
                      ||.+++|.|++..+.-..+..+-+..+.-..    |+                                           
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999987654433222222221111    11                                           


Q ss_pred             -------------------CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHH
Q 029177          112 -------------------VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD  172 (197)
Q Consensus       112 -------------------~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  172 (197)
                                         ++.+-|.||+|.               ++.+++..++++-+.   +.+|+.-..|++.+++
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~lle  281 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLLE  281 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHHH
Confidence                               144556666665               777888888876554   5567778889999999


Q ss_pred             HHHHHH
Q 029177          173 AAIKVV  178 (197)
Q Consensus       173 ~i~~~~  178 (197)
                      .+-..+
T Consensus       282 ~iWe~l  287 (364)
T KOG1486|consen  282 RIWEEL  287 (364)
T ss_pred             HHHHHh
Confidence            888765

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=3.7e-09  Score=81.69  Aligned_cols=83  Identities=19%  Similarity=0.169  Sum_probs=56.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECC----------------eEEEEEEEecCCCcCc--
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG----------------STVNLGLWDTAGQEDY--   68 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~--   68 (197)
                      +++.+||.||||||||.|.++...- ..+|+.+|.+.-...+.+.+                ....++|+|++|.-.-  
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            6899999999999999999998654 25666665443333332211                1356889999985432  


Q ss_pred             --cccccc---CcCCCcEEEEEEECCC
Q 029177           69 --NRLRPL---SYRGADVFLLAFSLIS   90 (197)
Q Consensus        69 --~~~~~~---~~~~~~~~i~v~d~~~   90 (197)
                        .-+-..   -++.+|+++.|+|+..
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              222223   3678999999999874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.13  E-value=1.1e-09  Score=84.30  Aligned_cols=107  Identities=14%  Similarity=0.081  Sum_probs=62.6

Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH  133 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  133 (197)
                      .+.+.|.||+|.....   ......+|.++++.+..   +.+++ ..+...+    .+.|.++++||+|+.......   
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~---  191 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGL----MEIADIYVVNKADGEGATNVT---  191 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHH----hhhccEEEEEcccccchhHHH---
Confidence            3677899999854221   12456678888775433   33333 2222222    256889999999997542100   


Q ss_pred             CCCCCccHH---HHHHHHHH-cC-CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          134 PGATPITTA---QGEELKKL-IG-AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       134 ~~~~~~~~~---~~~~~~~~-~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          .....   ....+... .+ .++++.+||++++|++++++++....
T Consensus       192 ----~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       192 ----IARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             ----HHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence                00000   00111111 11 13689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.09  E-value=1.2e-10  Score=83.92  Aligned_cols=117  Identities=23%  Similarity=0.353  Sum_probs=81.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-----ccccccCcCCCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRGAD   80 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~~   80 (197)
                      =||+++|.+|+|||++-.-++.+.  +.....+.+.+....++.+-| ...+.+||++||+.+     +......+++.+
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            489999999999999987776432  222222222333333343333 267889999999843     346677889999


Q ss_pred             EEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           81 VFLLAFSLISKASYENISKKW---IPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +++++||++..+-..++ ..+   ++.+.++.|...+.+...|.|+...
T Consensus        84 vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             eeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence            99999999998765555 333   4555666677778888999999753

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.1e-09  Score=82.53  Aligned_cols=166  Identities=17%  Similarity=0.135  Sum_probs=106.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc---CCCCCC----------CCCce----eeee-----e--EEEEEC----CeEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS---NTFPTD----------YVPTV----FDNF-----S--ANVVVD----GSTVNL   57 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~---~~~~~~----------~~~~~----~~~~-----~--~~~~~~----~~~~~~   57 (197)
                      -.++|.++|+..-|||||..+|++   .++.++          |..+.    .+.+     .  ......    .-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            368999999999999999999886   222111          11000    0000     0  000001    112457


Q ss_pred             EEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177           58 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH  133 (197)
Q Consensus        58 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  133 (197)
                      -|.|.|||+-.-+....-..-.|++++|+.++.+    ++-+.+.  -++.+.    -..++++-||.|+......    
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleIig----ik~iiIvQNKIDlV~~E~A----  158 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEIIG----IKNIIIVQNKIDLVSRERA----  158 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhhhc----cceEEEEecccceecHHHH----
Confidence            7999999987655544445567999999999875    3333331  122222    2468999999999764331    


Q ss_pred             CCCCCccHHHHHHHHHHcC--CcEEEEecccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177          134 PGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  185 (197)
                          .-.+++.++|.+..-  ..|++.+||..+.|++-+++.|...+..+.+.-
T Consensus       159 ----lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~  208 (415)
T COG5257         159 ----LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL  208 (415)
T ss_pred             ----HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence                134455566655442  238999999999999999999999997776554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=7.4e-10  Score=86.75  Aligned_cols=154  Identities=19%  Similarity=0.123  Sum_probs=102.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC---CCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF---PTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      -|+..|+---|||||+..+.+..-   ++. ...++.+.-.......+  ..+.|+|.||++++-+..-..+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467889999999999999988432   222 22233222222223333  478899999999987776667788999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           85 AFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        85 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      |++.++.   .+.+.+  ..++.+..    ...++|+||+|..++...       .... ++..+... +...++|.+|+
T Consensus        80 vV~~deGl~~qtgEhL--~iLdllgi----~~giivltk~D~~d~~r~-------e~~i-~~Il~~l~-l~~~~i~~~s~  144 (447)
T COG3276          80 VVAADEGLMAQTGEHL--LILDLLGI----KNGIIVLTKADRVDEARI-------EQKI-KQILADLS-LANAKIFKTSA  144 (447)
T ss_pred             EEeCccCcchhhHHHH--HHHHhcCC----CceEEEEeccccccHHHH-------HHHH-HHHHhhcc-ccccccccccc
Confidence            9999654   444444  22333332    346899999999864320       0011 11111111 44557899999


Q ss_pred             cCCCCHHHHHHHHHHHHc
Q 029177          162 KTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~  179 (197)
                      ++|+|++++-+.|.+..-
T Consensus       145 ~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         145 KTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999999874

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.05  E-value=5.3e-09  Score=73.83  Aligned_cols=79  Identities=14%  Similarity=0.026  Sum_probs=51.5

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCC--CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HHHHcCCcEE
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-LKKLIGAAVY  156 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  156 (197)
                      +.-++|+|++..+....          +-.|.  ..=++|+||.|+...-.          ...+...+ ..+-.+..|+
T Consensus       119 ~~~v~VidvteGe~~P~----------K~gP~i~~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~i  178 (202)
T COG0378         119 HLRVVVIDVTEGEDIPR----------KGGPGIFKADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPI  178 (202)
T ss_pred             ceEEEEEECCCCCCCcc----------cCCCceeEeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCE
Confidence            37788888876543221          00010  02378899999987543          33343333 3444466689


Q ss_pred             EEecccCCCCHHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +++|+++|+|++++++++...+
T Consensus       179 i~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         179 IFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEeCCCCcCHHHHHHHHHhhc
Confidence            9999999999999999988654

>PRK00098 GTPase RsgA; Reviewed

Probab=99.02  E-value=2.4e-09  Score=82.41  Aligned_cols=87  Identities=16%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .+.++|.+++|+|++++.+......+|+..+..  .++|+++|+||+|+.++..           ......+..+..+. 
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~-  142 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY-  142 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence            358999999999999887666555778776654  3799999999999963221           11223344455665 


Q ss_pred             EEEEecccCCCCHHHHHHHHH
Q 029177          155 VYIECSSKTQQNVKTVFDAAI  175 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~  175 (197)
                      +++.+||++++|+++++..+.
T Consensus       143 ~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        143 DVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             eEEEEeCCCCccHHHHHhhcc
Confidence            899999999999999998774

>cd01855 YqeH YqeH

Probab=99.01  E-value=1.2e-09  Score=78.82  Aligned_cols=95  Identities=19%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      +...+..+++++|++++|+|++++..-..      ..+.....+.|+++|+||+|+....           ...+....+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            46667778899999999999988652211      1122222468999999999996432           222333333


Q ss_pred             H-----HHcC--CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          148 K-----KLIG--AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       148 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .     ...+  ..+++.+||++++|+++++..+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3     2222  236899999999999999999998763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1.4e-09  Score=81.13  Aligned_cols=169  Identities=18%  Similarity=0.213  Sum_probs=103.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC----------CCCC-CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN----------TFPT-DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~----------~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   70 (197)
                      ..++|..+|+-.-|||||...+..-          .|.. ...|..    .+.-..++.++-....+-..|+|||.+|-.
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK   90 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK   90 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence            4689999999999999999877641          1100 001111    122223333333334555899999999876


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ..-.-.-++|+.|+|+.++|..-.....+.++  .+..  ++|. +++.||+|+.++.+.       ...-..+++++..
T Consensus        91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl--arqv--Gvp~ivvflnK~Dmvdd~el-------lelVemEvreLLs  159 (394)
T COG0050          91 NMITGAAQMDGAILVVAATDGPMPQTREHILL--ARQV--GVPYIVVFLNKVDMVDDEEL-------LELVEMEVRELLS  159 (394)
T ss_pred             HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh--hhhc--CCcEEEEEEecccccCcHHH-------HHHHHHHHHHHHH
Confidence            65555667899999999998654433311111  1111  5655 577799999875531       1134467888888


Q ss_pred             HcCC----cEEEEecccCC-C-------CHHHHHHHHHHHHcCCCCcc
Q 029177          150 LIGA----AVYIECSSKTQ-Q-------NVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       150 ~~~~----~~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~~~~~  185 (197)
                      .|+.    .|++.-||..- +       .|.++.+++-.++..+.+..
T Consensus       160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~  207 (394)
T COG0050         160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI  207 (394)
T ss_pred             HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence            8875    36777777642 2       25666666666666555543

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.01  E-value=6.3e-10  Score=82.31  Aligned_cols=165  Identities=16%  Similarity=0.046  Sum_probs=95.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ce-eeeeeEEEEECCeEEEEEEEecCCC----------cCccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TV-FDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLR   72 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~   72 (197)
                      .+...++++|.+|+|||+|++.++.......... .. .+..-..+.+..   .+.+.|.||-          .++....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence            4568999999999999999999987543222111 22 222222333333   5668999991          1222333


Q ss_pred             ccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCC-ccHHHHHHHH
Q 029177           73 PLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATP-ITTAQGEELK  148 (197)
Q Consensus        73 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~  148 (197)
                      ..++.   +.--+++++|++-+-.-.+.  ..++.+.++  ++|+.+|.||||.........+.++... +.....-+.+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            33332   22345567777665433332  233444444  8999999999998765443322222211 1111111122


Q ss_pred             HHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          149 KLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .... +|++.+|+.++.|+++++..+.+.
T Consensus       287 f~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  287 FLVD-LPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eecc-CCceeeecccccCceeeeeehhhh
Confidence            2222 367789999999999999888774

>smart00053 DYNc Dynamin, GTPase

Probab=98.98  E-value=3.9e-09  Score=78.28  Aligned_cols=69  Identities=19%  Similarity=0.098  Sum_probs=42.3

Q ss_pred             EEEEEEecCCCcCc-------------ccccccCcC-CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177           55 VNLGLWDTAGQEDY-------------NRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK  120 (197)
Q Consensus        55 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  120 (197)
                      ..|.++|+||-...             ..+...+++ ..+++++|+|+...-.-... ..+...+...  +.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            46789999997422             112333455 45688899987653222221 2333334333  7899999999


Q ss_pred             CCcccc
Q 029177          121 QDLRED  126 (197)
Q Consensus       121 ~D~~~~  126 (197)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            999763

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01859 MJ1464 MJ1464

Probab=98.98  E-value=1.3e-09  Score=76.02  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .+..+.++++|++++|+|++++......  .+...+..  .+.|+++|+||+|+.....          .  .....+..
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~~   67 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV----------L--EKWKSIKE   67 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH----------H--HHHHHHHH
Confidence            3455667789999999999886543321  22222322  2689999999999854211          1  11112333


Q ss_pred             HcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          150 LIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       150 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ..+. +++.+||++++|++++++.+.+.+.
T Consensus        68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          68 SEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            3444 7899999999999999999998764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=98.97  E-value=1.5e-09  Score=82.04  Aligned_cols=80  Identities=18%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcccc--
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYNRL--   71 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~~--   71 (197)
                      |+++|.||||||||+|++++... ...+..++.+.....+.+.+..               ..++++|+||...-.+.  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998654 3345555544444444454421               25889999996532211  


Q ss_pred             -----cccCcCCCcEEEEEEECC
Q 029177           72 -----RPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        72 -----~~~~~~~~~~~i~v~d~~   89 (197)
                           .-..++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence                 111257899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.97  E-value=2.1e-08  Score=82.98  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC-CCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc----------ccc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----------RPL   74 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~   74 (197)
                      .++|+++|.+|+||||++|.+++.. +.... .+.+..........++  ..+.++||||..+....          ...
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            4789999999999999999999864 33221 2222222222233455  56789999997653210          111


Q ss_pred             Cc--CCCcEEEEEEECCChhhH-HHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 029177           75 SY--RGADVFLLAFSLISKASY-ENISKKWIPELRHYAP---TVPIVLVGTKQDLRED  126 (197)
Q Consensus        75 ~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~---~~p~iiv~nK~D~~~~  126 (197)
                      ++  ..+|++++|..++..... ++  ..++..+...+.   -.-+|||.|..|...+
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            22  257999999887643332 22  234455544441   2357899999998763

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.97  E-value=4.6e-09  Score=79.54  Aligned_cols=56  Identities=9%  Similarity=0.003  Sum_probs=39.7

Q ss_pred             CCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-HHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          112 VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-LKKLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       112 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .+-++|.||+|+.....          ...+...+ +....+..+++.+||++|+|++++++||...
T Consensus       231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999965211          12223333 3344455689999999999999999999874

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.1e-09  Score=77.27  Aligned_cols=167  Identities=14%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---ccccCcCCCcEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVFLLA   85 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v   85 (197)
                      +|++.|...+||||+..-.+....+.+..--..+..-..-.+.+..+.+++||.|||-.+-.   .....++++.++++|
T Consensus        29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv  108 (347)
T KOG3887|consen   29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV  108 (347)
T ss_pred             eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence            59999999999999987666554322211000000000112334568899999999976532   234567899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh---hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--C-CcEEEEe
Q 029177           86 FSLISKASYENISKKWIPELRH---YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--G-AAVYIEC  159 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~  159 (197)
                      +|+.+. -.+.+ ..+...+.+   ..+++-+-+...|.|...+....   +.++-+-.....+++..-  + -+.++ .
T Consensus       109 IDaQdd-y~eal-a~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki---etqrdI~qr~~d~l~d~gle~v~vsf~-L  182 (347)
T KOG3887|consen  109 IDAQDD-YMEAL-ARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI---ETQRDIHQRTNDELADAGLEKVQVSFY-L  182 (347)
T ss_pred             EechHH-HHHHH-HHHHHHhhheeecCCCceEEEEEEeccCCchhhhh---hhHHHHHHHhhHHHHhhhhccceEEEE-E
Confidence            996543 22222 333333333   33788888999999976433100   000111111111122111  1 12344 4


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      .+.-..++-|.|..+++.+..+
T Consensus       183 TSIyDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  183 TSIYDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             eeecchHHHHHHHHHHHHHhhh
Confidence            4445688999999999877654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.93  E-value=5.3e-09  Score=78.45  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.+++|.|--+-.   .....-+|.++++.-..-.+.++.+..-++        .+.=++|.||.|..+...-     
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------EiaDi~vINKaD~~~A~~a-----  207 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIM--------EIADIIVINKADRKGAEKA-----  207 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhh--------hhhheeeEeccChhhHHHH-----
Confidence            556678887632211   113345788888877666655555422221        2345788999996554210     


Q ss_pred             CCCCccHHHHHHHH-----HHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          135 GATPITTAQGEELK-----KLIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       135 ~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                         .-....+..+.     .....+|.+.+||.+|+|++++++.+.+...
T Consensus       208 ---~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         208 ---ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             ---HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence               00001111111     2223568999999999999999999998664

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=9.4e-09  Score=79.20  Aligned_cols=161  Identities=15%  Similarity=0.186  Sum_probs=97.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeeee----------EEEEE----------CC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------------YVPTVFDNFS----------ANVVV----------DG   52 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~--------------~~~~~~~~~~----------~~~~~----------~~   52 (197)
                      .+|++++|.-.+|||||+--|..+.+...              ..+......+          ..+.+          +.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            57999999999999999977766543211              1100000000          00111          11


Q ss_pred             eEEEEEEEecCCCcCcccccccCcC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL  130 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  130 (197)
                      ..-.++|+|.+|+.+|....-+.+.  ..|.+++++++...-....  ..-+..+...  ++|+.++.+|+|+.......
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence            1235779999999999877655554  3688888888766533222  2223344433  89999999999998763211


Q ss_pred             ---------cCCCC-----CCCccHHHHHHHHHHc---CCcEEEEecccCCCCHHHHH
Q 029177          131 ---------INHPG-----ATPITTAQGEELKKLI---GAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       131 ---------~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~  171 (197)
                               ....+     ++.-+.+++...+++.   +..|+|.+|+..|+|++-+-
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence                     11111     1222344544444443   56789999999999987543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.92  E-value=1.1e-08  Score=80.09  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=65.0

Q ss_pred             cccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      .+....+.++|.+++|+|+.++. +...+ .+|+.....  .++|+++|+||+|+.....          .  ....+..
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~----------~--~~~~~~~  145 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE----------Q--QQWQDRL  145 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH----------H--HHHHHHH
Confidence            33444578999999999999876 33344 667665543  4799999999999964321          1  1112223


Q ss_pred             HHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          149 KLIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       149 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      ...+. +++.+||++++|++++++.+..
T Consensus       146 ~~~g~-~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        146 QQWGY-QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             HhcCC-eEEEEEcCCCCCHHHHhhhhcc
Confidence            45565 7899999999999999988865

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.91  E-value=8.2e-09  Score=79.03  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             ccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           73 PLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+.++|.+++|+|+.++. ++..+ .+|+..+...  ++|+++|+||+|+.....            ......+....
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~~------------~~~~~~~~~~~  137 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDEE------------EELELVEALAL  137 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChHH------------HHHHHHHHHhC
Confidence            34578999999999999998 77777 6787766654  799999999999965311            11122333445


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +. +++.+||+++.|+++++..+..
T Consensus       138 g~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         138 GY-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             CC-eEEEEECCCCccHHHHHhhhcc
Confidence            64 8999999999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.90  E-value=4.5e-09  Score=72.11  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=36.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      +++++|.+|+|||||+|++.+............+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876532111111222233344444   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.90  E-value=4.9e-09  Score=77.49  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             EEEEEEecCC--CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177           55 VNLGLWDTAG--QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN  132 (197)
Q Consensus        55 ~~~~~~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  132 (197)
                      +.+.+++|.|  |.+.     ....-+|.+++|....-.+..+.+..-.++        ++=++|.||.|......    
T Consensus       122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~----  184 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADR----  184 (266)
T ss_dssp             -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHH----
T ss_pred             CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHH----
Confidence            5566788876  3332     123558999999988776655544221211        24578889999765432    


Q ss_pred             CCCCCCccHHHHHHHHHHc------CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          133 HPGATPITTAQGEELKKLI------GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                             ...+........      ..+|++.+||.+++|++++++.|.+..
T Consensus       185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence                   122222222211      236899999999999999999998744

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=6.4e-08  Score=74.97  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCCceeeeeeEEEEE--CCeEEEEEEEecCCCcCcc-------
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYN-------   69 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~-------   69 (197)
                      .|.++++|++|.|||||+|.|+...+..+        ....+...-...+.+  +|..+.+++.||||--+.-       
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            58999999999999999999988644332        111111111222223  5667889999999943321       


Q ss_pred             ------------------cccccCcC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           70 ------------------RLRPLSYR--GADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        70 ------------------~~~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                                        ...+..+.  ..|++++.+..+... ..-+  -.++..+..   .+.+|-|.-|+|.....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~~---~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLSK---KVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHhc---cccccceeeccccCCHH
Confidence                              11111222  678999999877652 2222  234455554   45566666799986543

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.88  E-value=3.5e-08  Score=75.98  Aligned_cols=119  Identities=19%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc---
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR---   70 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---   70 (197)
                      ...+.|+++|++|.|||||+|.|++.....+.          .++. ...+...+.=++..+.++++||||--++-.   
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            34799999999999999999999986432221          1222 122222333356778899999999433211   


Q ss_pred             ccc-----------cC------------c--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           71 LRP-----------LS------------Y--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        71 ~~~-----------~~------------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .|.           .+            +  ...|++++.+.++... +..+.-..+..+...   +=+|=|+.|+|..-
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~~---vNlIPVI~KaD~lT  176 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSKR---VNLIPVIAKADTLT  176 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhcc---cCeeeeeeccccCC
Confidence            110           01            1  2478999999876542 222212444555554   44555557999865


Q ss_pred             ch
Q 029177          126 DK  127 (197)
Q Consensus       126 ~~  127 (197)
                      ..
T Consensus       177 ~~  178 (373)
T COG5019         177 DD  178 (373)
T ss_pred             HH
Confidence            43

>PRK12288 GTPase RsgA; Reviewed

Probab=98.83  E-value=3.8e-08  Score=77.06  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..++|.+++|++.+...++..+ .+|+.....  .++|.++|+||+|+.....         ...........+..+. +
T Consensus       118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~  184 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R  184 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence            4579999999999888888888 788766553  3789999999999965321         0011222233345565 8


Q ss_pred             EEEecccCCCCHHHHHHHHHHH
Q 029177          156 YIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++.+||++++|+++++..+...
T Consensus       185 v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        185 VLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEEeCCCCcCHHHHHHHHhhC
Confidence            9999999999999999998753

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=1.2e-08  Score=80.58  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=68.6

Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .++|..+...+.+.++++++|+|+.+...      .|...+.+...+.|+++|+||+|+....           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            34677777778889999999999977542      2333333333468999999999996532           233333


Q ss_pred             H----HHHHHcCCc--EEEEecccCCCCHHHHHHHHHHH
Q 029177          145 E----ELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       145 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .    ++++..+..  .++.+||++++|++++++.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    345556642  48899999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.81  E-value=6.4e-09  Score=78.65  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcC---------cccccccCcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSYRG   78 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~   78 (197)
                      -|.++|-.|+|||||+++|......+.. ...+.+.........+. -.+.+.||-|.-.         |++.. .-...
T Consensus       180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeVae  257 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEVAE  257 (410)
T ss_pred             eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHHhh
Confidence            5899999999999999999975543332 22333333333333332 3456889998422         11111 12357


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYA-PTVP----IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +|.++.|.|+++|+--... ...+..++..- ++.|    ++=|-||.|......           .       ...++ 
T Consensus       258 adlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E~n~-  317 (410)
T KOG0410|consen  258 ADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EEKNL-  317 (410)
T ss_pred             cceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------cccCC-
Confidence            8999999999999754444 44445555442 2333    345667777754321           1       11122 


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                        -+.+||++|+|++++.+++-......
T Consensus       318 --~v~isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  318 --DVGISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             --ccccccccCccHHHHHHHHHHHhhhh
Confidence              46789999999999999887766433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.77  E-value=2.5e-08  Score=70.57  Aligned_cols=53  Identities=23%  Similarity=0.219  Sum_probs=35.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      .++++++|.||+|||||+|++.+... .... .+++..  ...+..+.   .++++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence            47999999999999999999998543 2222 222221  22223332   467999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=5e-08  Score=68.13  Aligned_cols=90  Identities=13%  Similarity=0.049  Sum_probs=59.0

Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .+..+|++++|+|++++..-..  ..+...+.....+.|+++|+||+|+.....          . ......+...+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~----------~-~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV----------T-ARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH----------H-HHHHHHHhcCCcE-
Confidence            4678999999999998743222  233444443334689999999999954321          1 1112222222222 


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHH
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ..+.+||+++.|++++.+.+.+..
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357799999999999999998754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=3.2e-08  Score=69.12  Aligned_cols=54  Identities=17%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      +.++|+++|.||||||||+|++.+....  ....+++..  ...+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999885431  222222221  11222222   256999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.75  E-value=2.5e-08  Score=77.16  Aligned_cols=171  Identities=17%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeeeeE---------EEEE------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNFSA---------NVVV------------   50 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~--------------~~~~~~---------~~~~------------   50 (197)
                      ..+.+.+.|+-+.|||||+-.|..++..+..-.+.              ....+.         .+..            
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v  195 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV  195 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence            46789999999999999998887765533211110              000000         0111            


Q ss_pred             -CCeEEEEEEEecCCCcCccccc--ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           51 -DGSTVNLGLWDTAGQEDYNRLR--PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        51 -~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                       ....-.+.|.|+.||+.|....  ..+=+..|..++++-+++.-+.-.-  .-+......  .+|++++.||+|+..+.
T Consensus       196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk--EHLgi~~a~--~lPviVvvTK~D~~~dd  271 (527)
T COG5258         196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK--EHLGIALAM--ELPVIVVVTKIDMVPDD  271 (527)
T ss_pred             hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh--Hhhhhhhhh--cCCEEEEEEecccCcHH
Confidence             0112346699999999875432  2334678999999999887654442  222222222  78999999999998764


Q ss_pred             hhh---------cCCCCCCC--c-cHHH----HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          128 QYL---------INHPGATP--I-TTAQ----GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       128 ~~~---------~~~~~~~~--~-~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ...         +.-...-+  + ....    +.......+..|+|.+|+.+|+|++-+.+ +...+...
T Consensus       272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~r  340 (527)
T COG5258         272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPKR  340 (527)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCcc
Confidence            321         00000000  0 0011    11222233467999999999999875444 44444333

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=4.5e-08  Score=75.42  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCce--eeeeeEEEEEC------Ce----------------------------
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVD------GS----------------------------   53 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~------~~----------------------------   53 (197)
                      |+++|.-..|||||++-|+...++....+..  .+.+...+.-+      |.                            
T Consensus        61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq  140 (532)
T KOG1954|consen   61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ  140 (532)
T ss_pred             EEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhc
Confidence            8899999999999999999988865433222  22222222111      11                            


Q ss_pred             -----EEEEEEEecCCCc-----------CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 029177           54 -----TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLV  117 (197)
Q Consensus        54 -----~~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv  117 (197)
                           .-.+.++||||.-           +|.....++...+|.++++||+...+--++. ...+..++.+.  --+-||
T Consensus       141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~E--dkiRVV  217 (532)
T KOG1954|consen  141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGHE--DKIRVV  217 (532)
T ss_pred             CChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCCc--ceeEEE
Confidence                 1236689999932           2344566677899999999999887766666 66777777764  345566


Q ss_pred             eeCCCcccchh
Q 029177          118 GTKQDLREDKQ  128 (197)
Q Consensus       118 ~nK~D~~~~~~  128 (197)
                      .||.|..+..+
T Consensus       218 LNKADqVdtqq  228 (532)
T KOG1954|consen  218 LNKADQVDTQQ  228 (532)
T ss_pred             eccccccCHHH
Confidence            79999977543

>cd01856 YlqF YlqF

Probab=98.72  E-value=4.4e-08  Score=69.41  Aligned_cols=56  Identities=23%  Similarity=0.274  Sum_probs=37.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ..++++++|.+|+|||||+|++.+..+.. ...+.+ +.....+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~-T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGV-TKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCE-EeeeEEEEec---CCEEEEECCCC
Confidence            35799999999999999999999876522 111111 1222223333   34679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.67  E-value=8.5e-08  Score=73.12  Aligned_cols=55  Identities=22%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-T-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ..++++++|.||||||||+|+|.+.... . ....++.  ....+.+..   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999976432 1 2222221  122333433   4579999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.64  E-value=3e-07  Score=64.09  Aligned_cols=83  Identities=16%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           80 DVFLLAFSLISKASYENISKKWI-PELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      |++++|+|+.++.+....  .+. ..+..  .+.|+++|+||+|+.....          + ......+....+ .+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEEE
Confidence            689999999988665442  222 22222  3789999999999954221          1 011112322233 46889


Q ss_pred             ecccCCCCHHHHHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +||+++.|++++.+.+.+..
T Consensus        65 vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EeccCCcChhhHHHHHHHHh
Confidence            99999999999999987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.63  E-value=1.5e-07  Score=72.12  Aligned_cols=57  Identities=25%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      ..++++++|.||||||||+|+|.+... .....+.++ .....+..++   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T-~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT-KAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE-EEEEEEEeCC---cEEEEECCCcC
Confidence            458999999999999999999998653 222222221 1122233333   46799999974

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.62  E-value=3.7e-07  Score=66.60  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------CCCceeeee--eEEEEECCeEEEEEEEecCCCcCc---
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTD--------YVPTVFDNF--SANVVVDGSTVNLGLWDTAGQEDY---   68 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~---   68 (197)
                      |..--.|+|+|||.+|.|||||+|.++......+        ..+.+....  ...+.-++-...++++||||--+.   
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            3444579999999999999999999986332221        111112211  222233566688999999994322   


Q ss_pred             ccccc-----------------------cCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177           69 NRLRP-----------------------LSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDL  123 (197)
Q Consensus        69 ~~~~~-----------------------~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  123 (197)
                      ...|.                       ..+  ...|.+++.+..+.. ++..+.-.+++.+.+.   +-++-|+-|+|.
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v---vNvvPVIakaDt  196 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV---VNVVPVIAKADT  196 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh---heeeeeEeeccc
Confidence            11111                       111  246788888877654 3333323444555544   234444568885


Q ss_pred             c
Q 029177          124 R  124 (197)
Q Consensus       124 ~  124 (197)
                      .
T Consensus       197 l  197 (336)
T KOG1547|consen  197 L  197 (336)
T ss_pred             c
Confidence            3

>cd01859 MJ1464 MJ1464

Probab=98.61  E-value=1.7e-07  Score=65.31  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEecCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG   64 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g   64 (197)
                      ...+++++|.+|+|||||++++.+... ....++......... ..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            457899999999999999999997542 222223222222222 2222   578999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.60  E-value=2.3e-07  Score=72.72  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=57.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~   70 (197)
                      +++.++|.|++|||||.+.+++...  ...|..++.......+.+.+.               ...+++.|+||...-.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999998654  234555544444444555442               13678999999654222


Q ss_pred             -------ccccCcCCCcEEEEEEECC
Q 029177           71 -------LRPLSYRGADVFLLAFSLI   89 (197)
Q Consensus        71 -------~~~~~~~~~~~~i~v~d~~   89 (197)
                             .....++++|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                   1222368899999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.59  E-value=5.6e-06  Score=56.98  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=81.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecC-CCcCccc---------------
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA-GQEDYNR---------------   70 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~~~~~~---------------   70 (197)
                      .+||.+-|+|||||||++.++.+.--...  -...-.+...+.-+++..-|.+.|+. |...+.+               
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            58999999999999999988765321111  22344556666677777888888877 3221110               


Q ss_pred             ----------ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCc
Q 029177           71 ----------LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPI  139 (197)
Q Consensus        71 ----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  139 (197)
                                .....++.||++  ++|=--+-.+..  ..+...+.... .+.|++.+.-+.+...              
T Consensus        83 v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P--------------  144 (179)
T COG1618          83 VEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP--------------  144 (179)
T ss_pred             HHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh--------------
Confidence                      011123445644  445333333222  34555555444 4678777665554311              


Q ss_pred             cHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          140 TTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          ..+-.+..+...+|    .+.+|-+.+++.+...+
T Consensus       145 ----~v~~ik~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         145 ----LVQRIKKLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             ----HHHHhhhcCCEEEE----EccchhhHHHHHHHHHh
Confidence                12333444442333    66777778888888765

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.56  E-value=2.6e-07  Score=63.33  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .+..+|++++|+|+.++.+...  ..+...+....++.|+++|+||+|+..+..            .....+..+..+. 
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~~------------~~~~~~~~~~~~~-   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEEQ------------RKAWAEYFKKEGI-   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHHH------------HHHHHHHHHhcCC-
Confidence            4678999999999998866443  123333332225789999999999954321            1233344445554 


Q ss_pred             EEEEecccCCCC
Q 029177          155 VYIECSSKTQQN  166 (197)
Q Consensus       155 ~~~~~Sa~~~~~  166 (197)
                      +++.+||.++++
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            789999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.55  E-value=6.3e-08  Score=67.24  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC------C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      .++++|++|||||||+|.|....-..      . ..+...+....-+.+++.   -.++||||-..+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            58899999999999999999863211      1 111112233333444332   2489999976643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01855 YqeH YqeH

Probab=98.55  E-value=1.9e-07  Score=67.25  Aligned_cols=52  Identities=25%  Similarity=0.377  Sum_probs=34.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC---------CCCCCC-ceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF---------PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      .+++++|.+|+|||||+|.|.....         ..+..+ ++..  ...+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence            5799999999999999999997432         112222 2222  22233332   467999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.5e-07  Score=76.58  Aligned_cols=117  Identities=16%  Similarity=0.100  Sum_probs=78.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-CCCC-----CCCCceeee-----------eeEEEEECCeEEEEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPT-----DYVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~~g~~~~   68 (197)
                      +.=+|.++-+-.+||||+-++.+.. ....     ....++.+.           -+.-.......+.+.++|||||-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3446888888999999999987752 1100     000111111           1111111223578889999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      .-.....++-.|++++++|....-.-... .-|.+.- ++  ++|.+.+.||+|.-..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-ry--~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-RY--NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-hc--CCCeEEEEehhhhcCC
Confidence            99999999999999999998876555554 4565443 33  7999999999996654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=7.8e-07  Score=72.28  Aligned_cols=142  Identities=18%  Similarity=0.119  Sum_probs=87.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      -++-++|+|+||.|||||++.|..+- ...   ++.+.......+.++...++|.++|.  +..++. ...+-||.++++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~-tk~---ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRF-TKQ---TIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHH-HHh---hhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence            46889999999999999998887642 111   11111122224567778999999984  333222 234568999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|.+-.-..+.  ..|+..+..+  +.|- +-|+|..|+..+....     ....-...-+-|..-+....+|.+|-..
T Consensus       141 IdgnfGfEMET--mEFLnil~~H--GmPrvlgV~ThlDlfk~~stL-----r~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         141 IDGNFGFEMET--MEFLNILISH--GMPRVLGVVTHLDLFKNPSTL-----RSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eccccCceehH--HHHHHHHhhc--CCCceEEEEeecccccChHHH-----HHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99876544444  3566777766  5664 5688999998654200     0000001124455666555788887764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.50  E-value=1.9e-07  Score=73.21  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCC-CCCCC------ceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFP-TDYVP------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ++++|.+|||||||+|+|.+.... ....+      ..++....-+.+.+.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            789999999999999999975321 11111      111222222333322   1389999987754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.50  E-value=4.4e-07  Score=63.24  Aligned_cols=54  Identities=22%  Similarity=0.255  Sum_probs=35.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      ...+++++|.+|+|||||+|.+.+... .. ....++.....  ...+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            457899999999999999999998542 22 22233322221  2222   2467999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=7.1e-07  Score=68.23  Aligned_cols=167  Identities=17%  Similarity=0.155  Sum_probs=100.2

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC----------CCCC-----CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN----------TFPT-----DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   71 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~----------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   71 (197)
                      .++|.-||+-.-|||||...+..-          .|.+     +......+.-..++.++-.....-=.|+|||.+|-..
T Consensus        54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN  133 (449)
T KOG0460|consen   54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN  133 (449)
T ss_pred             cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence            578999999999999999776531          1110     1111112222333333333334446899999999776


Q ss_pred             cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .-.-..+.|++|+|+.++|..-...-.+.+   +.+...-..++++.||.|+.++.+       ....-+-+.+++...+
T Consensus       134 MItGaaqMDGaILVVaatDG~MPQTrEHlL---LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElLse~  203 (449)
T KOG0460|consen  134 MITGAAQMDGAILVVAATDGPMPQTREHLL---LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELLSEF  203 (449)
T ss_pred             hhcCccccCceEEEEEcCCCCCcchHHHHH---HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHHHHc
Confidence            666677899999999999975544431111   112221235788889999985543       1123445677888877


Q ss_pred             CC----cEEEEeccc---CCCC-------HHHHHHHHHHHHcCCCC
Q 029177          152 GA----AVYIECSSK---TQQN-------VKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       152 ~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~~~~~  183 (197)
                      +.    .|++.-||.   ++.+       |..+++++-.++..+.+
T Consensus       204 gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R  249 (449)
T KOG0460|consen  204 GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER  249 (449)
T ss_pred             CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence            63    578876665   3422       45555555555544443

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.49  E-value=3.3e-07  Score=71.27  Aligned_cols=57  Identities=25%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      ..++++++|-||||||||||+|.+.... ....|. .+.....+.++..   +.++||||--
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG-~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG-TTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc-eecceEEEEcCCC---eEEecCCCcC
Confidence            3578999999999999999999996541 222221 2222233344442   6799999953

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.49  E-value=3e-07  Score=70.12  Aligned_cols=100  Identities=20%  Similarity=0.101  Sum_probs=64.7

Q ss_pred             cCCCcC-cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177           62 TAGQED-YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT  140 (197)
Q Consensus        62 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  140 (197)
                      .|||-. ........+..+|++++|+|+.++.+....  .+...+    .+.|+++|.||+|+.+...           .
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~-----------~   66 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV-----------T   66 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH-----------H
Confidence            355532 223344567899999999999877554332  222333    2579999999999954211           1


Q ss_pred             HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                       ....+.....+. +++.+||+++.|++++.+.+.+.+..
T Consensus        67 -~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        67 -KQWLKYFEEKGI-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             -HHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence             111111222343 78999999999999999999887643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.49  E-value=8.8e-07  Score=67.66  Aligned_cols=85  Identities=20%  Similarity=0.155  Sum_probs=59.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECC---------------eEEEEEEEecCCCcCcc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDG---------------STVNLGLWDTAGQEDYN   69 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~~   69 (197)
                      ..+++.+||.|+||||||.|.+...... .+++-++.+.-...+.+.+               ....++++|++|...-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            4679999999999999999999986554 4454455555555554432               23578999999965432


Q ss_pred             cc-------cccCcCCCcEEEEEEECCC
Q 029177           70 RL-------RPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        70 ~~-------~~~~~~~~~~~i~v~d~~~   90 (197)
                      +.       ....++.+|+++-|+++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence            21       2223678999999888754

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=6.2e-07  Score=74.77  Aligned_cols=114  Identities=15%  Similarity=0.083  Sum_probs=75.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC---------CCC----ceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVP----TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ...-+++++.+-.-|||||...|...  .....         +..    ...+--+..+..--+.+.+.++|+|||-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            44567999999999999999888742  11110         000    0011111112222245788899999999999


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD  122 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  122 (197)
                      +......+-+|++++++|+...-..... ..+++. ..  .+...++|.||+|
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~-~~--~~~~~~lvinkid  135 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQA-WI--EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHH-HH--ccCceEEEEehhh
Confidence            9999999999999999999876544443 222222 11  2567888999999

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.45  E-value=1.3e-05  Score=63.34  Aligned_cols=155  Identities=17%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-----------------CCCCCCCCce----eeee----eEEEEE-CCeEEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-----------------TFPTDYVPTV----FDNF----SANVVV-DGSTVNLGL   59 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-----------------~~~~~~~~~~----~~~~----~~~~~~-~~~~~~~~~   59 (197)
                      ..+=|.||||..+|||||+.||..-                 .++.+..+.+    ...+    ...+.+ ++-.+.+++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3467899999999999999999742                 2222222221    1111    123444 466789999


Q ss_pred             EecCC--------CcC--cccc--cccC-----------------cCC--CcEEEEEEECC----ChhhHHHHHHHHHHH
Q 029177           60 WDTAG--------QED--YNRL--RPLS-----------------YRG--ADVFLLAFSLI----SKASYENISKKWIPE  104 (197)
Q Consensus        60 ~D~~g--------~~~--~~~~--~~~~-----------------~~~--~~~~i~v~d~~----~~~s~~~~~~~~~~~  104 (197)
                      .|+-|        +.+  -..+  ++++                 ++.  -=++++.-|.+    .++++..+..+..+.
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            99887        111  0000  1111                 111  12455544443    256777777888888


Q ss_pred             HhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC--CCCHHHHHHHHH
Q 029177          105 LRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT--QQNVKTVFDAAI  175 (197)
Q Consensus       105 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~  175 (197)
                      |+..  +.|++++.|-.+-...            -..+.+.++..+|+. |.+.+++.+  .+.+..++..+.
T Consensus       176 Lk~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  176 LKEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence            8887  8999999998775432            345667788888997 788877664  355555555544

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01856 YlqF YlqF

Probab=98.43  E-value=1.2e-06  Score=61.98  Aligned_cols=88  Identities=19%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           72 RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ....+.++|++++|+|++++......  .+...+    .+.|+++|+||+|+.....          .  ....++.+..
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~----------~--~~~~~~~~~~   74 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK----------T--KKWLKYFESK   74 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH----------H--HHHHHHHHhc
Confidence            34457889999999999877553322  122222    3579999999999954211          1  1111222222


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      + ..++.+||++++|++++...+...+
T Consensus        75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          75 G-EKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             C-CeEEEEECCCcccHHHHHHHHHHHH
Confidence            3 3689999999999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.42  E-value=4.6e-06  Score=61.66  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc-------ccccCcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGA   79 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~   79 (197)
                      -+|.++|-|.+||||++..+.+..- ..+|..++-.........++  -.+++.|.||..+-..       ..-...+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999887532 23454554444333344455  5788999999543221       122235779


Q ss_pred             cEEEEEEECCChhhHH
Q 029177           80 DVFLLAFSLISKASYE   95 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~   95 (197)
                      +.+++|.|+-.+-+-.
T Consensus       138 nli~~vld~~kp~~hk  153 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHK  153 (358)
T ss_pred             cEEEEEeeccCcccHH
Confidence            9999999998765433

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.42  E-value=4.3e-06  Score=66.94  Aligned_cols=124  Identities=16%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENISKKWIPELRHYA-PTVPIVLVGTKQDL  123 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~  123 (197)
                      ..+.++|++|+...+..|.+++.++++++||+++++.+          .+.+....|...+.... .+.|++|+.||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            57789999999999999999999999999999987643          24444355655555443 68999999999997


Q ss_pred             ccchhhhc------CCCC-CC-CccHHHHHHHHHHc-----------CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          124 REDKQYLI------NHPG-AT-PITTAQGEELKKLI-----------GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       124 ~~~~~~~~------~~~~-~~-~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ....-...      .+.. .. .-..+.+..+....           ..+.+..++|.+.+.++.+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            75421110      1111 11 13344555444321           222455799999999999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=7.9e-08  Score=75.22  Aligned_cols=117  Identities=16%  Similarity=0.093  Sum_probs=86.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc--CCC------CCC---------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS--NTF------PTD---------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~--~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   68 (197)
                      +.-+|.++.+-.+||||...|++.  +..      .+.         ......+..+..+.++.+.+.+.++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            344789999999999999999875  111      110         001112223444556666788999999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +-....+++-.|+++.|||.+-.-....+ ..|.+.-+-   ++|-+.+.||+|....
T Consensus       116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhhh
Confidence            99999999999999999999987776666 667654332   6899999999998764

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=7.9e-06  Score=67.70  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeE---------------------------------------
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSA---------------------------------------   46 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~---------------------------------------   46 (197)
                      ..||++.|..++||||++|+++..+..++... ++..+...                                       
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~  188 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA  188 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence            57999999999999999999987554333222 21111100                                       


Q ss_pred             ----EEEECCeE-----EEEEEEecCCCcC---cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE
Q 029177           47 ----NVVVDGST-----VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI  114 (197)
Q Consensus        47 ----~~~~~~~~-----~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~  114 (197)
                          .+.+++..     =.+.+.|.||..-   ..+-...+...+|++|+|.++.+.-+..+  +.++....+.  ..-+
T Consensus       189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kpni  264 (749)
T KOG0448|consen  189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KPNI  264 (749)
T ss_pred             ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CCcE
Confidence                00011110     0345678888542   22333344568999999999888777666  4555555543  3335


Q ss_pred             EEEeeCCCcccc
Q 029177          115 VLVGTKQDLRED  126 (197)
Q Consensus       115 iiv~nK~D~~~~  126 (197)
                      .|+-||.|...+
T Consensus       265 FIlnnkwDasas  276 (749)
T KOG0448|consen  265 FILNNKWDASAS  276 (749)
T ss_pred             EEEechhhhhcc
Confidence            566688898754

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=3.5e-06  Score=66.72  Aligned_cols=84  Identities=20%  Similarity=0.385  Sum_probs=57.0

Q ss_pred             CCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH----HHHHHc
Q 029177           77 RGAD-VFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE----ELKKLI  151 (197)
Q Consensus        77 ~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  151 (197)
                      ...+ .+++|+|+.|...      .|...+.+...+.|+++|+||+|+....           ...+...    .+++..
T Consensus        67 ~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence            3444 8899999987432      2333444433478999999999996421           2223333    334555


Q ss_pred             CCc--EEEEecccCCCCHHHHHHHHHHH
Q 029177          152 GAA--VYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       152 ~~~--~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +..  .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            542  57899999999999999999765

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.34  E-value=3.7e-06  Score=62.19  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcccc------cc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--YVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~------~~   73 (197)
                      ....-|+|+|++++|||+|+|++++.  .|...  ..+++........... +....+.++||+|.......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567999999999999999999998  66322  2233322222111121 23367889999997543221      11


Q ss_pred             cCcCC--CcEEEEEEECCChh
Q 029177           74 LSYRG--ADVFLLAFSLISKA   92 (197)
Q Consensus        74 ~~~~~--~~~~i~v~d~~~~~   92 (197)
                      ..+..  ++++|+..+.+...
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            12222  67777777665443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK12289 GTPase RsgA; Reviewed

Probab=98.32  E-value=7.4e-07  Score=69.94  Aligned_cols=56  Identities=16%  Similarity=0.101  Sum_probs=33.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCC--CCCC-----ceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPT--DYVP-----TVFDNFSANVVVDGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   68 (197)
                      ++++|.+|||||||+|+|.......  ....     ..++....-+.+.+..   .++||||-..+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            7999999999999999999743211  1111     1112222223343322   58999997653

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2.6e-05  Score=57.51  Aligned_cols=166  Identities=16%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             EEEEECCCCC--CHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCC-CcCcccccccCcCCCcEEEE
Q 029177            9 KCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG-QEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         9 ki~vvG~~~~--GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g-~~~~~~~~~~~~~~~~~~i~   84 (197)
                      -++|+|.+||  ||.+++.+|....|.++..+.. ...+..++........+.+.-.+- .+.+.. ......-..++++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~vm   84 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFVM   84 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEEE
Confidence            3678999999  9999999999887765543332 333333322211111122221111 111111 1112234568899


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccch-------hhh--------------------------
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDK-------QYL--------------------------  130 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-------~~~--------------------------  130 (197)
                      +||.+..+.+..+ ..|+.-....  ... ++.++||.|....+       .+.                          
T Consensus        85 vfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   85 VFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999999999998 8887543322  222 35678999976431       111                          


Q ss_pred             -cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC------------CCCHHHHHHHHHHHHc
Q 029177          131 -INHPGATPITTAQGEELKKLIGAAVYIECSSKT------------QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~~~~  179 (197)
                       ..++.........+++|+.+.++ .+++.++.+            ..|++.+|.++-..+.
T Consensus       162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence             01112222334567889999997 899988843            3588888888876553

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.31  E-value=8e-07  Score=66.58  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|.+|||||||+|+|.+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhh
Confidence            5889999999999999999975

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.30  E-value=7.9e-06  Score=63.54  Aligned_cols=69  Identities=20%  Similarity=0.194  Sum_probs=40.9

Q ss_pred             EEEEEEecCCCcCcccccccCc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                      -.++|+|.+||+.|....-.-.  +-.|..++++-++-.-- -.. +.-+...-.  -++|+.+|.+|+|+...+
T Consensus       219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmT-KEHLgLALa--L~VPVfvVVTKIDMCPAN  289 (641)
T KOG0463|consen  219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMT-KEHLGLALA--LHVPVFVVVTKIDMCPAN  289 (641)
T ss_pred             eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-ecc-HHhhhhhhh--hcCcEEEEEEeeccCcHH
Confidence            4578999999999876533222  34577777766543211 001 111111111  168999999999988654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.30  E-value=1e-06  Score=67.59  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc------eeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPT------VFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      -.++++|++|+|||||+|.|.+....... .+.      ..+.....+...+.   ..++|+||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            36899999999999999999985332111 110      01111222333321   2489999987653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.25  E-value=7e-06  Score=63.00  Aligned_cols=99  Identities=22%  Similarity=0.150  Sum_probs=64.4

Q ss_pred             cCCCcC-cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177           62 TAGQED-YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT  140 (197)
Q Consensus        62 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  140 (197)
                      .|||-. ........+..+|++++|+|+.++.+....  .+...+.    +.|+++|.||+|+.+...            
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~----~kp~iiVlNK~DL~~~~~------------   68 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG----NKPRLLILNKSDLADPEV------------   68 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC----CCCEEEEEEchhcCCHHH------------
Confidence            466532 222344567899999999999887654332  2223322    689999999999954211            


Q ss_pred             HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .+...+..++.+. +++.+||+++.|++++.+.+...+.
T Consensus        69 ~~~~~~~~~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         69 TKKWIEYFEEQGI-KALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            1111122223343 7899999999999999999888764

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.25  E-value=5.8e-06  Score=74.53  Aligned_cols=110  Identities=24%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCC--C--c--eeeeeeEEEEECCeEEEEEEEecCCCcCc--------ccccccC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYV--P--T--VFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLS   75 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~--~--~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~   75 (197)
                      .+|||++|+||||++++- +-.++-...  .  +  ......-...+.+   .-.++|++|..-.        ...|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999876 333322110  0  0  0000000111222   2348999994311        1224433


Q ss_pred             c---------CCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcc
Q 029177           76 Y---------RGADVFLLAFSLISKAS---------YENISKKWIPELRHYA-PTVPIVLVGTKQDLR  124 (197)
Q Consensus        76 ~---------~~~~~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~  124 (197)
                      +         +-.|++|+++|+.+--.         ...+ ...++.+.... -++||.++.||+|+.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            3         34799999999876432         1122 22234444443 589999999999976

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.24  E-value=2.5e-06  Score=64.72  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=36.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC------CCCCC-CCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~------~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~   69 (197)
                      -.+++|.+|||||||+|+|....      ..... .+..++....-+.++ +.    .+.||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence            47889999999999999998632      11111 222234444445553 32    279999987654

>PRK01889 GTPase RsgA; Reviewed

Probab=98.24  E-value=1.2e-05  Score=63.58  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=58.8

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..++|.+++|+++...-+...+ ++++..+...  ++|.+||+||+|+.++..             +....+.......+
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~-------------~~~~~~~~~~~g~~  173 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAE-------------EKIAEVEALAPGVP  173 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHH-------------HHHHHHHHhCCCCc
Confidence            5789999999999754444444 6666666654  788899999999965311             11122222222348


Q ss_pred             EEEecccCCCCHHHHHHHHH
Q 029177          156 YIECSSKTQQNVKTVFDAAI  175 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~  175 (197)
                      ++.+|+++++|++++..++.
T Consensus       174 Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        174 VLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EEEEECCCCccHHHHHHHhh
Confidence            89999999999999988874

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.23  E-value=1.2e-05  Score=62.45  Aligned_cols=95  Identities=11%  Similarity=0.030  Sum_probs=54.8

Q ss_pred             EEEEEEEecCCCcCcccc-----------c-ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177           54 TVNLGLWDTAGQEDYNRL-----------R-PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ  121 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~-----------~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  121 (197)
                      .+.+.++||||.......           . ...-...+..++|.|++....  .+ ... ....+.  --+--+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~-~~a-~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--AL-SQA-KAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HH-HHH-HHHHhh--CCCCEEEEECC
Confidence            367889999997543221           0 011134678899999985432  22 111 111111  12346788999


Q ss_pred             CcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177          122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  171 (197)
                      |....              .-.+..+....+. |+..++  +|++++++-
T Consensus       270 D~t~~--------------~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAK--------------GGVVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCC--------------ccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            96432              2234566677776 777776  788886653

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.18  E-value=3.1e-06  Score=66.95  Aligned_cols=55  Identities=24%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC------CC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF------PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      .++.++|.+|||||||+|++.+...      .. ....++...  ..+.+++   .+.++||||-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence            3799999999999999999997432      11 222222221  1233322   245999999654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.17  E-value=2.9e-06  Score=65.40  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|++|||||||+|.|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998753

>PRK14974 cell division protein FtsY; Provisional

Probab=98.16  E-value=6.5e-06  Score=64.22  Aligned_cols=94  Identities=13%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             EEEEEEecCCCcCccccc----ccC--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177           55 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ  128 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  128 (197)
                      +.+.++||+|........    ..+  .-+.|.+++|.|++...........|...+     + +--++.||.|....- 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-----~-~~giIlTKlD~~~~~-  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-----G-IDGVILTKVDADAKG-  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-----C-CCEEEEeeecCCCCc-
Confidence            568899999976432111    111  125788899999876543222212222111     1 235678999986532 


Q ss_pred             hhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177          129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  171 (197)
                                   -.+..++...+. |+..++  +|++++++.
T Consensus       296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             -------------cHHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence                         233455555665 677776  788887664

>PRK13796 GTPase YqeH; Provisional

Probab=98.15  E-value=4.8e-06  Score=65.99  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      -++.++|.+|||||||+|+|.....       ......|+..  ...+.+++.   ..++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCcc
Confidence            3789999999999999999986431       1122222222  122333332   3599999964

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.15  E-value=9e-06  Score=61.82  Aligned_cols=95  Identities=12%  Similarity=0.029  Sum_probs=55.2

Q ss_pred             EEEEEEEecCCCcCccccc------------ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177           54 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ  121 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  121 (197)
                      .+.+.++||||........            ...-..+|..++|+|++...  +.. ... ..+.+..  -+--+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~-~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQA-KVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHH-HHHHhhC--CCCEEEEEcc
Confidence            3678899999976432211            01123478999999997532  222 111 2222211  1346788999


Q ss_pred             CcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177          122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  171 (197)
                      |.....              -.+..+....+. |+..++  +|++++++-
T Consensus       228 De~~~~--------------G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKG--------------GIILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCc--------------cHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            986532              234555666675 677776  778776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.13  E-value=6.3e-05  Score=61.32  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             EEEEEecCCCcC-------------cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 029177           56 NLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQ  121 (197)
Q Consensus        56 ~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~  121 (197)
                      .+.+.|.||...             ...+...+..+.+++|+|+--..-+.-...   .-+.+...- .+...|+|.||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn---VTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI---VTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh---HHHHHHhcCCCCCeeEEEEeec
Confidence            456889999432             123345567899999999854333222222   122333222 267889999999


Q ss_pred             CcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177          122 DLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      |+.+.+.          .+++..+....
T Consensus       490 DlAEknl----------A~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAEKNV----------ASPSRIQQIIE  507 (980)
T ss_pred             chhhhcc----------CCHHHHHHHHh
Confidence            9988654          56666665544

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.11  E-value=5.4e-06  Score=60.36  Aligned_cols=127  Identities=15%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhh-CCCCCEEEEeeCCC
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENISKKWIPELRHY-APTVPIVLVGTKQD  122 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D  122 (197)
                      .+.|++.|.+|+...+..|-+++.+.-.+++++..+..+.          -++....+...+.-. +.+.++|++.||-|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            4667788888888888888888887777776666554432          222211222222111 25889999999999


Q ss_pred             cccchhhh------cCCCCCCCccHHHHHHHHHHc-----C----CcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          123 LREDKQYL------INHPGATPITTAQGEELKKLI-----G----AAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +.+.....      .++.....-....+++|....     +    .+--..+.|.+-+||.-+|.++.+.++.
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            98764321      122211122233344443322     1    1111236677789999999998887754

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=4.4e-06  Score=63.17  Aligned_cols=166  Identities=18%  Similarity=0.174  Sum_probs=97.5

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeee----------------------------eEEEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNF----------------------------SANVV   49 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~----------------------------~~~~~   49 (197)
                      +....++|.-+|+.--||||++..+++-   +|-.+...  |+...|                            .....
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            4456799999999999999999877641   11000000  000000                            00111


Q ss_pred             ECCe------EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 029177           50 VDGS------TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENISKKWIPELRHYAPTVPIVLVGT  119 (197)
Q Consensus        50 ~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~n  119 (197)
                      ..+.      ...+-|.|+|||+-.-+....-..-.|++++++..+.    +.+-+.+..   -.+..   -..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa---veiM~---LkhiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA---VEIMK---LKHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH---HHHhh---hceEEEEec
Confidence            1111      1345689999998755443333344577777776544    233333311   11111   246899999


Q ss_pred             CCCcccchhhhcCCCCCCCccHHHHHHHHHHc---CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          120 KQDLREDKQYLINHPGATPITTAQGEELKKLI---GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       120 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      |.|+....+.        ....++.+.|.+..   ++ |++.+||.-+.|++-+.+.|+..+.-+.+
T Consensus       188 KiDli~e~~A--------~eq~e~I~kFi~~t~ae~a-PiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  188 KIDLIKESQA--------LEQHEQIQKFIQGTVAEGA-PIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             hhhhhhHHHH--------HHHHHHHHHHHhccccCCC-ceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence            9999765430        12224444555443   44 89999999999999999999998865543

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.07  E-value=1.7e-05  Score=55.39  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      ++++|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.06  E-value=2.2e-05  Score=62.97  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=38.2

Q ss_pred             EEEEEEEecCCCcCccccc----cc--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           54 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      .+.+.|+||||........    ..  .....+-+++|+|++-.......    ...+.+.  --+--+|.||.|...
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCC
Confidence            3678899999965432110    00  12356789999998755333222    1222221  124567789999864

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13695 putative NTPase; Provisional

Probab=98.05  E-value=0.0001  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+++|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988654

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=9.5e-06  Score=65.26  Aligned_cols=120  Identities=18%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC------------CCCCCCCC---ceeeeeeEEEE----------------
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN------------TFPTDYVP---TVFDNFSANVV----------------   49 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~------------~~~~~~~~---~~~~~~~~~~~----------------   49 (197)
                      |++..+.-++.+|.+..-|||||...|...            +|.+....   ...+.-+.-+.                
T Consensus        13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~   92 (842)
T KOG0469|consen   13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE   92 (842)
T ss_pred             hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence            445555567899999999999999988752            22111000   00000010000                


Q ss_pred             ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      -++..+-+.++|.|||-+|++.....++-.|++++|+|..+.-....- ..+.+.+.+.   +.=+++.||.|..
T Consensus        93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA  163 (842)
T KOG0469|consen   93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA  163 (842)
T ss_pred             CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence            023457788999999999999999999999999999998876554443 3344555543   3335668999954

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.91  E-value=5.7e-05  Score=42.68  Aligned_cols=45  Identities=24%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177           77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQD  122 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  122 (197)
                      +-.++++|++|++..-  +++.. ..++..++..+++.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            3468999999998764  45555 566788888888999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.88  E-value=1.8e-05  Score=63.69  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=39.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      .+.|.+||-|||||||.||.|.+.+-..- ..|. .+.+-.++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            58899999999999999999999765322 2222 344455555555   3458999995

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=3.7e-05  Score=68.33  Aligned_cols=112  Identities=21%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeee-eEEE--EECCeEEEEEEEecCCCcCcc--------cccccC--
Q 029177           10 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNF-SANV--VVDGSTVNLGLWDTAGQEDYN--------RLRPLS--   75 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~-~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~D~~g~~~~~--------~~~~~~--   75 (197)
                      -+|||++|+||||++..--.. .+............ ...+  .+.+   .-.++||+|.....        ..|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            478999999999999432211 11111111110000 1111  1112   34578999843221        123322  


Q ss_pred             -------cCCCcEEEEEEECCChhhHH---------HHHHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 029177           76 -------YRGADVFLLAFSLISKASYE---------NISKKWIPELRHYA-PTVPIVLVGTKQDLRE  125 (197)
Q Consensus        76 -------~~~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~  125 (197)
                             .+-.|++|+.+|+++--+..         .+ ..-++.+.... -..|+.+++||.|+..
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~L-R~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTL-RARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHH-HHHHHHHHHhhccCCceEEEEecccccc
Confidence                   34679999999997643211         12 11133444433 5899999999999875

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.85  E-value=7e-05  Score=60.55  Aligned_cols=64  Identities=19%  Similarity=0.091  Sum_probs=36.7

Q ss_pred             EEEEEEecCCCcCccccc------ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCccc
Q 029177           55 VNLGLWDTAGQEDYNRLR------PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLRE  125 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~  125 (197)
                      ..+.++||+|........      -..+..+|.+++|+|++....  .. . ....+..   .+++ -+|.||.|...
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~--av-~-~a~~F~~---~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ--AK-N-QAKAFHE---AVGIGGIIITKLDGTA  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH--HH-H-HHHHHHh---cCCCCEEEEecccCCC
Confidence            367899999976532110      011335789999999876532  11 1 1122222   2444 46779999754

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.84  E-value=0.00031  Score=53.59  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .+.+....+.|-.++++.+.+|+--..+..+++-.....  ++.-+|+.||+|+.++..          ...++......
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~  138 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYE  138 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHH
Confidence            333444556788888888888875444446776665554  777778899999987543          22134455566


Q ss_pred             HcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          150 LIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       150 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ..+- +.+.+|++++++++++...+...
T Consensus       139 ~~gy-~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         139 DIGY-PVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             hCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence            6775 89999999999999999887654

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.78  E-value=3.3e-05  Score=56.45  Aligned_cols=117  Identities=15%  Similarity=0.043  Sum_probs=59.7

Q ss_pred             EEEEEEecCCCcCccccccc------CcCCCcEEE---EEEEC---CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPL------SYRGADVFL---LAFSL---ISKASYENISKKWIPELRHYA-PTVPIVLVGTKQ  121 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i---~v~d~---~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~  121 (197)
                      -...++|+|||-++...+..      .++..+.=+   -++|.   +++..+...  .+ -.+.... =..|=|=|..|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL-~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LL-VSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HH-HHHHHHHhhcccchhhhhHh
Confidence            45669999999654322111      122233323   33343   566666554  22 2222221 267888888999


Q ss_pred             Ccccchhhh--------------------cCCCCCC--CccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHH
Q 029177          122 DLREDKQYL--------------------INHPGAT--PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA  174 (197)
Q Consensus       122 D~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  174 (197)
                      |+.......                    ...+..+  .--.+..-++...++.+.|...+..+.+++-.+...|
T Consensus       174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I  248 (290)
T KOG1533|consen  174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI  248 (290)
T ss_pred             HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence            987654311                    0011100  1122444556666676666666666666665555544

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.75  E-value=0.00016  Score=49.43  Aligned_cols=107  Identities=15%  Similarity=0.059  Sum_probs=60.9

Q ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC
Q 029177           11 VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        11 ~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (197)
                      +.-|.+|+||||+...+...--. ....+.......  ....-.+.+.++|+|+...  ......+..+|.++++.+.+.
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence            34578999999998655432110 111111000000  0011116788999998532  233456888999999998764


Q ss_pred             hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           91 KASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        91 ~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                       .++... ...++.+.......++.+|.|+.+..
T Consensus        79 -~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence             444444 34445554433456788999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00022  Score=56.51  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.++++|++|+||||++..|..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999988865

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.70  E-value=3.2e-05  Score=51.28  Aligned_cols=22  Identities=14%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.68  E-value=3.8e-05  Score=54.20  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||+|+|++|||||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988763

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=0.00017  Score=54.17  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=42.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE---E--EEECCeEEEEEEEecCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA---N--VVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~D~~g   64 (197)
                      -.|+|+-||..|.|||||+..|++..|.....+........   +  +.-.+-.+.+++.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            36899999999999999999999998865544333221111   1  11235567889999998

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.65  E-value=7.5e-05  Score=54.52  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +..-|+|+|++|+|||||+++|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4566889999999999999999754

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.65  E-value=5.7e-05  Score=54.33  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             CCCEEEEeeCCCcccchhhh-------------cCCCCCCCcc------HHHHHHHHHHcCCcEEEEecccCCCCHHHHH
Q 029177          111 TVPIVLVGTKQDLREDKQYL-------------INHPGATPIT------TAQGEELKKLIGAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       111 ~~p~iiv~nK~D~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  171 (197)
                      .+|-|=|.+|+|+.......             ....+...-+      .....++...++.+.|++....+.++++.++
T Consensus       164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL  243 (273)
T KOG1534|consen  164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL  243 (273)
T ss_pred             cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence            78999999999988652211             0001111111      1234456667888899999999999999998


Q ss_pred             HHHHHHHc
Q 029177          172 DAAIKVVL  179 (197)
Q Consensus       172 ~~i~~~~~  179 (197)
                      ..|-.++.
T Consensus       244 ~~ID~aiQ  251 (273)
T KOG1534|consen  244 SYIDDAIQ  251 (273)
T ss_pred             HHHHHHHH
Confidence            88766553

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.63  E-value=4.9e-05  Score=54.10  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||+|+|+|||||||+..+|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999876

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.62  E-value=6.4e-05  Score=58.85  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=38.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ..+++.|+|-||+||||+||+|..... .....|+ .+..-..+.++.   .+.|.|.||.
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pG-vT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPG-VTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHhccccCCCCcc-chhhhhheeccC---CceeccCCce
Confidence            468999999999999999999998654 2222222 222233344443   5669999995

>PRK07261 topology modulation protein; Provisional

Probab=97.62  E-value=5.1e-05  Score=53.72  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||+|+|++|+|||||.+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999988653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.61  E-value=7e-05  Score=54.74  Aligned_cols=29  Identities=24%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||+ .+...|+|.|++|||||||.+.+...
T Consensus         1 ~~~-~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          1 MMM-KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCC-CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            444 35789999999999999999888764

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.61  E-value=0.00015  Score=54.45  Aligned_cols=93  Identities=6%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--------C
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--------A  153 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  153 (197)
                      ..+++|..+...  ..+..+.......  +.|.+++.-.++...-..+.....  ...+.+....+...+.        .
T Consensus        69 ~~VI~D~~~~~~--~~r~~l~~~ak~~--~~~~~~I~l~~p~e~~~~Rn~~R~--~~~~~~~i~~l~~r~e~p~~~~~wd  142 (249)
T TIGR03574        69 YSVIVDDTNYYN--SMRRDLINIAKEY--NKNYIIIYLKAPLDTLLRRNIERG--EKIPNEVIKDMYEKFDEPGTKYSWD  142 (249)
T ss_pred             CeEEEeccchHH--HHHHHHHHHHHhC--CCCEEEEEecCCHHHHHHHHHhCC--CCCCHHHHHHHHHhhCCCCCCCCcc
Confidence            346677664321  1213333444433  567777766666543322222111  1234444445544332        1


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+.+.+.......++++...+...+..
T Consensus       143 ~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       143 LPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            266777665445778999988886543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00022  Score=56.15  Aligned_cols=164  Identities=13%  Similarity=0.055  Sum_probs=90.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CC----------------------------CCCCCCceeeeeeEEEEECCeE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TF----------------------------PTDYVPTVFDNFSANVVVDGST   54 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~~   54 (197)
                      ...++++++|+..+||||+-..+...  ..                            ..+......+.-.....++-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            45789999999999999998655421  00                            0000000000001111122223


Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccchhhh
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDKQYL  130 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~  130 (197)
                      -.+++.|+|||..|-...-.-..+||..++|+++.-.+-   |+.-- .+=...+.....-...|++.||+|-.....  
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW--  234 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW--  234 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc--
Confidence            577899999999887766666778999999988743321   11110 000111122222457889999999764321  


Q ss_pred             cCCCCCCCccHHHHHHHHHHcC-----CcEEEEecccCCCCHHHHHH
Q 029177          131 INHPGATPITTAQGEELKKLIG-----AAVYIECSSKTQQNVKTVFD  172 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~  172 (197)
                        +.+...-..+....+.+..|     ...++++|..+|.++++.-.
T Consensus       235 --s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 --SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             --chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              00000012233444444332     34688999999999887653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00054  Score=56.44  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=18.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.|+++|+.|+||||++..|..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999977764

>PRK10867 signal recognition particle protein; Provisional

Probab=97.56  E-value=0.00073  Score=54.66  Aligned_cols=83  Identities=14%  Similarity=0.113  Sum_probs=44.8

Q ss_pred             EEEEEEecCCCcCcccc-cc---c--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccch
Q 029177           55 VNLGLWDTAGQEDYNRL-RP---L--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDK  127 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~-~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~  127 (197)
                      +.+.++||+|....... ..   .  ..-..+.+++|+|.+........    ...+..   .+++ -+|.||.|.....
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~----a~~F~~---~~~i~giIlTKlD~~~rg  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT----AKAFNE---ALGLTGVILTKLDGDARG  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH----HHHHHh---hCCCCEEEEeCccCcccc
Confidence            66889999996543211 00   0  01246778999998754322222    222222   2333 4667999975422


Q ss_pred             hhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177          128 QYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                                    -.+.......+. |+..+
T Consensus       257 --------------G~alsi~~~~~~-PI~fi  273 (433)
T PRK10867        257 --------------GAALSIRAVTGK-PIKFI  273 (433)
T ss_pred             --------------cHHHHHHHHHCc-CEEEE
Confidence                          225666666675 54443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.56  E-value=0.00015  Score=51.19  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEec
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT   62 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   62 (197)
                      ||++.|++|+|||||++++...--...  -...-.+...+.-++..+-|.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEEC
Confidence            689999999999999999876321100  1112333444444555566666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.55  E-value=6.2e-05  Score=51.38  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+++|+|||||||+++++...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.54  E-value=0.00039  Score=47.04  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -.+++.|++|+|||++++.+....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999988764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.53  E-value=0.00019  Score=54.66  Aligned_cols=59  Identities=20%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ..+.++|+|.||+|||||+|.+........      ..+.........+.+... -.+++.||||-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence            357899999999999999998765322111      111111112222333222 24679999995

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.52  E-value=0.00011  Score=51.91  Aligned_cols=29  Identities=21%  Similarity=0.161  Sum_probs=24.0

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      |+.....-+.++|.+|+|||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            45555567899999999999999998864

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.52  E-value=0.00094  Score=52.96  Aligned_cols=20  Identities=35%  Similarity=0.388  Sum_probs=16.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      .|++|||.||||||-+-.|-
T Consensus       205 vi~LVGPTGVGKTTTlAKLA  224 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLA  224 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999885543

>TIGR00235 udk uridine kinase

Probab=97.51  E-value=0.00012  Score=53.40  Aligned_cols=28  Identities=21%  Similarity=0.146  Sum_probs=23.8

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      |.+++..-|+++|++|+|||||++.+.+
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            4455667899999999999999998876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14530 adenylate kinase; Provisional

Probab=97.51  E-value=0.0001  Score=54.15  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998864

>TIGR00959 ffh signal recognition particle protein

Probab=97.50  E-value=0.00034  Score=56.50  Aligned_cols=83  Identities=14%  Similarity=0.072  Sum_probs=45.9

Q ss_pred             EEEEEEecCCCcCccccccc------CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccch
Q 029177           55 VNLGLWDTAGQEDYNRLRPL------SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDLREDK  127 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~  127 (197)
                      +.+.++||||........-.      ..-..+.+++|+|++......    .+...+...   +++ =+|.||.|.....
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~---v~i~giIlTKlD~~~~~  255 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNER---LGLTGVVLTKLDGDARG  255 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhh---CCCCEEEEeCccCcccc
Confidence            56889999996543211000      022478889999987543222    222333322   233 4668999965422


Q ss_pred             hhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177          128 QYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                                    -.+..++...+. |+..+
T Consensus       256 --------------G~~lsi~~~~~~-PI~fi  272 (428)
T TIGR00959       256 --------------GAALSVRSVTGK-PIKFI  272 (428)
T ss_pred             --------------cHHHHHHHHHCc-CEEEE
Confidence                          225666777775 55443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.49  E-value=0.0001  Score=53.42  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=19.9

Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+||.+.+-+.|+++.+.+.+..
T Consensus       163 PTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHc
Confidence            39999999999999999887743

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.48  E-value=0.00013  Score=42.19  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..++.|+.|+|||||+..+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999988764

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.47  E-value=0.00086  Score=42.12  Aligned_cols=71  Identities=23%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-cccCcCCCcEEEEEEEC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFLLAFSL   88 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~   88 (197)
                      +++.|.+|+||||+...+...--...+         ....++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999777653211111         111122    5668999986543221 13456678999998887


Q ss_pred             CChhh
Q 029177           89 ISKAS   93 (197)
Q Consensus        89 ~~~~s   93 (197)
                      +....
T Consensus        69 ~~~~~   73 (99)
T cd01983          69 EALAV   73 (99)
T ss_pred             chhhH
Confidence            65533

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.46  E-value=8e-05  Score=52.23  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.45  E-value=0.00015  Score=51.99  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .=|+|+|++|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            44899999999999999999875

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.44  E-value=0.00015  Score=43.26  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.43  E-value=0.00015  Score=53.76  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-...+||+|+|+|||||||+...|..
T Consensus         2 ~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          2 KLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999988865

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.39  E-value=0.00084  Score=47.57  Aligned_cols=44  Identities=20%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      |++++++|+.++.+-..  ..+.+.+.....+.|+++|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence            78999999988744322  233333211123689999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00023  Score=51.78  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||.+..  -|+++|++|+|||||++.+.+.
T Consensus         1 ~~~~g~--~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          1 MMRRGL--LIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCCC--EEEEECCCCCCHHHHHHHHHhh
Confidence            565543  5899999999999999988764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.36  E-value=0.0019  Score=47.46  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=33.4

Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      +...+++|.+++|+|.+-+ ++..+ .+......+. .-.++.+|+||.|..
T Consensus       150 Rg~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~  198 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence            3456789999999998755 44444 4443333333 237899999999975

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.36  E-value=0.00016  Score=53.09  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|+|++|||||||++-+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999888653

>PRK06217 hypothetical protein; Validated

Probab=97.33  E-value=0.0002  Score=51.25  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.30  E-value=0.00023  Score=52.91  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999888764

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK01889 GTPase RsgA; Reviewed

Probab=97.29  E-value=0.00025  Score=56.14  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +++++|.+|+|||||+|.+.+.
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            6899999999999999999874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.29  E-value=0.00022  Score=48.28  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999887653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=2.6e-05  Score=57.73  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe--EEEEEEEecCCCcCcccccccC-----cCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLS-----YRG   78 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~-----~~~   78 (197)
                      ...-|++.|..  ||||+|++++.+.- ....|+....|+......+.  .-...+|+.+|......+..--     ++.
T Consensus        44 ~E~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~  120 (363)
T KOG3929|consen   44 FEFFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT  120 (363)
T ss_pred             ceeEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence            45678888877  45999999988653 23345554444443333332  2245689999976654332222     222


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHH--------------------------Hhhh----C--------CCCCEEEEeeC
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPE--------------------------LRHY----A--------PTVPIVLVGTK  120 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~--------------------------~~~~----~--------~~~p~iiv~nK  120 (197)
                       =.+|++.|.++++.+....+..++.                          +...    .        -.+|++||+.|
T Consensus       121 -~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  121 -FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             -hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence             2567889999986543221211111                          1110    0        14699999999


Q ss_pred             CCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177          121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus       121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      .|....-+     ++++.-...-.+.++..+|+ .....|++
T Consensus       200 YDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSsk  235 (363)
T KOG3929|consen  200 YDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSK  235 (363)
T ss_pred             hhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHh
Confidence            99765321     22222333445666777776 45666666

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.29  E-value=0.00017  Score=51.06  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .=+++.||+|||||||+++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999998864

>PRK03839 putative kinase; Provisional

Probab=97.27  E-value=0.00025  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +|+++|.||+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888663

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.27  E-value=0.00026  Score=47.38  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998775

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.25  E-value=0.0012  Score=42.46  Aligned_cols=82  Identities=15%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             EEEEC-CCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177           10 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus        10 i~vvG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      |++.| ..|+||||+...+...-.. ...+...      +..+.. +.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~------~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLL------IDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEE------EeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56666 5689999998665542111 1111111      111111 678899999864322  22567789999999886


Q ss_pred             CChhhHHHHHHHHHH
Q 029177           89 ISKASYENISKKWIP  103 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~  103 (197)
                      + ..++... ..+++
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            4 4455555 45544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.25  E-value=0.00028  Score=48.05  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.25  E-value=0.0003  Score=50.52  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999664

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.00026  Score=52.35  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |+++|++|+|||||++-+.+
T Consensus        32 vsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999988866

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.24  E-value=0.00027  Score=50.33  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.24  E-value=0.00037  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +|+++|++|+||||+...+...
T Consensus         6 ~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            7999999999999999988753

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.24  E-value=0.035  Score=39.02  Aligned_cols=141  Identities=9%  Similarity=0.074  Sum_probs=90.0

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ......|++||..+.++..|...+....-.          +...+..-.. ..     .|.  +    ....=...|.++
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s-LP-----Lp~--e----~~~lRprIDlIV   69 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS-LP-----LPS--E----NNNLRPRIDLIV   69 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc-CC-----Ccc--c----ccCCCceeEEEE
Confidence            344678999999999999999999863210          1111211110 11     011  1    111123579999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |++|....-|+... +.=+..+...+--=.+.++++-....+.-.          +...++..++..|.. |++.+.-.+
T Consensus        70 Fvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le~  137 (176)
T PF11111_consen   70 FVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLEN  137 (176)
T ss_pred             EEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeeccc
Confidence            99999999999888 444444443332224566666666554333          788999999999998 888888777


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      .++...+-+.+.+.+
T Consensus       138 ~~~~~~lAqRLL~~l  152 (176)
T PF11111_consen  138 EEGRTSLAQRLLRML  152 (176)
T ss_pred             chHHHHHHHHHHHHH
Confidence            777666666555543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.23  E-value=0.00033  Score=46.98  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      .++++|++|+||||++..+.....
T Consensus         4 ~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        4 VILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             EEEEECCCCCcHHHHHHHHHhccC
Confidence            689999999999999999987644

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08233 hypothetical protein; Provisional

Probab=97.22  E-value=0.00036  Score=49.62  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=20.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+-|+|.|.+|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999999764

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.22  E-value=0.0003  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+|+|+.|+|||||++.|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888764

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.21  E-value=0.0038  Score=48.68  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      .++.|--|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567899999999999999864

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.21  E-value=0.0027  Score=54.72  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|+.||||||.+..|..
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999977764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.20  E-value=0.00029  Score=46.99  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888765

...

>PRK13949 shikimate kinase; Provisional

Probab=97.19  E-value=0.00036  Score=49.29  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|+|++|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.00034  Score=51.41  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|++||++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999988876

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.17  E-value=0.00037  Score=45.13  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.17  E-value=0.00035  Score=49.98  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|+++|++||||||+++++..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14532 adenylate kinase; Provisional

Probab=97.15  E-value=0.00038  Score=49.96  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+++|+|||||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999875

>PHA00729 NTP-binding motif containing protein

Probab=97.15  E-value=0.00046  Score=50.77  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +....+|++.|+||+|||+|..++...
T Consensus        14 ~~~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         14 NNGFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            345679999999999999999888764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.14  E-value=0.00038  Score=50.43  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+|.|++|||||||++.|.+-
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.12  E-value=0.00043  Score=49.25  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+++|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999873

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14531 adenylate kinase; Provisional

Probab=97.09  E-value=0.00052  Score=49.14  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+|+++|+|||||||+..++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999988865

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.09  E-value=0.0004  Score=49.95  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988763

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00625 shikimate kinase; Provisional

Probab=97.08  E-value=0.00049  Score=48.80  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988865

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.07  E-value=0.00066  Score=48.19  Aligned_cols=27  Identities=15%  Similarity=0.028  Sum_probs=22.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..+..-|++.|.+|+||||+.+.+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            345578999999999999999887653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.07  E-value=0.00057  Score=48.60  Aligned_cols=20  Identities=20%  Similarity=0.209  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      .++++|+.|+|||||++.+.
T Consensus        23 ~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.07  E-value=0.00049  Score=49.07  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |+++|+|||||||+..++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=97.06  E-value=0.00069  Score=50.45  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++.|+|+|+|||||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988875

>PRK02496 adk adenylate kinase; Provisional

Probab=97.06  E-value=0.0006  Score=48.77  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++|+|+||+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988865

>PRK06547 hypothetical protein; Provisional

Probab=97.05  E-value=0.00069  Score=48.02  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ......|+|.|.+||||||+.+.|...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998764

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.05  E-value=0.00053  Score=46.62  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999887753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.04  E-value=0.0006  Score=48.30  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +++|+|++|+|||||+|-+-+=
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhc
Confidence            6899999999999999987653

>TIGR01351 adk adenylate kinases

Probab=97.03  E-value=0.00049  Score=50.39  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      ||+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.02  E-value=0.00063  Score=48.43  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999887753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.01  E-value=0.00068  Score=48.67  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.++++|++|+||||+++.+.+-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.01  E-value=0.0045  Score=43.97  Aligned_cols=85  Identities=20%  Similarity=0.218  Sum_probs=57.9

Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN  132 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  132 (197)
                      ..+.+.++|+|+....  .....+..+|.+++++..+.. +.... ..+.+.+...  +.|+.+|.|+.|...       
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~-------  157 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDL-ERAVELVRHF--GIPVGVVINKYDLND-------  157 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCc-------
Confidence            3478889999976432  223456789999999988743 55555 5566666654  578889999998753       


Q ss_pred             CCCCCCccHHHHHHHHHHcCCcEEE
Q 029177          133 HPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                            -..+++.++.++++. +++
T Consensus       158 ------~~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         158 ------EIAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             ------chHHHHHHHHHHcCC-CeE
Confidence                  223556777777776 444

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.00  E-value=0.00058  Score=50.40  Aligned_cols=21  Identities=24%  Similarity=0.135  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|++|||||||++.+.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            678999999999999888763

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.0011  Score=48.45  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=24.9

Q ss_pred             CCCC-cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            1 MMNT-ARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         1 ~~~~-~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||.. .+.+=|+|-|.+||||||+.+.+...
T Consensus         1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~   31 (218)
T COG0572           1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQ   31 (218)
T ss_pred             CCCCCCceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            5544 56788999999999999999988764

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.00067  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|.|.||+||||+..+|..
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~   22 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLRE   22 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHH
Confidence            799999999999999999874

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.97  E-value=0.0006  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=16.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-.++|.|++|+|||+|++++..
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998765

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.97  E-value=0.00076  Score=49.57  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            5899999999999999998875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.96  E-value=0.00093  Score=49.60  Aligned_cols=26  Identities=15%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+.+-|++.|++|+|||||++.+.+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45788999999999999999988764

>PRK14527 adenylate kinase; Provisional

Probab=96.96  E-value=0.00091  Score=48.18  Aligned_cols=23  Identities=13%  Similarity=0.069  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--|+++|+||+||||+...+..
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999988864

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.94  E-value=0.00083  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998874

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.94  E-value=0.00077  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.94  E-value=0.00067  Score=45.44  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -+++.|++|+|||++++++...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.94  E-value=0.00084  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.00072  Score=52.71  Aligned_cols=20  Identities=25%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      ++++|++|+|||||++.+-+
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999988876

>PRK04195 replication factor C large subunit; Provisional

Probab=96.94  E-value=0.007  Score=50.03  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+||||+++.+...
T Consensus        40 ~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.94  E-value=0.00076  Score=50.61  Aligned_cols=21  Identities=19%  Similarity=0.283  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|+.|+|||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368999999999999998876

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.93  E-value=0.00077  Score=48.89  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~   31 (197)
                      |++.|++|+||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.92  E-value=0.00078  Score=49.27  Aligned_cols=22  Identities=18%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.92  E-value=0.00064  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+++|++|+||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999988764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.92  E-value=0.00089  Score=48.73  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988774

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.00079  Score=48.88  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      -.+++||+|+|||||++.|-
T Consensus        35 VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHH
Confidence            46899999999999997774

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.92  E-value=0.00089  Score=49.84  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.00066  Score=46.32  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..-+|+|.|.||+|||||..++..
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHH
Confidence            345899999999999999999874

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.90  E-value=0.00096  Score=48.55  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK04040 adenylate kinase; Provisional

Probab=96.90  E-value=0.00095  Score=48.02  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..|+|.|.||+||||+++.+...
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~   25 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEK   25 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            47999999999999999988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-94
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-92
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-91
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-82
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-64
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-64
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-64
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-64
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-64
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-64
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-64
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-63
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-63
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-63
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-63
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-63
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-63
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-63
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-63
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-63
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-63
1mh1_A	186	Small G-Protein Length = 186		5e-63
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		5e-63
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-63
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-62
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-62
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-62
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-62
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-62
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-62
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-61
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-61
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-61
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-55
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-53
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-53
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		3e-53
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-53
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-53
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-53
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-53
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		4e-53
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		6e-53
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		7e-53
2kb0_A	178	Cdc42(T35a) Length = 178		9e-53
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-52
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-52
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-52
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-52
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-49
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-49
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-49
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-49
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-49
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-49
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-49
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-49
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-49
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-49
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-49
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		7e-49
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		7e-49
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-48
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-48
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-48
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-48
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-48
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		7e-48
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-46
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-43
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-40
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-40
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-34
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		9e-34
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-33
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-28
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-28
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		6e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-21
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-21
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-20
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-19
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-19
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-19
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-19
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-19
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		7e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		8e-19
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-18
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-18
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-18
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-18
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-18
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-18
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-18
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-18
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-18
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-18
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-18
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-18
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-18
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-18
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-18
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-18
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		8e-18
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-17
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-17
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-17
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-17
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-17
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-17
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-17
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-17
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-17
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		5e-17
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		6e-17
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		7e-17
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-17
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-17
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-16
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-16
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-16
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-16
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-16
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-16
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-16
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-16
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-16
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-16
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		5e-16
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-16
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		7e-16
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		7e-16
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-16
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-15
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-15
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-15
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-15
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-15
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-15
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-15
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-15
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-15
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		8e-15
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-14
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-14
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		4e-14
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-14
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-13
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-13
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		7e-13
2bku_A	177	Kap95p:rangtp Complex Length = 177		8e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		9e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-12
1byu_A	216	Canine Gdp-Ran Length = 216		1e-12
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		3e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-12
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		6e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-11
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-11
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-11
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-11
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-11
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-11
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		7e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		8e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-10
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		7e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		8e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-07
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		8e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		9e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		9e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		3e-05
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		1e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  340 bits (872), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 159/179 (88%), Positives = 171/179 (95%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DLR+DKQ+ I+HPGA PITT QGEELKKLIG+ +YIECSSKTQQNVK VFDAAIKVVLQ
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  334 bits (856), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 170/179 (94%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DLR+DKQ+ I+HPGA PITT QGEELKKLIGA  YIECSSK+Q+NVK VFDAAI+VVLQ
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  331 bits (848), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 155/179 (86%), Positives = 167/179 (93%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+TARFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP +PIVLVGTK 
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DLR+DKQ+L +HPGA  ITTAQGEEL+K+IGA  Y+ECSSKTQQNVK VFD AI+V L+
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 157/179 (87%), Gaps = 2/179 (1%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYEN+ KKW+PELR +AP VPIVLVGTK 
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DLR+DK YL +H     IT+ QGEEL+K IGAA YIECSSKTQQNVK VFD AIKVVLQ
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  241 bits (616), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 138/179 (77%), Gaps = 2/179 (1%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
            T + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 18  GTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 77
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           AGQEDY+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK D
Sbjct: 78  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
Query: 123 LREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           LR+DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 138 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  240 bits (613), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/175 (64%), Positives = 137/175 (78%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL+
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  240 bits (613), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  240 bits (612), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 70
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 131 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N  P +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  236 bits (603), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  236 bits (603), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  236 bits (603), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 137/179 (76%), Gaps = 2/179 (1%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
            + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 1   GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           AGQEDY+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
Query: 123 LREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           LR+DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  236 bits (602), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N F  +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S ASYEN+  KW PE+RH+ P+ PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT  QG  L K I +  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT  QG  + + IG+  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT  QG  + + IG+  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 135/174 (77%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+DK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT  QG  + + IG+  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           DY+RLRPLSY   DVFL+ FSL+S AS+ ++  KW PE+RH+ P  PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           DY+RLRPLSY   DVFL+ FSL+S AS+ ++  KW PE+RH+ P  PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 134/175 (76%), Gaps = 2/175 (1%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 66
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG E
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           DY+RLRPLSY   DVFL+ FSL+S AS+ ++  KW PE+RH+ P  PI+LVGTK DLR+D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 127 KQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 139/193 (72%), Gaps = 21/193 (10%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 68  YNRLRPLSY--------------RG-----ADVFLLAFSLISKASYENISKKWIPELRHY 108
           Y+RLRPLSY              RG     ADVFL+ FSL+S AS+EN+  KW PE+RH+
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 109 APTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN 166
            P  PI+LVGTK DLR+DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 167 VKTVFDAAIKVVL 179
           +KTVFD AI+ VL
Sbjct: 186 LKTVFDEAIRAVL 198

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FSL+S ASYEN+  KW PE+RH+ P+ PI+LVGTK DLR+DK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT  QG  L K I +  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 135/177 (76%), Gaps = 2/177 (1%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           ++ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAG
Sbjct: 7   SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 66
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QEDY+RLRPLSY   DVFL+ FSL+S ASYEN+  KW PE+RH+ P+ PI+LVGTK DLR
Sbjct: 67  QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR 126
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           +DK  +  +      PIT  QG  L K I +  Y+ECS+ TQ+ +KTVFD AI+ VL
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 133/177 (75%), Gaps = 2/177 (1%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           A  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAG
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QEDY+RLRPLSY   DVFL+ FS+++ AS++N+ ++W+PEL+ YAP VP +L+GT+ DLR
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           +D + L  +N     PI   QG++L K IGA  Y+ECS+ TQ+ +KTVFD AI  +L
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 131/182 (71%), Gaps = 2/182 (1%)
Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           +++  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+
Sbjct: 4   IISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 63
Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
           DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
Query: 121 QDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            DLR+D   +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 179 LQ 180
           L+
Sbjct: 184 LE 185

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 125 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 179

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 188

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 127 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 129/178 (72%), Gaps = 2/178 (1%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           ++ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG
Sbjct: 5   SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 64
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR
Sbjct: 65  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 124
Query: 125 EDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +D   +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 126
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 127 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  202 bits (515), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 130
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 131 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 185

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N  P++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
             +  +      PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 129/175 (73%), Gaps = 2/175 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +++LRPL Y   D+FLL FS++S +S++N+S+KW+PE+R + P  PI+LVGT+ DLRED 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           + LI  +     P+     + L + I AA YIECS+ TQ+N+K VFDAAI   +Q
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 71  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 130
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 131 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  189 bits (481), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           +RLRPLSY   DV L+ FS+ S  S ENI +KW+PE++H+ P VPI+LV  K+DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
               +      P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           +R RPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
               +      P+  A+G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK- 127
           +RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+ 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 -QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDGA GKTC+LI  +   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           +RLRPLSY  ++V L+ FS+    S EN+ +KWI E+ H+   VPI+LVG K DLR D Q
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            +  +   G  P+T+ +G+ +   IGA  Y ECS+KT   V+ VF+AA +  L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           +DY+RLRPL Y  A V LL F + S  S++NI  +W PE+ H+   VPI++VG K DLR+
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 126 DKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DK  +  +   G  P+T  +G+E+ + +GA  Y+ECS++   NV  VF  A +V L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           AGQE+Y+RLRPLSY  +DV LL F++ ++ S++NIS KW PE++HY  T   VLVG K D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           LR+D        G+  +T  +G++L + +G   YIE SS  +  +  VF+ ++  + 
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD 122
           AGQE+Y+RLRPLSY  +DV LL F++ ++ S++NIS KW PE++HY  T   VLVG K D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           LR+D        G+  +T  +G++L + +G   YIE SS  +  +  VF+ ++  + 
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 7/180 (3%)
Query: 1   MMNTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG 58
           +M+  + +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L 
Sbjct: 15  IMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELS 74
Query: 59  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVG 118
           LWDT+G   Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG
Sbjct: 75  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 134
Query: 119 TKQDLREDKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
            K DLR D   L+   NH   TP++  QG  + K IGAA YIECS+ +++ +V+ +F  A
Sbjct: 135 CKSDLRTDVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 2   MNTARFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 59
           M+  + +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 60  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGT 119
           WDT+G   Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 120 KQDLREDKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
           K DLR D   L+   NH   TP++  QG  + K IGAA YIECS+ +++ +V+ +F  A
Sbjct: 141 KSDLRTDVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 8   IKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G 
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
             Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG K DLR 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Query: 126 DKQYLI---NHPGATPITTAQGEELKKLIGAAVYIECSS-KTQQNVKTVFDAA 174
           D   L+   NH   TP++  QG  + K IGAA YIECS+ +++ +V+ +F  A
Sbjct: 126 DVSTLVELSNH-RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P+  ++L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
            L  ++H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A  + L
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P+  ++L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
            L  ++H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A  + L
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P+  ++L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 129 YL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVL 179
            L  ++H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A  + L
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
            +K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V L +WDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-----VPIVLVGTK 120
           E +  LR   YRGAD  LL FS+  + S+EN+   W  E  +YA        P V++G K
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            D +ED+Q          +TT + +      G   Y+E S+K   NV   F+ A++ VL
Sbjct: 126 VD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 59
           M   +   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 60  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPI 114
           WDTAGQE +  LR   YRG+D  LL FS+    S++N+S  W  E  +YA      + P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPF 119
Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
           V++G K D+ E +           ++T + +   +  G   Y E S+K   NV   F+ A
Sbjct: 120 VILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
Query: 175 IKVVL 179
           ++ VL
Sbjct: 169 VRRVL 173

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 59
           M   +   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +
Sbjct: 3   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 62
Query: 60  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPI 114
           WDTAGQE +  LR   YRG+D  LL FS+    S++N+S  W  E  +YA      + P 
Sbjct: 63  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPF 121
Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
           V++G K D+ E +           ++T + +   +  G   Y E S+K   NV   F+ A
Sbjct: 122 VILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
Query: 175 IKVVL 179
           ++ VL
Sbjct: 171 VRRVL 175

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 63
           +   K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVG 118
           GQE +  LR   YRG+D  LL FS+    S++N+S  W  E  +YA      + P V++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K D++E +           ++T + +   K  G   Y E S+K   NV   F+ A++ +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 179 L 179
           L
Sbjct: 177 L 177

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                    A  + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R   +R  + FLL FS+    S+   +  ++ I  ++     +P+++VG K DL E 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +Q         P+  A+    K       Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 158

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R   +R  + FLL FS+    S+   +  ++ I  ++     +P+++VG K DL E 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +Q         P+  A+    K       Y+E S+KT+ NV  VF
Sbjct: 129 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 162

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y R+    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                    A  + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                    A  + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                  P  T + T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 139 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 174

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                  P  T + T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
            K + VGD  VGKTC+L+ +    F    ++ TV  +F   V+ VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
           E +  +    YR A   LL + + +KAS++NI + W+ E+  YA   V ++L+G K D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            ++           +    GE+L K  G   ++E S+KT  NV   F A  K
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAK 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + ++  TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S++N+ K+WI E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             +           +T+ +G EL    G   +IE S+K   NV+  F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + SY N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 128 TKK--VVDNTTAKEFADSLG---------IPFLETSAKNATNVEQAF 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + SY N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 128 TKK--VVDNTTAKEFADSLG---------IPFLETSAKNATNVEQAF 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
           +  +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTA
Sbjct: 5   SSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 64
Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQD 122
           GQE +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D
Sbjct: 65  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +               +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 124 ME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D+  
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 138
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                        +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 139 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 182

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 127 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 162

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                        +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +GS+     V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
           +L LWDTAGQE +  L    +R A  FLL F L S+ S+ N+ + W+ +L+   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL+G K DL          P    +   Q  EL    G   Y E S+ T QNV+   + 
Sbjct: 144 IVLIGNKADL----------PDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 174 AIKVVLQ 180
            + ++++
Sbjct: 193 LLDLIMK 199

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N+    K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DT
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 73
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
           AGQEDY  +R   +R  + FL  FS+    S+   +      LR      VP +LVG K 
Sbjct: 74  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 133
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           DL + +Q  +           + E+         Y+E S+KT+ NV  VF
Sbjct: 134 DLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N+    K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DT
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
           AGQEDY  +R   +R  + FL  FS+    S+   +      LR      VP +LVG K 
Sbjct: 62  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 121
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           DL + +Q  +           + E+         Y+E S+KT+ NV  VF
Sbjct: 122 DLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 160

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N+    K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DT
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 69
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQ 121
           AGQEDY  +R   +R  + FL  FS+    S+   +      LR      VP +LVG K 
Sbjct: 70  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 129
Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           DL + +Q  +           + E+         Y+E S+KT+ NV  VF
Sbjct: 130 DLEDKRQVSVEE------AKNRAEQWN-----VNYVETSAKTRANVDKVF 168

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 18/167 (10%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLRED 126
             +R   +R  + FL  FS+    S+   +  ++ I  ++     VP +LVG K DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGA--AVYIECSSKTQQNVKTVF 171
           +Q  +             EE K         Y+E S+KT+ NV  VF
Sbjct: 125 RQVSV-------------EEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 130 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A + + I LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                   H  A P   A+    K  +    +IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 159

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +  + F TDY PT+ D+++   V+D     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
           + FLL FS+  + S+E I K     LR       P++L+G K DL   +Q          
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------- 127
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           +T  +G++L + +    Y+E S+K + NV   F   ++V+
Sbjct: 128 VTQEEGQQLARQL-KVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQ 65
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F +  V VDG  V  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTK 120
           E +  L    YRGAD  +L + + + +S+ENI K W  E   +A      T P V++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            D  E K+          ++    +EL K +G       S+K   NV T F+   +  LQ
Sbjct: 128 IDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 120 K--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 153

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 125 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 160

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ N+ + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL+G K DL          P    +   Q  EL +  G   Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
            + ++++
Sbjct: 179 LLDLIMK 185

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 125 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 160

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 11/166 (6%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
            +  L P  YR A   L+ + +    S+   ++ W+ EL   A   + I LVG K D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKID--- 119
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                +   G   +   +GE+L +  G  ++ E S+KT +NV  VF
Sbjct: 120 ----XLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRED 126
           +  +    YRGA   +L + + ++ S++NI + WI  +  H +  V  +++G K D+ + 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +Q          ++  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K            TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLR 124
           E +  +    YRGA   +L + + ++ S++NI + WI  +  H +  V  +++G K D+ 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           + +Q          ++  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 DKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRG+   ++ + +  + S+  + K W+ E+  YA  TV  +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 125 EDK 127
           + +
Sbjct: 127 DKR 129

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K V +GD   GK+ +++ +  + F      T+   F S  + V+ +TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           Y+ L P+ YRGA   ++ F + ++AS+E  +KKW+ EL+    P + + L G K DL + 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           ++            TA+  +         ++E S+KT  NVK +F
Sbjct: 133 RK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K  ++++  A     + G           ++E S+K   NV+  F
Sbjct: 127 TKK--VVDYTTAKEFADSLG---------IPFLETSAKNATNVEQSF 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 14/174 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRED 126
           +  L P   R + V ++ + + +  S++  S KWI ++R      V I+LVG K DL + 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +Q          IT  +GE+  K + + ++IE S+KT  NVK +F      +L+
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 14/180 (7%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 61
           N +   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
           TAGQE +  +    YRGA   L+ + +  +++Y ++S  W+ + R+   P   I+L+G K
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 129
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL   +           +T  + ++  +  G  +++E S+KT +NV+  F  A K + Q
Sbjct: 130 ADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRG+   ++ + +  + S+  + K W+ E+  YA  TV  +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 125 EDK 127
           + +
Sbjct: 127 DKR 129

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ N+ + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL+G K DL          P    +   Q  EL +  G   Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
            + ++++
Sbjct: 179 LLDLIMK 185

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K            TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K            TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             K            TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
           A   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTA
Sbjct: 8   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTA 67
Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQD 122
           GQE +  +    YRGA   LL + +  + ++ +++  W+ + R H    + I+L+G K D
Sbjct: 68  GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSD 126
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           L   ++          +   +GE   +  G  +++E S+KT  NV+  F
Sbjct: 127 LESRRE----------VKKEEGEAFAREHG-LIFMETSAKTASNVEEAF 164

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E +  +    YRGA   LL + +  + ++ +++  W+ + R H +  + I+L+G K DL 
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             +           +   +GE   +  G  +++E S+KT  NV+  F
Sbjct: 140 SRR----------DVKREEGEAFAREHG-LIFMETSAKTACNVEEAF 175

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRG+   ++ + +  + S+  + K W+ E+  YA  TV  +LVG K DL+
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 125 EDK 127
           + +
Sbjct: 140 DKR 142

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N+    K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DT
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 61
Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTK 120
           AG EDY  +R   +R  + FL  FS+    S+   +  ++ I  ++     VP +LVG K
Sbjct: 62  AGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNK 120
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q  +           + E+         Y+E S+KT+ NV  VF
Sbjct: 121 SDLEDKRQVSVEEA------KNRAEQWN-----VNYVETSAKTRANVDKVF 160

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           E +  +    YRG    ++ + + S  S+ N+ K+W+ E+      V  +LVG K D   
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND--- 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                   P    + T    +    +G  ++ E S+K   NV+ +F+   ++VL+
Sbjct: 125 -------DPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFNCITELVLR 171

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 172

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ N+ + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL+G K DL          P    +   Q  EL +  G   Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVV 178
            + ++
Sbjct: 179 LLDLI 183

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 55
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVP 113
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ N+ + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL+G K DL          P    +   Q  EL +  G   Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 174 AIKVVLQ 180
            + ++ +
Sbjct: 179 LLDLIXK 185

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K  + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG + DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           +++ +    YRGA   +L FS   + S+E IS  W  ++      +P  LV  K DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
                     + I   + E L K +    Y   S K   NV  VF
Sbjct: 125 ----------SCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  VLVG K DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKVV 178
           E ++  ++   A   + AQ            Y+E S+K   NV+ +F D A +++
Sbjct: 145 ERRE--VSQQRAEEFSEAQD---------MYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
           ++ L P+ YR ++  +L + +  + S++ + K W+ ELR      + + +VG K DL ++
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
           ++ L P+ YR ++  +L + +  + S++ + K W+ ELR      + + +VG K DL ++
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
           ++ L P+ YR ++  +L + +  + S++ + K W+ ELR      + + +VG K DL ++
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 171

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  ++ PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
           TAGQE +  L P   R + V ++ + + +  S+   S KWI ++R      V I+LVG K
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNK 128
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q          ++T +GE   K +   ++IE S+K   NVK +F
Sbjct: 129 TDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 14/176 (7%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T N F  D   T+   F+   + ++G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E Y  +    YRGA   L+ + +   +SYEN +  W+ ELR  A   V + L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDL- 130
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
               +L   P     T AQ  +L       ++ E S+   +NV   F+  I  + Q
Sbjct: 131 ---AHLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFEELINTIYQ 176

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ +++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 61
           N +   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
           TAGQ  +  +    YRGA   L+ + +  +++Y ++S  W+ + R+   P   I+L+G K
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNK 144
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL   +           +T  + ++  +  G  +++E S+KT +NV+  F  A K + Q
Sbjct: 145 ADLEAQRD----------VTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL          P  T
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL          P  T
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 71
           +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 72  RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDL 123
               YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YRGA   LL + + S+ +Y +++  W+ + R  A P + ++L G K+DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDL- 142
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            D +  +    A+    AQ  EL       +++E S+ T +NV+  F    + +L
Sbjct: 143 -DPEREVTFLEASRF--AQENEL-------MFLETSALTGENVEEAFLKCARTIL 187

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+ +I+  ++ I  ++  +  VP+VLVG K DL          P  T
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + T Q  EL K  G   +IE S+KT+Q V+  F   ++ + Q
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQ 183

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 166

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 170

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 64
             K V +GD  VGK+ +L  +T + F  +   T+   F+   +   +   +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDL 123
           QE Y  +    YRGA   LL + +  K S+ENI +KW+ ELR  A + + I+LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +  +  +IN   AT    A+ E+L        +IE S+    NV+  F
Sbjct: 126 KHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ ++   +K W+ EL R  +P++ I L G K DL  
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLAN 127
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +  ++ +  A                + +++E S+KT  NV  +F A  K
Sbjct: 128 KR--MVEYEEAQAYADD---------NSLLFMETSAKTAMNVNDLFLAIAK 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + +  ++   +K W+ EL R  +P + I L G K DL  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 123 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + +  ++   +K W+ EL R  +P + I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 125 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 164

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P  YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   ++ E S+KT  NV  +F A  K
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFXETSAKTSXNVNEIFXAIAK 166

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
           + FL  F++ +  S+E+I   ++ I  ++  +  VP+VLVG K DL          P  T
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 67
           K V  GD AVGK+  L+    N F  +   T+  +F    ++VDG    L LWDTAGQE 
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    +R AD  LL + +  + S+ NI ++W+  +   A  TVPI+LVG K D+R+ 
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167
                   G   +    GE+L    G A++ E S+K   N+
Sbjct: 149 AAT----EGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNI 184

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  FLL + + ++ S+  + + W  +++ Y+     ++LVG K DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           +    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ER----------VVPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMAIAK 165

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLR 124
           E +  +    YR A+  +LA+ +  ++S+ ++   WI ++R YA + +  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           E ++          ++ A+ + L +       IE S+K   NV+  F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
            +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG K D   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           D++          IT  QGE+  + I    + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + ++ S+   +K W+ EL R  +P + I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ         + +++E S+KT  NV  +F A  K
Sbjct: 125 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 66
            K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G + V   +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y  +    YRGA   LL F L    +Y  + ++W+ EL  H   T+ ++LVG K DL +
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            ++     P       A+   L       +++E S+    NV+  F+  +K + 
Sbjct: 130 AREV----PTEEARMFAENNGL-------LFLETSALDSTNVELAFETVLKEIF 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRED 126
           +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K DL + 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 155

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ E
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           ++           + T +G+ L + +G   + E S+K   +V+  F+  +  +
Sbjct: 143 ER----------VVPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
           +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV--LVGTKQDLR 124
            +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     IV  LVG K D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           E+++          +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q
Sbjct: 134 ENRE----------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E +  +R L  +    F L +S+ +++++ ++       LR      VP++LVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 66
            K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y  +    YRGA   LL F L    +Y  + ++W+ EL  H   T+ ++LVG K DL +
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            ++     P       A+   L       +++E S+    NV+  F+  +K + 
Sbjct: 145 AREV----PTEEARMFAENNGL-------LFLETSALDSTNVELAFETVLKEIF 187

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R  K V +G G VGK+ + + +    F  +Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E +  +R L  +    F L +S+ +++++ ++       LR      VP++LVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL-RHYAPTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ + + +  ++   +K W+ EL R  +P + I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
            +        A     AQ       +   +++E S+KT  NV  +F A  K
Sbjct: 125 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAK 164

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 55
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 56  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRH--YAPTVP 113
           +L LWDTAG E +  L    +R A  FLL F L ++ S+ N+ + WI +L+   Y+    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 114 IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
           IVL G K DL + +           +   +  EL +  G   Y E S+    N+    + 
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEM 178
Query: 174 AIKVVLQ 180
            + ++++
Sbjct: 179 LLDLIMK 185

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 64
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
           QE +  L P   R +   ++ + + +  S++  + KWI ++R      V I+LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLR 124
           E +  +R L  +    F L +S+ +++++ ++       LR      VP++LVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
           TAG E +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 120
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 121 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 160

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 1   MMNTARFI-KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLG 58
           M  T  F+ K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L 
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 59  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLV 117
           +WDTAGQE +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + I+L 
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILC 121
Query: 118 GTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177
           G K+DL  D++  +    A+    AQ  EL       +++E S+ T +NV+  F    + 
Sbjct: 122 GNKKDLDADRE--VTFLEASRF--AQENEL-------MFLETSALTGENVEEAFVQCARK 170
Query: 178 VL 179
           +L
Sbjct: 171 IL 172

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
           R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAG
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDL 123
           QE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL
Sbjct: 82  QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDL 140
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
            + ++         P+  A+  E  + IGA V +E S+K   N++ +F  
Sbjct: 141 SDIRE--------VPLKDAK--EYAESIGAIV-VETSAKNAINIEELFQG 179

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
           TAG E +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 130
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 131 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 170

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D  +
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 171

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 4   TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 63
           + R  K V +G   VGK+ + + +    F   Y PT+ D++   V VD     L + DTA
Sbjct: 2   SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQD 122
           G E +  +R L  +    F L +S+ +++++ ++       LR      VP++LVG K D
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           L +++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 LEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
           E +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + I+L G K+DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            D++  +    A+    AQ  EL       +++E S+ T ++V+  F    + +L
Sbjct: 130 ADRE--VTFLEASRF--AQENEL-------MFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +G+ AVGKT ++  +  +TF  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAPTVPIVLVGTKQDLRED 126
           +  L P   R +   ++ + + ++ S+EN + KWI + L      V I LVG K DL + 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           ++          +T  +G +  +      + E S+K   N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 14  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 73
           G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 74  LSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLREDKQYLI 131
           LS      F+L +S+ S+ S E +    + I E++    ++PI+LVG K D    ++   
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 132 NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV 177
                  + +++ E L +    A ++E S+K   NVK +F   + +
Sbjct: 127 -------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNL 164

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTK 120
           TAG E +  L P   R +   ++ + + +  S++  + KWI ++R      V I+LVG K
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNK 127
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 128 TDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLF 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
           +R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTA
Sbjct: 18  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 77
Query: 64  GQEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTK 120
           GQE + + +    YR     +  + + + AS+ ++   WI E + +  A  +P +LVG K
Sbjct: 78  GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNK 136
Query: 121 QDLR 124
            DLR
Sbjct: 137 CDLR 140

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K V +GD  VGK+ +L  +T++ F  +   T+   F+   + V+   +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E Y  +    YRGA   L+ + +   +SYEN +  W+ ELR  A   V + L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLTELRENADDNVAVGLIGNKSDLA 128
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                   H  A P   A+   ++  +   ++ E S+    NV   F   I  + Q
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAFRELIVAIFQ 173

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
             FLL F++  + S+  + K +   LR       P+VLVG K DL   +Q         P
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 139 ITTAQGEELKKLIGAA---VYIECSSKTQQNVKTVFDAAIKVV 178
            + A         GA+    Y E S+K + NV   F+  ++ V
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 63
           +R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 64  GQEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTK 120
           GQE + + +    YR     +  +   + AS+ ++   WI E + +  A  +P +LVG K
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 121 QDLR 124
            DLR
Sbjct: 146 CDLR 149

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 65
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLR 124
           E +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + I+L G K+DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
            D++  +    A+    AQ  EL       +++E S+ T ++V+  F    + +L
Sbjct: 127 ADRE--VTFLEASRF--AQENEL-------MFLETSALTGEDVEEAFVQCARKIL 170

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL E++Q          + T + +          Y E S+K   NV+  F    +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL E++Q          + T + +          Y E S+K   NV+  F    +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
           QE +  L P+ YRG+   ++ + +  + ++  + K W+ ELR H  P++ + + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + ++          +     ++    I  A+++E S+K   N+  +F
Sbjct: 123 TDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 159

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 62  TAGQEDYNRLRPLSY-RGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGT 119
           TAGQ++Y+ L P S+  G   ++L +S+ S  S++ I   +      +  T VP+VLVG 
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I+ +
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEI 185

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENI--SKKWIPELRHYAPTVPIVLVGTKQDLRE 125
             + R    R  + F+L + +  + S+E +   K  + E++     V ++LVG K DL  
Sbjct: 89  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVF 171
            +Q          ++T +GE+L   +  A Y ECS+ T + N+  +F
Sbjct: 147 SRQ----------VSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            D  E++Q          + T + +          Y E S+K   NV+  F    +  L+
Sbjct: 127 IDF-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
           D FL+ +S+  KAS+E++ +     LR     + P++LV  K DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +T  QG+E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
           D FL+ +S+  KAS+E++ +     LR     + P++LV  K DL   ++          
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +T  QG+E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 136 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 177

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 64
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDL 123
            E +  L P+ YRG+   ++ + +  + ++  + K W+ ELR H  P++ + + G K DL
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            + ++          +     ++    I  A+++E S+K   N+  +F
Sbjct: 124 TDVRE----------VMERDAKDYADSI-HAIFVETSAKNAININELF 160

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            Y  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
           D FL+ +S+  KAS+E++ +     LR     + P++LV  K DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +T  QG+E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 7   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 65
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYAP----TVPIVLVGTK 120
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P V++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL E++Q          + T + +          Y E S+K   NV+  F    +  L+
Sbjct: 127 IDL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 127 K 127
           K
Sbjct: 123 K 123

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 13/163 (7%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 80  DVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDKQYLINHPGATP 138
           D FL+ +S+  KAS+E++ +     LR     + P++LV  K DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 139 ITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +T  QG+E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 127 K 127
           K
Sbjct: 135 K 135

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D++E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 127 K 127
           K
Sbjct: 125 K 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D++E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           K        A  IT  + + L+       Y + S+K+  N +  F
Sbjct: 124 K------VKAKTITFHRKKNLQ-------YYDISAKSNYNFEKPF 155

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D++E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 127 K 127
           K
Sbjct: 132 K 132

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 80  DVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVGTKQDL 123
             F+L +SL+++ S+++I   +  I  ++ Y   VP++LVG K DL
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  L    Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 127 K 127
           K
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 127 K 127
           K
Sbjct: 126 K 126

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M  ++  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 62  TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVG 118
           TAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E I       L       +PI+LVG
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI 175
            K+DL  ++           I+  +G+ L +   AA ++E S+K  Q    VF   I
Sbjct: 119 NKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRII 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 127 K 127
           K
Sbjct: 130 K 130

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 20  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 79
           K+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 80  DVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGAT 137
             F+L FS+ SK S E +    K I +++     +P++LVG K D   + Q  ++   A 
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD---ETQREVDTREAQ 137
Query: 138 PITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            +     +E K       ++E S+K   NVK +F
Sbjct: 138 AV----AQEWK-----CAFMETSAKMNYNVKELF 162

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 69  NRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
           + + P +Y    + ++L +S+ S  S+E I       L       +PI+LVG K+DL  +
Sbjct: 63  S-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +           I+  +G+ L +   AA ++E S+K  Q    VF
Sbjct: 122 R----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M  ++  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 62  TAGQEDYNRLRPLSYR-GADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGT 119
           TAGQ++Y+ + P +Y    + ++L +S+ S  S+E I       L       +PI+LVG 
Sbjct: 61  TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           K+DL  ++           I+  +G+ L +   AA ++E S+K  Q    VF
Sbjct: 120 KKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
             G+ ++  L     +  D +L+ +S+  +AS+E  S+  I +LR    T  +PI+LVG 
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K DL   ++  ++   A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 123 KSDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
             G+ ++  L     +  D +L+ +S+  +AS+E  S+  I +LR    T  +PI+LVG 
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K DL   ++  ++   A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 123 KSDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K V VGDG  GKT  +  + +      YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 127 K 127
           K
Sbjct: 135 K 135

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
             G+ ++  L     +  D +L+ +S+  +AS+E  S+  I +LR    T  +PI+LVG 
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 122
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K DL   ++  ++   A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 123 KSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 21/179 (11%)
Query: 7   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 61
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 37  YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
             G+ ++  L     +  D +L+ +S+  +AS+E  S+  I +LR    T  +PI+LVG 
Sbjct: 97  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI-QLRRARQTEDIPIILVGN 153
Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K DL   ++  ++   A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 154 KSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K   +G  +VGK+ + I +    F     PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 69  NRLRPLSYRGADV--FLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRE 125
           + + P +Y   D+  ++L +S+ S  S+E I       L       +PI+LVG K+DL  
Sbjct: 66  S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           ++           I+  +G+ L +   AA ++E S+K  Q    VF
Sbjct: 124 ER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTA 63
           R +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G+  V L +WD  
Sbjct: 5   RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKW---IPELRHYAPTVPIV-LVGT 119
           GQ    ++      GA   LL + + +  S+EN+ + W   + ++   + T P+V LVG 
Sbjct: 65  GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGN 123
Query: 120 KQDLRE 125
           K DL  
Sbjct: 124 KIDLEH 129

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 66
           K   +GDG VGKT  +       F  +Y  TV   N     + D G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRH-YAPTVPIVLVGTKQDLRE 125
               L+ + Y GA   +L F + S+ + +N++ +W+ E +       PIV+   K D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            ++  I+      +   +  E         Y E S+KT  N    F
Sbjct: 132 RQK--ISKKLVMEVLKGKNYE---------YFEISAKTAHNFGLPF 166

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 67  DYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDL 123
           D    LR    +  D FL+ FS+  + S+  + +  +  LR   P   +P++LVG K DL
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 124 REDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
              ++  +             EE + L G  +  +IE S+    N + +F+ A++ +
Sbjct: 143 ARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 28/124 (22%)
Query: 55  VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI 114
           +   +WDTAGQE Y  + PL YRGA   ++ F  IS ++  + +K W+ +L+  +    I
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYII 150
Query: 115 VLVGTK-------QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV 167
           +LV  K        D+ E ++Y            AQ   L       ++I+ S+KT  N+
Sbjct: 151 ILVANKIDKNKFQVDILEVQKY------------AQDNNL-------LFIQTSAKTGTNI 191
Query: 168 KTVF 171
           K +F
Sbjct: 192 KNIF 195

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 66
           + V +GD  VGKT +   +        +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLRE 125
           D +  +    +G   +++ +S+  + S+E+ S+  I   R H A  VPI+LVG K DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA 173
            ++  +    A  +           +    +IE S+  Q NV  +F+ 
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQ 65
           K + VG+  VGK+ +  + T      D+   +    D +   ++VD   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66  EDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQD 122
            D    L+    +  D FL+ FS+  + S+  + +  +  LR   P   +P++LVG K D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
           L   ++  +             EE + L G  +  +IE S+    N + +F+ A++ +
Sbjct: 121 LARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +G+  VGK+ +  ++        + +    D +   ++VD   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 68  YNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDLR 124
               L+    +  D FL+ FS+  + S+  + +  +  LR   P   +P++LVG K DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 125 EDKQYLINHPGATPITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV 178
             ++  +             EE + L G  +  +IE S+    N + +F+ A++ +
Sbjct: 133 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 44  FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
           +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  S+  + 
Sbjct: 38  YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 96
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
           +LR    T  VPI+LVG K DL   ++  ++   A  +           +    +IE S+
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 162 KTQQNVKTVFDAAIK 176
               NV+ +F+  ++
Sbjct: 146 ALHHNVQALFEGVVR 160

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 44  FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
           +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  S+  + 
Sbjct: 43  YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 101
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
           +LR    T  VPI+LVG K DL   ++  ++   A  +           +    +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 162 KTQQNVKTVFDAAIKVV 178
               NV+ +F+  ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 44  FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP 103
           +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  S+  + 
Sbjct: 43  YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV- 101
Query: 104 ELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS 161
           +LR    T  VPI+LVG K DL   ++  ++   A  +           +    +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 162 KTQQNVKTVFDAAIKVV 178
               NV+ +F+  ++ +
Sbjct: 151 ALHHNVQALFEGVVRQI 167

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 68  -YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP----TVPIVLVGTKQD 122
             N  R L++  A  FL+ +S +      + S  ++  L  +A     ++P +L+G K D
Sbjct: 82  PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           + + +Q          +T A+G  L    G   +   +    ++V+ VF  A++
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K   VG+ + GK+ ++  Y + T+  +  P     F   +VVDG +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIP--ELRHYAPTVPIVLVGTKQDLRE 125
              L+  ++  A VF+  FSL  + S++ +   ++     R+ A  VP+VLVGT+  +  
Sbjct: 80  ---LQFAAWVDAVVFV--FSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISA 133
Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKVV 178
               +I+   A  ++T    +LK+      Y E  +    NV+ VF D A KVV
Sbjct: 134 ANPRVIDDSRARKLST----DLKR----CTYYETCATYGLNVERVFQDVAQKVV 179

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 57  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVL 116
           L +WD AG+E++    P       ++L  + L    +  +  K W+  ++  A + P++L
Sbjct: 56  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 117 VGTKQDLREDKQ 128
           VGT  D+ ++KQ
Sbjct: 116 VGTHLDVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 57  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVL 116
           L +WD AG+E++    P       ++L  + L    +  +  K W+  ++  A + P++L
Sbjct: 58  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 117 VGTKQDLREDKQ 128
           VGT  D+ ++KQ
Sbjct: 118 VGTHLDVSDEKQ 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-116
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-112
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-111
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-108
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-106
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-106
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-104
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-103
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-102
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-101
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-101
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-99
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-99
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-52
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-50
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-50
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-49
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-49
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-48
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-47
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-47
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-47
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-46
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	7e-45
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-44
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-44
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-44
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-43
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-43
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-42
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-42
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-42
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-41
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	7e-41
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-40
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-40
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-40
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-40
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-40
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-40
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-40
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-40
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-40
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-40
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-40
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	6e-40
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-40
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-40
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	8e-40
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-39
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-39
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-39
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-39
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-39
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	6e-39
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-39
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-38
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-38
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-38
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-38
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-38
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	6e-38
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-37
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-36
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-36
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-35
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	8e-34
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-32
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-31
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-13
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-09
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-05

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  327 bits (841), Expect = e-116
 Identities = 147/192 (76%), Positives = 165/192 (85%), Gaps = 2/192 (1%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ ++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYEN+ KKW+PELR +AP VPIVLVGTK 
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DK YL +H     IT+ QGEEL+K IGAA YIECSSKTQQNVK VFD AIKVVLQP
Sbjct: 124 DLRDDKGYLADHT--NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 182 PKPKKRKRKARP 193
           P+ K+  R+ + 
Sbjct: 182 PRRKEVPRRRKN 193

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  316 bits (812), Expect = e-112
 Identities = 79/186 (42%), Positives = 113/186 (60%), Gaps = 8/186 (4%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           + N  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LW
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLW 76

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
           DTAGQE+Y+RLRPLSY  +DV LL F++ ++ S++NIS KW PE++HY  T   VLVG K
Sbjct: 77  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DLR+D            +T  +G++L + +G   YIE SS  +  +  VF+ ++  +  
Sbjct: 137 VDLRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188

Query: 181 PPKPKK 186
                K
Sbjct: 189 NKPVPK 194

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  315 bits (808), Expect = e-111
 Identities = 157/180 (87%), Positives = 171/180 (95%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK 
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DLR+DKQ+ I+HPGA PITT QGEELKKLIGA  YIECSSK+Q+NVK VFDAAI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  307 bits (787), Expect = e-108
 Identities = 95/187 (50%), Positives = 132/187 (70%), Gaps = 2/187 (1%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
               R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQ+++++LRPL Y   D+FLL FS++S +S++N+S+KW+PE+R + P  PI+LVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

Query: 122 DLREDKQYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DLRED + LI  +     P+     + L + I AA YIECS+ TQ+N+K VFDAAI   +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 180 QPPKPKK 186
           Q    ++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  302 bits (776), Expect = e-106
 Identities = 79/180 (43%), Positives = 111/180 (61%), Gaps = 2/180 (1%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           +DY+RLRPL Y  A V LL F + S  S++NI  +W PE+ H+   VPI++VG K DLR+
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 126 DKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183
           DK  +  +   G  P+T  +G+E+ + +GA  Y+ECS++   NV  VF  A +V L    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  302 bits (774), Expect = e-106
 Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FS+ S  S ENI +KW+PE++H+ P VPI+LV  K+DLR D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 128 QYLINHP--GATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
                       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A +  LQ     
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

Query: 186 K 186
           +
Sbjct: 206 Q 206

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  298 bits (764), Expect = e-104
 Identities = 113/181 (62%), Positives = 138/181 (76%), Gaps = 2/181 (1%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           +    + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLW
Sbjct: 24  LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
           DTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143

Query: 121 QDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            DLR+DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ V
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203

Query: 179 L 179
           L
Sbjct: 204 L 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  295 bits (758), Expect = e-103
 Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 2/175 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR+D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145

Query: 128 QYLIN--HPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  LQ
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  292 bits (749), Expect = e-102
 Identities = 116/183 (63%), Positives = 140/183 (76%), Gaps = 2/183 (1%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           EDY+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 126 DKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183
           DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL PP 
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183

Query: 184 PKK 186
            KK
Sbjct: 184 VKK 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  290 bits (745), Expect = e-101
 Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 3/176 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG K DLR D 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAAIKVVLQ 180
             L+  ++   TP++  QG  + K IGAA YIECS+   +N V+ +F  A    + 
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  289 bits (742), Expect = e-101
 Identities = 98/179 (54%), Positives = 133/179 (74%), Gaps = 2/179 (1%)

Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           A  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAG
Sbjct: 16  ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
           QEDY+RLRPLSY   DVFL+ FS+++ AS++N+ ++W+PEL+ YAP VP +L+GT+ DLR
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135

Query: 125 EDKQYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           +D + L   N     PI   QG++L K IGA  Y+ECS+ TQ+ +KTVFD AI  +L P
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  284 bits (728), Expect = 3e-99
 Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 3/176 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG K DLR D 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAAIKVVLQ 180
             L+  ++   TP++  QG  + K IGAA YIECS+   +N V+ +F  A    + 
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  284 bits (728), Expect = 6e-99
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 3/185 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ +RPL Y  +D  LL F +    + ++  KKW  E+  Y P+  ++L+G K DLR D 
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147

Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQPPKP 184
             L+  +H    PI+  QG  + K +GA +Y+E S+ T + ++ ++F  A  + L  P P
Sbjct: 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207

Query: 185 KKRKR 189
             +K 
Sbjct: 208 LPQKS 212

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  265 bits (678), Expect = 1e-89
 Identities = 112/184 (60%), Positives = 136/184 (73%), Gaps = 2/184 (1%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
                  IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLW
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 208

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTK 120
           DTAG EDY+RLRPLSY   DVFL+ FSL+S AS+ ++  KW PE+RH+ P  PI+LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268

Query: 121 QDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            DLR+DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ V
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328

Query: 179 LQPP 182
           L PP
Sbjct: 329 LCPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  165 bits (419), Expect = 5e-52
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 17/198 (8%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYA-PTVPIVLVGT 119
           TAGQ++Y+ L      G   ++L +S+ S  S++ I +    +    +    VP+VLVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I+ + 
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEIA 186

Query: 180 QPPKPKKRKRKARPCIFL 197
           +      ++R+   C  +
Sbjct: 187 RVENSYGQERR---CHLM 201

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  160 bits (408), Expect = 1e-50
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M  ++  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE-LRHYA-PTVPIVLVGT 119
           TAGQ++Y+          + ++L +S+ S  S+E I K    + L       +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           K+DL  ++           I+  +G+ L +   AA ++E S+K  Q    VF   I    
Sbjct: 120 KKDLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAE 168

Query: 180 QPPKPKKRKRKA 191
           +      + + +
Sbjct: 169 KMDGACSQGKSS 180

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  159 bits (404), Expect = 7e-50
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 25/210 (11%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           M   +   + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  D S   L + 
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQIT 61

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVG 118
           DT G   +  ++ LS      F+L FS+ SK S E +    K I +++     +P++LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K D    ++          + T + + + +    A ++E S+K   NVK +F   + + 
Sbjct: 122 NKCDE-TQRE----------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLE 169

Query: 179 LQ-----------PPKPKKRKRKARPCIFL 197
            +             K K+  R    C  +
Sbjct: 170 TRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  156 bits (396), Expect = 5e-49
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 23/190 (12%)

Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           +   +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKW---IPELRHYAPTVPIVLVGTKQ 121
              +  ++ LS      F+L +S+ S+ S E + K     I E++    ++PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           D    ++          + +++ E L +    A ++E S+K   NVK +F   + +    
Sbjct: 120 DESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLE--- 165

Query: 182 PKPKKRKRKA 191
                ++R  
Sbjct: 166 -----KRRTV 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  156 bits (398), Expect = 5e-49
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 21/197 (10%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I   +  +++    +  VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL-PS 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV------LQ 180
           +           + T Q ++L +  G   +IE S+KT+Q V   F   ++ +      + 
Sbjct: 124 RT----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKHKEKMS 172

Query: 181 PPKPKKRKRKARPCIFL 197
               KK+K+    C+ +
Sbjct: 173 KDGKKKKKKSKTKCVIM 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  155 bits (395), Expect = 2e-48
 Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 26/209 (12%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           N+    K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DT
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDT 69

Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTK 120
           AGQEDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K
Sbjct: 70  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNK 128

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL- 179
            DL + +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +  
Sbjct: 129 SDLEDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRA 177

Query: 180 -----------QPPKPKKRKRKARPCIFL 197
                      +  +    KR    C  L
Sbjct: 178 RKMEDSKEKNGKKKRKSLAKRIRERCCIL 206

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  153 bits (389), Expect = 6e-48
 Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
             +R L  +    F+L +SL+++ S+++I K    ++        VP++LVG K DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           ++          +++++G  L +  G   ++E S+K++  V  +F   ++
Sbjct: 124 RE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  153 bits (388), Expect = 2e-47
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDL 123
           EDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            + +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +  
Sbjct: 136 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRA 181

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  152 bits (386), Expect = 2e-47
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 20/190 (10%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
              K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQ
Sbjct: 8   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDL 123
           E++  +R    R    FLL F++  + S+  +  K   ++         P+VLVG K DL
Sbjct: 68  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADL 126

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183
              +Q          +  ++          A Y E S+K + NV   F+  ++ V     
Sbjct: 127 ESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAV----- 170

Query: 184 PKKRKRKARP 193
            +K + +  P
Sbjct: 171 -RKYQEQELP 179

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  151 bits (385), Expect = 3e-47
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDL 123
           EDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            + +Q          ++  + +          Y+E S+KT+ NV  VF   ++ +
Sbjct: 122 EDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  151 bits (383), Expect = 4e-47
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG G VGK+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I  ++  +++    +  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           + + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 123 RT----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  151 bits (384), Expect = 7e-47
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 82

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+ +I   +  +++    +  VP+VLVG K DL   
Sbjct: 83  SAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL-PT 140

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           + T Q  EL K  G   +IE S+KT+Q V+  F   ++ + Q
Sbjct: 141 RT----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQ 183

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  149 bits (380), Expect = 1e-46
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLRED 126
             +R L  +    F L +S+ +++++ ++ +    ++        VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           +   QG+ L +      ++E S+K++ NV  +F   ++ + +
Sbjct: 124 RV----------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  149 bits (378), Expect = 5e-46
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 15/175 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
           + +R    R  D FL+ +S+  KAS+E++  ++   +         P++LV  K DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT-QQNVKTVFDAAIKVVLQ 180
           ++          +T  QG+E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 139 RK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  147 bits (374), Expect = 1e-45
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 23/184 (12%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLRED 126
             L        D +++ +S+  K S+E    +   +LR    T  VPI+LVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKK 186
           ++          ++  +G     +     +IE S+    NV+ +F+  ++ +        
Sbjct: 122 RE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQI-------- 162

Query: 187 RKRK 190
           R R+
Sbjct: 163 RLRR 166

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  146 bits (371), Expect = 7e-45
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 22/192 (11%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M  +  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVGT 119
           TAGQED    R    R  + F+L + +  + S+E +       L        V ++LVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVV 178
           K DL   +Q          ++T +GE+L   +  A + ECS+ T + N+  +F    + V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREV 189

Query: 179 LQPPKPKKRKRK 190
                 ++R+  
Sbjct: 190 ------RRRRMV 195

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  144 bits (366), Expect = 2e-44
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           +      +K   VG+ + GK+ ++  Y + T+  +  P     F   +VVDG +  L + 
Sbjct: 14  LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIR 72

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT--VPIVLVG 118
           D  G  +            D  +  FSL  + S++ +   +   L  +     VP+VLVG
Sbjct: 73  DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVG 126

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           T+  +               I  ++  +L   +    Y E  +    NV+ VF    + V
Sbjct: 127 TQDAISAANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

Query: 179 LQ 180
           + 
Sbjct: 179 VA 180

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  144 bits (365), Expect = 3e-44
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
              + V +GD  VGKT +   +        +     D +   + VDG    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 66  E--DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVPIVLVGTKQ 121
           E  D +  +    +G   +++ +S+  + S+E+   +   +LR  H A  VPI+LVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           DL   ++          ++  +G     +     +IE S+  Q NV  +F+  ++ +   
Sbjct: 122 DLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQL--- 167

Query: 182 PKPKKRKRKA 191
              + R+R +
Sbjct: 168 ---RLRRRDS 174

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  144 bits (366), Expect = 4e-44
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 67
           K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 68  Y-NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVPIVLVGTKQDLR 124
               LR    +  D FL+ FS+  + S+  +  + +  LR       +P++LVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184
             ++          ++  +G  L   +    +IE S+    N + +F+ A++ +      
Sbjct: 144 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQI------ 186

Query: 185 KKRKRKAR 192
             R R+ R
Sbjct: 187 --RLRRGR 192

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  142 bits (361), Expect = 1e-43
 Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K + VG+  VGK+ +  ++        +     ++     ++VD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 68  YN-RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVPIVLVGTKQDLR 124
               L+    +  D FL+ FS+  + S+  +  + +  LR       +P++LVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             ++          ++  +G  L   +    +IE S+    N + +F
Sbjct: 123 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 158

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  142 bits (360), Expect = 1e-43
 Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 13/174 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           +++ +    YRGA   +L FS   + S+E I   W  ++      +P  LV  K DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 125 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  142 bits (361), Expect = 1e-43
 Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 18/174 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDL 123
             R        A  FL+ +S+ S+ S+++    ++  L  +A     ++P +L+G K D+
Sbjct: 82  P-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ-QNVKTVFDAAIK 176
            + +Q          +T A+G  L    G   + E S+    ++V+ VF  A++
Sbjct: 140 AQYRQ----------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVR 182

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  140 bits (354), Expect = 3e-42
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YR A+  +LA+ +  ++S+ ++   WI ++R YA   +  +L+G K DL E
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            ++          ++ A+ + L +       IE S+K   NV+  F      ++ 
Sbjct: 149 LRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  139 bits (352), Expect = 5e-42
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 23/195 (11%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL---W 60
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L   W
Sbjct: 5   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMW 64

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVPIVLVG 118
           +  G+ ++  L     +  D +L+ +S+  +AS+E    +   +LR       +PI+LVG
Sbjct: 65  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 121

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  ++ V
Sbjct: 122 NKSDLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIVRQV 170

Query: 179 L--QPPKPKKRKRKA 191
              +  K K  +R A
Sbjct: 171 RLRRDSKEKNERRLA 185

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  138 bits (350), Expect = 5e-42
 Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M +   ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAP-TVPIVLVG 118
            AG  D           AD  +  FSL  + S++ +S     +  LR      + + LVG
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 119 T--KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           T  +      +           +  A+   L   +    Y E  +    NV  VF    +
Sbjct: 116 TQDRISASSPRV----------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165

Query: 177 VVLQPPKPKK 186
            V+   K ++
Sbjct: 166 KVVTLRKQQQ 175

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  139 bits (352), Expect = 7e-42
 Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 21/173 (12%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL---W 60
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L   W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR--HYAPTVPIVLVG 118
           +  G+ ++  L     +  D +L+ +S+  +AS+E    +   +LR       +PI+LVG
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 152

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            K DL   ++          ++ ++G     +     +IE S+  Q NVK +F
Sbjct: 153 NKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELF 194

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  138 bits (349), Expect = 8e-42
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+ +L+ +  NTF   Y+ T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YRG    ++ + + S  S+ N+ K+W+ E+      V  +LVG K D  E 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           K           + T    +    +G     E S+K   NV+ +F+   ++VL+
Sbjct: 129 KV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLR 171

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  137 bits (347), Expect = 5e-41
 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 15/184 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  LR   Y  A   ++ F + S+ +Y+N+   W  +L      +PIVL G K D+++ K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKR 187
                         A+     +      Y + S+K+  N +  F    + ++  P  +  
Sbjct: 136 V------------KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 188 KRKA 191
              A
Sbjct: 183 AMPA 186

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  135 bits (343), Expect = 6e-41
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 18/178 (10%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +GDG VGK+ ++  Y +N F T    T+  +  + ++ VDG  V + +WDTAGQE 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQD 122
           +  LR   YRG+D  LL FS+    S++N+   W  E  +YA      + P V++G K D
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKID 127

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +  ++Q          ++T + +   +  G   Y E S+K   NV   F+ A++ VL 
Sbjct: 128 I-SERQ----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  135 bits (343), Expect = 7e-41
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTAGQ 65
           +K + +GD  VGKT ++  Y ++ +   Y  T+  D  +  V VDG     + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTK 120
           E +  L    YRGAD  +L + + + +S+ENI K W  E   +A      T P V++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            D  E K+          ++    +EL K +G       S+K   NV T F+   +  LQ
Sbjct: 128 IDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  134 bits (340), Expect = 2e-40
 Identities = 46/175 (26%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V +G+G VGKT +++ Y  N F   ++ T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            ++ L P+ YR ++  +L + +  + S++ + K W+ ELR      + + +VG K DL +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           ++  + E   + +G A +   S+K  + ++ +F    K +++
Sbjct: 126 ERH----------VSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  135 bits (342), Expect = 2e-40
 Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 15/186 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQE 66
           K   +GDG VGKT  +       F  +Y  T    ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
               L+ + Y GA   +L F + S+ + +N+  +W+ E +       PIV+   K D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
            ++          I+     E+ K      Y E S+KT  N    F    ++    P   
Sbjct: 132 RQK----------ISKKLVMEVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

Query: 186 KRKRKA 191
                 
Sbjct: 181 FVSNVN 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  134 bits (340), Expect = 3e-40
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+C+L+ +T   F   +  T+  +  +  V +DG  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   LL + +  + ++ ++   W+ + R ++   + I+L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +           +   +GE   +  G   ++E S+KT  NV+  F    K + +
Sbjct: 141 RRD----------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 184

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  135 bits (341), Expect = 3e-40
 Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGL 59
             N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L L
Sbjct: 10  FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69

Query: 60  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVG 118
           WDTAG E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG
Sbjct: 70  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVG 128

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K DL + +Q          ++  +GE   K +   ++IE S+K   NVK +F      +
Sbjct: 129 NKTDLADKRQ----------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 177

Query: 179 LQPPKPKKRKRKARPCI 195
                 + R R+    I
Sbjct: 178 PGMESTQDRSREDMIDI 194

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  134 bits (339), Expect = 3e-40
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  FLL + + ++ S+  + + W  +++ Y+     ++LVG K DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           +    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  134 bits (340), Expect = 3e-40
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V  GD AVGK+  L+    N F  +   T+  D     ++VDG    L LWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    +R AD  LL + +  + S+ NI ++W+  +   A  TVPI+LVG K D+R+
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRD 147

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                    G   +    GE+L    GA  + E S+K   N+        + V +
Sbjct: 148 ----TAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  134 bits (340), Expect = 3e-40
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  VLVG K DL E
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            ++          ++  + EE  +      Y+E S+K   NV+ +F      ++ 
Sbjct: 146 RRE----------VSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  133 bits (338), Expect = 5e-40
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG K D   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           D++          IT  QGE+  + I    + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  133 bits (337), Expect = 5e-40
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L  +T   F  D   T+  +  +  + V G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   L+ + +  +++Y ++   W+ + R+   P   I+L+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           +T  + ++  +  G   ++E S+KT +NV+  F  A K + Q
Sbjct: 136 RD----------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQ 178

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  133 bits (338), Expect = 6e-40
 Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL  
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            K           +     +E    +G   ++E S+K   NV+  F      + +
Sbjct: 153 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKK 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  133 bits (338), Expect = 6e-40
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGKT +L  +T N F  D   T+  +  +  V++  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA   LL F L    +Y  + ++W+ EL  +A  T+ ++LVG K DL +
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            ++          + T +     +  G   ++E S+    NV+  F+  +K +  
Sbjct: 145 ARE----------VPTEEARMFAENNGLL-FLETSALDSTNVELAFETVLKEIFA 188

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  133 bits (337), Expect = 6e-40
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K V +GD   GK+ +++ +  + F      T+    FS  + V+ +TV   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ EL+    P + + L G K DL +
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
            ++          +T    +   +  G   ++E S+KT  NVK +F    + + +    +
Sbjct: 132 ARK----------VTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  132 bits (335), Expect = 7e-40
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
              +F K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WD
Sbjct: 3   KICQF-KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
           TAGQE Y+ L P+ YRGA   ++ + + ++ S+    K W+ EL+  A P + I L G K
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL   +           +   + +         +++E S+KT  NV  +F A  K + +
Sbjct: 121 ADLANKRA----------VDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  133 bits (338), Expect = 8e-40
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +G    GK+C+L  +  N F  D   T+  +  S  V V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   LL + + S+ +Y ++   W+ + R  A P + ++L G K+DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++          +T  +     +      ++E S+ T +NV+  F    + +L 
Sbjct: 146 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILN 188

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  133 bits (336), Expect = 8e-40
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 14/171 (8%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           N  R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
           TAGQE +  L P   R + V ++ + + +  S+     KWI ++R      V I+LVG K
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNK 128

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            DL + +Q          ++T +GE   K +   ++IE S+K   NVK +F
Sbjct: 129 TDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  133 bits (336), Expect = 1e-39
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  F+L + + ++ S+  + + W  +++ Y+     ++LVG K D+ E
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           + T +G+ L + +G   + E S+K   +V+  F+  +  +  
Sbjct: 143 ERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICD 186

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  133 bits (336), Expect = 1e-39
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K + +G+   GK+C+L  +    F  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +    YRGA   LL + + S+ +Y  +   W+ + R  A   + I+L G K+DL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++          +T  +     +      ++E S+ T +NV+  F    + +L 
Sbjct: 131 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILN 173

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  132 bits (334), Expect = 2e-39
 Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + + ++ S++NI + WI  +  +A   V  +++G K D+ +
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 127

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +Q          ++  +GE+L    G   ++E S+K   NV+  F    + +  
Sbjct: 128 KRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKA 171

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  132 bits (334), Expect = 3e-39
 Identities = 46/175 (26%), Positives = 89/175 (50%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            Y  +    YRGA  F+L + + ++ S+  + + W  +++ Y+     ++LVG K D+ +
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 128 ERV----------VSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 171

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  132 bits (334), Expect = 3e-39
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRG+   ++ + +  + S+  + K W+ E+  YA  TV  +LVG K DL++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
            +           +     +E         ++E S+    NV+  F    + + +    +
Sbjct: 128 KRV----------VEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 186 KRKRKARP 193
                 + 
Sbjct: 177 NLNETTQK 184

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  131 bits (332), Expect = 4e-39
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   ++ + +  + S+ N+ K+W+ E+  YA   V  +LVG K DL  
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
            K           +     +E    +G   ++E S+K   NV+  F      + +   P 
Sbjct: 136 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  132 bits (333), Expect = 4e-39
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V+VD   V + +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQ 121
            +  L    YRGAD  +L F + +  +++ +   W  E    A        P V++G K 
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKI 127

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DL E++Q          + T + +          Y E S+K   NV+  F    +  L+
Sbjct: 128 DL-ENRQ----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  131 bits (331), Expect = 6e-39
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ +    + + + G K DL +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSD 142

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
            ++          +     +E  + IG A+ +E S+K   N++ +F
Sbjct: 143 IRE----------VPLKDAKEYAESIG-AIVVETSAKNAINIEELF 177

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  131 bits (331), Expect = 6e-39
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           Y R+    YRGA   LL + +    +YEN+ ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKK 186
           +           + T +     +    + +IE S+    NV+  F   +  + +    K+
Sbjct: 126 RA----------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  131 bits (331), Expect = 6e-39
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           Y  +    YRGA   LL + +    +YEN+ ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           +           + T +     +  G + +IE S+    NV+  F   + 
Sbjct: 150 RA----------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  131 bits (331), Expect = 1e-38
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  D   T+  +  +  + ++G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           Y  +    YRGA   L+ + +   +SYEN    W+ ELR  A   V + L+G K DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           + T + +   +      + E S+   +NV   F+  I  + Q
Sbjct: 134 RA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQ 176

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  129 bits (327), Expect = 1e-38
 Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 61
           +  R +K   +GD  VGK+ ++  +  ++F  +  PT+     +  V          +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTK 120
           TAG E +  L P+ YRG+   ++ + +  + ++  + K W+ ELR +  P++ + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            DL + ++          +     ++    I  A+++E S+K   N+  +F    + +  
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIPS 169

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  130 bits (329), Expect = 1e-38
 Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 16/188 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLR 124
            +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     +  +LVG K D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184
           E+++          +   +G +  +     ++IE S+KT   V+  F+  ++ ++Q P  
Sbjct: 134 ENRE----------VDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 185 KKRKRKAR 192
            + + +  
Sbjct: 183 WESENQNS 190

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  129 bits (327), Expect = 2e-38
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D+ E
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +           +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 122 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  129 bits (326), Expect = 3e-38
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 25/186 (13%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------FDNFSANVVVDGSTVN 56
           IK + +GD  VGKT +L  YT   F + ++ TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 57  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPI 114
           L LWDTAG E +  L    +R A  FLL F L ++ S+ N+ + WI +L+ +A      I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 115 VLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAA 174
           VL G K DL + +           +   +  EL +  G   Y E S+    N+    +  
Sbjct: 131 VLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-YFETSAANGTNISHAIEML 179

Query: 175 IKVVLQ 180
           + ++++
Sbjct: 180 LDLIMK 185

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  129 bits (326), Expect = 6e-38
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 15/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  +    YRGA   +L + +  + ++ NI K+W   +  +A     ++LVG K D+ E
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            +           +T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 139 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 182

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  127 bits (322), Expect = 1e-37
 Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 65
            K + VGD  VGKTC+L+ +    F    ++ TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +    YR A   LL + + +KAS++NI + W+ E+  YA   V ++L+G K D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            ++           +    GE+L K  G   ++E S+KT  NV   F A  K + +
Sbjct: 130 HERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 174

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  128 bits (324), Expect = 1e-37
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 31/189 (16%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG----------STVN 56
           IK + +GD  VGKT  L  YT N F   ++ TV  D     VV +             V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 57  LGLWDTAGQEDYNRLRPLS---YRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-- 111
           L LWDTAGQE   R R L+   +R A  FLL F L S+ S+ N+ + W+ +L+  A    
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 112 VPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
             IVL+G K DL + ++          +   Q  EL    G   Y E S+ T QNV+   
Sbjct: 142 PDIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAV 190

Query: 172 DAAIKVVLQ 180
           +  + ++++
Sbjct: 191 ETLLDLIMK 199

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  123 bits (311), Expect = 5e-36
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 17/183 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSA-NVVVDGS---TVNLGLWD 61
           +K + VG+   GKT +L                TV  +     + +       + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
            AG+E++    P       ++L  + L    +  +  K W+  ++  A + P++LVGT  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKTVFDAAIKV 177
           D+ ++KQ            +   +EL    G       +   +++    +  +    I  
Sbjct: 123 DVSDEKQ-------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 178 VLQ 180
            L 
Sbjct: 176 SLN 178

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  123 bits (310), Expect = 5e-36
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 18/179 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQ 65
           +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQ 121
               ++      GA   LL + + +  S+EN+ + W   ++  +        + LVG K 
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           DL   +           I   +     +  G +     S+KT  +V   F      +L 
Sbjct: 126 DLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILG 173

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  122 bits (308), Expect = 2e-35
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 25/183 (13%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGKTC+   + +  FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 67  DYNRLR----PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTK 120
              R R       YR     +  + + + AS+ ++   WI E + +     +P +LVG K
Sbjct: 81  ---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK 136

Query: 121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ---QNVKTVFDAAIKV 177
            DLR   Q          + T   ++           E S+K      +V+ +F      
Sbjct: 137 CDLRSAIQ----------VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHK 185

Query: 178 VLQ 180
           +  
Sbjct: 186 LKS 188

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  120 bits (302), Expect = 2e-34
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 21/182 (11%)

Query: 9   KCVTVGDGAVGKTCMLISYT--SNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLW--DTA 63
           K   VG+  VGK+ ++  +T   + F  DY  T   +   A V +  +TV++ L+  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 64  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGT 119
           G + Y       + G    +L F + S  S+E+  K W   L+         +  VLV  
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK-TQQNVKTVFDAAIKVV 178
           K DL   +           +     ++         + + S+    ++    F +     
Sbjct: 141 KTDLPPQRH---------QVRLDMAQDWATTNTLD-FFDVSANPPGKDADAPFLSIATTF 190

Query: 179 LQ 180
            +
Sbjct: 191 YR 192

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  117 bits (295), Expect = 8e-34
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRE 125
            +  L P  YR A   L+ + +    S+    + W+ EL   A   + I LVG K D  +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF 171
           +        G   +   +GE+L +  G  ++ E S+KT +NV  VF
Sbjct: 123 E-------GGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVF 160

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  119 bits (299), Expect = 7e-32
 Identities = 36/190 (18%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV---------DGSTVNLG 58
           IK   +GDG  GKT +L      TF      T   N                +       
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 59  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVG 118
            WD  GQE  +         + V++L        +  N    W+  +  Y    P+++V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K D                I   +  E    I    +   S K    V+++  +    V
Sbjct: 158 NKIDENPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSAV 206

Query: 179 LQPPKPKKRK 188
           L P       
Sbjct: 207 LHPDSIYGTP 216

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  111 bits (278), Expect = 6e-31
 Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 52/217 (23%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG-- 58
           M      K V +G+ +VGK+ +++  T +TF  +   T+     +  V ++   +     
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 59  -----------------------------------LWDTAGQEDYNRLRPLSYRGADVFL 83
                                              +WDTAGQE Y  + PL YRGA   +
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 84  LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ 143
           + F + +  + +   K W+ +L+       I+LV  K D     Q          +   +
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ----------VDILE 168

Query: 144 GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
            ++  +     ++I+ S+KT  N+K +F    + + +
Sbjct: 169 VQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 43/194 (22%), Positives = 65/194 (33%), Gaps = 37/194 (19%)

Query: 8   IKCVTVGDGAVGKTCML----------ISYTSNTFPTDYVPTVFDNFSANVV--VDGSTV 55
            K V  G G  GKT  L                +  T+   T+F +F    +  V G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 56  NLGLWDTAGQEDYNRLRPLSYRGAD--VFLL----AFSLISKASYENISKKWIPELRHYA 109
              L+   GQ  YN  R L  RG D  VF+          +  S  N+ +          
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 110 PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--AAVYI-ECSSKTQQN 166
             VPIV+   K+DL          P A P+     E ++ ++       + E  +   + 
Sbjct: 135 -DVPIVIQVNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKG 178

Query: 167 VKTVFDAAIKVVLQ 180
           V        ++VL 
Sbjct: 179 VFETLKEVSRLVLA 192

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 64.6 bits (157), Expect = 6e-13
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 23/159 (14%)

Query: 30  NTFPTDYVPTVFDNFSANVVVDGSTVNLGL----WDTAGQEDY--NRLRPLSYRGADVFL 83
           +     +  T    +              L     D  G E     +  P      D FL
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 84  LAF--SLISKASYENISKKWIPELRHYAPT--VPIVLVGTKQDLREDKQYLINHPGATPI 139
           L    S     ++++   K++  L +       PIV+V TK D   ++           I
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I 216

Query: 140 TTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
             A    L K       +E S+++  NV   F   ++++
Sbjct: 217 RDAHTFALSK--KNLQVVETSARSNVNVDLAFSTLVQLI 253

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           K + +G    GK+ M     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 66  EDY-----NRLRPLSYRGADVFLLAFSLISKASYENIS--KKWIPELRHYAPTVPIVLVG 118
           + +      + +   ++   V +  F + S    ++I    K + +LR Y+P   I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 119 TKQDLREDKQ 128
            K DL +  +
Sbjct: 123 HKMDLVQLDK 132

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 52.7 bits (126), Expect = 6e-09
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
            + + +G    GK+ +         P +      T       + + + S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 65  QEDYNRL---RPLSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGT 119
           Q D+        + +RG    +           E +++    + +     P +   +   
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 120 KQDL-REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
           K D   +D +          I     ++L       +++     +  +  ++F+A  KVV
Sbjct: 138 KVDGLSDDHKIETQR----DIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV 192

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%)

Query: 13  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 72
           +G    GK+ +      N  P D    +    + ++    + ++L + +  GQ +Y    
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 73  PLS---YRGADVFLLAFSLISKASYENISK--KWIPELRHYAPTVPIVLVGTKQDL-RED 126
             S   ++     +             I+     I       P++ I ++  K D   ED
Sbjct: 64  YDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            +          I    GEEL +L    V +     +  +  ++++A  ++V
Sbjct: 123 FKVDA----QRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIV 169

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 52/181 (28%)

Query: 13  VG-DGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANV-VVDGSTVNLGLWDTAGQEDYN 69
           VG   + GKT  +    S  F  D +PTV F     N+  +    V + LWD  GQ    
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP--- 78

Query: 70  RLRPL---SYRGADVFLLAFSLI-------------SKASYENISKKWIPELRHYAPTVP 113
           R R +     RG         ++             SK    N+  K  P+L+     +P
Sbjct: 79  RFRSMWERYCRGVSA------IVYMVDAADQEKIEASKNELHNLLDK--PQLQG----IP 126

Query: 114 IVLVGTKQDLREDKQYLINHPGA-TPITTAQGEELKKLIGAAVYI-ECSSKTQQNVKTVF 171
           ++++G K+DL          PGA       +   L  +    +     S K + N+    
Sbjct: 127 VLVLGNKRDL----------PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

Query: 172 D 172
            
Sbjct: 177 Q 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.8
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.78
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.78
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.7
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.7
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.69
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.67
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.59
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.57
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.54
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.4
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.32
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.91
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.9
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.86
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.86
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.81
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.74
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.62
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.59
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.45
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.41
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.24
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.18
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.09
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.98
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.96
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.82
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.78
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.63
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.62
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.57
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.52
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.51
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.43
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.42
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.41
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.4
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.39
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.38
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.38
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.37
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.36
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.35
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.34
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.34
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.3
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.29
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.27
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.27
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.27
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.24
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.23
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.22
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.21
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.2
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.19
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.19
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.18
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.17
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.16
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.16
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.15
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.14
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.11
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.11
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.1
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.09
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.08
1via_A	175	Shikimate kinase; structural genomics, transferase	97.07
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.07
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.07
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.07
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.07
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.06
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.05
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.05
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.04
1g6h_A	257	High-affinity branched-chain amino acid transport	97.04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.04
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.03
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.02
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.01
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.01
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.01
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.0
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.0
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.99
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.99
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.99
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.99
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.99
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.98
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.98
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.97
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.97
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.95
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.94
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.94
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.94
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.92
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.9
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.89
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.88
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.88
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.87
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.87
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.86
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.82
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.82
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.82
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.81
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.81
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.8
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.79
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.79
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.78
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.78
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.77
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.77
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.74
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.74
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.74
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.74
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.73
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.72
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.72
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.72
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.72
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.72
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.71
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.71
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.71
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.69
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.69
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.69
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.68
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.68
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.65
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.65
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.65
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.64
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.64
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.63
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.63
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.63
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.61
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.61
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.61
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.61
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.57
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.56
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.55
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.54
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.53
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.51
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.5
3bos_A	242	Putative DNA replication factor; P-loop containing	96.49
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.49
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.48
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.47
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.47
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.44
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.44
2og2_A	359	Putative signal recognition particle receptor; nuc	96.44
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.44
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.43
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.42
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.41
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.41
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.41
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.4
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.32
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.3
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.3
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.3
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.28
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.28
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.23
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.22
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.22
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.19
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.18
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.18
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.17
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.17
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.13
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.11
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.11
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.11
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.09
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.05
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.04
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.04
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.04
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.02
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.01
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.0
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.98
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.97
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.93
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.93
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.91
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.9
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.9
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.89
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.89
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.89
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.88
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.87
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.87
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.86
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.86
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.85
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.83
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.83
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.82
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.8
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.79
3co5_A	143	Putative two-component system transcriptional RES	95.78
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.77
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.76
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.76
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.75
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.73
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.71
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.7
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.62
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.62
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.61
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.61
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.6
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.58
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.56
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.55
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.53
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.53
2qgz_A	308	Helicase loader, putative primosome component; str	95.52
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.51
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.51
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.48
2fna_A	357	Conserved hypothetical protein; structural genomic	95.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.45
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.41
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.41
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.4
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.38
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.38

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5e-43  Score=256.06  Aligned_cols=165  Identities=30%  Similarity=0.533  Sum_probs=140.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +.+.+||+|+|++|||||||+++|..+.|...+.+|.. +.+...+..++..+.+++|||+|+++|..+++.++++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            34679999999999999999999999999999999985 56677788899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||+++++||+.+ ..|+..+.... +++|++|||||+|+.+.+.          ++.+++.++++++++ +|+++||
T Consensus        90 ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SA  157 (216)
T 4dkx_A           90 VVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSA  157 (216)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBT
T ss_pred             EEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeC
Confidence            999999999999999 77877776654 6899999999999987654          899999999999998 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+||+++|+.|++.+..
T Consensus       158 ktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          158 KAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             TTTBSHHHHHHHHHHHC--
T ss_pred             CCCcCHHHHHHHHHHHHHh
Confidence            9999999999999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.6e-38  Score=229.35  Aligned_cols=182  Identities=80%  Similarity=1.268  Sum_probs=153.6

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      |+..+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.|...+..+++++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            56667899999999999999999999999988888888877777777788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +++|||++++++++.+...|+..+....++.|+++|+||+|+.+.......  ....+..+++.+++..++..+++++||
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999855899999887788999999999999765431111  112357888999999999779999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCCCcc
Q 029177          162 KTQQNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~~~~  185 (197)
                      ++|+|++++|+++++.+......+
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC----
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999988765544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.5e-36  Score=218.53  Aligned_cols=173  Identities=45%  Similarity=0.819  Sum_probs=154.4

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++++|++
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            44567999999999999999999999999988888888777777888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++|||++++.+++.+...|+..+....++.|+++|+||+|+.+..        .+.+..+++.++++.++..+++++||+
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecC
Confidence            999999999999997678999988888899999999999997532        234788999999999998559999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCC
Q 029177          163 TQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      +|+|++++|+++.+.+...+.
T Consensus       171 ~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TTBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999876654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=221.05  Aligned_cols=164  Identities=31%  Similarity=0.558  Sum_probs=147.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            45799999999999999999999999888888888877777778889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.+++..++. +++++||+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  159 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence            9999999999998 78888877765  3899999999999977543          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+..
T Consensus       160 ~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-36  Score=217.70  Aligned_cols=180  Identities=33%  Similarity=0.571  Sum_probs=146.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999999988888888877777888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.+ ..|...+....  .+.|+++|+||+|+.+.           ....+++.++++.++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSR-----------TVDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSC-----------SSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCccc-----------ccCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 77777776654  58999999999999743           2677888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC------CcccccCCCCCcccC
Q 029177          163 TQQNVKTVFDAAIKVVLQPP------KPKKRKRKARPCIFL  197 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~------~~~~~~~k~~~c~~~  197 (197)
                      +|+|++++|+++.+.+...+      ..+++++++.+|+||
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            99999999999999875432      223344555668775

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.5e-36  Score=214.05  Aligned_cols=173  Identities=28%  Similarity=0.426  Sum_probs=150.0

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      |...+.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++.+|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            45667899999999999999999999998888888888877777788889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      +++|||++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.          +..+++.++++.++. +++++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES  148 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence            9999999999999999 67877776554  4899999999999976543          888999999999998 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCCCCccc
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQPPKPKK  186 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~~~~~~  186 (197)
                      ||++++|++++|+++.+.+...+....
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~  175 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDGACS  175 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC-----
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999987765443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=220.67  Aligned_cols=180  Identities=28%  Similarity=0.478  Sum_probs=143.5

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ...+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            44568999999999999999999999999988888888766666666777778999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++|||++++++++.+ ..|+..+....  .++|+++|+||+|+...+.          +..+++..++...+. +++++|
T Consensus       100 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  167 (201)
T 3oes_A          100 VLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMESS  167 (201)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEEe
Confidence            999999999999999 78888877653  5789999999999986554          788899999999998 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL  197 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~  197 (197)
                      |++|+|++++|+++.+.+.......   .+++.|.+|
T Consensus       168 a~~~~~v~~l~~~l~~~i~~~~~~~---~~~~~c~l~  201 (201)
T 3oes_A          168 ARENQLTQGIFTKVIQEIARVENSY---GQERRCHLM  201 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhhhh---ccccccccC
Confidence            9999999999999999987665543   344457664

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.7e-36  Score=213.56  Aligned_cols=182  Identities=63%  Similarity=1.059  Sum_probs=154.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            34679999999999999999999999998888888887777777888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++.++......|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999998547988888877789999999999997642110  1111224577888999999998778999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCCCcc
Q 029177          162 KTQQNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~~~~  185 (197)
                      ++|+|++++|+++.+.+...+..+
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~k  185 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCPPPVK  185 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred             CCccCHHHHHHHHHHHHhcccccC
Confidence            999999999999999998766543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=5.5e-36  Score=218.93  Aligned_cols=181  Identities=36%  Similarity=0.658  Sum_probs=151.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||++|++.+...+..+++++|++++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            35799999999999999999999999998888888877777777888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+...|+..+....+++|+++|+||+|+.+....  ...+...+.+..+++.++++.++..+++++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            999999999999448999999988889999999999999764110  011122345888999999999998789999999


Q ss_pred             CCCC-HHHHHHHHHHHHcCCCCcc
Q 029177          163 TQQN-VKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       163 ~~~~-i~~~~~~i~~~~~~~~~~~  185 (197)
                      +|+| ++++|+++.+.+.......
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC-----
T ss_pred             CCcccHHHHHHHHHHHHhccCcCC
Confidence            9998 9999999999988765543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.3e-36  Score=216.30  Aligned_cols=179  Identities=87%  Similarity=1.369  Sum_probs=135.5

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      |+..+.+||+++|++|+|||||+++|..+.+...+.+++.+.+...+..++..+.+++||+||++++...+..+++++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            45567899999999999999999999999888888888766555555567777889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+..+++.++++.++..+++++||
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999985579998888777899999999999976543211122233467888999999999778999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+|++++|+++.+.++.
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-35  Score=213.71  Aligned_cols=176  Identities=55%  Similarity=0.998  Sum_probs=152.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++++...+..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            46799999999999999999999999988888888877777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+....  .......+.+..+++.++++.++..+++++||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            999999999999854898888887789999999999999764311  112223345788999999999997789999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.++.
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=8.2e-36  Score=212.97  Aligned_cols=177  Identities=37%  Similarity=0.725  Sum_probs=150.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ....+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.|...+..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45689999999999999999999999998888888887666667778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++++++.+...|...+....++.|+++|+||+|+.++....  ......+.+..+++.++++.++..+++++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999998668888888877889999999999997532100  1112234578889999999998669999999


Q ss_pred             c-CCCCHHHHHHHHHHHHcC
Q 029177          162 K-TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~-~~~~i~~~~~~i~~~~~~  180 (197)
                      + +++|++++|+++.+.+++
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=214.62  Aligned_cols=177  Identities=53%  Similarity=0.909  Sum_probs=144.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.+++.+.+...+..++..+.+++||+||++++...+..+++++|++++
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   97 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL   97 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence            45799999999999999999999999888888888877777778889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.+...|+..+....+++|+++|+||+|+.......  ......+.+..+++..+++.++..+++++||+
T Consensus        98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A           98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL  177 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence            9999999999998547998888877899999999999997642110  11112245778889999999997789999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +|+|++++|+++.+.+...
T Consensus       178 ~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-36  Score=216.88  Aligned_cols=166  Identities=25%  Similarity=0.459  Sum_probs=142.2

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .....+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+++||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            45567999999999999999999999998887777777666666677788889999999999999998888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      ++|||++++.+++.+ ..|...+....   ++.|+++|+||+|+.+.           .+..+++..++..++. +++++
T Consensus        84 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~  150 (199)
T 2gf0_A           84 ILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-----------EVDTREAQAVAQEWKC-AFMET  150 (199)
T ss_dssp             EEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-----------SSCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCcc-----------ccCHHHHHHHHHHhCC-eEEEE
Confidence            999999999999988 55665555432   47899999999999752           2667888889999997 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||++|+|++++|+++.+.+...
T Consensus       151 Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          151 SAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             BTTTTBSHHHHHHHHHHHCSSS
T ss_pred             ecCCCCCHHHHHHHHHHHHhhh
Confidence            9999999999999999987654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.8e-36  Score=214.23  Aligned_cols=168  Identities=29%  Similarity=0.571  Sum_probs=117.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .+..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999888766666664 34456677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||
T Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  152 (183)
T 2fu5_C           85 MLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSA  152 (183)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 67888887764 5899999999999976443          778889999999997 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ++++|++++|.++.+.+.....
T Consensus       153 ~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          153 KANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999998865433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=209.30  Aligned_cols=169  Identities=31%  Similarity=0.561  Sum_probs=147.6

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ....+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988777777764 45566778899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK  153 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            999999999999998 789998888878999999999999987554          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCc
Q 029177          163 TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +|+|++++|+++.+.+...+..
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988654433

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=210.59  Aligned_cols=165  Identities=24%  Similarity=0.420  Sum_probs=141.7

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +..+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+... ..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            345679999999999999999999999998888888887777777788999999999999999988775 5688999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++|||++++++++.+ ..|+..+....    ++.|+++|+||+|+.+.+.          +..+++.++++.++. ++++
T Consensus        96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e  163 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE  163 (187)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence            999999999999998 78888777653    5899999999999976544          788899999999997 8999


Q ss_pred             ecc-cCCCCHHHHHHHHHHHHcC
Q 029177          159 CSS-KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       159 ~Sa-~~~~~i~~~~~~i~~~~~~  180 (197)
                      +|| ++++|++++|+++++.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=3.6e-35  Score=214.58  Aligned_cols=177  Identities=45%  Similarity=0.874  Sum_probs=132.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++++|++++|
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  112 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC  112 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence            57999999999999999999999998888888888777777788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.+++.+...|+..+....+++|+++|+||+|+.......  ......+.+..+++.++++.++..+++++||++
T Consensus       113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~  192 (214)
T 2j1l_A          113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL  192 (214)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCC
Confidence            999999999998558999888877889999999999998653210  011122357888899999999977899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~  182 (197)
                      |+|++++|+++.+.+...+
T Consensus       193 g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          193 HDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TBSHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHhh
Confidence            9999999999999887543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=4e-35  Score=212.81  Aligned_cols=174  Identities=64%  Similarity=1.082  Sum_probs=149.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46799999999999999999999999998888888887778888889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.....|+..+....++.|+++|+||+|+.......  ..+...+.+..+++..+++..+..+++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            9999999999998558999998887889999999999998654211  11122344778899999999998889999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      +|+|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=7.4e-35  Score=204.28  Aligned_cols=163  Identities=27%  Similarity=0.531  Sum_probs=143.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999998888888888777777777888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+.+.          +..+++.++++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999998 6677666654  25899999999999976543          7788889999998555999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|+++.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5e-35  Score=211.91  Aligned_cols=165  Identities=31%  Similarity=0.576  Sum_probs=145.6

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            35679999999999999999999999988777777764 45566777889889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus       103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  170 (201)
T 2ew1_A          103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSA  170 (201)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887765 5799999999999976543          778888999998886 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+|++++|+++.+.+..
T Consensus       171 ~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          171 KESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=7.8e-35  Score=208.07  Aligned_cols=164  Identities=23%  Similarity=0.374  Sum_probs=141.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+.+||+++|++|||||||+++|.++.+...+.++ ...+...+.+++..+.+++||++|++.+.     +++++|+++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            456899999999999999999999999998877777 44556788889999999999999998876     678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++.+++.+ ..|+..+....  +++|+++|+||+|+.+..        .+.+..+++.++++.++..+++++||
T Consensus        91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~Sa  161 (184)
T 3ihw_A           91 FVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETCA  161 (184)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEecC
Confidence            99999999999998 67888887764  579999999999995321        23478899999999998569999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++|+|++++|+++++.+...+
T Consensus       162 ~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          162 TYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999886543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-35  Score=212.64  Aligned_cols=176  Identities=38%  Similarity=0.729  Sum_probs=149.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.|...+..+++++|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            46799999999999999999999999998888888876666667778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++.++++.++..+++++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            9999999999988668888888877889999999999997532100  11122345788899999999986699999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 029177          163 -TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 -~~~~i~~~~~~i~~~~~~  180 (197)
                       +++|++++|+.+.+.+++
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-34  Score=209.23  Aligned_cols=179  Identities=49%  Similarity=0.866  Sum_probs=147.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            45689999999999999999999999888777788766666667888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.......  ......+.+..+++..++...+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK  182 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence            9999999999998668888888877889999999999997653210  11112234778889999999998789999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCC
Q 029177          163 TQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      +|+|++++|+++.+.++.++.
T Consensus       183 ~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          183 TKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             TCTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999886644

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.2e-34  Score=208.39  Aligned_cols=176  Identities=51%  Similarity=0.902  Sum_probs=151.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            35689999999999999999999999988888888766666667888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||+++++++..+...|...+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999998678888888877889999999999997653211  11122345788899999999998789999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+++
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.7e-34  Score=203.10  Aligned_cols=165  Identities=28%  Similarity=0.577  Sum_probs=137.0

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ....+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999988777777764 33445667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999998 78887776654 5799999999999977543          778889999999986 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+|++++|+++.+.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=9.2e-35  Score=207.07  Aligned_cols=163  Identities=33%  Similarity=0.535  Sum_probs=146.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++.+...+..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999999998888888877777788889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|+..+...  ..++|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  163 (183)
T 3kkq_A           96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK  163 (183)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence            9999999999998 6777776543  26899999999999976543          888999999999996 89999999


Q ss_pred             -CCCCHHHHHHHHHHHHc
Q 029177          163 -TQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       163 -~~~~i~~~~~~i~~~~~  179 (197)
                       +++|++++|+++.+.+.
T Consensus       164 ~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          164 DPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             SSCBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence             99999999999998775

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.1e-34  Score=203.29  Aligned_cols=163  Identities=31%  Similarity=0.563  Sum_probs=142.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999998888888887777777778899889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++++++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 77877776654  3899999999999976543          778889999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|+++.+.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=2.5e-34  Score=202.03  Aligned_cols=164  Identities=30%  Similarity=0.540  Sum_probs=142.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34679999999999999999999999888777766664 34456677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.          +..+++.++++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 67877776654 6899999999999976543          677888999999887 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHc
Q 029177          162 KTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~  179 (197)
                      ++|+|++++|++|.+.+.
T Consensus       151 ~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          151 KTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTCTTHHHHHHHHHHTSC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.3e-34  Score=205.47  Aligned_cols=165  Identities=20%  Similarity=0.324  Sum_probs=137.7

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      |...+.+||+++|++|||||||+++|.++.+.. +.++..+.+...+.+++..+.+++||+||++.     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            455678999999999999999999999998876 67777777777788899899999999999986     356788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHY---A-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +++|||++++++++.+ ..|+..+...   . +++|+++|+||+|+.+..        .+.+..+++.+++...+..+++
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence            9999999999999998 6665444332   2 589999999999995311        1237888899999888656999


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++||++|+|++++|+++.+.+...
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.8e-34  Score=202.53  Aligned_cols=165  Identities=35%  Similarity=0.539  Sum_probs=144.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999988777777764 45566777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+.          +..+++.++++..+. +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999988 678887776657899999999999976543          677888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=3.2e-34  Score=203.76  Aligned_cols=166  Identities=31%  Similarity=0.559  Sum_probs=143.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            4579999999999999999999999988777666653 444566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.. ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++..+. +++++||+
T Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  157 (181)
T 2efe_B           90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK  157 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence            99999999999998 78888777765 5899999999999976443          778889999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029177          163 TQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +|+|++++|+++.+.+...+
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          158 TATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCTTHHHHHHHHHHTCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999886544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.9e-35  Score=211.48  Aligned_cols=166  Identities=30%  Similarity=0.525  Sum_probs=140.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++++|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            4579999999999999999999999988777777764 444667778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.          +..+++.++++.++..+++++||+
T Consensus       107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  175 (201)
T 2hup_A          107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK  175 (201)
T ss_dssp             EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence            99999999999998 68888887765 6899999999999976543          778889999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++|++++|+++.+.+...
T Consensus       176 ~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          176 DSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=205.13  Aligned_cols=164  Identities=23%  Similarity=0.373  Sum_probs=130.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC--cccccccCcCCCcEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF   82 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~   82 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.....+.+...+.+++..+.+++||+||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999987765544443455566778899889999999999987  566677788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++|||++++.+++.+ ..|...+....  ++.|+++|+||+|+.+.+.          +..+++..++..++. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999998 67877776653  5899999999999976543          777888899999986 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~  180 (197)
                      |++|+|++++|+++.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.3e-34  Score=208.04  Aligned_cols=164  Identities=29%  Similarity=0.584  Sum_probs=144.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      .+..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45679999999999999999999999988877777764 44456677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.+++...+. +++++||
T Consensus        85 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSA  152 (206)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 77888887665 5799999999999976543          778888999999887 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHc
Q 029177          162 KTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~  179 (197)
                      ++|+|++++|.++.+.+.
T Consensus       153 ~~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          153 LDSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999998774

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.6e-34  Score=205.15  Aligned_cols=167  Identities=31%  Similarity=0.533  Sum_probs=146.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+.+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            34689999999999999999999999998888888887776777888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPEL-RHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  153 (181)
T 2fn4_A           86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  153 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            99999999999998 6676666 3332 5899999999999977543          778888999998887 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++|+|++++|+++.+.+...+
T Consensus       154 ~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999886443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=210.08  Aligned_cols=168  Identities=30%  Similarity=0.520  Sum_probs=138.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+|+|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            4579999999999999999999999988777777664 444566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.          +..+++..+++..+. +++++||+
T Consensus        91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  158 (223)
T 3cpj_B           91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL  158 (223)
T ss_dssp             EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887764 5799999999999976543          777888999999886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCc
Q 029177          163 TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +++|++++|+++.+.+......
T Consensus       159 ~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988755433

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=8.3e-35  Score=211.13  Aligned_cols=165  Identities=30%  Similarity=0.541  Sum_probs=139.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ....+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            3468999999999999999999999998877777776 455566677788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|||++++.++..+ ..|+..+....     .+.|+++|+||+|+.+.           .+..+++..++......+++
T Consensus        85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~  152 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-----------QVATKRAQAWCYSKNNIPYF  152 (207)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-----------CSCHHHHHHHHHHTTSCCEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCccc-----------ccCHHHHHHHHHhcCCceEE
Confidence            999999999999988 77877665543     47899999999999732           26677888888855545899


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++||++|+|++++|+++.+.+..
T Consensus       153 ~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          153 ETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999987754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=7.5e-35  Score=206.47  Aligned_cols=168  Identities=28%  Similarity=0.427  Sum_probs=143.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECC-eEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.+||+++|++|||||||+++|.++.+...+.++. .+.+...+.+++ ..+.+++||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            4567999999999999999999999988766666665 355566677776 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA---PTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +++|||++++.+++.+ ..|+..+....   .+.| +++|+||+|+.+.+.          +..+++.++++.++. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999988 78887776643   2455 899999999976543          778888999999997 899


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ++||++|+|++++|+++.+.+...+.
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999876654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=206.04  Aligned_cols=168  Identities=30%  Similarity=0.618  Sum_probs=147.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            457999999999999999999999998887777776 4555677788998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++.+++..++. +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999998 77888887765 5799999999999976544          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCc
Q 029177          163 TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +++|++++|+++.+.+......
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999988755443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=6.1e-34  Score=203.22  Aligned_cols=165  Identities=28%  Similarity=0.528  Sum_probs=144.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999988777777764 445667778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.+++...+. +++++||+
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  155 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999998 77877776654 6899999999999976543          777888999999986 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++|++++|+++.+.+...
T Consensus       156 ~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.5e-33  Score=202.02  Aligned_cols=164  Identities=31%  Similarity=0.614  Sum_probs=144.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            4579999999999999999999999988777777664 333456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus       100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  167 (189)
T 2gf9_A          100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK  167 (189)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 77888887765 5899999999999976543          677888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+.+
T Consensus       168 ~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          168 ENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=6.2e-34  Score=201.56  Aligned_cols=169  Identities=34%  Similarity=0.625  Sum_probs=141.4

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA   79 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   79 (197)
                      |-.....+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (177)
T 1wms_A            1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS   80 (177)
T ss_dssp             -CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred             CCCccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence            34556789999999999999999999999988777777764 44466777888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      |++++|||++++.++..+ ..|+..+....     .+.|+++|+||+|+.+ +          .+..+++.++++.....
T Consensus        81 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~----------~~~~~~~~~~~~~~~~~  148 (177)
T 1wms_A           81 DCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-R----------QVSTEEAQAWCRDNGDY  148 (177)
T ss_dssp             SEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-C----------SSCHHHHHHHHHHTTCC
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-c----------ccCHHHHHHHHHhcCCc
Confidence            999999999999999988 77877776543     5789999999999973 2          26778888998855556


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++++||++|+|++++|+++.+.+.+.
T Consensus       149 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          149 PYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            899999999999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1e-33  Score=199.04  Aligned_cols=163  Identities=24%  Similarity=0.532  Sum_probs=143.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999988777777764 344566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  151 (170)
T 1z0j_A           84 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK  151 (170)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887764 6899999999999986543          778888999999886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029177          163 TQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~  179 (197)
                      +++|++++|+++.+.+.
T Consensus       152 ~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          152 NAININELFIEISRRIP  168 (170)
T ss_dssp             TTBSHHHHHHHHHHHCC
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.8e-34  Score=202.27  Aligned_cols=164  Identities=30%  Similarity=0.589  Sum_probs=143.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988777777764 444566677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (179)
T 1z0f_A           93 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAK  160 (179)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888777665 6899999999999976543          778889999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+.+
T Consensus       161 ~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          161 TGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TCTTHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.5e-34  Score=204.63  Aligned_cols=164  Identities=29%  Similarity=0.576  Sum_probs=140.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988777666653 444566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||+
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  166 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK  166 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 67888877664 5899999999999976543          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+.+
T Consensus       167 ~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.8e-34  Score=201.88  Aligned_cols=163  Identities=24%  Similarity=0.408  Sum_probs=129.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc-ccccCcCCCcEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFLL   84 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~   84 (197)
                      .+||+++|++|||||||+++|.+..+...+.++. .+.+...+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999766554443333 556667778899999999999999998876 67777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAP--TVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|+..+....+  ++|+++|+||+|+.+.+.          +..+++.++++..+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999999 777777776653  899999999999986554          888999999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++|++++|+++.+.+..+
T Consensus       150 ~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhc
Confidence            9999999999999987543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6.7e-34  Score=199.82  Aligned_cols=165  Identities=32%  Similarity=0.560  Sum_probs=142.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            458999999999999999999999988777777764 4445667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+....       ..+.+..+++.+++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc-------cccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 67887777665 689999999999997642       1234778888999999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|+++.+.+.
T Consensus       153 ~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988664

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=3.6e-34  Score=200.79  Aligned_cols=161  Identities=22%  Similarity=0.382  Sum_probs=119.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|.+..+. ...++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            489999999999999999999876543 3334444555667788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.          +..+++..++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  148 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence            99999999998 66777766543  6899999999999976544          788899999999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|+++.+.+..
T Consensus       149 ~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          149 HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.1e-34  Score=202.63  Aligned_cols=165  Identities=33%  Similarity=0.558  Sum_probs=143.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +.+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999888777777764 55567777889889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus        91 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  158 (179)
T 2y8e_A           91 VVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSA  158 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999988 67777776544 5899999999999976543          777888899999986 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++++|++++|+++.+.+..
T Consensus       159 ~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          159 KAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTTBSHHHHHHHHHHTCC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=4.6e-34  Score=203.69  Aligned_cols=164  Identities=31%  Similarity=0.558  Sum_probs=145.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ...+||+++|++|||||||+++|.++.+...+.+++...+...+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            46799999999999999999999999888888888877777778889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|+..+....  .++|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  163 (187)
T 2a9k_A           96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  163 (187)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence            9999999999998 77777776655  3899999999999976543          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          164 TRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-33  Score=199.50  Aligned_cols=165  Identities=36%  Similarity=0.616  Sum_probs=134.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      +..+||+++|++|||||||+++|.++.+. ..+.++.. +.....+.+++..+.+++||+||++.+...+..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            46799999999999999999999998875 35556654 33344557788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||
T Consensus        88 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  155 (180)
T 2g6b_A           88 LLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSA  155 (180)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 78888887765 5899999999999976543          777888999999987 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++++|++++|+++.+.+...
T Consensus       156 ~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          156 KTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             TTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-34  Score=207.99  Aligned_cols=165  Identities=24%  Similarity=0.428  Sum_probs=135.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   81 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~   81 (197)
                      ...+||+|+|++|||||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            45799999999999999999999963  3444444444556677778899999999999999876 55566778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      +++|||++++++|+.+ ..|...+...  .+++|+++|+||+|+.+.+.          +..+++..++..++. +++++
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~  182 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET  182 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 6777766643  25799999999999976543          777888889988987 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||++|+|++++|+++.+.+...
T Consensus       183 SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          183 SAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-34  Score=207.55  Aligned_cols=164  Identities=27%  Similarity=0.484  Sum_probs=143.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++. ...+..+++.+|+++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4567999999999999999999999999888888888777777788899889999999999988 667778889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++++++.+ ..|+..+....  +++|+++|+||+|+.+.+.          +..+++.++++.++. +++++||
T Consensus       104 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  171 (196)
T 2atv_A          104 LVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSA  171 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEECC
Confidence            99999999999998 67777776543  5899999999999977543          778889999999986 8999999


Q ss_pred             cCCC-CHHHHHHHHHHHHcC
Q 029177          162 KTQQ-NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~-~i~~~~~~i~~~~~~  180 (197)
                      ++|+ |++++|+++.+.+.+
T Consensus       172 ~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          172 CTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             TTCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCcCHHHHHHHHHHHHHh
Confidence            9999 999999999998854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.3e-34  Score=200.70  Aligned_cols=162  Identities=30%  Similarity=0.568  Sum_probs=142.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999998888888887776777788899889999999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.+++.+ ..|...+....  .+.|+++|+||+|+...+.          +..+++.++++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999998 66666665543  5899999999999976543          777888999999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|+++.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998763

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=203.86  Aligned_cols=164  Identities=30%  Similarity=0.538  Sum_probs=143.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++++...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            4579999999999999999999999988777767653 444566777888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..++...+. +++++||+
T Consensus       103 ~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  170 (193)
T 2oil_A          103 LVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSAL  170 (193)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 67888777654 5899999999999976543          677888999999887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+.+
T Consensus       171 ~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          171 DSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=207.04  Aligned_cols=166  Identities=24%  Similarity=0.414  Sum_probs=137.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEecCCCcCccc-ccccCcCCCcEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   82 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~   82 (197)
                      ...+||+++|++|||||||+++|.+......+.++ +.+.+...+.+++..+.+++||++|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            45799999999999999999999764332222333 3455566778899999999999999988764 677778899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++|||++++.+++.+ ..|+..+....  .++|+++|+||+|+.+.+.          +..+++.++++.++. +++++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999998 77888777654  4899999999999976443          778889999999986 899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCCC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      |++++|++++|+++++.+...+
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999886543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=203.47  Aligned_cols=165  Identities=25%  Similarity=0.521  Sum_probs=143.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4579999999999999999999999988777777764 333455667778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  168 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK  168 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887765 5899999999999976443          778889999999986 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++|++++|+++.+.+...
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC--
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999977543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=208.22  Aligned_cols=164  Identities=30%  Similarity=0.556  Sum_probs=135.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999999888777777664 444566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++.++++..+. +++++||+
T Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA~  170 (200)
T 2o52_A          103 LVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSAL  170 (200)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 77887776654 6899999999999976543          777888999999886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+..
T Consensus       171 ~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          171 TGENVEEAFLKCARTILN  188 (200)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-33  Score=203.01  Aligned_cols=164  Identities=28%  Similarity=0.608  Sum_probs=144.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4579999999999999999999999988777777764 444566777888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++.++++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
T 1zbd_A           86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK  153 (203)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence            99999999999998 77888887765 5899999999999976443          778889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+..
T Consensus       154 ~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          154 DNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=205.73  Aligned_cols=165  Identities=30%  Similarity=0.554  Sum_probs=137.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+++||+||++.+...+..+++++|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            457999999999999999999999988877766666 3555666778888899999999999999988889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++.++++..+..+++++||+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence            99999999999998 78888887765 4799999999999976543          777888899988644599999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=7e-34  Score=199.84  Aligned_cols=163  Identities=32%  Similarity=0.628  Sum_probs=137.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999988777777664 3445566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.           .+..+++.++++.++. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-----------CSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-----------ccCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999988 78888877765 58999999999999432           2677888999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029177          164 QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~  181 (197)
                      |+|++++|.++.+.+...
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=2.5e-33  Score=200.84  Aligned_cols=164  Identities=36%  Similarity=0.562  Sum_probs=135.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|.+|||||||+++|.++.+...+.+++...+...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            46799999999999999999999999888777787777777778888988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+...           .+..+++.++++.++. +++++||+
T Consensus        99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~  165 (190)
T 3con_A           99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTR-----------TVDTKQAHELAKSYGI-PFIETSAK  165 (190)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCcc-----------cCCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 78887776654  47999999999999752           2677888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++|++++|+++.+.+...
T Consensus       166 ~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          166 TRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=6.6e-34  Score=202.07  Aligned_cols=168  Identities=33%  Similarity=0.576  Sum_probs=127.9

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEEC-CeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      .....+||+++|++|||||||+++|.++.+...+.++.. +.....+.++ +..+.+++||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            345689999999999999999999999988777777763 4445555555 55688999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ++++|||++++.+++.+ ..|+..+....     .+.|+++|+||+|+.+...         .+..+++.++++..+..+
T Consensus        84 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~  153 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIP  153 (182)
T ss_dssp             EEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCC
T ss_pred             EEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCe
Confidence            99999999999999998 77877766543     5789999999999964322         367788889988665568


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++++||++|+|++++|+++.+.+.+
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          154 LFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.8e-34  Score=205.15  Aligned_cols=171  Identities=33%  Similarity=0.511  Sum_probs=136.8

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ..+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            35679999999999999999999999988777767664 44456677888889999999999999998888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+....    ...+.+..+++..++...+. +++++||
T Consensus       105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~SA  178 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETSA  178 (199)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence            999999999999998 77888887665 57999999999999743210    12234778888999999997 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+|++++|.++.+.+..
T Consensus       179 ~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.7e-34  Score=199.35  Aligned_cols=163  Identities=26%  Similarity=0.503  Sum_probs=140.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+++||+||++++...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            46899999999999999999999998877777777666666677788889999999999999998888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           86 FSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      ||++++.+++.. ..|...+....   ++.|+++|+||+|+.+.+.          +..+++..++..++. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999888 66666665432   5799999999999976543          677888889998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++.+.+..
T Consensus       150 ~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCS
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999987643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.6e-33  Score=202.03  Aligned_cols=164  Identities=32%  Similarity=0.572  Sum_probs=141.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee--eEEEEECCe---------EEEEEEEecCCCcCcccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF--SANVVVDGS---------TVNLGLWDTAGQEDYNRLRP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~~   73 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++....+  ...+..++.         .+.+++||+||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            4579999999999999999999999988777777764333  344555554         78999999999999999999


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .+++++|++++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.+++..+
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence            999999999999999999999998 68888877665  5899999999999976543          7778889999999


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +. +++++||++++|++++|++|.+.+..
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            97 89999999999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=5.3e-33  Score=200.83  Aligned_cols=165  Identities=25%  Similarity=0.460  Sum_probs=139.4

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeE--------------------------
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGST--------------------------   54 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------------   54 (197)
                      |...+.+||+++|++|||||||+++|+++.+...+.++.. +.....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            4566789999999999999999999999988877777763 3444555555544                          


Q ss_pred             -----------EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177           55 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDL  123 (197)
Q Consensus        55 -----------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  123 (197)
                                 +.+.+||+||++.+...+..+++.+|++++|||++++.++..+ ..|+..+..... .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence                       8899999999999999999999999999999999999999998 788888876543 99999999999 


Q ss_pred             ccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ....          .+..+++.++++..+. +++++||++++|++++|+++.+.+.+
T Consensus       159 ~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKF----------QVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-C----------CSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccc----------cCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            3322          2678889999999987 99999999999999999999988753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.1e-33  Score=198.98  Aligned_cols=164  Identities=29%  Similarity=0.600  Sum_probs=144.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            579999999999999999999999988877777763 4445667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.++..+ ..|+..+....  .++|+++|+||+|+.+.           .+..+++.++++..+. +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-----------EVDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-----------CSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCccc-----------ccCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999998 78888887764  57999999999999542           2677888999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029177          163 TQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +++|++++|+++.+.+...+
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSG
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999887653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.4e-33  Score=200.90  Aligned_cols=163  Identities=28%  Similarity=0.526  Sum_probs=139.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcc-cccccCcCCCcEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF   82 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~   82 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            4579999999999999999999999988777777664 4456677788888999999999999888 7888889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.++++..+. +++++|
T Consensus        98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  165 (189)
T 1z06_A           98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS  165 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence            999999999999998 67888877764  5899999999999976543          778889999999987 899999


Q ss_pred             ccCC---CCHHHHHHHHHHHHc
Q 029177          161 SKTQ---QNVKTVFDAAIKVVL  179 (197)
Q Consensus       161 a~~~---~~i~~~~~~i~~~~~  179 (197)
                      |+++   +|++++|.++.+.+.
T Consensus       166 a~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC----
T ss_pred             CCcCCcccCHHHHHHHHHHHHh
Confidence            9999   999999999988763

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=208.02  Aligned_cols=165  Identities=30%  Similarity=0.593  Sum_probs=144.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.++.+...+.++.. +.....+..++..+.+++||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4579999999999999999999999888777666663 444556667777789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  168 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK  168 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 77888888766 6899999999999976554          788889999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +|+|++++|+++.+.+...
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          169 ENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999987543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.7e-33  Score=193.74  Aligned_cols=162  Identities=35%  Similarity=0.583  Sum_probs=142.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            35899999999999999999999998887777877777777778888889999999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.++..+ ..|+..+....  .+.|+++|+||+|+...           ....+++.++++.++. +++++||++
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAAR-----------TVESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhc-----------ccCHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999998 77887777654  37999999999999762           2667888999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      ++|++++|+++.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=8.8e-34  Score=205.69  Aligned_cols=165  Identities=25%  Similarity=0.365  Sum_probs=108.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEecCCCcCcccccccCcCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYRGA   79 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~   79 (197)
                      ...+||+++|++|||||||+++|.++  .+...+.+++. +.....+.+++.  .+.+++||+||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999998  77777777774 566677778876  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCCccc-chhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYAP----TVPIVLVGTKQDLRE-DKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      |++++|||++++.+++.+ ..|+..+....+    +.|+++|+||+|+.+ .+.          +..+++.++++.++. 
T Consensus        98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~-  165 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL-  165 (208)
T ss_dssp             CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-
T ss_pred             cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-
Confidence            999999999999999999 688888887654    899999999999976 443          778899999999996 


Q ss_pred             EEEEecccC-CCCHHHHHHHHHHHHcCC
Q 029177          155 VYIECSSKT-QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       155 ~~~~~Sa~~-~~~i~~~~~~i~~~~~~~  181 (197)
                      +++++||++ ++|++++|+++.+.+...
T Consensus       166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          166 DFFDVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             EEEECCC-------CHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence            899999999 999999999999987643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.1e-32  Score=198.27  Aligned_cols=165  Identities=24%  Similarity=0.443  Sum_probs=132.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC-cccccccCcCCCcE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   81 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~   81 (197)
                      ...+||+++|++|||||||+++|.+  ..+...+.++..+.+...+.+++..+.+.+||++|+.. +...+..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4569999999999999999999996  34444444444556667788899999999999999876 55566777888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      +++|||++++++|+.. ..|...+....  ++.|+++|+||+|+...+.          +..+++..++...+. +++++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999998 67777666542  5799999999999976443          677788888888886 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||++|+|++++|+++.+.+...
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999987543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=9.8e-34  Score=203.73  Aligned_cols=165  Identities=24%  Similarity=0.291  Sum_probs=132.5

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------cee-eeeeEEE-EECCeEEEEEEEecCCCcCcc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-----------TVF-DNFSANV-VVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-----------~~~-~~~~~~~-~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ...+.+||+++|++|||||||++.+. +.+...+.+           +.. +.....+ .+++..+.+++||+||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            34568999999999999999996554 445444332           332 2222223 456778899999999999999


Q ss_pred             cccccCcCCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLI------SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ  143 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      ..+..+++++|++++|||++      +.+++..+ ..|+..+....+++|+++|+||+|+.+.            +..++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~  155 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM  155 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence            99999999999999999999      55677776 6677777555578999999999999653            67788


Q ss_pred             HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          144 GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       144 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +.++++..+..+++++||++|+|++++|+++.+.+...
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            99999999876899999999999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.9e-33  Score=204.59  Aligned_cols=165  Identities=36%  Similarity=0.609  Sum_probs=140.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCe----------EEEEEEEecCCCcCcccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGS----------TVNLGLWDTAGQEDYNRLRP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~   73 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++.          .+.+++||+||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            4679999999999999999999999888766666654 333445556655          68899999999999998899


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .+++.+|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++.++++.+
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~  171 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKY  171 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHHC
Confidence            999999999999999999999998 68887776654  5899999999999976543          7788899999999


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +. +++++||++++|++++|+++.+.+...
T Consensus       172 ~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          172 GI-PYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            87 899999999999999999999987653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-32  Score=198.54  Aligned_cols=163  Identities=33%  Similarity=0.635  Sum_probs=140.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+++||+||++.+...+..+++.+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3468999999999999999999999988777777664 444566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.. +          .+..+++..++..++. +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~----------~~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-R----------VVTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-C----------CSCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-c----------ccCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888877765 4799999999999943 2          2677888899999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+..
T Consensus       165 ~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=6.2e-32  Score=209.13  Aligned_cols=176  Identities=63%  Similarity=1.072  Sum_probs=152.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++.+...+..+++.+|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            45899999999999999999999999988888888777777888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh--hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY--LINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.++..+...|...+....+++|+++|+||+|+.+....  .......+.+..+++..+++..+..+++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999855788888887778999999999999754210  0111122457888999999999977899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029177          164 QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~  181 (197)
                      |+|++++|+++.+.++.+
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.3e-33  Score=202.96  Aligned_cols=170  Identities=28%  Similarity=0.434  Sum_probs=138.6

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEE-CCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      .....+||+++|++|||||||+++|.++.+...+.++... ........ ++..+.+.+||+||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            4556899999999999999999999998877666666533 33333333 344488999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      ++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++
T Consensus        87 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  154 (218)
T 4djt_A           87 GAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEI  154 (218)
T ss_dssp             EEEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEE
T ss_pred             EEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEE
Confidence            99999999999999998 68888877665 4599999999999976544          778888889888887 89999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      ||++|+|++++|+++.+.+......
T Consensus       155 Sa~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          155 SAKTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             BTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             ecCCCCCHHHHHHHHHHHHhccccc
Confidence            9999999999999999998765544

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=9.2e-32  Score=193.84  Aligned_cols=168  Identities=15%  Similarity=0.129  Sum_probs=124.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ....||+|+|++|||||||+++|.++.+.. .+.+|.... ...+...+  +.+++||+||++.+...+..+++++|+++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            467899999999999999999999998877 667776422 22333333  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-HHHcCC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA---------PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-KKLIGA  153 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  153 (197)
                      +|||+++++++..+ ..|+..+....         +++|+++|+||+|+.....       ...+........ ++..+ 
T Consensus        92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-  162 (199)
T 4bas_A           92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP-  162 (199)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC-
T ss_pred             EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe-
Confidence            99999999999998 55655554331         2799999999999976421       000111111111 13345 


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      .+++++||++|+|++++|++|.+.+.....+
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            4899999999999999999999988765443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=7.7e-33  Score=202.99  Aligned_cols=166  Identities=27%  Similarity=0.468  Sum_probs=141.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ...+||+++|++|||||||+++|+.+.+...+.++. .+.......+++..+.+++||+||++.+...+..+++++|+++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            457999999999999999999988777666666665 3555666778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||++++.++..+ ..|+..+....+++|+++|+||+|+.+...           . .+...+++..+. +++++||++
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~  158 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAKS  158 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999999 789998888878999999999999976431           1 244567777786 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCc
Q 029177          164 QQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      |.|++++|+++.+.+......
T Consensus       159 ~~gi~~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGDPNL  179 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTCTTC
T ss_pred             CCCHHHHHHHHHHHHHhCccc
Confidence            999999999999998766543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=211.93  Aligned_cols=174  Identities=64%  Similarity=1.090  Sum_probs=146.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+...+.+++.+.+...+.+++..+.+++||+||++++...+..+++++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            46799999999999999999999999888888888777666667778888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.+++.....|+..+....++.|+++|+||+|+.+.....  ......+.+..+++.++++..+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            9999999999998548888888766789999999999997643210  00111124666778888888887689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      +|+|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=206.80  Aligned_cols=164  Identities=30%  Similarity=0.616  Sum_probs=132.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            4579999999999999999999999888766656553 445567778898899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..++..++. +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999999 77888887665 4799999999999976543          555566788888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++|++++|+++.+.+..
T Consensus       179 ~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             --HHHHHHHHHHTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=2.7e-31  Score=191.78  Aligned_cols=157  Identities=20%  Similarity=0.239  Sum_probs=120.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.... ...+.+++  +.+++||+||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988764 455554332 34566777  788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-----------
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-----------  151 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  151 (197)
                      |||+++++++... ..|+..+...  ..+.|+++|+||+|+...            +..+++.++....           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999998 6666665543  258999999999999652            5666666665532           


Q ss_pred             -----CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          152 -----GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       152 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                           ...+++++||++|+|++++|+++.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                 335899999999999999999998643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=9.7e-31  Score=187.69  Aligned_cols=155  Identities=16%  Similarity=0.233  Sum_probs=123.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+. .+.++... ....+.+++  +.+++||+||++.++..+..+++.+|++++|
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            4679999999999999999999998774 45555433 245566777  7889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-----------C
Q 029177           86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-----------G  152 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  152 (197)
                      ||++++++++.. ..|+..+...  ..+.|+++|+||+|+.+.            +..+++.+.....           .
T Consensus        98 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T 1m2o_B           98 VDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQR  164 (190)
T ss_dssp             EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred             EECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCccccccccccccc
Confidence            999999999998 5666655442  258999999999999752            4555555554321           3


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHH
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ..+++++||++|+|++++|+++.+.
T Consensus       165 ~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          165 PVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             eEEEEEeECCcCCCHHHHHHHHHhh
Confidence            3589999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=8.8e-31  Score=184.21  Aligned_cols=164  Identities=13%  Similarity=0.179  Sum_probs=123.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+. .+.++.. .....+.+++  +.+++||+||++.+...+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG-FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS-EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc-cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            35689999999999999999999998874 3445543 2234455665  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++.++... ..|+..+....  .+.|+++|+||+|+.+...       ...+.......++...+. +++++||+
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  151 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT  151 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence            9999999999988 45554443322  5899999999999976421       000111111112223344 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029177          163 TQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~  181 (197)
                      +|+|++++|+++.+.+...
T Consensus       152 ~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhc
Confidence            9999999999999987543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.3e-31  Score=187.66  Aligned_cols=163  Identities=16%  Similarity=0.216  Sum_probs=122.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+. .+.+|.. .....+.+++  +.+++||+||++++...+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45799999999999999999999988775 4445543 2234455666  788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (197)
                      |||++++++++.. ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+...     ..+ .+++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence            9999999999998 6676666554  258999999999999653            33344433332     223 4899


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCCCCcc
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQPPKPK  185 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  185 (197)
                      ++||++|+|++++|+++.+.+.......
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999886665443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1.9e-30  Score=185.18  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=124.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++. ...+.+|... ....+.+++  +.+++||+||++++...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF-NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE-EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            467999999999999999999999887 5566666542 234455565  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (197)
                      |||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+..            ..++..+...     ..+ .+++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHH-WRIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence            9999999999998 5565555433  2589999999999997632            2233222221     223 4899


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++||++|+|++++|+++.+.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999987543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=187.34  Aligned_cols=159  Identities=15%  Similarity=0.219  Sum_probs=125.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+||+++|++|||||||+++|.++. +...+.++.. .....+.+++  +.+.+||+||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            357999999999999999999999876 5555655553 3344555565  68889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH--Hc--CCcE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK--LI--GAAV  155 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~  155 (197)
                      +|||++++.++..+ ..|+..+....    .+.|+++|+||+|+...            ...++..++..  ..  ...+
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~  162 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPWH  162 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCceE
Confidence            99999999999998 55655554432    47999999999999653            34455555543  21  1348


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHc
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++++||++|+|++++|+++.+.+.
T Consensus       163 ~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          163 ICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEEccCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=8.4e-32  Score=188.31  Aligned_cols=154  Identities=15%  Similarity=0.196  Sum_probs=118.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+.. +.||.. .....+...+  +.+++||+||++.+...+..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887753 455543 2233333444  788999999999999888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-H----HHHcCCcEEEEec
Q 029177           88 LISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-L----KKLIGAAVYIECS  160 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~S  160 (197)
                      +++++++... ..|+..+...  .++.|+++|+||+|+.+..            ..++... +    ++..+ .+++++|
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S  142 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC  142 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence            9999999988 5666555432  2589999999999996531            1122211 1    11223 4799999


Q ss_pred             ccCCCCHHHHHHHHHHHHc
Q 029177          161 SKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~  179 (197)
                      |++|+|++++|+++.+.+.
T Consensus       143 a~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC-
T ss_pred             cCCCcCHHHHHHHHHHHHh
Confidence            9999999999999998774

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.9e-30  Score=185.77  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=123.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+|+|++|||||||+++|.++.+...+.++....+. .+...+  +.+++||+||++++...+..+++++|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            45799999999999999999999999887777777644433 233444  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-H---cCCcEEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-L---IGAAVYIE  158 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  158 (197)
                      |||++++++++.+ ..|+..+...  ..+.|+++|+||+|+...            ...++..+... .   ....++++
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGA------------LDEKELIEKMNLSAIQDREICCYS  163 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccC------------CCHHHHHHHhChhhhccCCeeEEE
Confidence            9999999999998 5555554432  258999999999999753            12222211111 1   12347999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +||++|+|++++|+++.+.+..
T Consensus       164 ~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          164 ISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999987744

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=5.2e-31  Score=189.91  Aligned_cols=167  Identities=13%  Similarity=0.184  Sum_probs=122.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEE-CCeEEEEEEEecCCCcCccccc---ccCcCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYRGA   79 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~   79 (197)
                      .+.+||+++|++|||||||++++.+. +........ .........+ ++..+.+++||+||++.|....   ..+++++
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            46799999999999999999987764 322211111 1111222233 3566889999999999987766   7889999


Q ss_pred             cEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----HcCC
Q 029177           80 DVFLLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LIGA  153 (197)
Q Consensus        80 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  153 (197)
                      |++++|||++++  +++..+ ..|+..+....+++|+++|+||+|+.......   ...+.+..+++.++++    ..+.
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             CEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcCCc
Confidence            999999999998  666666 56777766566799999999999986532100   0001256667778888    5665


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHH
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                       +++++||++ +|++++|..+++.+
T Consensus       173 -~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 -SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             -ceEEEEech-hhHHHHHHHHHHHh
Confidence             899999999 99999999999875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.9e-31  Score=190.75  Aligned_cols=157  Identities=12%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|..+.+. .+.+|.. .....+...+  +.+++||+||++.+...+..+++++|++++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            46799999999999999999999988764 3333332 2233444555  788999999999999999899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH-----HHHcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL-----KKLIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (197)
                      |||++++++++.. ..|+..+....  ++.|+++|+||+|+.+.            ...++..+.     +...+ .+++
T Consensus       103 v~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~  168 (192)
T 2b6h_A          103 VVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNA------------MPVSELTDKLGLQHLRSRT-WYVQ  168 (192)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCSSCC-EEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEE
Confidence            9999999999998 56666554322  58999999999999653            111221111     11223 3799


Q ss_pred             EecccCCCCHHHHHHHHHHHHc
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++||++|+|++++|+++.+.+.
T Consensus       169 ~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          169 ATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHTT
T ss_pred             ECcCCCcCCHHHHHHHHHHHHh
Confidence            9999999999999999998774

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=7.9e-31  Score=187.72  Aligned_cols=158  Identities=19%  Similarity=0.199  Sum_probs=122.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|..+.+.. +.+|.. .....+..++  +.+++||+||++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            467999999999999999999999877643 444433 2233455555  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-----HHHHcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-----LKKLIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  157 (197)
                      |||+++++++... ..|+..+....  ++.|+++|+||+|+.+..            ..++..+     .+...+ .+++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRT-WTIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence            9999999999988 55555544332  589999999999997642            1122221     112233 3799


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++||++++|++++|+++.+.+..
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EccCCCccCHHHHHHHHHHHHHh
Confidence            99999999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.5e-30  Score=185.20  Aligned_cols=155  Identities=17%  Similarity=0.244  Sum_probs=120.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+ ..+.++... ....+.+++  +.+++||+||++.+...+..+++++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS-SCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce-eeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999999877 344444432 234455666  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-----HcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-----LIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (197)
                      |||++++++++.+ ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+...     ..+ .+++
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ  160 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCc-eEEE
Confidence            9999999999998 5555555443  268999999999999653            23333333321     223 3899


Q ss_pred             EecccCCCCHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++||++|+|++++|+++.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=2.1e-29  Score=181.84  Aligned_cols=164  Identities=33%  Similarity=0.578  Sum_probs=139.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.+..+...+.++.. +.....+.+++..+.+++||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            3468999999999999999999999988777777663 445667888999899999999999999888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||+++..+++.+ ..|+..+.... .+.|+++++||+|+.+...          +..++++.++...+. +++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999887 67777666543 5789999999999976543          667888999998886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      ++.|++++|+++.+.+..
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=2.4e-31  Score=189.88  Aligned_cols=166  Identities=22%  Similarity=0.320  Sum_probs=121.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCcee-eeeeEEEEE---CCeEEEEEEEecCCCcCcccccccCcCCCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   80 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   80 (197)
                      .+||+++|++|||||||+++|.+.  .+...+.+|.. +.....+.+   ++..+.+++||++|++.|...++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999984  55555666653 333333322   235678999999999999988888999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc---HHHHHHHHHHcCCc--
Q 029177           81 VFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT---TAQGEELKKLIGAA--  154 (197)
Q Consensus        81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  154 (197)
                      ++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+...          +.   .+.+..+++.++..  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999997 578887 788888877667899999999999976442          22   34456667667763  


Q ss_pred             -EEEEecccCCC-CHHHHHHHHHHHHcCCCC
Q 029177          155 -VYIECSSKTQQ-NVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       155 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~~  183 (197)
                       +++++||+++. +++++++.+.+.+...+.
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence             38999999996 999999999998866543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.4e-30  Score=184.27  Aligned_cols=158  Identities=20%  Similarity=0.262  Sum_probs=119.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+ ..+.++.. .....+.+++  +.+++||+||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC-eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            5679999999999999999999998754 23333332 2233455565  788899999999999888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH-----HHcCCcEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK-----KLIGAAVYI  157 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (197)
                      |||++++++++.. ..|+..+...  ..+.|+++|+||+|+.+..            ..++..+..     ...+ .+++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRV-WQIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence            9999999999998 5666555432  2589999999999997532            222222211     1123 4799


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++||++|+|++++|+++.+.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=5.2e-30  Score=182.33  Aligned_cols=158  Identities=15%  Similarity=0.206  Sum_probs=119.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|.++.+ ..+.++.. .....+.+++  +.+++||+||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5679999999999999999999998766 34444443 2234455565  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc----CCcEEEE
Q 029177           85 AFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI----GAAVYIE  158 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (197)
                      |||++++++++.. ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+.....    ...++++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~  158 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA  158 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence            9999999999998 5666666554  368999999999999653            2233333332211    1237999


Q ss_pred             ecccCCCCHHHHHHHHHHHHc
Q 029177          159 CSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +||++|+|++++|+++.+.+.
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          159 SSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EBGGGTBTHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999998874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=1.9e-30  Score=189.20  Aligned_cols=175  Identities=15%  Similarity=0.159  Sum_probs=116.8

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEecCCCcCccc-ccccCcCC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRG   78 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~   78 (197)
                      |....+.+||+++|++|||||||+++|.++.+...+.++......  +.+++. .+.+++||+||++.+.. .+..+++.
T Consensus         1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   78 (214)
T 2fh5_B            1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS   78 (214)
T ss_dssp             -------CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence            455667899999999999999999999999887777655433333  555543 57899999999999887 78888999


Q ss_pred             CcEEEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhhc---------------C-------
Q 029177           79 ADVFLLAFSLISKA-SYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYLI---------------N-------  132 (197)
Q Consensus        79 ~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~---------------~-------  132 (197)
                      +|++++|||+++.. ++......|...+...   .+++|+++|+||+|+........               .       
T Consensus        79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred             CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence            99999999999964 4555545666655442   24799999999999976431000               0       


Q ss_pred             --CCCCCCccHHHHHHHHHHcC--CcEEEEecccCC------CCHHHHHHHHHHH
Q 029177          133 --HPGATPITTAQGEELKKLIG--AAVYIECSSKTQ------QNVKTVFDAAIKV  177 (197)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~  177 (197)
                        ....+.+..+++..|+....  ..+++++||++|      +|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence              00000000111111111111  458999999999      9999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=8e-29  Score=177.84  Aligned_cols=162  Identities=33%  Similarity=0.579  Sum_probs=139.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..++|+++|++|||||||+++|.+..+...+.++.. +.....+.+++..+.+++||++|++++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            3568999999999999999999999988777777764 444667888998899999999999999988888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||.++..+++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++++.++...+. .++++||+
T Consensus       107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal  174 (191)
T 1oix_A          107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL  174 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999887 66777666543 5789999999999976443          667889999998886 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      ++.|++++|+.+.+.+
T Consensus       175 d~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          175 DSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=6e-29  Score=175.98  Aligned_cols=160  Identities=16%  Similarity=0.189  Sum_probs=119.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.++|+++|++|||||||+++|.++.+...+.++. .+.....+.+++  ..+.+||+||++.+...+...+..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            467899999999999999999999988876665554 333345566777  45679999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC--------CcE
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG--------AAV  155 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  155 (197)
                      +|||++++......  .++..+..  .++|+++|+||+|+...             ..++........+        ..+
T Consensus        84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  146 (178)
T 2lkc_A           84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEA-------------NPDRVMQELMEYNLVPEEWGGDTI  146 (178)
T ss_dssp             EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCS-------------CHHHHHHHHTTTTCCBTTTTSSEE
T ss_pred             EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcC-------------CHHHHHHHHHhcCcChhHcCCccc
Confidence            99999985433332  12233332  37899999999999752             1122222222222        148


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ++++||++|+|++++|+++.+.+...+.
T Consensus       147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          147 FCKLSAKTKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             EEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence            9999999999999999999988755433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-29  Score=190.11  Aligned_cols=162  Identities=20%  Similarity=0.271  Sum_probs=123.7

Q ss_pred             cceEEEEEECCC---------CCCHHHHHHHHhc---CCCCCCCCCce-e-eeeeEEE--------------EECCeEEE
Q 029177            5 ARFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-F-DNFSANV--------------VVDGSTVN   56 (197)
Q Consensus         5 ~~~~ki~vvG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~-~~~~~~~--------------~~~~~~~~   56 (197)
                      .+.+||+++|.+         |||||||+++|.+   +.+...+.+++ . +.....+              .+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            457999999999         9999999999999   66666676765 1 2221111              14567789


Q ss_pred             EEEEe-----------------------cCCCcCcccccccCcC---------------------CCcEEEEEEECCCh-
Q 029177           57 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFLLAFSLISK-   91 (197)
Q Consensus        57 ~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-   91 (197)
                      +++||                       ++|+++|...+..++.                     ++|++++|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888888888887                     79999999999999 


Q ss_pred             -hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHH
Q 029177           92 -ASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVK  168 (197)
Q Consensus        92 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  168 (197)
                       ++++.+ ..|+..+...  .+++|+++|+||+|+...+.          +  +++.+++......+++++||++++|++
T Consensus       177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv~  243 (255)
T 3c5h_A          177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNVD  243 (255)
T ss_dssp             --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSHH
T ss_pred             hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCHH
Confidence             999998 7888777654  25899999999999976543          3  567778876433489999999999999


Q ss_pred             HHHHHHHHHHc
Q 029177          169 TVFDAAIKVVL  179 (197)
Q Consensus       169 ~~~~~i~~~~~  179 (197)
                      ++|+++.+.+.
T Consensus       244 elf~~l~~~l~  254 (255)
T 3c5h_A          244 LAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=8.5e-29  Score=173.65  Aligned_cols=153  Identities=15%  Similarity=0.159  Sum_probs=113.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccc------cccCcC-
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSYR-   77 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~~-   77 (197)
                      +.++|+++|++|||||||+++|.+..+.....++. .+.....+.+++  ..+++|||||++.+...      ...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            35899999999999999999999876644444433 344444556666  57889999999887532      234443 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           78 -GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        78 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                       ++|++++|+|+++.++.    ..|+..+...  +.|+++|+||+|+.....          +.. ++.++++.++. ++
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~  141 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV  141 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence             79999999999986543    3455555543  799999999999975432          222 35678888886 89


Q ss_pred             EEecccCCCCHHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +++||++|+|++++|+++.+.+
T Consensus       142 ~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          142 VPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=1.2e-28  Score=189.00  Aligned_cols=167  Identities=20%  Similarity=0.261  Sum_probs=127.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-----ccccccCcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR   77 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~   77 (197)
                      ..+||+++|++|||||||+++|+++.  +.. .+.+|.... ...+.+++ .+.+++||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVE-HSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEE-EEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceE-EEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            35899999999999999999999873  322 233333322 22344444 478999999999988     778888899


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-
Q 029177           78 GADVFLLAFSLISKASYENISKKWI---PELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-  153 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (197)
                      ++|++++|||++++++++.+ ..|.   ..+....+++|+++|+||+|+.+...+.    ....+..+++.+++..++. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~----~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE----ELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH----HHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh----HHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999988 5554   4444456789999999999997632100    0000455778899999983 


Q ss_pred             -cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          154 -AVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       154 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                       .+++++||++ .++.++|..+++.+..
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence             6999999999 9999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=189.07  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=115.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+|+|++|||||||+++|.++.+...+ +|.... ...+...+  +.+++|||||++.+...+..+++.+|++++|
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            4689999999999999999999988764332 332211 22334444  7889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S  160 (197)
                      ||++++.++..+...|...+.... +++|+++|+||+|+.+..            ..++.......    ....+++++|
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~vS  307 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNWYIQATC  307 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCCEEEEEE
Confidence            999999999998555555554433 589999999999997632            12222211111    1124799999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~  181 (197)
                      |++|+|++++|++|.+.+.+.
T Consensus       308 Ak~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          308 ATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             TTTTBTHHHHHHHHHHHHTC-
T ss_pred             CCCCcCHHHHHHHHHHHHHhc
Confidence            999999999999999987643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=7e-28  Score=177.45  Aligned_cols=166  Identities=11%  Similarity=0.035  Sum_probs=117.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcc---------ccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL   74 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~   74 (197)
                      .+.+||+++|++|||||||+++|.++.+.... ..++...........+  ..+.+|||||+....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            45799999999999999999999998764222 2222333333334455  678899999984321         11123


Q ss_pred             CcCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHH---HHHHHHHH
Q 029177           75 SYRGADVFLLAFSLISKASYENI-SKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTA---QGEELKKL  150 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  150 (197)
                      ++..+|++++|||++++.++... ...|+..+....++.|+++|+||+|+.+...          +..+   ...+++..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  174 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN  174 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence            46788999999999999886522 1356666666556899999999999976443          4433   45667766


Q ss_pred             cC-CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      .+ ..+++++||++|+|++++|+++.+.+...+
T Consensus       175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            65 248999999999999999999999886543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=1.9e-29  Score=192.59  Aligned_cols=163  Identities=15%  Similarity=0.188  Sum_probs=118.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---ccccCcCCCcEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   82 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~   82 (197)
                      ||+++|++|||||||++++.++.++.   .+.+|....+..   ++ ..+.+++|||+||++|..   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999888664332   234554333321   23 348899999999999964   357889999999


Q ss_pred             EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH----cCCcEE
Q 029177           83 LLAFSLISK--ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL----IGAAVY  156 (197)
Q Consensus        83 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  156 (197)
                      ++|||++++  +.+... ..|+..+....+++|++++|||+|+.....+.   ...+.+..+++.++++.    ++. +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999998  333333 34455555556799999999999997642100   00012667777888886    454 89


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|||++ .++.++|..+++.++..
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhh
Confidence            9999998 69999999999877643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=1.5e-27  Score=166.10  Aligned_cols=150  Identities=22%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc-------ccccccCcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG   78 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~   78 (197)
                      .||+++|++|+|||||+++|.++.+.  ..+.+++.+.....+..++.  .+.+||+||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643  23333334455556666774  6789999999873       2334556889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|++++|+|++++.+...  ..+...+..  .+.|+++|+||+|+.+...              ++.+++ ..+..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence            999999999998755433  233333443  3789999999999976421              223344 566557999


Q ss_pred             ecccCCCCHHHHHHHHHHHH
Q 029177          159 CSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      +||++|+|++++|+++.+.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=1.8e-27  Score=169.96  Aligned_cols=159  Identities=15%  Similarity=0.158  Sum_probs=119.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY   76 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~   76 (197)
                      ..+.++|+++|++|||||||+++|.+..+.....+++ .+.....+..++  ..+.+|||||++.+..      .+..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            3467999999999999999999999865533333333 344455566666  6788999999988752      334444


Q ss_pred             C--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           77 R--GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        77 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .  .+|++++|+|.++.   +.. ..|...+..  .+.|+++|+||+|+.....          +. ..+.++++.++. 
T Consensus        82 ~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-  143 (188)
T 2wjg_A           82 INEKPDLVVNIVDATAL---ERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-  143 (188)
T ss_dssp             HHHCCSEEEEEEEGGGH---HHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred             hccCCCEEEEEecchhH---HHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence            3  58999999998864   344 456665554  3789999999999976442          22 345778888886 


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +++++||++++|++++|+++.+.+....
T Consensus       144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          144 KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            8999999999999999999999886554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=7.8e-28  Score=169.94  Aligned_cols=153  Identities=21%  Similarity=0.244  Sum_probs=112.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~   75 (197)
                      ..+||+++|++|||||||+++|.+..+  ...+.+++.+.+...+.+++.  .+.+|||||++.+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            357999999999999999999998754  233444555556667777874  57899999987643211        124


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++.+|++++|||++++.+++.  ..|...+.... .++|+++|+||+|+.+...                 .++...+ .
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------------~~~~~~~-~  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------------GMSEVNG-H  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------------EEEEETT-E
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------------hhhhccC-C
Confidence            789999999999999988764  45666665554 4799999999999954211                 0111223 4


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++++||++|+|++++|+++.+.+..
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999999987643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.9e-27  Score=170.74  Aligned_cols=158  Identities=15%  Similarity=0.162  Sum_probs=106.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCC----------CcCccccc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAG----------QEDYNRLR   72 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~   72 (197)
                      ....++|+++|++|||||||+++|.++.+...+.++..... ......++   .+.+||+||          ++.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34679999999999999999999999876554444432222 12223343   578999999          55555556


Q ss_pred             ccCcCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccH--HHHHH-
Q 029177           73 PLSYRGA---DVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITT--AQGEE-  146 (197)
Q Consensus        73 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~-  146 (197)
                      ..+++.+   |++++|+|++++.++...  .+...+..  .+.|+++|+||+|+.....          +..  +++.+ 
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~  162 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQT  162 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHH
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHH
Confidence            6666555   999999999998887764  23333433  3789999999999976542          221  22332 


Q ss_pred             HHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          147 LKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       147 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++.. ...+++++||++++|++++|+++.+.+.
T Consensus       163 ~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          163 LNID-PEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HTCC-TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             Hccc-CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            2222 2358999999999999999999998763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=1.4e-27  Score=195.77  Aligned_cols=165  Identities=22%  Similarity=0.299  Sum_probs=122.6

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEE-------EEE--CCeEEEEEEEecCCCcCccccccc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-------VVV--DGSTVNLGLWDTAGQEDYNRLRPL   74 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~g~~~~~~~~~~   74 (197)
                      ..+.+||+++|.+|||||||+++|.+..+...+.++....+...       +.+  ++..+.+.+||+||++.+...+..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            45679999999999999999999999988777777764433321       111  233578999999999999999999


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +++.+|++++|||+++.+   .. ..|+..+....++.|+++|+||+|+.+...          +..+++..++...+. 
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-  182 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN-  182 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT-
T ss_pred             HccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC-
Confidence            999999999999998763   34 678888888777899999999999976543          677888888888887 


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      +++++||++|+|++++++++.+.+.....
T Consensus       183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          183 RFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence            79999999999999999999998876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=5.3e-28  Score=172.80  Aligned_cols=157  Identities=17%  Similarity=0.204  Sum_probs=116.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCC-----------CcCcccccccCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY   76 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~   76 (197)
                      +||+++|++|||||||+++|.++.+...+.++.. .........    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999999999888766666542 112223333    577999999           455556666666


Q ss_pred             CC-CcEEEEEEECCChhhHHHHHHHHHHH--------H-hhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH
Q 029177           77 RG-ADVFLLAFSLISKASYENISKKWIPE--------L-RHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE  145 (197)
Q Consensus        77 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~--------~-~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      +. +++++++|++.+..++......|...        + ... ..+.|+++|+||+|+....             .+++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            66 77777777777778877764555432        1 111 1479999999999997632             45677


Q ss_pred             HHHHHcCCc------EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          146 ELKKLIGAA------VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       146 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++++.++..      +++++||++|+|++++|+++.+.+...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            888888862      4799999999999999999999886543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.4e-26  Score=173.46  Aligned_cols=155  Identities=16%  Similarity=0.170  Sum_probs=118.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc------ccCc-
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY-   76 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~-   76 (197)
                      .+.++|+++|++|||||||+++|.+..+.. .+.+++.+.....+...+  ..+.+||+||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            467899999999999999999999876533 233333444444555555  688899999998876543      3444 


Q ss_pred             -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           77 -RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        77 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                       ..+|++++|+|+++.++..    .|...+...  ++|+++|+||+|+...+.          +. .+...+++.++. +
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~  142 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P  142 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence             5899999999999976533    344444443  799999999999976543          22 236778888887 8


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHc
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++++||++|+|++++|+++.+.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          143 VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            999999999999999999999775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=3.1e-26  Score=175.68  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=125.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcCcc----------c
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----------R   70 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~----------~   70 (197)
                      +...-.|+++|.+|||||||+|+|++..+..  ....++..........+ +  ..+.||||||+..+.          .
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHH
Confidence            3456789999999999999999999987642  22233333333334444 4  678899999986654          3


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      ....+++.+|++++|+|++++.+..+. ..|+..+...  +.|+++|+||+|+..+..          ...+....+...
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~  151 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK  151 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence            445567899999999999999888887 6667777764  799999999999973332          456677778888


Q ss_pred             cC-CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++ ..+++++||++|+|++++|+++.+.+...
T Consensus       152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          152 HPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            74 55899999999999999999999988543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=9.9e-27  Score=166.73  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=111.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEE-EECCeEEEEEEEecCC----------CcCcccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAG----------QEDYNRLRP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~   73 (197)
                      ...+||+++|++|||||||+++|+++.+. .+.++......... ..+.   .+.+||+||          ++.+...+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            45689999999999999999999998642 23333322222222 2232   467999999          444555555


Q ss_pred             cCcCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           74 LSYRG---ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        74 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .+++.   +|++++|+|+++..+....  .+...+...  +.|+++|+||+|+.+...        .....+++.+++..
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence            55544   4999999999887554443  222333333  689999999999975432        11444666777777


Q ss_pred             cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          151 IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       151 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .+..+++++||++|+|++++|+++.+.+.
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            67668999999999999999999998774

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=3.6e-26  Score=172.17  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=112.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCcC-
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-   77 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~-   77 (197)
                      ..++|+++|++|||||||+++|.+... ...+.+++.+...  ..+.. ...+++||+||+..+..      ....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            357999999999999999999998653 3344333333222  23343 46788999999988763      3344443 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           78 -GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        78 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                       .+|++++|+|+++.++..    .|...+..  .+.|+++|+||+|+.....          +. .+...+++.++. ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence             699999999999875543    34444444  3799999999999976443          22 345678888887 89


Q ss_pred             EEecccCCCCHHHHHHHHHHHHc
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +++||++|+|++++|+++.+.+.
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=2.4e-25  Score=170.04  Aligned_cols=161  Identities=16%  Similarity=0.104  Sum_probs=113.8

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCC-CceeeeeeEEEEECCeEEEEEEEecCCCcCc--------cc
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NR   70 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~   70 (197)
                      |-...+..+|+++|.+|||||||+|+|++..+.. ... .++..........++  ..+.+|||||..+.        ..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence            3344566789999999999999999999987642 222 233332222233344  68889999998763        33


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      ....+++.+|++++|||++++.+...  ..+...+....++.|+++|+||+|+.....          .    ..+..+.
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~~  142 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYHE  142 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHHH
Confidence            44556889999999999998766544  344456666556799999999999965321          0    1222233


Q ss_pred             -cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          151 -IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       151 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                       .+..+++++||++|.|++++++.+.+.+.
T Consensus       143 ~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          143 LLPEAEPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             TSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             hcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence             35457999999999999999999998664

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=3.7e-25  Score=178.09  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   76 (197)
                      .++|+++|.+|||||||+|+|.+..  +...+.+++.+.....+.+++  +.+.+|||||++++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            5899999999999999999999874  344455566666677777888  678899999998766443        3467


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +.+|++++|+|++++.+++.. ..+...+.. ..+.|+++|+||+|+.....          .   ...++... +..++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~-~~~~~  374 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDEL-TEIRELKAA-HPAAKFLTVANKLDRAANAD----------A---LIRAIADG-TGTEV  374 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGH-HHHHHHHHH-CTTSEEEEEEECTTSCTTTH----------H---HHHHHHHH-HTSCE
T ss_pred             ccCCEEEEEEECCCCcchhhh-HHHHHHHHh-cCCCCEEEEEECcCCCCccc----------h---hHHHHHhc-CCCce
Confidence            899999999999999887432 222222222 23789999999999976432          2   12334443 22489


Q ss_pred             EEecccCCCCHHHHHHHHHHHHc
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +++||++|+|++++++++.+.+.
T Consensus       375 i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          375 IGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EECBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999886

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=4.8e-26  Score=170.24  Aligned_cols=149  Identities=13%  Similarity=0.207  Sum_probs=113.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc----------ccccCc-
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY-   76 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-   76 (197)
                      +|+++|.+|||||||+|+|.+..+.. .+.+++.+.....+..++.  .+.+||+||+..+..          ....++ 
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            89999999999999999999875533 3333445555666777774  778999999987764          334455 


Q ss_pred             -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           77 -RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        77 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                       ..+|++++|+|+++.++...+    ...+...  +.|+++|+||+|+.....          .. .....+++.++. +
T Consensus        81 ~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~  142 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC-S  142 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-C
T ss_pred             hCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-C
Confidence             889999999999997654443    3333333  789999999999976542          11 123557778886 8


Q ss_pred             EEEecccCCCCHHHHHHHHHHH
Q 029177          156 YIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++++||++|+|++++|+++.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          143 VIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EEECBGGGTBSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            9999999999999999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=3.3e-25  Score=167.20  Aligned_cols=157  Identities=17%  Similarity=0.101  Sum_probs=116.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEecCCCcCccc------ccccCc--
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--   76 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--   76 (197)
                      +.++|+++|++|||||||+++|.+..+.....+ .+.+.....+...+  ..+.+||+||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            358999999999999999999998766333333 33445555666677  4578999999988765      344444  


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .++|++++|+|+++.+.   . ..|...+... ...|+++|+||+|+.+...          ... ....+++.++. ++
T Consensus        80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence            68999999999998643   2 2333333332 2389999999999876543          222 25678888886 89


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++||++|.|++++|+.+.+.+...
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.1e-25  Score=164.79  Aligned_cols=165  Identities=10%  Similarity=-0.017  Sum_probs=108.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCC---CCCCCCceeeeeeEEEEEC-CeEEEEEEEecCCCcC----------ccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQED----------YNR   70 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----------~~~   70 (197)
                      ...++|+++|.+|||||||+++|+++.+   .....+++....  ..... .....+.+|||||...          +..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            4568999999999999999999999762   222323322211  22222 2336788999999533          233


Q ss_pred             ccccCcC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           71 LRPLSYR---GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        71 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ....++.   .+|++++|+|+++..+...  ..|+..+...  +.|+++|+||+|+......        ....+...+.
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~  172 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQKS  172 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHHH
Confidence            3333433   4889999999998655433  3556666653  7899999999999764320        0011222233


Q ss_pred             HHHc------CCcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          148 KKLI------GAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       148 ~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      ....      ...+++++||++|+|++++|++|.+.+.....
T Consensus       173 l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          173 LDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            3332      45689999999999999999999998865543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=4.3e-26  Score=172.25  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=114.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----------c
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------L   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----------~   74 (197)
                      +.++|+++|.+|+|||||+|+|.+..+.... .+++.+.....+...+  ..+.+|||||+..+.....          .
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4589999999999999999999987653333 3333455555566666  4667999999988763211          1


Q ss_pred             C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           75 S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        75 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +  .+.+|++++|+|+++.++....    ...+...  ++|+++|+||+|+.+...          .. .....+++.++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence            2  2689999999999986654443    3333333  799999999999976432          11 22466778888


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      . +++++||++|+|++++++++.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            6 899999999999999999998876544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=2.6e-25  Score=178.11  Aligned_cols=158  Identities=17%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----------cccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----------RLRP   73 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~   73 (197)
                      ..+||+++|.+|||||||+|+|++..+  ...+.+++.+.....+..++.  .+++|||||+.+..          ....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            568999999999999999999998765  344555656666667777874  57899999984332          2222


Q ss_pred             -cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHHc
Q 029177           74 -LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKLI  151 (197)
Q Consensus        74 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  151 (197)
                       .+++.+|++++|+|++++.++.+.  .|...+...  +.|+++|+||+|+.+...          ...++. .++.+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence             356789999999999999888875  566666543  799999999999976432          332222 2222222


Q ss_pred             ---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 ---GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                         +..+++++||++|+|++++|+.+.+.+.
T Consensus       318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          318 QFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence               3348999999999999999999988765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=4.2e-25  Score=177.82  Aligned_cols=159  Identities=20%  Similarity=0.213  Sum_probs=117.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCC----------CcCccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR   72 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~   72 (197)
                      ...+||+++|.+|+|||||+++|.+..  ....+.+++.+.....+..++.  .+++|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            356899999999999999999999754  2344555556666667777774  778999999          45555444


Q ss_pred             cc-CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           73 PL-SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        73 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .. +++.+|++++|+|+++..+...  ..|...+..  .+.|+++|+||+|+.+.+.          ...+++.+.++..
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            43 5788999999999998655444  455566655  3799999999999976443          5556666665554


Q ss_pred             ----CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 ----GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                          +..+++++||++|+|++++|+++.+.+.
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence                3458999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=2.8e-24  Score=172.20  Aligned_cols=152  Identities=23%  Similarity=0.222  Sum_probs=105.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCc---------ccccccCcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYR   77 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~   77 (197)
                      +|+++|.||||||||+|+|.+...  ...+.+++.+.....+.+++.  .+++|||||.+..         ...+..+++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            799999999999999999998763  344555556666677778884  5779999998753         233455689


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH-HHHHHHcCCcEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG-EELKKLIGAAVY  156 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  156 (197)
                      ++|++++|+|+++..+..+.  .+...++..  +.|+++|+||+|+...            . ..++ .++. .++..++
T Consensus        81 ~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~~  142 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGEP  142 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCSC
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCCE
Confidence            99999999999887655442  223333333  6899999999998542            1 1222 3343 4565468


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||++|.|++++++++.+.+..
T Consensus       143 ~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          143 IPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCHHHHHHHHHHhccc
Confidence            999999999999999999988763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.1e-25  Score=164.41  Aligned_cols=142  Identities=11%  Similarity=0.133  Sum_probs=101.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCC---
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   78 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---   78 (197)
                      .+.++|+++|++|||||||+++|.+..+..   .+.++....+        ....+.+||+||++.++..+..+++.   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            457899999999999999999999987644   2333332222        33578899999999998888877776   


Q ss_pred             -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCcccchhhhcCCCCCCCcc------HHHHH
Q 029177           79 -ADVFLLAFSLI-SKASYENISKKWIPELRHY-----APTVPIVLVGTKQDLREDKQYLINHPGATPIT------TAQGE  145 (197)
Q Consensus        79 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~  145 (197)
                       +|++++|||++ +++++... ..|+..+...     .+++|+++|+||+|+.....          +.      .+++.
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~~  150 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEIQ  150 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHHH
Confidence             89999999999 88888888 4555444332     25899999999999976432          22      45566


Q ss_pred             HHHHHcCCcEEEEecccCCCC
Q 029177          146 ELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus       146 ~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      .++...+. +++++||+++++
T Consensus       151 ~~~~~~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          151 KVIERRKK-SLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHH-HHHC--------
T ss_pred             HHHHHHhc-cccccccccccc
Confidence            77777665 788999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.8e-23  Score=162.33  Aligned_cols=159  Identities=18%  Similarity=0.137  Sum_probs=116.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc---------ccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL   74 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~   74 (197)
                      ...++|+++|.+|||||||+++|.+..... .+..++.......+...+  ..+.+|||||.......         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356899999999999999999999876422 222233222233333444  67889999998654211         112


Q ss_pred             CcCCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           75 SYRGADVFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ....+|++++|+|+++..  +++.. ..|+..+....++.|+++|+||+|+.....          +  +++.+++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~----------~--~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN----------I--KRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH----------H--HHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH----------H--HHHHHHHHhcC
Confidence            345689999999999887  66766 677777776555899999999999976432          2  44556666666


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      . +++++||++|+|++++++++.+.+.
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            5 8999999999999999999998774

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=3.1e-24  Score=172.88  Aligned_cols=151  Identities=21%  Similarity=0.245  Sum_probs=115.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCc-Ccccc--------cccC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS   75 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~   75 (197)
                      .++|+++|.+|||||||+|+|.+..  +...+..++.+.....+.+++  ..+.+|||||.+ .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999864  355566666777777788887  567899999998 65432        2235


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ++.+|++++|+|++++.+++.. . +++.+    .+.|+++|+||+|+.+.            +..++..++.. .+ .+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~-il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred             hhcccEEEEEecCCCCCCHHHH-H-HHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence            6789999999999999887664 3 33433    37899999999999642            23344444432 22 37


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHc
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++++||++|+|+++++++|.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999998754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=8.1e-25  Score=173.52  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc-------C
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-------S   75 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~   75 (197)
                      ...++|+++|++|+|||||+++|++..+.  ..+.+++.+.....+...+. ..+.+|||||+.++......       +
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            35789999999999999999999987652  33444445555566666654 37889999999988765333       6


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +..+|++++|+|++..+.   . ..|+..+...  ++|+++|+||+|+.....          .  +...++++.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~---~-~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY---E-DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH---H-HHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH---H-HHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence            788999999999833322   2 4566666665  799999999999976532          2  566677777786 8


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++++||++|+|++++|+++.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999988554

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=1.1e-22  Score=155.38  Aligned_cols=158  Identities=16%  Similarity=0.109  Sum_probs=111.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc---------Ccccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~   73 (197)
                      .+..+|+++|++|||||||+|+|++..+.  .....++.......+..++  ..+.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            34568999999999999999999987652  1222233222222233444  578899999987         3445566


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA  153 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ..++.+|++++|+|+++ -+...  ..+...+..  .+.|+++++||+|+.....          ...+...++...++.
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF  148 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence            78899999999999987 33222  223333432  3789999999999976221          233455666666776


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .+++++||++++|++++++.+.+.+.
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999999998664

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=2.8e-23  Score=166.66  Aligned_cols=153  Identities=23%  Similarity=0.303  Sum_probs=107.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY   76 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   76 (197)
                      .++|+++|++|||||||+|+|.+..  +.....+++.+.....+.+++  ..+.+|||||+.++...+        ...+
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            5899999999999999999999853  344455555566666777888  567899999987654432        2357


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ..+|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+.....          ..  ....+.   ...++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~~  360 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQI  360 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCCE
T ss_pred             hcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCcE
Confidence            88999999999999877666  35555554    369999999999976543          11  000111   23479


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +++||++|+|++++++++.+.+....
T Consensus       361 i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          361 VHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999886543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1.7e-22  Score=160.23  Aligned_cols=169  Identities=12%  Similarity=0.012  Sum_probs=114.0

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------EEE---------EE---CCeEEEEEEEecCC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------ANV---------VV---DGSTVNLGLWDTAG   64 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~~~D~~g   64 (197)
                      ....++|+++|++|+|||||+++|++................       ...         ..   ......+.+|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            345799999999999999999999875332210000000000       000         00   11236889999999


Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQG  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      |++|...+...+..+|++++|+|+++..+.... ..++..+... ...|+++|+||+|+.+....        ....++.
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--------~~~~~~i  154 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA--------LSQYRQI  154 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HHHHHHH
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHHH--------HHHHHHH
Confidence            999998888889999999999999998655544 4455555443 23589999999999764320        0111233


Q ss_pred             HHHHHHcC--CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          145 EELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       145 ~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      .++...++  ..+++++||++|+|++++++++.+.+..+.
T Consensus       155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            33333221  348999999999999999999998775443

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=1.3e-23  Score=162.76  Aligned_cols=159  Identities=19%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcC----cccccccCc---CCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLSY---RGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~---~~~~   80 (197)
                      +|+++|.+|||||||+++|+..... ..+..++.......+.+++. ..+.+||+||...    +..+...++   ..+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            6899999999999999999986532 23433443333334445442 4678999999532    333434444   4599


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-
Q 029177           81 VFLLAFSLIS---KASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-  153 (197)
Q Consensus        81 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (197)
                      ++++|+|+++   +++++.. ..|...+..+.   .+.|+++|+||+|+....              +...++++.+.. 
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~  303 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  303 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence            9999999999   7888888 77888887764   479999999999996421              345566666652 


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      .+++++||++++|+++++.+|.+.+...+.
T Consensus       304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          304 YPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            479999999999999999999998865543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=8e-23  Score=158.79  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=97.3

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPIVLVGTKQD  122 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  122 (197)
                      +.+++||++|++.++..|..++++++++|+|||+++          ..++.+. ..|+..+...  .+++|+++++||+|
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence            789999999999999999999999999999999999          4568888 5555555543  36899999999999


Q ss_pred             cccchhhh-----cCCCCCCCccHHHHHHHHHH----------cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          123 LREDKQYL-----INHPGATPITTAQGEELKKL----------IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       123 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +.+.....     ..+.....+..+++..++..          .....+++|||++++|++++|+++.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            96543100     01111123677888888873          234578999999999999999999998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=1.2e-22  Score=152.35  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEecCCCcCcccccc---------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------   73 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------   73 (197)
                      ..++|+|+|++|||||||+++|++.. +...+.++  +.......+..++  ..+.+|||||+.++.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            56899999999999999999999876 44444443  2333344455666  5678999999876543322         


Q ss_pred             --cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEee-CCCcccchhhhcCCCCCCCccH-------HH
Q 029177           74 --LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGT-KQDLREDKQYLINHPGATPITT-------AQ  143 (197)
Q Consensus        74 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~n-K~D~~~~~~~~~~~~~~~~~~~-------~~  143 (197)
                        ..++.+|++++|+|+++..........++..+.......|.++++| |+|+.+..           +..       ++
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~~  167 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNKA  167 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCHH
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchHH
Confidence              2568899999999998633222211222222211111356666666 99997431           111       33


Q ss_pred             HHHHHHHcCCcE--E--EEecccCCCCHHHHHHHHHHHHcC
Q 029177          144 GEELKKLIGAAV--Y--IECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       144 ~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      +..+....+...  +  +++||+++.|++++|.++.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            455666666421  2  789999999999999999987754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=3.1e-22  Score=160.36  Aligned_cols=158  Identities=20%  Similarity=0.174  Sum_probs=107.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------   72 (197)
                      ..+||+++|++|||||||+|+|.+...  ...+.+++.+.....+.+++.  .+.+|||||...+....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998754  344555555666667778885  56799999985443221           


Q ss_pred             -ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH-HHHHH
Q 029177           73 -PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE-ELKKL  150 (197)
Q Consensus        73 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  150 (197)
                       ...++.+|++++++|+++..+....  .+...+..  .+.|+++|+||+|+.+...          ...++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1235678999999999987766553  34444443  3789999999999976432          2233222 22222


Q ss_pred             c---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          151 I---GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       151 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +   +..+++++||++|.|++++|+.+.+.+.
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2   3348999999999999999999987653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.2e-22  Score=164.08  Aligned_cols=160  Identities=19%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCC-------CCCCCCC-ceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL   74 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~   74 (197)
                      ...+.++|+++|++++|||||+++|.+..       +..+..+ .+.+.....+.+++  ..+.+||+||+++|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            44568999999999999999999999865       2222222 12222223344566  67889999999999888888


Q ss_pred             CcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc
Q 029177           75 SYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI  151 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .+..+|++++|+|+++   +.+.+.+     ..+...  ++|+++++||+|+.+....        ....++..++....
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~~--~ip~IvviNK~Dl~~~~~~--------~~~~~~l~~~l~~~  157 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM-----LILDHF--NIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQST  157 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH-----HHHHHT--TCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHS
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH-----HHHHHc--CCCEEEEEECCCcccchhH--------HHHHHHHHHHHhhh
Confidence            8999999999999998   4444443     223332  6889999999999753210        02234555565554


Q ss_pred             ---CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 ---GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                         ...+++++||++|+|+++++++|.+.+.
T Consensus       158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          158 HNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence               1348999999999999999999999774

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=9.8e-22  Score=156.13  Aligned_cols=166  Identities=17%  Similarity=0.142  Sum_probs=105.9

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeee-eEEEEE-------------C--C----eEEEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNF-SANVVV-------------D--G----STVNL   57 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~-~~~~~~-------------~--~----~~~~~   57 (197)
                      +....++|+++|+.++|||||+++|.+.   .+..+..+  |....+ ...+..             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            4456799999999999999999999853   33333323  221111 111111             1  1    13789


Q ss_pred             EEEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCC
Q 029177           58 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINH  133 (197)
Q Consensus        58 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  133 (197)
                      .+||+|||++|...+...+..+|++++|+|+++.    .+.+.+ ..    +.. ....|+++++||+|+.+...     
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~----~~~-l~~~~iivv~NK~Dl~~~~~-----  152 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MA----LEI-LGIDKIIIVQNKIDLVDEKQ-----  152 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HH----HHH-TTCCCEEEEEECTTSSCTTT-----
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HH----HHH-cCCCeEEEEEEccCCCCHHH-----
Confidence            9999999999988777788899999999999954    444444 22    221 22358999999999976431     


Q ss_pred             CCCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          134 PGATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                         .....++..++...+  ...+++++||++|+|+++++++|.+.+..+.
T Consensus       153 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          153 ---AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             ---TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             ---HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence               012345566666653  2358999999999999999999998776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=3.8e-22  Score=164.02  Aligned_cols=164  Identities=15%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhc--CCCCCCC-----C---------CceeeeeeEEEEE---CCeEEEEEEEecC
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTS--NTFPTDY-----V---------PTVFDNFSANVVV---DGSTVNLGLWDTA   63 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~~-----~---------~~~~~~~~~~~~~---~~~~~~~~~~D~~   63 (197)
                      ...+..+|+++|+.++|||||+++|+.  +.+....     .         ..+.......+.+   ++..+.+++||||
T Consensus         2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP   81 (600)
T 2ywe_A            2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP   81 (600)
T ss_dssp             CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred             CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence            446678999999999999999999986  2221110     0         0000000112222   4556899999999


Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ  143 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      |+.+|...+...++.+|++++|+|+++..+.... ..|.....   .++|+++|+||+|+....            ..+.
T Consensus        82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v  145 (600)
T 2ywe_A           82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRV  145 (600)
T ss_dssp             CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHH
T ss_pred             CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHH
Confidence            9999988888889999999999999998887776 56655443   278999999999997532            2233


Q ss_pred             HHHHHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          144 GEELKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       144 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ..++.+.++..  +++++||++|.|++++++++.+.+..+.
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            45566655542  4899999999999999999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.88  E-value=1.6e-24  Score=175.95  Aligned_cols=161  Identities=17%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      +..+|+++|++++|||||+++|.+..+...+.+++. +.....+..++ ...++|||||||+.|..++...++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            457899999999999999999998655444444332 22222233321 1367899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HHHc-CCcEEEEec
Q 029177           85 AFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KKLI-GAAVYIECS  160 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~S  160 (197)
                      |+|+++....... ..| ..+..  .++|+++++||+|+.+...        ..+. .+...+   +..+ +..+++++|
T Consensus        82 VVDa~dg~~~qt~-e~l-~~~~~--~~vPiIVViNKiDl~~~~~--------~~v~-~~l~~~~~~~e~~~~~~~iv~vS  148 (537)
T 3izy_P           82 VVAADDGVMKQTV-ESI-QHAKD--AHVPIVLAINKCDKAEADP--------EKVK-KELLAYDVVCEDYGGDVQAVHVS  148 (537)
T ss_dssp             ECBSSSCCCHHHH-HHH-HHHHT--TTCCEEECCBSGGGTTTSC--------CSSS-SHHHHTTSCCCCSSSSEEECCCC
T ss_pred             EEECCCCccHHHH-HHH-HHHHH--cCCcEEEEEecccccccch--------HHHH-HHHHhhhhhHHhcCCCceEEEEE
Confidence            9999997766654 333 33333  3789999999999975321        0011 111111   1122 235899999


Q ss_pred             ccCCCCHHHHHHHHHHHHcC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~  180 (197)
                      |++|+|++++++++...+..
T Consensus       149 AktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          149 ALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             SSSSCSSHHHHHHHHHHHTT
T ss_pred             CCCCCCchhHHHHHHHhhhc
Confidence            99999999999999987643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=7.2e-23  Score=159.02  Aligned_cols=126  Identities=16%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRHY--APTVPIVLVGTK  120 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK  120 (197)
                      ..+.+++||++|++.++..|..++++++++|+|||++          +.++++.. ..|+..+...  .+++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          78899988 5565555443  368999999999


Q ss_pred             CCcccchhhh--------cCCCC---CCCccHHHHHHHHHH---------------cCCcEEEEecccCCCCHHHHHHHH
Q 029177          121 QDLREDKQYL--------INHPG---ATPITTAQGEELKKL---------------IGAAVYIECSSKTQQNVKTVFDAA  174 (197)
Q Consensus       121 ~D~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~i  174 (197)
                      +|+.+.....        ..+..   ......+++..++..               .....+++|||++++|++++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            9997543210        00000   011235677777443               123356899999999999999999


Q ss_pred             HHHHc
Q 029177          175 IKVVL  179 (197)
Q Consensus       175 ~~~~~  179 (197)
                      .+.+.
T Consensus       340 ~~~I~  344 (354)
T 2xtz_A          340 DETLR  344 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=1.8e-22  Score=166.08  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=112.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----CCCc------e-eeeee--EEEEE---CCeEEEEEEEecCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPT------V-FDNFS--ANVVV---DGSTVNLGLWDTAGQE   66 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----~~~~------~-~~~~~--~~~~~---~~~~~~~~~~D~~g~~   66 (197)
                      +..+|+++|+.++|||||+++|+..  .+...     ...+      . .+...  ..+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4679999999999999999999862  22110     0000      0 01111  12222   4556899999999999


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      +|...+...++.+|++++|+|+++..+.... ..|......   ++|+++|+||+|+....            ..+...+
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v~~e  146 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERVAEE  146 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHHHHH
Confidence            9998888889999999999999998777776 556554433   68999999999997532            2233455


Q ss_pred             HHHHcCCc--EEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          147 LKKLIGAA--VYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       147 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      +...++..  +++++||++|.|++++++++.+.+..+.
T Consensus       147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            66666642  4899999999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=5.8e-24  Score=170.26  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=100.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCc--------CcccccccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~   77 (197)
                      .+|+++|.+|||||||+|+|.+..+.  ....+++.+.....+...+  ..+++|||||++        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999986552  2333343344333333344  568899999986        34555666788


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|++++|+|++++.+..+.  .+...+..  .+.|+++|+||+|+.....     .         ..++. .++..+++
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~-----~---------~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA-----N---------IYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC----------C---------CCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh-----h---------HHHHH-HcCCCCeE
Confidence            99999999999988776553  34455554  3789999999999875321     0         01122 34544789


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++||++|.|+.++++++.+.+..
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcCc
Confidence            99999999999999999998864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.88  E-value=8.5e-22  Score=151.07  Aligned_cols=131  Identities=16%  Similarity=0.139  Sum_probs=98.8

Q ss_pred             EEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhh-hC-CCCCEE
Q 029177           48 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRH-YA-PTVPIV  115 (197)
Q Consensus        48 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~-~~~p~i  115 (197)
                      +...+  +.+++||++||+.++..|.+++++++++|+|||++          +.+++.+. ..|+..+.. .. +++|++
T Consensus       162 ~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~ii  238 (327)
T 3ohm_A          162 FDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVI  238 (327)
T ss_dssp             EEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEE
T ss_pred             EEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEE
Confidence            34444  78999999999999999999999999999999665          66778877 444444433 22 689999


Q ss_pred             EEeeCCCcccchhh------hcCCCCCCCccHHHHHHHHH----------HcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          116 LVGTKQDLREDKQY------LINHPGATPITTAQGEELKK----------LIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       116 iv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +++||+|+.+.+..      ...+........+++.++..          ..+ ..++++||++++|++++|..+.+.++
T Consensus       239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            99999999765421      11222223467788888743          334 47889999999999999999999887


Q ss_pred             CCC
Q 029177          180 QPP  182 (197)
Q Consensus       180 ~~~  182 (197)
                      +..
T Consensus       318 ~~~  320 (327)
T 3ohm_A          318 QLN  320 (327)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=6.9e-22  Score=146.37  Aligned_cols=167  Identities=17%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEecCCCcC-----------ccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQED-----------YNR   70 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~   70 (197)
                      ...+||+++|++|||||||+++|++..+.....+   ++.......+..++  ..+++|||||...           +..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4579999999999999999999999877554433   22333344556666  5678999999542           333


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENIS-KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK  149 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .....++.+|++++|+|+++....+... ..+...+... ...|+++|+||+|+......  . .... ...+.++.+.+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~--~-~~i~-~~~~~l~~l~~  179 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL--H-DYLR-EAPEDIQDLMD  179 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH--H-HHHH-hchHHHHHHHH
Confidence            3444567899999999997654422110 2222222221 24699999999998764320  0 0000 01246778888


Q ss_pred             HcCCcEEEEecccCC-----CCHHHHHHHHHHHHc
Q 029177          150 LIGAAVYIECSSKTQ-----QNVKTVFDAAIKVVL  179 (197)
Q Consensus       150 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~  179 (197)
                      ..+. .++.+++..+     .++.++|..+.+.+.
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            8887 6777776643     689999998887764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=1.7e-21  Score=158.58  Aligned_cols=115  Identities=16%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC--CC---------------CCCC------CCceeeeeeEEEEECCeEEEEEEEec
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN--TF---------------PTDY------VPTVFDNFSANVVVDGSTVNLGLWDT   62 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~--~~---------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~   62 (197)
                      +..+|+++|++|+|||||+++|+..  ..               ..++      ...+.......+...+  +.+++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            5679999999999999999999621  00               0000      0111111122334455  77889999


Q ss_pred             CCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        63 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      ||+.+|...+...++.+|++++|+|+++..+.... ..| ..+...  ++|+++|+||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999998777775 444 344433  7899999999999643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.87  E-value=4.6e-22  Score=157.90  Aligned_cols=165  Identities=19%  Similarity=0.168  Sum_probs=114.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC--------CCCCC----------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      ....++|+++|++++|||||+++|.+.        .+...          ....+.+  .....++.....+.+|||||+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~--~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN--TAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCS--CEEEEEECSSCEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEE--eeeeEeccCCeEEEEEECCCh
Confidence            446799999999999999999999873        11110          0011111  122233333367889999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHH
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQG  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      ++|.......+..+|++++|+|+++......  ..++..+...  ++| +++++||+|+.++...       .....++.
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~~~~~~~  154 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEV  154 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HHHHHHHH
Confidence            9998888888899999999999998765444  3444555443  688 8999999999742210       00123456


Q ss_pred             HHHHHHcCC----cEEEEecccCCCC------------------HHHHHHHHHHHHcCC
Q 029177          145 EELKKLIGA----AVYIECSSKTQQN------------------VKTVFDAAIKVVLQP  181 (197)
Q Consensus       145 ~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~  181 (197)
                      .++...++.    .+++++||++|+|                  +.++++.+...+..+
T Consensus       155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            677777763    5899999999987                  788888888876543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=2.7e-21  Score=154.78  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------------------------C-CCceeeeeeEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------------------------Y-VPTVFDNFSANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~-~~~~~~~~~~~~~~~~   52 (197)
                      ...++|+++|++++|||||+++|+..  .+...                             . ...+.+.....+..++
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45789999999999999999999643  11110                             0 1112222222333444


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCCccc
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE---NISKKWIPELRHYAPTVP-IVLVGTKQDLRE  125 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~  125 (197)
                        ..+.+||||||++|...+...++.+|++++|+|+++...   ++   .. ...+..+..  .++| +++++||+|+..
T Consensus        95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence              688899999999999888888999999999999998642   11   11 112222222  2567 999999999954


Q ss_pred             chhhhcCCCCCCCccHHHHHHHHHHcCC-----cEEEEecccCCCCHHHHHH
Q 029177          126 DKQYLINHPGATPITTAQGEELKKLIGA-----AVYIECSSKTQQNVKTVFD  172 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  172 (197)
                      ....    ........++...+...++.     .+++++||++|+|++++++
T Consensus       170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2100    00000223445556655553     4799999999999999654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=1.4e-22  Score=162.13  Aligned_cols=162  Identities=13%  Similarity=0.111  Sum_probs=104.6

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------------CCceeeeeeEEEE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV   49 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~   49 (197)
                      |+....++|+++|++++|||||+++|+..  .+....                              ...+.+.....+.
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            34556799999999999999999999864  332110                              1111111111222


Q ss_pred             ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-----CCC-CEEEEeeCCCc
Q 029177           50 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTV-PIVLVGTKQDL  123 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~-p~iiv~nK~D~  123 (197)
                      ..+  ..+.+|||||+++|...+...++.+|++++|+|+++ .+|+.. ..|..+..++.     .++ |+++++||+|+
T Consensus        81 ~~~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~-~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl  156 (435)
T 1jny_A           81 TKK--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAG-MSVEGQTREHIILAKTMGLDQLIVAVNKMDL  156 (435)
T ss_dssp             CSS--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHH-HSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccc-cccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence            333  678899999999999888889999999999999999 666643 22222211111     144 68999999999


Q ss_pred             ccchhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHHH
Q 029177          124 REDKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  171 (197)
                      .+...    .........+++.+++..++.    .+++++||++|+|+.+++
T Consensus       157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          157 TEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             SSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             CCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            76210    000000234567777777762    589999999999998554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4e-22  Score=142.68  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=84.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCC---
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   78 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---   78 (197)
                      .+.++|+++|++|||||||+++|.+..+...   +.++..        .+...+.+.+||+||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            4568999999999999999999999876431   122211        11133678899999999988877777765   


Q ss_pred             -CcEEEEEEECC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCcccc
Q 029177           79 -ADVFLLAFSLI-SKASYENISKKWIPELRHY-----APTVPIVLVGTKQDLRED  126 (197)
Q Consensus        79 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~  126 (197)
                       +|++++|||++ +++++... ..|+..+...     .++.|+++|+||+|+.+.
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence             89999999999 89999888 4554444322     258999999999999764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=3.7e-22  Score=150.72  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCC-CCCCC-------CCce-eeeeeEEEEECCeEEEEEEEecCCCcCccc---
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNT-FPTDY-------VPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR---   70 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~-~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---   70 (197)
                      ++...++|+++|.+|+|||||+|+|++.. +...+       .++. .+.....+..++..+.+++|||||..+...   
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            34457999999999999999999987744 33333       2333 233333333455557999999999743211   


Q ss_pred             ----cc-------c-------------cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           71 ----LR-------P-------------LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        71 ----~~-------~-------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                          ..       .             ..-..+|+++++++.+........ ..++..+..   ++|+++|+||+|+...
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~~~l~~l~~---~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE---KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH-HHHHHHHTT---TSCEEEEESSGGGSCH
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH-HHHHHHHhc---cCCEEEEEeccCCCCH
Confidence                11       1             111347899999987663222221 345555554   7899999999998653


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ...        ....+...+.....+. +++.+||.+++|+++++.++.+.+
T Consensus       160 ~e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          160 EEC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             HHH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            320        0111334455556676 799999999999999999998865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=2.8e-21  Score=159.20  Aligned_cols=168  Identities=16%  Similarity=0.127  Sum_probs=106.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEEC----------------CeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------------GSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~D~~g~~~   67 (197)
                      .+..+|+++|++++|||||+++|.+..+............ ...+..+                .....++|||||||++
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            3567999999999999999999987644322110110000 0011100                0112588999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC----CCCCCCcc
Q 029177           68 YNRLRPLSYRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN----HPGATPIT  140 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~----~~~~~~~~  140 (197)
                      |...+...++.+|++++|||+++   +.+++.+ .    .+..  .++|+++++||+|+.........    +.......
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999999   6666554 2    2233  37899999999999642110000    00000000


Q ss_pred             ------HH---HHHHHHHHc--------------CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          141 ------TA---QGEELKKLI--------------GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       141 ------~~---~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                            .+   +..+...+.              +..+++.+||++|+|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                  00   111111111              2348999999999999999999998764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.86  E-value=7.5e-21  Score=148.54  Aligned_cols=162  Identities=19%  Similarity=0.126  Sum_probs=109.3

Q ss_pred             EE-EEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEecCCCcC---------cccccccCc
Q 029177            8 IK-CVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY   76 (197)
Q Consensus         8 ~k-i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~   76 (197)
                      ++ |+++|.+|+|||||+|+|.+..+.. .+..++.+.....+.+++  ..+.+|||+|...         |...+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 9999999999999999999876532 333444555667778888  4678999999632         222222 46


Q ss_pred             CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-C
Q 029177           77 RGADVFLLAFSLISKA--SYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-G  152 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (197)
                      ..+|++++|+|++++.  ..... ..|...+.... .+.|+++|+||+|+.....         .-..+.+..++..+ .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            7899999999999886  44444 55656655543 5789999999999864210         00112333344554 2


Q ss_pred             -CcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          153 -AAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       153 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                       .++++++||++++|+++++++|.+.+....
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence             346899999999999999999998775433

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=6.7e-21  Score=151.44  Aligned_cols=165  Identities=17%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC---CCCCCCCC--ceeeeee-EEEEE-------------C--C----eEEEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN---TFPTDYVP--TVFDNFS-ANVVV-------------D--G----STVNLG   58 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~-~~~~~-------------~--~----~~~~~~   58 (197)
                      ....++|+++|+.++|||||+++|.+.   .+..+..+  |....+. ..+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            345789999999999999999999853   22222222  2211111 11111             1  1    136889


Q ss_pred             EEecCCCcCcccccccCcCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        59 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +||+|||++|.......+..+|++++|+|+++.    .+.+.+ ..+    ... ...|+++++||+|+.+....     
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~~-~~~~iivviNK~Dl~~~~~~-----  155 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL----QII-GQKNIIIAQNKIELVDKEKA-----  155 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH----HHH-TCCCEEEEEECGGGSCHHHH-----
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH----HHc-CCCcEEEEEECccCCCHHHH-----
Confidence            999999999887777778889999999999964    444443 222    221 23589999999999764320     


Q ss_pred             CCCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcCCC
Q 029177          135 GATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  182 (197)
                         ....++..++....  ...+++++||++|+|+++++++|.+.+..+.
T Consensus       156 ---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          156 ---LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             ---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             ---HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence               01223445555442  2358999999999999999999998776543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.86  E-value=1.1e-21  Score=155.21  Aligned_cols=163  Identities=18%  Similarity=0.152  Sum_probs=112.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-------CCCCC----------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-------TFPTD----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   68 (197)
                      ..+||+++|++++|||||+++|.+.       .+...          ....+..  .....++.....+.+|||||+++|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~--~~~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN--AAHVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE--CEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEE--eeeEEeccCCeEEEEEECCChHHH
Confidence            3589999999999999999999873       11100          0011111  111223333367889999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      .......++.+|++++|+|+++....... ..| ..+...  ++| +++++||+|+.++...       .....+++.++
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~-------~~~~~~~~~~~  148 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEM-------VELVELEIREL  148 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHH
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHH-------HHHHHHHHHHH
Confidence            88888889999999999999996554443 333 344433  688 7899999999742210       00123566777


Q ss_pred             HHHcCC----cEEEEecccCCCC----------HHHHHHHHHHHHcCC
Q 029177          148 KKLIGA----AVYIECSSKTQQN----------VKTVFDAAIKVVLQP  181 (197)
Q Consensus       148 ~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~  181 (197)
                      ...++.    .+++++||++|.|          +.++++.+.+.+..+
T Consensus       149 l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          149 LTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            777763    5899999999764          899999998877644

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=9e-22  Score=159.40  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=97.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CC-CCceeeeeeEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----------------------------DY-VPTVFDNFSANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~-----------------------------~~-~~~~~~~~~~~~~~~~   52 (197)
                      ...+||+++|++++|||||+++|+..  .+..                             +. ...+.+.....+  +.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence            34699999999999999999999764  1110                             00 011111112222  23


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----ISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                      ..+.+.||||||+++|...+...++.+|++++|+|+++..+...     .....+..+.. ....|+++|+||+|+.+.+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGTTC
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCcccch
Confidence            33678899999999999888889999999999999999754321     10122222222 2235799999999997632


Q ss_pred             hhhcCCCCCCCcc----HHHHHHHHHHcC----CcEEEEecccCCCCHHH
Q 029177          128 QYLINHPGATPIT----TAQGEELKKLIG----AAVYIECSSKTQQNVKT  169 (197)
Q Consensus       128 ~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  169 (197)
                      .          ..    .+++..+...++    ..+++++||++|+|+++
T Consensus       188 ~----------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 Q----------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             H----------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             H----------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            1          22    233344444444    25899999999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=1.4e-22  Score=163.17  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=100.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCC--------CcCcccccccC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLS   75 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~   75 (197)
                      ...+|+++|.+|||||||+|+|.+..+.  ....+++.+....  ........+++|||||        ++.+...+..+
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            3569999999999999999999986553  2223333333232  2333335788999999        55556666777


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcE
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAV  155 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ++++|++++|+|..+..+...  ..+...+..  .+.|+++|+||+|+.+...              ...++. ..+...
T Consensus       100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~  160 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE  160 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred             HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence            889999999999887554444  344455554  4899999999999864321              011111 223335


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHcC
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+++||++|.|+.++++++.+.+..
T Consensus       161 ~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          161 PYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             eEEeecccccchHHHHHHHHhhccc
Confidence            6799999999999999999987653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=2e-22  Score=157.49  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEecCCC-------cCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~   68 (197)
                      ..++|+|+|++|+|||||+++|++. .+...+.        ++.. ......+..++..+.+++|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999998764 3333322        2222 222222334566678999999998       556


Q ss_pred             ccccc-------cCcCC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           69 NRLRP-------LSYRG-----------ADVFLLAFSLIS-KASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        69 ~~~~~-------~~~~~-----------~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      ..++.       .+++.           +++.+++|++++ ..++......|+..+.   .++|+++|+||+|+..... 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e-  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE-  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence            55554       33322           222234454444 4445554234544443   4799999999999976543 


Q ss_pred             hcCCCCCCCccH--HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          130 LINHPGATPITT--AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       130 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                               +..  +++.+++..++. +++++||+++++ ++.|.++.+.+..
T Consensus       192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence                     333  566777777776 899999999998 8888777776644

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=8e-21  Score=146.19  Aligned_cols=127  Identities=16%  Similarity=0.137  Sum_probs=95.4

Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCC
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENISKKWIPELRHYA-PTVPIVLVGTKQD  122 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  122 (197)
                      .+.+++||++|++.++..|..++++++++|+|||++          +.+++.+....|...+.... +++|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            378999999999999999999999999999999999          77888888444444444333 6899999999999


Q ss_pred             cccchhhh-----cCCCCCCCccHHHHHHHHHH-c-------------------------CCcEEEEecccCCCCHHHHH
Q 029177          123 LREDKQYL-----INHPGATPITTAQGEELKKL-I-------------------------GAAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       123 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~  171 (197)
                      +.+.....     ..+........+++.++... .                         ....++++||++..+++.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            97643211     01111112356666555432 2                         23467899999999999999


Q ss_pred             HHHHHHHcC
Q 029177          172 DAAIKVVLQ  180 (197)
Q Consensus       172 ~~i~~~~~~  180 (197)
                      ..+.+.+++
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=1.2e-20  Score=150.89  Aligned_cols=156  Identities=16%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCC--CCCC----------CCCceeeee--------------------eEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~   52 (197)
                      ...++|+++|++++|||||+++|++..  +...          ..+++...+                    .....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            346899999999999999999998643  1111          111110000                    00111222


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCCcccchhhhc
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV-PIVLVGTKQDLREDKQYLI  131 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~  131 (197)
                      ....+.+|||||+++|...+...+..+|++++|+|+++.......  .++..+...  +. |+++|+||+|+.+....  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~--  175 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER--  175 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH--
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH--
Confidence            236788999999999988888889999999999999987544432  333333332  44 59999999999752110  


Q ss_pred             CCCCCCCccHHHHHHHHHHcC----CcEEEEecccCCCCHHHH
Q 029177          132 NHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKTV  170 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~  170 (197)
                          ......++..++++.++    ..+++++||++|+|++++
T Consensus       176 ----~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          176 ----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ----HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                00012355666777776    258999999999999874

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.85  E-value=5.2e-21  Score=153.87  Aligned_cols=158  Identities=13%  Similarity=0.036  Sum_probs=104.7

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC------------------------------CCCceeeeeeEEE
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV   48 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~   48 (197)
                      |......++|+++|++++|||||+++|++.  .+...                              ....+.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            445567899999999999999999999863  22110                              0111111111223


Q ss_pred             EECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---H----HHHHHHHHHHHhhhCCCCC-EEEEeeC
Q 029177           49 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y----ENISKKWIPELRHYAPTVP-IVLVGTK  120 (197)
Q Consensus        49 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~p-~iiv~nK  120 (197)
                      ..++  ..+.+||||||++|.......+..+|++++|+|+++...   |    ... . .+..+..  .++| +++++||
T Consensus        81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~-~~~~~~~--~~v~~iivviNK  154 (458)
T 1f60_A           81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-E-HALLAFT--LGVRQLIVAVNK  154 (458)
T ss_dssp             ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-H-HHHHHHH--TTCCEEEEEEEC
T ss_pred             ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-H-HHHHHHH--cCCCeEEEEEEc
Confidence            3334  678899999999999888888999999999999998632   2    222 2 2222332  2566 8999999


Q ss_pred             CCcccchhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177          121 QDLREDKQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV  170 (197)
Q Consensus       121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  170 (197)
                      +|+.+....      ......++..++...++.    .+++++||++|+|+.++
T Consensus       155 ~Dl~~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999731100      000233456667777763    58999999999998743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=5e-23  Score=165.96  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+..+|+++|++++|||||+++|.+..+.....+.+ .+.....+..++  ..++|||||||+.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            356789999999999999999998755443332222 111122223344  46789999999999999999999999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC-CcEEEEe
Q 029177           84 LAFSLISK---ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG-AAVYIEC  159 (197)
Q Consensus        84 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (197)
                      +|+|+++.   .+.+.+     ..+..  .++|+++++||+|+.+............ .     ..++..++ ..+++++
T Consensus        80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~-~-----~~~~~~~~~~~~~v~v  146 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQ-Y-----GILPEEWGGESQFVHV  146 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCC-C-----CCCTTCCSSSCEEEEC
T ss_pred             EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHH-h-----hhhHHHhCCCccEEEE
Confidence            99999884   444333     22222  3789999999999975321101000000 0     00111222 3589999


Q ss_pred             cccCCCCHHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~  177 (197)
                      ||++|+|++++|+++...
T Consensus       147 SAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          147 SAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CTTTCTTCTTHHHHTTTT
T ss_pred             eeeeccCcchhhhhhhhh
Confidence            999999999999998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=5.3e-21  Score=149.74  Aligned_cols=147  Identities=13%  Similarity=0.047  Sum_probs=103.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      +|+++|++++|||||+++|...       ..+.+.....+..++  ..+.+|||||+++|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999811       111111112222333  568899999999998777777899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCCcccchhhhcCCCCCCCcc--HHHHHHHHHHcC--CcEEEE--ec
Q 029177           89 ISKASYENISKKWIPELRHYAPTVPI-VLVGT-KQDLREDKQYLINHPGATPIT--TAQGEELKKLIG--AAVYIE--CS  160 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~S  160 (197)
                      ++... ... ..++..+...  ++|. ++++| |+|+ +...          +.  .++..++...++  ..++++  +|
T Consensus        93 ~~g~~-~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           93 PQGLD-AHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             TTCCC-HHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CCCCc-HHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            54332 222 3444444443  6787 88999 9999 5322          22  245555655543  358999  99


Q ss_pred             ccC---CCCHHHHHHHHHHHHcC
Q 029177          161 SKT---QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~---~~~i~~~~~~i~~~~~~  180 (197)
                      |++   ++|++++++.|.+.+..
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhccc
Confidence            999   99999999999887643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.4e-20  Score=155.82  Aligned_cols=157  Identities=13%  Similarity=0.105  Sum_probs=101.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------------------------CCceeeeeeEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~   52 (197)
                      ...+||+++|++|+|||||+++|++.......                                ...+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            34789999999999999999999865221110                                1122222223333444


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y--ENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                        +.+.||||||+++|...+...++.+|++++|+|+++...   +  .......+..+... ...|+++|+||+|+.+..
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTC
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchh
Confidence              678899999999999988899999999999999987421   0  00101112222221 224599999999997622


Q ss_pred             hhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHHH
Q 029177          128 QYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKTV  170 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  170 (197)
                      ..      ......+++..+....+.    .+++++||++|+|+.++
T Consensus       322 ~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            10      000112344455555553    58999999999999875

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.83  E-value=1.2e-20  Score=162.62  Aligned_cols=166  Identities=16%  Similarity=0.129  Sum_probs=112.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC-------CCCC--CCC-----Cce-eeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN-------TFPT--DYV-----PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~-------~~~~--~~~-----~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ...++|+++|++++|||||+++|.+.       .+..  ...     .+. .+.....+.++.....+.+|||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            45799999999999999999999863       1100  000     000 01111112233334678899999999998


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEELK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ......++.+|++|+|+|+++.......  .++..+...  ++| +++++||+|+.++...       .....+++.++.
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~-------le~i~eEi~elL  442 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEEL-------LELVEMEVRELL  442 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhh-------HHHHHHHHHHHH
Confidence            8888889999999999999987544432  333444443  688 7899999999753210       001235667777


Q ss_pred             HHcCC----cEEEEecccCC--------CCHHHHHHHHHHHHcCC
Q 029177          149 KLIGA----AVYIECSSKTQ--------QNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       149 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~  181 (197)
                      ..++.    .+++++||++|        +|+.++++.+...+..+
T Consensus       443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            77763    58999999999        46899999998876543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=3.5e-21  Score=155.23  Aligned_cols=159  Identities=18%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------------C------CCCceeeeeeEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~------------------------~------~~~~~~~~~~~~~~~~~   52 (197)
                      ...++|+++|++++|||||+++|+.  +.+..                        +      ....+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4578999999999999999999975  22210                        0      00111111111233344


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCCcccc
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYENI--SKKWIPELRHYAPTVP-IVLVGTKQDLRED  126 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  126 (197)
                        ..+.+||||||++|...+...++.+|++++|+|+++..   +|+..  ....+..+..  .++| +++++||+|+...
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCc
Confidence              67889999999999998888899999999999999863   22211  0111122222  2677 9999999999541


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHc-C-----CcEEEEecccCCCCHHHHH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLI-G-----AAVYIECSSKTQQNVKTVF  171 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~  171 (197)
                      ..    +........++..++...+ +     ..+++++||++|+|+.+++
T Consensus       197 ~~----~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          197 QW----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SS----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cc----cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            10    0000002234566666665 3     3479999999999998755

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=5.5e-20  Score=133.28  Aligned_cols=164  Identities=13%  Similarity=-0.003  Sum_probs=100.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCc----------ccccc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY----------NRLRP   73 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~   73 (197)
                      ....+|+++|++|||||||++++.+..+.....++.... ....+.+++   .+.+||+||....          .....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            345799999999999999999999876433333333222 122223333   4679999997431          11112


Q ss_pred             cCc---CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           74 LSY---RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        74 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .++   ..++++++++|++++.+....  .+...+..  .+.|+++++||+|+.....        +....+.+..++..
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~~  168 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA  168 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchh--------HHHHHHHHHHHHHh
Confidence            222   578999999999987665432  22222222  3689999999999865321        00123455666665


Q ss_pred             cC-CcEEEEecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          151 IG-AAVYIECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       151 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      .+ ..+.+++||+++.|++++++.+.+.+.....
T Consensus       169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             cCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            54 3477899999999999999999988755433

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=5.8e-21  Score=145.67  Aligned_cols=159  Identities=19%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------CCCcee--------------------eee---------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVF--------------------DNF---------------   44 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~------~~~~~~--------------------~~~---------------   44 (197)
                      ...+|+|+|.+|||||||+|+|++..+.+.      ..|+..                    ...               
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999876422      112200                    000               


Q ss_pred             ---------eEEEEEC-CeEEEEEEEecCCCcC-------------cccccccCcCCCcEEE-EEEECCChhhHHHHHHH
Q 029177           45 ---------SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFL-LAFSLISKASYENISKK  100 (197)
Q Consensus        45 ---------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~  100 (197)
                               ...+.+. .....+.+|||||...             +......+++.++.++ +|+|+++..+.... ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                     0000000 0025788999999643             2334445677787666 79999876554443 23


Q ss_pred             HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH--HHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL--KKLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +...+..  .+.|+++|+||+|+.+...          ...+.....  ....+..+++++||++++|++++++++.+.
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            4455443  3789999999999975432          111111110  001133478899999999999999998874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=8.4e-20  Score=136.96  Aligned_cols=118  Identities=16%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcC-----
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-----   77 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-----   77 (197)
                      .+.++|+++|++|+|||||+++|++...  ...+.+++.......+..++  ..+++|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3579999999999999999999999764  33444444444455556666  57889999999887655444432     


Q ss_pred             ----CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCCccc
Q 029177           78 ----GADVFLLAFSLISKASYENISKKWIPELRHYA-P--TVPIVLVGTKQDLRE  125 (197)
Q Consensus        78 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~  125 (197)
                          ++|++++|+|++... +......|+..+.... .  ..|+++|+||+|+..
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                789999999987754 3333245666666543 2  249999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.81  E-value=2.8e-19  Score=145.75  Aligned_cols=116  Identities=16%  Similarity=0.114  Sum_probs=80.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC--------CCCcee-----------ee--eeEEEEECCeEEEEEEEe
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTVF-----------DN--FSANVVVDGSTVNLGLWD   61 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~--------~~~~~~-----------~~--~~~~~~~~~~~~~~~~~D   61 (197)
                      .+..+|+++|++|+|||||+++|+..  .+...        ...+..           +.  ....+...+  +.+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            35789999999999999999999863  11000        000000           00  111233344  6788999


Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |||+.+|.......++.+|++++|+|+++......  ..+...+..  .++|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            99999999888888999999999999998754333  233333333  37999999999998754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=8.5e-21  Score=156.63  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------------------------CC-CceeeeeeEEEEECC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------------------------YV-PTVFDNFSANVVVDG   52 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~~-~~~~~~~~~~~~~~~   52 (197)
                      ...++|+++|++++|||||+++|+..  .+...                             .. .++.+.....+..  
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence            35789999999999999999999641  11000                             00 1111111112222  


Q ss_pred             eEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhCCCCC-EEEEeeCC
Q 029177           53 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENISKKWIPELRHYAPTVP-IVLVGTKQ  121 (197)
Q Consensus        53 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~  121 (197)
                      ....+.|||||||++|.......+..+|++|+|+|+++.          .+.+.+     ..+...  ++| +++|+||+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKi  325 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKL  325 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECG
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEecc
Confidence            236788999999999999888899999999999999864          222222     222222  565 99999999


Q ss_pred             CcccchhhhcCCCCCCCccHHHHHHHH-HHcCC----cEEEEecccCCCCHH--------------HHHHHHHHHH
Q 029177          122 DLREDKQYLINHPGATPITTAQGEELK-KLIGA----AVYIECSSKTQQNVK--------------TVFDAAIKVV  178 (197)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~i~~~~  178 (197)
                      |+.+....      .......+...+. ...+.    .+++++||++|+|+.              .+++.|....
T Consensus       326 Dl~~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          326 DLMSWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             GGGTTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccccccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            99752110      0001123344444 44454    379999999999998              6777776544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=2.7e-19  Score=149.61  Aligned_cols=116  Identities=18%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----------------eeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-----------------VFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      .+..+|+++|+.|+|||||+++|.+........++                 ..+.......+....+.+++|||||+.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45678999999999999999999853221110000                 0111122222222347888999999999


Q ss_pred             cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           68 YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      |...+..+++.+|++++|+|+++.......  .++..+...  ++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            988888889999999999999887655443  344444443  79999999999986

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.80  E-value=1.2e-18  Score=146.17  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=83.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----C------------CCCceeeeeeEEEEECCeEEEEEEEecCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----D------------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   65 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   65 (197)
                      .+..+|+++|++|+|||||+++|+.  +.+..     .            ....+.......+...+  +.+++|||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence            5688999999999999999999984  21100     0            00111111122333444  67889999999


Q ss_pred             cCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           66 EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      .+|...+...++.+|++++|+|+++..+.... ..|.. +...  ++|+++|+||+|+...
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence            99998888899999999999999998887776 55544 3333  7999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=4.9e-20  Score=140.79  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=109.6

Q ss_pred             HHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHH
Q 029177           22 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISK   99 (197)
Q Consensus        22 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   99 (197)
                      +|+.++..+.|. ..+.||..+.+...+..++   .+++||+  +++|+.+++.+++++|++++|||++++. ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            688888888898 7888888766654432222   6789999  8999999999999999999999999997 67777 8


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCC-cEEEEecccCCCCHHHHHHHHHH
Q 029177          100 KWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGA-AVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       100 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      .|+..+..  .++|+++|+||+|+.+...          +  +++.+++..++. .+++++||++|+|++++|..+..
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            88887765  3899999999999976432          2  456677777762 38999999999999999988754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=5.3e-19  Score=148.47  Aligned_cols=170  Identities=12%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcee----eee----eEEEEE-CCe----------------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF----DNF----SANVVV-DGS----------------------   53 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~----~~~----~~~~~~-~~~----------------------   53 (197)
                      ..++|+|+|.+|+|||||+|+|++..+. ....+++.    ..+    ..++.+ ++.                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999987642 23333331    000    001111 000                      


Q ss_pred             -----------------------E--EEEEEEecCCCcC---cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029177           54 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPEL  105 (197)
Q Consensus        54 -----------------------~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  105 (197)
                                             .  ..+.+|||||...   .......+++.+|++++|+|++++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                   0  2478999999654   233445667899999999999998887776 5555555


Q ss_pred             hhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc--cHHHHHH-----HHHHcC-------CcEEEEeccc---------
Q 029177          106 RHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI--TTAQGEE-----LKKLIG-------AAVYIECSSK---------  162 (197)
Q Consensus       106 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~---------  162 (197)
                      ...  +.|+++|+||+|+......  ........  ..+....     +....+       ..+++++||+         
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            433  6789999999999754310  00000000  0001111     111111       2368999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHcC
Q 029177          163 -----TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 -----~~~~i~~~~~~i~~~~~~  180 (197)
                           ++.|+++++..+.+.+..
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHHH
Confidence                 999999999999887653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=1.4e-18  Score=130.84  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc---------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---------   74 (197)
                      ..++|+++|.+|+|||||+|+|++..+.  ....+++.......+...+  ..+.+|||||+.++......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            4799999999999999999999987652  2233333333333334444  67889999999776533221         


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCCcccch
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-T--VPIVLVGTKQDLREDK  127 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~D~~~~~  127 (197)
                      ....+|++++|+|++.. ++......|+..+..... +  .|+++|+||+|+....
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            23479999999998764 343332456666655432 2  6999999999997543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=7.5e-20  Score=139.68  Aligned_cols=162  Identities=14%  Similarity=0.131  Sum_probs=86.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC-CCCCCCC--------Ccee-eeeeEEEEECCeEEEEEEEecCCC-------cCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDYV--------PTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~   68 (197)
                      -.++|+++|++|+|||||++++++. .++..+.        ++.. ..........+....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998874 4443321        1111 111111222344578899999998       444


Q ss_pred             ccccc-------cCcC-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177           69 NRLRP-------LSYR-------------GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ  128 (197)
Q Consensus        69 ~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  128 (197)
                      .....       .+++             .+++++++.+.+. .+++....   ..+....++.|+++|+||.|+.....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44332       2221             2344555555432 23434312   23333334689999999999976432


Q ss_pred             hhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      .        ....+++.++++.++. +++++||+++ |++++|.++.+.+...
T Consensus       173 ~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 R--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             H--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred             H--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence            0        1234677888999986 8999999999 9999999999988654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.78  E-value=4.6e-18  Score=142.76  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=84.7

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEecCC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAG   64 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g   64 (197)
                      ..+..+|+++|++|+|||||+++|+.  +.+..           ++      ...+.......+..++  +.+.+|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            35678999999999999999999985  32210           00      0111111122334444  6788999999


Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +.+|...+...++.+|++++|+|+++..+.... ..|.. +...  ++|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHHc--CCCEEEEEECCCcccc
Confidence            999988888889999999999999998777765 44543 4433  7899999999998754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.78  E-value=8.6e-18  Score=141.27  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=83.6

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C------CCceeeeeeEEEEEC-----CeEEEEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------Y------VPTVFDNFSANVVVD-----GSTVNLGL   59 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~-----------~------~~~~~~~~~~~~~~~-----~~~~~~~~   59 (197)
                      ..+..+|+++|+.|+|||||+++|+..  .+...           +      ...+.......+.+.     +..+.+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            356789999999999999999999752  22110           0      000111111122222     23478999


Q ss_pred             EecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           60 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        60 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |||||+.+|...+...++.+|++++|+|+++..+.... ..|.. +..  .++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCcccc
Confidence            99999999998888899999999999999988766554 44433 332  27999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.77  E-value=4.3e-18  Score=132.69  Aligned_cols=130  Identities=15%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             EEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCE
Q 029177           47 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPI  114 (197)
Q Consensus        47 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~  114 (197)
                      .+.+++  +.+++||++|++.++..|..++++++++|+|||+++          ..++... ..|+..+...  ..++|+
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCE
Confidence            344554  789999999999999999999999999999999999          6788888 4455544432  368999


Q ss_pred             EEEeeCCCcccchhhh------cCCCCCCCccHHHHHHHHH-----------HcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          115 VLVGTKQDLREDKQYL------INHPGATPITTAQGEELKK-----------LIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       115 iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++++||+|+.+.....      ..+.....+..+++..++.           ..+ ..+++|||++++|++++|+++.+.
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~  350 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDT  350 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHH
Confidence            9999999997543100      0111111256777777762           223 478999999999999999999988


Q ss_pred             HcC
Q 029177          178 VLQ  180 (197)
Q Consensus       178 ~~~  180 (197)
                      +.+
T Consensus       351 i~~  353 (362)
T 1zcb_A          351 ILH  353 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=4.2e-18  Score=134.74  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=106.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc----ccccc---CcCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPL---SYRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~~   80 (197)
                      .|+++|++|||||||++++.+... ...+..++.......+..++ ...+.+||+||.....    .+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            479999999999999999988632 12233333222223344443 2467899999975321    12111   235799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA---PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .+++++|++ ...+..+ ..+...+....   .+.|.++++||+|+... .           ..+...+.....+. +++
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi  302 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL  302 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence            999999998 5556665 45555544433   35799999999999653 1           12333444444554 799


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCCCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      .+||++++|++++++++.+.+...+.
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEECCCccCHHHHHHHHHHHHHhccc
Confidence            99999999999999999998876554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=2.7e-18  Score=135.96  Aligned_cols=158  Identities=14%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCC-C-------CCcee-eeeeEEEEECCeEEEEEEEecCCCcCccc-------
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-Y-------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR-------   70 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~-~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------   70 (197)
                      .++|+|+|++|+|||||+++|++..+... +       .++.. ......+...+....+++||++|...+..       
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            57899999999999999999998765322 1       11111 11111111233335789999999765311       


Q ss_pred             ------------------ccccCcCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhc
Q 029177           71 ------------------LRPLSYRGADVFLLAFSLISK-ASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLI  131 (197)
Q Consensus        71 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  131 (197)
                                        +...++.++++.+++|+...- .++......|+..+.   .++|+|+|+||+|+.....   
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e---  184 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE---  184 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence                              123345666665666655543 344444235666665   3789999999999976543   


Q ss_pred             CCCCCCCccH--HHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          132 NHPGATPITT--AQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       132 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                             +..  +.+.+++..++. +++++|+++++++.++|..+...+
T Consensus       185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence                   433  667788888886 899999999999999988887754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=3.4e-19  Score=136.91  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=68.0

Q ss_pred             EEEEEEecCCCcC-------------cccccccCcCCCcEEEEEEECCChhhH-HHHHHHHHHHHhhhCCCCCEEEEeeC
Q 029177           55 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKASY-ENISKKWIPELRHYAPTVPIVLVGTK  120 (197)
Q Consensus        55 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK  120 (197)
                      ..+.+|||||...             +......++..+|++++|+|.++.... ... ..+...+..  .+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence            4688999999754             233445567899999999998543211 111 123344433  37899999999


Q ss_pred             CCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE---ecccC---CCCHHHHHHHHHHHHcCC
Q 029177          121 QDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE---CSSKT---QQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       121 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~i~~~~~~i~~~~~~~  181 (197)
                      +|+.....          ...+.........+ .++++   +|+.+   +.|+.+++..+...+...
T Consensus       208 ~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99975321          11111111001111 24454   55555   799999999998877543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.75  E-value=1.8e-17  Score=130.21  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=97.1

Q ss_pred             EEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCE
Q 029177           47 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENISKKWIPELRHY--APTVPI  114 (197)
Q Consensus        47 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~  114 (197)
                      .+.+++  +.+++||++|++.++..|..++++++++|+|||+++          .++++.. ..|+..+...  .+++|+
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeE
Confidence            344555  889999999999999999999999999999999999          8899998 6676666554  368999


Q ss_pred             EEEeeCCCcccchhhhcC--------CCC------------CCCccHHHHHHHH-----HHc-------CCcEEEEeccc
Q 029177          115 VLVGTKQDLREDKQYLIN--------HPG------------ATPITTAQGEELK-----KLI-------GAAVYIECSSK  162 (197)
Q Consensus       115 iiv~nK~D~~~~~~~~~~--------~~~------------~~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~  162 (197)
                      +||+||+|+.+.......        +..            ......+++..++     +..       ....+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            999999999654321000        000            0001245666663     221       23467899999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +++||+++|.++.+.+..
T Consensus       368 d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHH
Confidence            999999999999887753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.74  E-value=4.9e-19  Score=138.51  Aligned_cols=152  Identities=18%  Similarity=0.129  Sum_probs=97.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeE----------------------------------------
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSA----------------------------------------   46 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~----------------------------------------   46 (197)
                      -+|+|+|++|||||||+++|.+..+.+....+.. .....                                        
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            3899999999999999999999776333222110 00000                                        


Q ss_pred             ------------EEEE-CCeEEEEEEEecCCCcCc-------------ccccccCcCCCcEEEEEEECCChhhHHHHHHH
Q 029177           47 ------------NVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFLLAFSLISKASYENISKK  100 (197)
Q Consensus        47 ------------~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  100 (197)
                                  .+.+ ......+++|||||...+             ......++.++|++++++|.++.+....   .
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~---~  191 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS---D  191 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC---H
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH---H
Confidence                        0000 001135789999998776             3345566789999999998866543322   2


Q ss_pred             HHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHH
Q 029177          101 WIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA  173 (197)
Q Consensus       101 ~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  173 (197)
                      |+..+.... .+.|+++|+||+|+.....          ...+.+..+...++. +++.+|+..+.++++.+..
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence            333333332 3689999999999976432          333334444445554 7899999998888766544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.7e-17  Score=130.85  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=47.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEE---------------------EECC-eEEEEEEEecCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANV---------------------VVDG-STVNLGLWDTAG   64 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~D~~g   64 (197)
                      ++|+++|.+|||||||+|+|.+.... ..+..++........                     .+++ ..+.++||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632 233333322211111                     1233 247899999999


Q ss_pred             CcCc----ccccc---cCcCCCcEEEEEEECCCh
Q 029177           65 QEDY----NRLRP---LSYRGADVFLLAFSLISK   91 (197)
Q Consensus        65 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   91 (197)
                      ....    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22222   457899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=2.9e-17  Score=119.91  Aligned_cols=155  Identities=17%  Similarity=0.071  Sum_probs=96.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eee-----------e-EEEEECC------------------eE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF-----------S-ANVVVDG------------------ST   54 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~-----------~-~~~~~~~------------------~~   54 (197)
                      +..+|+++|.+|||||||+++|.............. +..           . ....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457899999999999999999987522111000000 000           0 0011111                  12


Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.+|||+|+......   +...++.+++|+|+++......   .+....     +.|+++|+||+|+.+...      
T Consensus       109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~------  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVVE---KHPEIF-----RVADLIVINKVALAEAVG------  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHHH---HCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred             CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhhh---hhhhhh-----hcCCEEEEecccCCcchh------
Confidence            46779999995221111   1125688999999887643211   111211     478999999999975432      


Q ss_pred             CCCCccHHHHHHHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          135 GATPITTAQGEELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                          ...++..++.+..+ ..+++++||++|+|++++++++.+.+...
T Consensus       172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                34555666665543 35899999999999999999999987544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=4.4e-16  Score=120.88  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeeeeEEEEECCeE---------------EEEEEEecCCCcCcc--
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGST---------------VNLGLWDTAGQEDYN--   69 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~--   69 (197)
                      ++|+++|.||||||||+|+|.+.... ..+..++.......+.+++..               ..+++||+||+..+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987642 233333333223334444421               468899999998753  


Q ss_pred             --ccccc---CcCCCcEEEEEEECCC
Q 029177           70 --RLRPL---SYRGADVFLLAFSLIS   90 (197)
Q Consensus        70 --~~~~~---~~~~~~~~i~v~d~~~   90 (197)
                        .+...   .++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              23222   3689999999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.70  E-value=1.9e-16  Score=129.66  Aligned_cols=115  Identities=14%  Similarity=0.043  Sum_probs=82.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc--C----------------CCCC---CCCCceeeee--eEEEEECCeEEEEEEEec
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS--N----------------TFPT---DYVPTVFDNF--SANVVVDGSTVNLGLWDT   62 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~--~----------------~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~D~   62 (197)
                      +.=+|+|+|+.++|||||..+|+.  +                .+.+   .......+..  ...+.+++  +.++++||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            455799999999999999999962  1                1111   0001111111  22344455  77889999


Q ss_pred             CCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           63 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        63 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      |||.+|.......++-+|++++|+|+...-..... ..|... ..+  ++|.++++||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a-~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVC-RMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHH-HHT--TCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHH-HHh--CCceEEEEecccchhc
Confidence            99999999999999999999999999998776665 556444 333  7999999999998654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.69  E-value=4e-18  Score=124.84  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=92.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeee-------------EEEEEC-CeE-----------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GST-----------------   54 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~-----------------   54 (197)
                      +..+|+++|.+|||||||+++|....+...+.++....+.             ..+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            5689999999999999999999987654433344322211             222221 111                 


Q ss_pred             --EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcC
Q 029177           55 --VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLIN  132 (197)
Q Consensus        55 --~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~  132 (197)
                        ..+.+.|++|.-....   .+-...+..+.++|..+.......   +...+     +.|.++|+||+|+.+...    
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~~-----~~~~iiv~NK~Dl~~~~~----  181 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGIM-----KTADLIVINKIDLADAVG----  181 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhHh-----hcCCEEEEeccccCchhH----
Confidence              1344566666311100   011123445667775332211110   01111     468899999999976432    


Q ss_pred             CCCCCCccHHHHHHHHHHcC-CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          133 HPGATPITTAQGEELKKLIG-AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                            ...+++.++++..+ ..+++++||++|+|++++|+++.+.+.
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                  45566677766653 358999999999999999999988764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.68  E-value=5.7e-17  Score=138.66  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcC--C----------CCCC----CCC--ceee-eeeEEEE------------EC
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSN--T----------FPTD----YVP--TVFD-NFSANVV------------VD   51 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~--~----------~~~~----~~~--~~~~-~~~~~~~------------~~   51 (197)
                      +..+..||+|+|++|+|||||+++|+..  .          +.+.    ...  |... .......            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            4456789999999999999999999863  1          1110    000  1111 0111111            13


Q ss_pred             CeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           52 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        52 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      +..+.+++|||||+.+|...+..+++.+|++++|||+++..++... ..|.....   .++|+++++||+|+..
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            4468899999999999999999999999999999999999888776 55654443   2789999999999874

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.68  E-value=4.8e-18  Score=132.53  Aligned_cols=158  Identities=20%  Similarity=0.160  Sum_probs=91.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCcee--------------------eee---------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--------------------DNF---------------   44 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~---------------   44 (197)
                      ...+|+|+|.+|||||||+|+|++..+.+..      .|+..                    ..+               
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3569999999999999999999998764222      12200                    000               


Q ss_pred             ---------eEEEEECC-eEEEEEEEecCCCcC-------------cccccccCcCCCc-EEEEEEECCChhhHHHHHHH
Q 029177           45 ---------SANVVVDG-STVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFLLAFSLISKASYENISKK  100 (197)
Q Consensus        45 ---------~~~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~  100 (197)
                               ...+.+.+ ....+.||||||...             +......++..++ +++++.|.+....-... ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                     00011110 125688999999643             2223444555555 45556665543221121 12


Q ss_pred             HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHH--HHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGE--ELKKLIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +...+..  .+.|+++|+||+|+.+...          ...+...  .+....+..+++.+||+++.|++++++++.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3344333  3789999999999975321          0111111  0111123446788999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.67  E-value=8.7e-17  Score=125.49  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.||||||...   .....+..+|++++|+|.+..+....+ .       ....+.|+++|+||+|+.....      
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------  234 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------  234 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence            5788999999533   122335889999999998776544332 1       1112469999999999965322      


Q ss_pred             CCCCccHHHHHHHHHH---cC------CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          135 GATPITTAQGEELKKL---IG------AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                          . .....++...   .+      ..+++.+||++|+|++++++++.+.+.
T Consensus       235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence                1 1111222222   11      248999999999999999999998764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=2.3e-16  Score=129.29  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=78.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCceeeeeeE------EEEEC-----------------------Ce
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSA------NVVVD-----------------------GS   53 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~------~~~~~-----------------------~~   53 (197)
                      ...+|+|+|.+|+|||||+|+|++..+.   ....+++......      .+..+                       +.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4689999999999999999999998763   2223332110000      00000                       00


Q ss_pred             E---------EEEEEEecCCCcC-----------cccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC
Q 029177           54 T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP  113 (197)
Q Consensus        54 ~---------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  113 (197)
                      .         ..+.||||||...           |......++..+|++++|+|+++....... ..|+..+...  +.|
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p  220 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK  220 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence            0         2578999999864           233444567789999999999886444444 4566665543  679


Q ss_pred             EEEEeeCCCcccc
Q 029177          114 IVLVGTKQDLRED  126 (197)
Q Consensus       114 ~iiv~nK~D~~~~  126 (197)
                      +++|+||+|+...
T Consensus       221 vilVlNK~Dl~~~  233 (550)
T 2qpt_A          221 IRVVLNKADMVET  233 (550)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             EEEEEECCCccCH
Confidence            9999999999754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=9.3e-15  Score=114.00  Aligned_cols=83  Identities=16%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECC-------------------eEEEEEEEecCCCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED   67 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~   67 (197)
                      ++|+++|.||||||||+++|.+... ..++..++.........+.+                   ....+++||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999997532 22333332211111122221                   235788999999876


Q ss_pred             cccc----cc---cCcCCCcEEEEEEECCC
Q 029177           68 YNRL----RP---LSYRGADVFLLAFSLIS   90 (197)
Q Consensus        68 ~~~~----~~---~~~~~~~~~i~v~d~~~   90 (197)
                      +.+.    ..   ..++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            5422    11   23689999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=2.7e-16  Score=122.27  Aligned_cols=102  Identities=15%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.++||+|....   .......+|++++|+|+++....... ..   .+    -..|.++|+||+|+.+...      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence            56789999995321   22346789999999999876433222 11   11    1468899999999964321      


Q ss_pred             CCCCccHHHHHHHHHH---------cCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          135 GATPITTAQGEELKKL---------IGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          . ......+...         ...++++.+||++++|+++++++|.+.+
T Consensus       230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence                0 0111222211         1134789999999999999999998865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.59  E-value=1.4e-15  Score=113.66  Aligned_cols=120  Identities=11%  Similarity=-0.054  Sum_probs=68.9

Q ss_pred             EEEEEEecCCCcCcccccc------cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHh-hhCCCCCEEEEeeCCCcccch
Q 029177           55 VNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~  127 (197)
                      +.+.+|||||+........      ..+.. +++++++|.....+.......+..... ....+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5788999999876543221      13455 888889987654333332111111111 111268999999999987543


Q ss_pred             hhhcCCCCCCCc-cHHHH------------------HHHHHHcCC-cEEEEecccCCCCHHHHHHHHHHHH
Q 029177          128 QYLINHPGATPI-TTAQG------------------EELKKLIGA-AVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       128 ~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      .......   .+ ..+..                  .+++..++. .+++++||++++|++++++++.+.+
T Consensus       188 ~~~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          188 EKERHRK---YFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHHHHH---HHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHH---HHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            1000000   00 00000                  011234443 3789999999999999999998865

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=1.8e-15  Score=117.38  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.+|||||.......   ....+|++++|+|++..+.+..+ ..   ..    .+.|.++|+||+|+.+...      
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~~~------  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNHTN------  211 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCHHH------
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCChHH------
Confidence            57889999997654322   45889999999999765432211 10   00    1358899999999965321      


Q ss_pred             CCCCccH--HHHHHHHHHcC------CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          135 GATPITT--AQGEELKKLIG------AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       135 ~~~~~~~--~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                          ...  ++........+      ..+++.+||++|+|++++++++.+.+.
T Consensus       212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                111  12222222222      347899999999999999999988653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.57  E-value=8.9e-16  Score=127.92  Aligned_cols=171  Identities=12%  Similarity=0.018  Sum_probs=109.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCCCce----eeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYVPTV----FDNFSANVVVDGSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   70 (197)
                      -+|+|+|+.++|||||..+|+.  +....           ++.+..    .+..+..+.+....+.++++|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999874  22211           000000    011111122223336788999999999999


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--------cCC-C-------
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--------INH-P-------  134 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--------~~~-~-------  134 (197)
                      .....++-+|++++|+|+...-..... ..|......   ++|.++++||+|....+...        ... .       
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            999999999999999999987665554 455444433   68999999999976543111        000 0       


Q ss_pred             ------CCCCccHHH-----------------------------HHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          135 ------GATPITTAQ-----------------------------GEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       135 ------~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                            .......+.                             ...........|++..||+++.|++.+++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                  000000000                             011112234568899999999999999999998776


Q ss_pred             CCC
Q 029177          180 QPP  182 (197)
Q Consensus       180 ~~~  182 (197)
                      .+.
T Consensus       239 ~p~  241 (638)
T 3j25_A          239 SST  241 (638)
T ss_dssp             CSG
T ss_pred             Ccc
Confidence            543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=7.5e-14  Score=108.93  Aligned_cols=142  Identities=14%  Similarity=0.097  Sum_probs=90.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-------cccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~   78 (197)
                      ..+|++||.||||||||+|+|++... ..++..++.+.....+.+++  ..++++|+||...-.+.       ....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999998543 45566677777777778888  57789999996432221       1123578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +|++++|+|++++..-......-+..........|.+++.||.|...-..  ...........++...+...+.
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence            99999999999874322221222222222224678889999999754221  0011112245556666655554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.54  E-value=1.9e-13  Score=115.25  Aligned_cols=116  Identities=17%  Similarity=0.094  Sum_probs=80.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC--------C------CCCC---CCCceeeeee--EEEEECC-----eEEEEEEEe
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN--------T------FPTD---YVPTVFDNFS--ANVVVDG-----STVNLGLWD   61 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~--------~------~~~~---~~~~~~~~~~--~~~~~~~-----~~~~~~~~D   61 (197)
                      +.=+|+|+|+.++|||||..+|+..        .      +.+.   ......+..+  ..+.+.+     ..+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            4557999999999999999998731        1      1000   0000011111  1222221     357899999


Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      ||||.+|.......++-+|++++|+|+...-..... ..|.+....   ++|.++++||+|...
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence            999999999999999999999999999988766665 455555444   799999999999764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.52  E-value=1.7e-14  Score=121.16  Aligned_cols=157  Identities=18%  Similarity=0.091  Sum_probs=95.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeee-----------------------------------------
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-----------------------------------------   44 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~-----------------------------------------   44 (197)
                      .-+|+|+|.+++|||||+|+|++..+.+ ....++....                                         
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            4589999999999999999999976622 2111110000                                         


Q ss_pred             ----------eEEEEECCeEEEEEEEecCCCcCcc-------------cccccC-cCCCcEEEEEEECCChhhHHHHHHH
Q 029177           45 ----------SANVVVDGSTVNLGLWDTAGQEDYN-------------RLRPLS-YRGADVFLLAFSLISKASYENISKK  100 (197)
Q Consensus        45 ----------~~~~~~~~~~~~~~~~D~~g~~~~~-------------~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~  100 (197)
                                ...+...+ ...+.|+||||-....             .....+ ...+|++++|+|+++...-.+. ..
T Consensus       131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~  208 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  208 (772)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred             CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence                      00011111 1247799999964311             111122 2578999999999875443332 23


Q ss_pred             HHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH--HHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          101 WIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE--LKKLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       101 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++..+...  +.|+++|+||+|+.....          ........  +....+..+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            44555443  789999999999976432          11111100  0001244467889999999999999998873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=1.4e-13  Score=104.95  Aligned_cols=98  Identities=16%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             CcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc-HH
Q 029177           65 QEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT-TA  142 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~  142 (197)
                      ++++..+.+.++.++|++++|+|++++. ++..+ ..|+..+..  .++|+++|+||+|+.++..          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHHH
Confidence            6778888888999999999999999986 78776 788877765  3899999999999975432          22 34


Q ss_pred             HHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHH
Q 029177          143 QGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +..++.+..+. +++++||++|+|+++++..+..
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence            55666667776 8999999999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.42  E-value=1.4e-13  Score=98.02  Aligned_cols=106  Identities=7%  Similarity=-0.043  Sum_probs=69.4

Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhC--CCCCEEEEeeCC-CcccchhhhcCCCC
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKW---IPELRHYA--PTVPIVLVGTKQ-DLREDKQYLINHPG  135 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~p~iiv~nK~-D~~~~~~~~~~~~~  135 (197)
                      .+||..++..|.+|++++|++|||+|.+|++.++ ....+   ...+....  .+.|++|++||. |+.+.         
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---------  178 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  178 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence            3488899999999999999999999999986554 32333   23333332  578999999995 67543         


Q ss_pred             CCCccHHHHHHH---HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          136 ATPITTAQGEEL---KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       136 ~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                         ++..+..+.   ......+.+..|||.+|+|+.+.++|+.+.+..
T Consensus       179 ---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          179 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             ---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence               344333222   111234567889999999999999999987643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.40  E-value=2.8e-13  Score=104.85  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.|+||+|...-.   ......+|.+++++|.+..+....+ ..   .+.    ..|.++++||+|+.....      
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------  210 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence            577899999975321   1234689999999998754322111 10   011    236677789999753221      


Q ss_pred             CCCCccHHHHHHHHHHc---C------CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          135 GATPITTAQGEELKKLI---G------AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          ......+.+....   .      .++++.+||++++|++++++.|.+..
T Consensus       211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence                2222223332211   1      34788999999999999999998865

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=103.05  Aligned_cols=88  Identities=17%  Similarity=0.078  Sum_probs=50.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCcc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   69 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~   69 (197)
                      ..++|+++|.+|||||||+|+|.+..+.... ..++.......+.+.+.               ...+++||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3578999999999999999999987553332 22333333344444432               2358999999987654


Q ss_pred             c-------ccccCcCCCcEEEEEEECCChhh
Q 029177           70 R-------LRPLSYRGADVFLLAFSLISKAS   93 (197)
Q Consensus        70 ~-------~~~~~~~~~~~~i~v~d~~~~~s   93 (197)
                      +       .+...++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            4       23445789999999999986543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=94.74  Aligned_cols=106  Identities=8%  Similarity=-0.054  Sum_probs=74.3

Q ss_pred             cCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-CCcccchhhhcCCCC
Q 029177           62 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKK---WIPELRHY--APTVPIVLVGTK-QDLREDKQYLINHPG  135 (197)
Q Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~--~~~~p~iiv~nK-~D~~~~~~~~~~~~~  135 (197)
                      .+||...+..|..++++.|++|||+|.+|++.++.. ..   +...+...  ..+.|++|++|| .|+.+.         
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak-~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQ-DEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHH-HHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHH-HHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence            468899999999999999999999999999765422 22   22334332  358999999996 688543         


Q ss_pred             CCCccHHHHHHH---HHHcCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          136 ATPITTAQGEEL---KKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       136 ~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                         ++..+..+.   ......+.+..|||.+|+|+.|.++|+.+.+..
T Consensus       264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence               343333222   111234467789999999999999999998743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.26  E-value=1.6e-10  Score=90.75  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCceeeeeeEEEEECCe-------------E--EEEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-P-TDYVPTVFDNFSANVVVDGS-------------T--VNLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~D~~g~~~~   68 (197)
                      ...+++++|++|||||||+|+|.+... . ..+..++.......+.+.+.             .  ..+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999999654 2 33333444444555556541             1  35789999996442


Q ss_pred             cc-------ccccCcCCCcEEEEEEECCC
Q 029177           69 NR-------LRPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        69 ~~-------~~~~~~~~~~~~i~v~d~~~   90 (197)
                      .+       .+...++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22       12223578999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.03  E-value=3.3e-10  Score=88.57  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=73.7

Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ  143 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      .+++|++....+.+.+|++++|+|++++.      ..|...+.+...+.|+++|+||+|+....           ...+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence            45678888888888999999999999863      34555566555689999999999997532           22333


Q ss_pred             HHH----HHHHcCC--cEEEEecccCCCCHHHHHHHHHHHH
Q 029177          144 GEE----LKKLIGA--AVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       144 ~~~----~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ..+    +++..+.  .+++.+||++|+|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            333    3555565  2789999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.91  E-value=1e-09  Score=85.90  Aligned_cols=98  Identities=17%  Similarity=0.226  Sum_probs=72.0

Q ss_pred             CCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177           64 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ  143 (197)
Q Consensus        64 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      .+++|++....+++.++++++|+|++++.+      .|...+.+...+.|+++|+||+|+....           ...+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~  119 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK  119 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence            477888888888889999999999999874      2333344444578999999999997532           22333


Q ss_pred             HHHH----HHHcCC--cEEEEecccCCCCHHHHHHHHHHHH
Q 029177          144 GEEL----KKLIGA--AVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       144 ~~~~----~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ..++    .+..+.  .+++.+||++|+|++++++.+.+..
T Consensus       120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3333    455564  3789999999999999999998765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=8.9e-11  Score=91.89  Aligned_cols=138  Identities=11%  Similarity=0.114  Sum_probs=77.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC------CCC-CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc----c--
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN------TFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----L--   74 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----~--   74 (197)
                      .+++++|.+|+|||||+|+|++.      ... .....++..  .....+...   +.++||||-........    .  
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999975      221 112222222  122333332   67999999653321111    1  


Q ss_pred             --C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           75 --S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        75 --~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                        +  .+..+.++++++......+..+ .+ ++.+..  .+.|+++++||.|..+...           .......+.+.
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~  302 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ  302 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred             HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence              1  1568899999987433111121 11 112221  3689999999999876542           12223345555


Q ss_pred             cCCcEEEEecccCCCC
Q 029177          151 IGAAVYIECSSKTQQN  166 (197)
Q Consensus       151 ~~~~~~~~~Sa~~~~~  166 (197)
                      .+. .+...++.+.++
T Consensus       303 ~g~-~l~p~~~~~~~~  317 (369)
T 3ec1_A          303 LGE-LLSPPSKRYAAE  317 (369)
T ss_dssp             BTT-TBCSSCGGGTTT
T ss_pred             cCC-ccCCCCchhhhh
Confidence            554 455555544433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=4.5e-08  Score=77.47  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=61.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCc-eeeeeeEEEEECCeEEEEEEEecCCCcCccc----------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------   70 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------   70 (197)
                      ..++++|+|++|+|||||++.+.+..+....    .+. ............+-...+.++|++|-.....          
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3467999999999999999999986432211    111 1111111111122224688999998532100          


Q ss_pred             ----c-----------cc--cCcCCC--cE-EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           71 ----L-----------RP--LSYRGA--DV-FLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        71 ----~-----------~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                          .           ..  .....+  |+ ++++.|....-+..+.  .++..+.   .+.|+|+|.||+|....
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence                0           00  011222  34 4455566544443332  3334443   47899999999998654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.86  E-value=1.6e-09  Score=87.69  Aligned_cols=152  Identities=11%  Similarity=0.045  Sum_probs=85.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCce------------eeeeeEEEE-------------
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS------NTF----PTDYVPTV------------FDNFSANVV-------------   49 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~------~~~----~~~~~~~~------------~~~~~~~~~-------------   49 (197)
                      .+...|+++|.+||||||++++|..      .+.    .+.+.+..            ...+.....             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3466899999999999999999982      211    01111111            000000000             


Q ss_pred             ECCeEEEEEEEecCCCcCccc-cccc---C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCC
Q 029177           50 VDGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQD  122 (197)
Q Consensus        50 ~~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  122 (197)
                      .....+.+.|+||||...... .+..   .  +..+|.+++|+|++........    ...+..   .+|+ .+|.||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence            000225778999999764221 1100   0  1268999999999876442221    222332   2575 78899999


Q ss_pred             cccchhhhcCCCCCCCccHHHHHHHHHHcCCc-----------------EEEEecccCCCC-HHHHHHHHHHH
Q 029177          123 LREDKQYLINHPGATPITTAQGEELKKLIGAA-----------------VYIECSSKTQQN-VKTVFDAAIKV  177 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~  177 (197)
                      ......              .+.......+.+                 +.+.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            864321              122233334331                 123478999999 99999998876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.86  E-value=2.6e-08  Score=74.59  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------CCceeeeeeEEEEECCe--EEEEEEEecCCCcCccc---c--
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVFDNFSANVVVDGS--TVNLGLWDTAGQEDYNR---L--   71 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~---~--   71 (197)
                      .++++++|++|+|||||++.+++...+...        .+.........+.....  ...++++|++|-.....   .  
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            479999999999999999999873221110        01000000111111211  13678999998422100   0  


Q ss_pred             -----------------------cccCcCCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           72 -----------------------RPLSYRGADVFLLAFSLI-SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        72 -----------------------~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                                             ....+..++++++++|.. .+-+..+  ..++..+..   ..++++|.+|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence                                   011233568888888854 3323233  234445544   3899999999998654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.81  E-value=1.6e-10  Score=90.36  Aligned_cols=111  Identities=11%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc-----
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL-----   74 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----   74 (197)
                      .+++++|.+|+|||||+|+|++....        .....++..  ...+.+.+.   +.++||||-.........     
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            47999999999999999999985211        111122211  122333332   679999997543321111     


Q ss_pred             -----CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccch
Q 029177           75 -----SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK  127 (197)
Q Consensus        75 -----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  127 (197)
                           ..+..+.++++++......+..+ . .++.+..  .+.|+++++||.|..+..
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL-A-RFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce-E-EEEEecC--CCceEEEEecCccccccc
Confidence                 13567888888887433111121 1 1111221  368999999999988653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.75  E-value=1.2e-07  Score=74.91  Aligned_cols=166  Identities=12%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eee--eeEEEEECCeEEEEEEEecCCCcCcccc-----cccCcCC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDN--FSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPLSYRG   78 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~   78 (197)
                      ...++++|++|+|||||+|.+.+-..+....-.. ...  ....+......-.+.+||++|-......     ...-+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3579999999999999999999843221111000 000  0011111111114679999985321111     1111233


Q ss_pred             CcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh-cCCCCCCCccHHHHHHHH----HHc
Q 029177           79 ADVFLLAFSLI--SKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL-INHPGATPITTAQGEELK----KLI  151 (197)
Q Consensus        79 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~  151 (197)
                      .+..++ ++..  .+....     +...+...  +.|+++|.||.|+.--.++. ..++..+....+...++.    .+.
T Consensus       149 ~~~~~~-lS~G~~~kqrv~-----la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDID-----IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             CSEEEE-EESSCCCHHHHH-----HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEE-eCCCCccHHHHH-----HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            455554 7776  332222     22233322  68999999999975211111 111111111122333333    122


Q ss_pred             C--CcEEEEecc--cCCCCHHHHHHHHHHHHcC
Q 029177          152 G--AAVYIECSS--KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       152 ~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~  180 (197)
                      +  ....+.+|+  .++.|++++.+.+.+.+..
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            2  335788999  5566799999999887643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.74  E-value=1.1e-08  Score=77.09  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=66.7

Q ss_pred             EEecCCCcC-cccccccCcCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCC
Q 029177           59 LWDTAGQED-YNRLRPLSYRGADVFLLAFSLISKASYEN-ISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGA  136 (197)
Q Consensus        59 ~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  136 (197)
                      +-..|||.. ........+.++|+++.|+|+.++.+... ....|+       .+.|.++|+||+|+.+...        
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~--------   67 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAV--------   67 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHH--------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHH--------
Confidence            445788853 33445556889999999999999877642 113332       4789999999999965211        


Q ss_pred             CCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          137 TPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                          .+...++.+..+. +++.+||+++.|+++++..+.+.+.
T Consensus        68 ----~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           68 ----TQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ----HHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence                1222233334455 7999999999999999998877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.62  E-value=4e-08  Score=74.05  Aligned_cols=57  Identities=25%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC-CCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ..++++++|.||||||||+|+|.+... ... ...++...  ..+..+.   .+.+|||||...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcCC
Confidence            468999999999999999999998653 111 22222211  1222333   467999999743

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.59  E-value=2.3e-08  Score=74.58  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=34.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED   67 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~   67 (197)
                      ++++++|.+|+|||||+|+|.+...... .++.. +.....+..+.   .+++|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5999999999999999999998654211 11111 11111222222   567999999764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.45  E-value=2.1e-07  Score=76.61  Aligned_cols=64  Identities=19%  Similarity=0.098  Sum_probs=39.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEE---EE-CCeEEEEEEEecCCCcCc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANV---VV-DGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~~~~D~~g~~~~   68 (197)
                      ....+|+|+|.||||||||+|+|++........+++.... ....   .. ......+.++||||....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            3568899999999999999999998653222222221111 1111   11 112246779999997543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.41  E-value=5.3e-07  Score=71.71  Aligned_cols=139  Identities=15%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc----CCC------CCCCCCce-------eeeeeEEEEEC-----------------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS----NTF------PTDYVPTV-------FDNFSANVVVD-----------------   51 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~----~~~------~~~~~~~~-------~~~~~~~~~~~-----------------   51 (197)
                      ++..|+++|++||||||++..|..    ...      .+.+.+..       .......+...                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999987763    110      01111110       00000001100                 


Q ss_pred             -CeEEEEEEEecCCCcCccccc-c-----cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           52 -GSTVNLGLWDTAGQEDYNRLR-P-----LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        52 -~~~~~~~~~D~~g~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                       ...+.+.++||||........ .     .....+|.+++|+|++........    ...+...  -.+..+|.||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence             012667799999964322110 0     012357899999999875443332    1233322  23456889999986


Q ss_pred             cchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177          125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                      ...              ..+..+....+. |+..++.  |+++
T Consensus       253 ~~g--------------G~~ls~~~~~g~-PI~fig~--Ge~v  278 (443)
T 3dm5_A          253 AKG--------------GGALSAVAATGA-PIKFIGT--GEKI  278 (443)
T ss_dssp             SSH--------------HHHHHHHHTTCC-CEEEEEC--SSST
T ss_pred             ccc--------------cHHHHHHHHHCC-CEEEEEc--CCCh
Confidence            532              234555556665 6665554  4443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.32  E-value=5e-07  Score=71.96  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=39.1

Q ss_pred             EEEEEEecCCCcCccc-cc-----ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCCccc
Q 029177           55 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTV-P-IVLVGTKQDLRE  125 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~D~~~  125 (197)
                      +.+.++||||...... ..     -..+..+|.+++|+|++......    .....+.   +.. | ..+|.||.|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            5678999999754211 00     11223689999999987654211    1122222   245 6 789999999854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.24  E-value=2.8e-07  Score=68.73  Aligned_cols=94  Identities=12%  Similarity=0.002  Sum_probs=60.4

Q ss_pred             cCCCcCc-ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCcc
Q 029177           62 TAGQEDY-NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPIT  140 (197)
Q Consensus        62 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  140 (197)
                      .|||... .......+.++|+++.|+|+.++.+....  .. ..    . +.|.++|+||+|+.+...            
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l-~l----l-~k~~iivlNK~DL~~~~~------------   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GV-DF----S-RKETIILLNKVDIADEKT------------   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TS-CC----T-TSEEEEEEECGGGSCHHH------------
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HH-Hh----c-CCCcEEEEECccCCCHHH------------
Confidence            5777543 23445567899999999999998765432  11 11    1 689999999999965321            


Q ss_pred             HHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHH
Q 029177          141 TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      .+...++.+..+. ++ .+||+++.|+++++..+...
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            1222333444565 67 99999999999998876543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.18  E-value=1.7e-06  Score=65.75  Aligned_cols=91  Identities=21%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCc--cHHHHHHH
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPI--TTAQGEEL  147 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~  147 (197)
                      .+....+.++|.+++|+|+.++..-.....+++-.....  ++|.++|+||+|+.++..          .  ..+.....
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~  145 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAED  145 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHH
Confidence            344456889999999999997765333436666554443  789999999999976321          0  01222233


Q ss_pred             HHHcCCcEEEEecccCCCCHHHHHHH
Q 029177          148 KKLIGAAVYIECSSKTQQNVKTVFDA  173 (197)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~i~~~~~~  173 (197)
                      ....+. +++.+||.++.|+++++..
T Consensus       146 y~~~g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          146 YRNIGY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred             HHhCCC-eEEEEecCCCCCHHHHHhh
Confidence            334465 8899999999988776643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.09  E-value=5.5e-06  Score=65.84  Aligned_cols=90  Identities=12%  Similarity=0.034  Sum_probs=53.0

Q ss_pred             EEEEEEecCCCcC--cccc----ccc--CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           55 VNLGLWDTAGQED--YNRL----RPL--SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        55 ~~~~~~D~~g~~~--~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +.+.++||||...  ....    ...  ..-..+.+++|+|+.........    ...+...  -.+..+|.||.|....
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence            5677999999644  1110    000  01246899999999875443332    2233322  2356788999998642


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNV  167 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  167 (197)
                                    ...+.......+. |+..++.  |+++
T Consensus       254 --------------~G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 --------------GGGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             --------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             --------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence                          2345566666776 7766664  5554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.05  E-value=7.7e-08  Score=77.61  Aligned_cols=112  Identities=14%  Similarity=-0.060  Sum_probs=63.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeee-eEEEEECCeEEEEEEEecCCCcC--ccccc--------cc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED--YNRLR--------PL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~~   74 (197)
                      ..++|+++|.+|+||||+.++|...... ...++..... .......+......+||..|.+.  .+..+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998764210 1111111000 00000011112345788888732  22222        34


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQD  122 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  122 (197)
                      ++...++.++|+|.++. +.+.. ..|...+...  ..+++++-..++
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~~~~~  160 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVESICV  160 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEEECCC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEEEECC
Confidence            45567888999999998 44444 6777777665  445555443333

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.98  E-value=2.3e-06  Score=64.86  Aligned_cols=91  Identities=14%  Similarity=0.057  Sum_probs=54.0

Q ss_pred             EEEEEEecCCCcC--ccc-ccc-----cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCccc
Q 029177           55 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLRE  125 (197)
Q Consensus        55 ~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~  125 (197)
                      +.+.++||||...  ... ...     .....+|.+++|+|.+......   . ....+..   ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~-~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---D-LASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---H-HHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---H-HHHHHHh---hCCCCEEEEeCCCCCc
Confidence            5678999999766  211 110     1234689999999987532221   1 1222332   356 678899999753


Q ss_pred             chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177          126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT  169 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  169 (197)
                      .              ...+..+....+. |+..++  +|+++++
T Consensus       254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            2              2344567777776 666655  4666643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.96  E-value=4.8e-06  Score=69.18  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++|+|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            38999999999999999998864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.82  E-value=0.00014  Score=56.41  Aligned_cols=84  Identities=21%  Similarity=0.177  Sum_probs=55.4

Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH---Hc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK---LI  151 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  151 (197)
                      ...++|.+++|... ++..-.....+++-.....  ++|.+||+||+|+.++..            .+...++..   ..
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~------------~~~~~~~~~~y~~~  191 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG------------MDFVNEQMDIYRNI  191 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH------------HHHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh------------HHHHHHHHHHHHhC
Confidence            35789999988665 4543333336665554444  688899999999965321            111333333   44


Q ss_pred             CCcEEEEecccCCCCHHHHHHHH
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAA  174 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i  174 (197)
                      |. +++.+||.++.|++++...+
T Consensus       192 G~-~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          192 GY-RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             TC-CEEECBTTTTBTHHHHHHHH
T ss_pred             CC-cEEEEecCCCcCHHHHHHhc
Confidence            65 78999999999999887653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.78  E-value=3.6e-05  Score=61.43  Aligned_cols=25  Identities=12%  Similarity=0.115  Sum_probs=22.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+..-|.|+|++++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3566799999999999999999985

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.63  E-value=3.3e-05  Score=54.29  Aligned_cols=26  Identities=12%  Similarity=-0.003  Sum_probs=22.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+--.++++|++|+|||||++.+.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            33456999999999999999999775

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.62  E-value=3.2e-05  Score=54.98  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=20.8

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ||+....-.|+|+|++|+||||+++.+.+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34444445799999999999999998865

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.58  E-value=4.2e-05  Score=53.51  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +++++|++|+|||||++.+.+-
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999888763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.57  E-value=4.1e-05  Score=53.52  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|||||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.54  E-value=3.1e-05  Score=58.82  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|||||||+|.+.+.
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            6899999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.52  E-value=5.2e-05  Score=53.89  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.51  E-value=5.4e-05  Score=54.10  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +..+...|+|+|++|||||||++.+.+
T Consensus         2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            2 SAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ---CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            444557899999999999999988765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.49  E-value=6.4e-05  Score=54.28  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=21.1

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ||+..  ..|+++|++||||||+.+.|.+
T Consensus         1 mm~~~--~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            1 MTAIA--PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             --CCS--CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCC--eEEEEECCCCCCHHHHHHHHHH
Confidence            66542  4899999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.43  E-value=0.00022  Score=54.14  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      .++++|++|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.41  E-value=8.5e-05  Score=52.71  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.40  E-value=0.00012  Score=52.30  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -|+++|++||||||+++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.39  E-value=8.3e-05  Score=51.53  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.38  E-value=8.5e-05  Score=53.83  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      |....+...|+++|.+||||||+.+.|..
T Consensus         1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            1 MGASARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             ------CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCccccCcEEEEECCCCCCHHHHHHHHHH
Confidence            44445567899999999999999988864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.38  E-value=0.0001  Score=51.89  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999863

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.37  E-value=0.00012  Score=51.90  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.36  E-value=0.0001  Score=53.27  Aligned_cols=22  Identities=9%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|+|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999998874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.35  E-value=0.00012  Score=52.00  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -.|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            478999999999999999987753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.34  E-value=0.00011  Score=52.45  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.34  E-value=0.00011  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999998773

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00018  Score=51.15  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.30  E-value=0.00018  Score=50.43  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=22.3

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      |+......|++.|.+||||||+.+.|..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            3333446799999999999999988865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.29  E-value=0.0002  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -|++.|.+||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998763

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.27  E-value=0.00018  Score=50.36  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=21.8

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+...|+++|.+||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999888654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.27  E-value=0.00013  Score=52.09  Aligned_cols=24  Identities=13%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ....|+|+|++|+|||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.27  E-value=0.00015  Score=51.58  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .-|+++|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.24  E-value=0.00018  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+++|++||||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.23  E-value=0.00018  Score=49.42  Aligned_cols=19  Identities=16%  Similarity=0.079  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 029177            9 KCVTVGDGAVGKTCMLISY   27 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l   27 (197)
                      -|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.23  E-value=0.00018  Score=49.43  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.22  E-value=0.00023  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.21  E-value=0.00029  Score=48.73  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      --.|+++|++|+||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.20  E-value=0.0002  Score=52.33  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999888764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.19  E-value=0.00019  Score=51.21  Aligned_cols=24  Identities=21%  Similarity=0.066  Sum_probs=21.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +...|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.19  E-value=0.00021  Score=50.13  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|++|+||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.18  E-value=0.00023  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999888754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.18  E-value=0.00022  Score=51.09  Aligned_cols=21  Identities=19%  Similarity=0.120  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.17  E-value=0.00022  Score=55.28  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.16  E-value=0.00023  Score=50.98  Aligned_cols=21  Identities=19%  Similarity=0.066  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.16  E-value=0.00033  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.15  E-value=0.00027  Score=51.85  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHh
Q 029177            7 FIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~   28 (197)
                      .-.|+|+|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.14  E-value=0.00034  Score=51.29  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=21.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +..+|++.|++||||||+.++|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.11  E-value=0.00028  Score=50.07  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|+|+|.+||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.11  E-value=0.00035  Score=48.92  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.10  E-value=0.0003  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.10  E-value=0.00025  Score=51.43  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999888764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.00033  Score=49.63  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999988864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.09  E-value=0.00041  Score=48.36  Aligned_cols=23  Identities=13%  Similarity=0.073  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.09  E-value=0.00027  Score=49.84  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            588999999999999988776

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.08  E-value=0.00032  Score=50.17  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.07  E-value=0.00029  Score=48.73  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.07  E-value=0.00031  Score=52.53  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.07  E-value=0.0004  Score=49.17  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .....|+++|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.07  E-value=0.00033  Score=50.40  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.07  E-value=0.00034  Score=48.85  Aligned_cols=22  Identities=23%  Similarity=0.071  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.07  E-value=0.00048  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=21.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+...|++.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999988864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.06  E-value=0.00032  Score=52.07  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.06  E-value=0.00035  Score=48.62  Aligned_cols=22  Identities=18%  Similarity=0.104  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++++...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5889999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.06  E-value=0.00038  Score=49.19  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.06  E-value=0.00037  Score=50.97  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.05  E-value=0.00043  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.05  E-value=0.00043  Score=48.96  Aligned_cols=23  Identities=22%  Similarity=0.134  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.04  E-value=0.00034  Score=52.05  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988774

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.04  E-value=0.00035  Score=51.75  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.04  E-value=0.00034  Score=48.91  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.04  E-value=0.00039  Score=51.17  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.04  E-value=0.0004  Score=50.96  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.04  E-value=0.00033  Score=49.71  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+|+|++||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            799999999999999998876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.03  E-value=0.00038  Score=52.82  Aligned_cols=21  Identities=19%  Similarity=0.176  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++|+|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999988775

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.02  E-value=0.00036  Score=51.79  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998876

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.01  E-value=0.00039  Score=49.28  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--|+++|++|+||||+.+.+.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.01  E-value=0.00039  Score=51.66  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.01  E-value=0.00036  Score=48.50  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999888653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.00  E-value=0.00045  Score=50.23  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.00  E-value=0.00045  Score=48.15  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.00  E-value=0.00036  Score=52.85  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|++|+|||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998743

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.99  E-value=0.00041  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.99  E-value=0.00045  Score=49.68  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.99  E-value=0.00037  Score=49.93  Aligned_cols=21  Identities=14%  Similarity=0.166  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.99  E-value=0.00042  Score=51.28  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.99  E-value=0.00043  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.98  E-value=0.00044  Score=50.97  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.97  E-value=0.00046  Score=47.93  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-.|+++|.+|+||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.97  E-value=0.00025  Score=51.45  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=14.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh-cC
Q 029177            9 KCVTVGDGAVGKTCMLISYT-SN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~-~~   30 (197)
                      -++++|++||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 53

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.97  E-value=0.00053  Score=50.48  Aligned_cols=25  Identities=16%  Similarity=0.108  Sum_probs=21.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.97  E-value=0.00048  Score=51.08  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999988764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.95  E-value=0.00037  Score=49.92  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.95  E-value=0.00048  Score=51.28  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.95  E-value=0.00053  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999988764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.95  E-value=0.00057  Score=51.44  Aligned_cols=24  Identities=17%  Similarity=0.091  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...-|++.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.94  E-value=0.00052  Score=51.21  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.94  E-value=0.00067  Score=51.83  Aligned_cols=25  Identities=20%  Similarity=0.024  Sum_probs=21.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..++-|+|+|++|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.94  E-value=0.00069  Score=51.07  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=21.3

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+...|+|+|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.94  E-value=0.00049  Score=50.84  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.92  E-value=0.00071  Score=51.54  Aligned_cols=25  Identities=20%  Similarity=0.074  Sum_probs=21.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+..-|+|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456799999999999999988876

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.91  E-value=0.00045  Score=49.77  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.91  E-value=0.00053  Score=51.04  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.00024  Score=49.27  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999888763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.90  E-value=0.00061  Score=46.62  Aligned_cols=21  Identities=14%  Similarity=0.094  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.89  E-value=0.00064  Score=47.96  Aligned_cols=25  Identities=20%  Similarity=0.058  Sum_probs=22.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +...|+|+|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.89  E-value=0.00069  Score=49.62  Aligned_cols=23  Identities=17%  Similarity=0.059  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+|+|+.|||||||++.+.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998866

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.88  E-value=0.00049  Score=53.55  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -+++|+|++|+|||||++.+.+-
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988774

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.88  E-value=0.00066  Score=50.43  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999887653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.87  E-value=0.00064  Score=49.10  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.87  E-value=0.00079  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=21.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ....|+|+|++|+||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999988764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.86  E-value=0.00066  Score=48.27  Aligned_cols=23  Identities=17%  Similarity=-0.107  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.84  E-value=0.00045  Score=47.97  Aligned_cols=23  Identities=22%  Similarity=-0.012  Sum_probs=16.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.82  E-value=0.00065  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.074  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.82  E-value=0.00077  Score=46.60  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..++++|.+|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.82  E-value=0.0005  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.148  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.81  E-value=0.0012  Score=46.14  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999988865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.81  E-value=0.00049  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999887653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.81  E-value=0.00022  Score=50.23  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|++.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.79  E-value=0.00075  Score=48.46  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=20.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.79  E-value=0.0008  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988866

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.78  E-value=0.00094  Score=49.19  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHh
Q 029177            8 IKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~   28 (197)
                      ..|+|+|++||||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998887

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.78  E-value=0.00091  Score=46.33  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999888663

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.77  E-value=0.001  Score=47.14  Aligned_cols=24  Identities=17%  Similarity=0.037  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ....|+++|++|+||||+++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.77  E-value=0.00065  Score=50.05  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ....|+++|++||||||+.+.|..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.75  E-value=0.00082  Score=50.21  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.74  E-value=0.00056  Score=46.25  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.74  E-value=0.00086  Score=52.10  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            4789999999999999888764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.74  E-value=0.00073  Score=52.39  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999988774

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.74  E-value=0.00089  Score=48.24  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|+++|+|||||+|...+|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367799999999999988865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.73  E-value=0.00096  Score=45.81  Aligned_cols=21  Identities=19%  Similarity=0.154  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.72  E-value=0.00084  Score=52.10  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++|+|++|+||||+++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.72  E-value=0.0012  Score=47.31  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=20.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.72  E-value=0.00087  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-.++++|++||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.72  E-value=0.00091  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.72  E-value=0.0009  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.72  E-value=0.00092  Score=49.30  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.71  E-value=0.0011  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHH
Q 029177            6 RFIKCVTVGDGAVGKTCMLISY   27 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l   27 (197)
                      +.+||+++|.+|||||||+.++
T Consensus        32 ~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHH
Confidence            4689999999999999999775

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.71  E-value=0.00086  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.71  E-value=0.00032  Score=50.04  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.70  E-value=0.0011  Score=48.16  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...|+++|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.69  E-value=0.0012  Score=48.82  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.69  E-value=0.001  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.69  E-value=0.00098  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            4789999999999999988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.68  E-value=0.001  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            4789999999999999988764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.68  E-value=0.001  Score=51.72  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999988764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.65  E-value=0.0011  Score=50.35  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--++++|+.||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.65  E-value=0.0013  Score=45.01  Aligned_cols=21  Identities=19%  Similarity=0.169  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.65  E-value=0.0012  Score=48.13  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +.+.|++.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.64  E-value=0.0011  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999988764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.64  E-value=0.0012  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +...|+|+|++|+|||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.64  E-value=0.0011  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999988764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.63  E-value=0.0012  Score=45.73  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -..|+++|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988866

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.63  E-value=0.001  Score=51.88  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++|+|++|+||||+++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.63  E-value=0.0011  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.61  E-value=0.001  Score=51.13  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.61  E-value=0.00092  Score=48.49  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.-|++.|+.|+||||+++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457999999999999999988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.61  E-value=0.00098  Score=51.83  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999774

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.61  E-value=0.0014  Score=49.18  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +.+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.57  E-value=0.0018  Score=49.66  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=50.0

Q ss_pred             EEEEEecCCCcCcccccccC------cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           56 NLGLWDTAGQEDYNRLRPLS------YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        56 ~~~~~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      .+.+.|++|...........      .-..|-.+++.|..........    ...+.... + .-.++.||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~~-~-it~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEAV-K-IDGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHHS-C-CCEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHhc-C-CCEEEEeCcCCccc---
Confidence            45579999975432211111      1136888999997765433222    22233221 2 23677899997432   


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177          130 LINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT  169 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  169 (197)
                                 .-.+.......+. |+..++  +|+++++
T Consensus       284 -----------~G~~l~~~~~~~~-pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          284 -----------GGAALSISYVIDA-PILFVG--VGQGYDD  309 (328)
T ss_dssp             -----------CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred             -----------hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence                       1234566777776 666665  6666543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.56  E-value=0.0013  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.55  E-value=0.0011  Score=45.72  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999888653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.54  E-value=0.00092  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4789999999999999988764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.53  E-value=0.0014  Score=50.37  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.51  E-value=0.0014  Score=51.96  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|+|+.|+||||+++.+.+-
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998873

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.50  E-value=0.0016  Score=46.49  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..-|+++|.+|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.49  E-value=0.0018  Score=46.74  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+++.|++|+|||++++.+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.49  E-value=0.0022  Score=48.67  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=20.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...--|+|+|++|||||||...+..
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHH
Confidence            3344688999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.48  E-value=0.0024  Score=46.34  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.-|++.|++|+||||+++.+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.47  E-value=0.0017  Score=46.35  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.47  E-value=0.0016  Score=47.81  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.++++|++|+||||+++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3689999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.47  E-value=0.0014  Score=51.44  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            578999999999999988876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.44  E-value=0.0018  Score=46.94  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.44  E-value=0.0015  Score=48.08  Aligned_cols=21  Identities=24%  Similarity=0.083  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|+++|++|+||||+.+.|..
T Consensus        50 ~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           50 SMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.44  E-value=0.0017  Score=50.38  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--++++|+.||||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34689999999999999987764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.44  E-value=0.0015  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++|+|++||||||+++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998743

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.43  E-value=0.0017  Score=45.05  Aligned_cols=21  Identities=19%  Similarity=0.088  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.42  E-value=0.0015  Score=49.09  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.41  E-value=0.0024  Score=45.07  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+.|++.|.+||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999999888653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.41  E-value=0.00091  Score=51.81  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.41  E-value=0.0019  Score=48.64  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|++.|.+||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.40  E-value=0.0022  Score=45.24  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888763

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.36  E-value=0.002  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--++|+|++|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999988764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.36  E-value=0.0019  Score=49.89  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      +++++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0016  Score=52.29  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999988763

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.30  E-value=0.0024  Score=45.87  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -+++.|++|+||||+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.30  E-value=0.0026  Score=42.53  Aligned_cols=23  Identities=13%  Similarity=-0.000  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..|++.|++|+|||++.+.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999988764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.30  E-value=0.0089  Score=47.69  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~   28 (197)
                      ...-|.|+|+.++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            45567899999999999999554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.28  E-value=0.0025  Score=45.14  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999888653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.28  E-value=0.012  Score=45.84  Aligned_cols=19  Identities=21%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.24  E-value=0.0032  Score=48.37  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.23  E-value=0.003  Score=45.82  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.++|+|||||||+..+|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.22  E-value=0.0016  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|+|..|+|||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4688999999999999999975

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.22  E-value=0.0026  Score=49.68  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.19  E-value=0.0034  Score=42.31  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.18  E-value=0.0028  Score=47.18  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.18  E-value=0.0028  Score=47.54  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            47999999999999999998763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.17  E-value=0.0031  Score=46.26  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.17  E-value=0.004  Score=47.52  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.14  E-value=0.005  Score=47.57  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ....+|+++|++|+||||+.+.+..
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999976543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.13  E-value=0.0042  Score=49.20  Aligned_cols=24  Identities=21%  Similarity=0.144  Sum_probs=20.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..-|+++|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999998763

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.12  E-value=0.0031  Score=50.78  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++|+|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999988875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.11  E-value=0.0035  Score=51.31  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.11  E-value=0.003  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999888753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.11  E-value=0.0026  Score=45.34  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|+||+||||++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999877765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.11  E-value=0.0018  Score=48.81  Aligned_cols=23  Identities=9%  Similarity=0.190  Sum_probs=16.8

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+-|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999988764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.09  E-value=0.0031  Score=52.15  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999888764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.07  E-value=0.003  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.07  E-value=0.0041  Score=45.13  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ....|+++|.+|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.05  E-value=0.0036  Score=51.76  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999888764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.04  E-value=0.0044  Score=43.77  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|.|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.04  E-value=0.0036  Score=47.25  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+|||+|++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999988764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.04  E-value=0.0036  Score=47.66  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+|||||++.+..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999988876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.02  E-value=0.0038  Score=44.22  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      ..|+++|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            368999999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.01  E-value=0.0036  Score=45.38  Aligned_cols=21  Identities=19%  Similarity=0.207  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.00  E-value=0.0038  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.98  E-value=0.0047  Score=46.48  Aligned_cols=24  Identities=13%  Similarity=-0.081  Sum_probs=20.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +.-+++.|+||+|||+|++.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456788899999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0041  Score=51.68  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999998874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.93  E-value=0.0062  Score=44.00  Aligned_cols=26  Identities=15%  Similarity=-0.036  Sum_probs=21.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..+..-|++.|.+|+||||+++.+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999988764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.93  E-value=0.0056  Score=46.11  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999976654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.0039  Score=48.23  Aligned_cols=22  Identities=23%  Similarity=0.129  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+++.|++|+|||||++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.91  E-value=0.0047  Score=46.38  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+++.|++|+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.90  E-value=0.004  Score=46.98  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHh
Q 029177            8 IKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~   28 (197)
                      -.++++|++|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998765

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.90  E-value=0.0041  Score=44.42  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+.|++.|.+|+||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.89  E-value=0.0075  Score=44.65  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..-.+++.|++|+|||++++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999988763

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.89  E-value=0.0038  Score=46.12  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +...|++.|.+||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999887654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.88  E-value=0.0048  Score=47.89  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.87  E-value=0.0037  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999888663

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.87  E-value=0.0051  Score=51.08  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999998874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.86  E-value=0.0051  Score=46.67  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=19.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .--|+++|++|+||||++..+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34689999999999999987653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.86  E-value=0.0056  Score=44.55  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ...|++-|.+||||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999988763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.85  E-value=0.0053  Score=42.78  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      ++|+|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.83  E-value=0.0041  Score=47.80  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999988766

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.83  E-value=0.0031  Score=52.07  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999976655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.83  E-value=0.005  Score=50.39  Aligned_cols=22  Identities=18%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.82  E-value=0.0062  Score=43.77  Aligned_cols=28  Identities=21%  Similarity=0.043  Sum_probs=22.5

Q ss_pred             CCCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            1 MMNTARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         1 ~~~~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ||..  -.-|++-|.+|+||||+++.+...
T Consensus         1 ~m~~--g~~i~~eG~~g~GKst~~~~l~~~   28 (216)
T 3tmk_A            1 MMGR--GKLILIEGLDRTGKTTQCNILYKK   28 (216)
T ss_dssp             CCCC--CCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence            6643  346889999999999999988763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.80  E-value=0.0046  Score=47.80  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.79  E-value=0.016  Score=44.03  Aligned_cols=43  Identities=9%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             cEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 029177           80 DVFLLAFSLISKAS-YENISKKWIPELRHYAPTVPIVLVGTKQDL  123 (197)
Q Consensus        80 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  123 (197)
                      ..-++++|=-+.-+ -+.. ..++..+....++.++|+..|..+.
T Consensus       105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence            55666776555443 3332 4455555554456788888877663

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.78  E-value=0.0027  Score=42.39  Aligned_cols=23  Identities=9%  Similarity=0.075  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999877553

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.77  E-value=0.0063  Score=45.81  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999887653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.76  E-value=0.0063  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.76  E-value=0.0056  Score=46.97  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999888764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.75  E-value=0.0067  Score=41.98  Aligned_cols=23  Identities=13%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -+++.|++|+||||+...|....
T Consensus        18 gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            58999999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.75  E-value=0.0042  Score=51.40  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999877653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.73  E-value=0.0065  Score=50.49  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.71  E-value=0.0083  Score=43.00  Aligned_cols=24  Identities=13%  Similarity=-0.024  Sum_probs=20.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +-.-|++-|.+|+||||+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999988865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.70  E-value=0.0062  Score=46.50  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|+||+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            36999999999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.65  E-value=0.0066  Score=46.51  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+||||+++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999887653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.007  Score=50.29  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcCC
Q 029177           10 CVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~   31 (197)
                      ++++|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998743

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.62  E-value=0.0057  Score=47.34  Aligned_cols=24  Identities=17%  Similarity=0.051  Sum_probs=20.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .-.+++.|++|+||||+++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.62  E-value=0.0075  Score=45.93  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|+||+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.61  E-value=0.0071  Score=46.09  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4889999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.61  E-value=0.008  Score=46.13  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -|+|+|++|||||||...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.60  E-value=0.0031  Score=46.56  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998876

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.58  E-value=0.0085  Score=47.17  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHh---cCCCCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYT---SNTFPT   34 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~---~~~~~~   34 (197)
                      .+.+|++++|...|||||++.++.   ++.|..
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~   70 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQMRILHVNGFNG   70 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHHHHHHCCC---
T ss_pred             hccceEEEecCCCCchhhHHHHHHHHhCCCCCh
Confidence            357999999999999999997654   345543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.56  E-value=0.0065  Score=48.88  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -+++++|+||+|||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.55  E-value=0.011  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -|+|+|++|||||||...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5889999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.53  E-value=0.0078  Score=45.98  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            36899999999999999998654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.53  E-value=0.009  Score=42.39  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999998764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.52  E-value=0.0088  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.+++.|++|+|||+|+..+..
T Consensus       153 ~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.51  E-value=0.0083  Score=44.20  Aligned_cols=24  Identities=13%  Similarity=0.199  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      ..+++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999987653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.51  E-value=0.0068  Score=46.80  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+|||++++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.48  E-value=0.0056  Score=44.36  Aligned_cols=23  Identities=22%  Similarity=0.033  Sum_probs=16.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.-|++.|.+||||||+++.+..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999988765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.45  E-value=0.0073  Score=46.11  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|.|++|+|||||++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            4889999999999999988763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.45  E-value=0.0073  Score=49.29  Aligned_cols=19  Identities=26%  Similarity=0.459  Sum_probs=0.0

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      ++|+|++|+|||||++.|.
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.41  E-value=0.0085  Score=49.14  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|++|+|||||++.+.+
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0091  Score=47.41  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|++.|+||+|||+|++++.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999875

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.40  E-value=0.0092  Score=46.41  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999888763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.38  E-value=0.0091  Score=43.50  Aligned_cols=24  Identities=17%  Similarity=0.057  Sum_probs=20.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +..-|++.|.+|+||||+++.+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999988765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.38  E-value=0.0082  Score=47.26  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++|+|++|+|||||+..+.-
T Consensus       180 i~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	9e-49
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-43
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-42
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	3e-41
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-40
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-39
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-38
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-37
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-37
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	9e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-35
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-34
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-34
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-33
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-33
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-33
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-32
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-32
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-32
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-28
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-28
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	5e-28
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-28
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-28
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-27
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-26
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-25
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-25
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-25
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-25
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	9e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-21
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-21
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-21
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-20
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-20
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-17
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	6e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	6e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-16
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-16
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-15
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-15
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-14
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	5e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-13
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-11
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-09
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-06

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 9e-49
 Identities = 101/198 (51%), Positives = 136/198 (68%), Gaps = 9/198 (4%)

Query: 2   MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 61
           M T   IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+D
Sbjct: 1   MQT---IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 57

Query: 62  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQ 121
           TAGQEDY+RLRPLSY   DVFL+ FS++S +S+EN+ +KW+PE+ H+ P  P +LVGT+ 
Sbjct: 58  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 117

Query: 122 DLREDKQYLINHPGATPIT--TAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           DLR+D   +                E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

Query: 180 QPPKPKKRKRKARPCIFL 197
           +PP+PKK +R    C+ L
Sbjct: 178 EPPEPKKSRR----CVLL 191

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (356), Expect = 2e-43
 Identities = 114/179 (63%), Positives = 138/179 (77%), Gaps = 2/179 (1%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE 125
           EDY+RLRPLSY   DV L+ FSL+S AS+EN+  KW PE+RH+ P  PI+LVGTK DLR+
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 126 DKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182
           DK  +  +     TPIT  QG  + K IGA  Y+ECS+ TQ+ +KTVFD AI+ VL PP
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 2e-42
 Identities = 97/176 (55%), Positives = 133/176 (75%), Gaps = 2/176 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DVFL+ FS+++ AS++N+ ++W+PEL+ YAP VP +L+GT+ DLR+D 
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129

Query: 128 QYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           + L  +N     PI   QG++L K IGA  Y+ECS+ TQ+ +KTVFD AI  +L P
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (340), Expect = 3e-41
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YRGA   +L + +  + ++ NI + +     H      ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                        T  QGE L K +G   +IE S+K   NV  +F    K++ +
Sbjct: 123 VV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 4e-40
 Identities = 88/175 (50%), Positives = 115/175 (65%), Gaps = 2/175 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+RLRPLSY   DV L+ FS+ S  S ENI +KW PE++H+ P VPI+LVG K+DLR D+
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 128 QYLINH--PGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (327), Expect = 3e-39
 Identities = 67/176 (38%), Positives = 103/176 (58%), Gaps = 3/176 (1%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ +RPLSY  +D  L+ F +    + +++ KKW  E++ + P   ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 128 QYLI--NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN-VKTVFDAAIKVVLQ 180
             L+  ++   TP++  QG  + K IGAA YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YR A+  +L + +  + S+  + +      ++ +  V  VLVG K DL E 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVF-DAAIKVVLQ 180
           ++             ++ +++        Y+E S+K   NV+ +F D A +++ +
Sbjct: 126 REVSQQR----AEEFSEAQDMY-------YLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (319), Expect = 1e-37
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YRG+   ++ + +  + S+  +        R+   TV  +LVG K DL++ 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKK 186
           +    +                       ++E S+    NV+  F    + + +    + 
Sbjct: 127 RVVEYDVAKEFADAN-----------KMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 187 RKRKARP 193
                + 
Sbjct: 176 LNETTQK 182

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (313), Expect = 4e-37
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 66
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YRGA   +L + + ++ S++NI         H +  V  +++G K D+ + 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +Q           +  +GE+L    G   ++E S+K   NV+  F    + +  
Sbjct: 127 RQV----------SKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKA 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 9e-36
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YRGA   L+ + +  +++Y ++S           P   I+L+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           +            T  + ++  +  G   ++E S+KT +NV+  F  A K
Sbjct: 125 RDV----------TYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 8e-35
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 12/179 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + VDG T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y R+    YRGA   LL + +    +YEN+ +       H    + I+LVG K DLR  +
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKK 186
                        T +     +    + +IE S+    NV+  F   +  + +    K+
Sbjct: 126 AV----------PTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTVN 56
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 57  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIV 115
           L LWDTAGQE +  L    +R A  FLL F L S+ S+ N+         +       IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 116 LVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAI 175
           L+G K DL + ++              Q  EL    G   Y E S+ T QNV+   +  +
Sbjct: 126 LIGNKADLPDQREV----------NERQARELADKYGIP-YFETSAATGQNVEKAVETLL 174

Query: 176 KVVLQ 180
            ++++
Sbjct: 175 DLIMK 179

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y  +    YRGA  F+L + + ++ S+  +         +      ++LVG K D+ +++
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 12/170 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +R L  +    F+L +SL+++ S+++I       +R      VP++LVG K DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           ++           ++++G  L +  G   ++E S+K++  V  +F   ++
Sbjct: 124 REV----------SSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-33
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K + +G+   GK+C+L  +    F  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  +    YRGA   LL + + S+ +Y  ++          +  + I+L G K+DL  D+
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +             AQ  EL        ++E S+ T +NV+  F    + +L 
Sbjct: 127 EVTFLE----ASRFAQENELM-------FLETSALTGENVEEAFVQCARKILN 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 5e-33
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 67
           K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  +    YRGA   LL + +  + ++ +++       +H +  + I+L+G K DL   +
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                          +GE   +  G   ++E S+KT  NV+  F    K + +
Sbjct: 125 DV----------KREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 66
           K + VGD  VGKTC+L+ +    F    ++ TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  +    YR A   LL + + +KAS++NI         +    V ++L+G K D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +           +    GE+L K  G   ++E S+KT  NV   F A  K + +
Sbjct: 128 R----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 12/176 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQE 66
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  L P  YRGA   +L + +  + ++  +         +      + ++   +  +E+
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182
           ++          +   +G +  +      +IE S+KT   V+  F+  ++ ++Q P
Sbjct: 128 RE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 67
           K V +G+ +VGKT ++  +  ++F   Y  T+  +F +  +  +  T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  L P   R +   ++ + + +  S++  +K            V I+LVG K DL + +
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           Q  I             E   K +    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 18/179 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 66
            K + +GDG VGK+ ++  Y +N F T    T+   F    + VDG  V + +WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQ 121
            +  LR   YRG+D  LL FS+    S++N+   W  E  +YA      + P V++G K 
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 125

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           D+ E +            +T + +   +  G   Y E S+K   NV   F+ A++ VL 
Sbjct: 126 DISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQE+
Sbjct: 7   HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
           +  +R    R    FLL F++  + S+  + K +   LR       P+VLVG K DL   
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           +Q             ++          A Y E S+K + NV   F+  ++ V +
Sbjct: 127 RQV----------PRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK 169

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  101 bits (253), Expect = 4e-28
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLRED 126
             +R   +R  + FL  FS I++      +  +  ++        VP +LVG K DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           +Q           +  + +          Y+E S+KT+ NV  VF   ++ + 
Sbjct: 125 RQV----------SVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIR 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 4e-28
 Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 67
           K V +G+G VGKT +++ Y  N F   ++ T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           ++ L P+ YR ++  +L + +  + S++ +        +     + + +VG K DL +++
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       +  + E   + +GA  +   S+K  + ++ +F    K +++
Sbjct: 125 HV----------SIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 5e-28
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLR 124
           E +  +R L  +    F L +S+ +++++ ++       LR      VP++LVG K D  
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD-- 119

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
                         +   QG+ L +      ++E S+K++ NV  +F   ++
Sbjct: 120 --------LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 6e-28
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 67
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           Y+ L P+ YRGA   ++ + + ++ S+           R  +P + I L G K DL   +
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                          Q  +      + +++E S+KT  NV  +F A  K + +
Sbjct: 128 AV-----------DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 6e-28
 Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLRED 126
           + +R    R  + FL  F++ +  S+E+I  ++  +++       VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                         + Q ++L +  G   YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TV-----------ESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQ 65
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQ 121
           E +  L    YRGAD  +L + + + +S+ENI       L H       T P V++G K 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           D  E K+          ++    +EL K +G       S+K   NV T F+   +  LQ
Sbjct: 123 DAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 3e-26
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           + V VG G VGK+ + I +  + F TDY PT+ D+++   V+D     L + DTAGQE++
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELR-HYAPTVPIVLVGTKQDLREDK 127
             +R    R  + FLL FS+  + S+E I K     LR       P++L+G K DL   +
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR 126

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
           Q           T  +G++L + +    Y+E S+K + NV   F   ++V+ +
Sbjct: 127 QV----------TQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 66
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
            +  L P+ YR A   L+ + +    S+              +  + I LVG K D+ ++
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
                   G   +   +GE+L +  G   + E S+KT +NV  VF    +
Sbjct: 124 G-------GERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 2e-25
 Identities = 36/172 (20%), Positives = 80/172 (46%), Gaps = 12/172 (6%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDTAG 64
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++   +WDTAG
Sbjct: 3   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR 124
            E +  L P+ YRG+   ++ + +  + ++  +        +H  P++ + + G K DL 
Sbjct: 63  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
           + ++ +              ++    I  A+++E S+K   N+  +F    +
Sbjct: 123 DVREVMER----------DAKDYADSIH-AIFVETSAKNAININELFIEISR 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 2e-25
 Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKK--WIPELRHYAPTVPIVLVGTKQDLRE 125
           +  ++ LS      F+L +S+ S+ S E +      I E++    ++PI+LVG K     
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK----- 117

Query: 126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPK 185
                 +   +  + +++ E L +    A ++E S+K   NVK +F   + +       K
Sbjct: 118 -----CDESPSREVQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLE------K 165

Query: 186 KRK 188
           +R 
Sbjct: 166 RRT 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.6 bits (231), Expect = 8e-25
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 16/186 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQE 66
           +K + +GD  VGKT ++  Y +  F   Y  T+     +  V+VD   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP----TVPIVLVGTKQD 122
            +  L    YRGAD  +L F + +  +++ +       L   +P      P V++G K D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPP 182
           L   +             T + +          Y E S+K   NV+  F    +  L+  
Sbjct: 123 LENRQV-----------ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 183 KPKKRK 188
              +  
Sbjct: 172 TEVELY 177

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.2 bits (230), Expect = 9e-25
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDK 127
           + +R    R  D FL+ +S+  KAS+E++ +     LR     + P++LV  K DL   +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +   +            +E+        YIE S+K    NV   F   ++V+ Q
Sbjct: 126 KVTRDQG----------KEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 6e-23
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 15/176 (8%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 67
           K V VGDG  GKT  +  + +  F   YV T+           +   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
           +  LR   Y  A   ++ F  ++          W  +L      +PIVL G K D+++ K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPK 183
               +          + + L+       Y + S+K+  N +  F    + ++  P 
Sbjct: 124 VKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 1e-21
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 14/175 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
             + R    R  + F+L + +  + S+E +               V ++LVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ-NVKTVFDAAIKVVLQ 180
           +Q           +T +GE+L   +  A + ECS+ T + N+  +F    + V +
Sbjct: 122 RQV----------STEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.5 bits (205), Expect = 4e-21
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAG 64
           R  K + +GD  VGKTC+   + +  FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 65  QEDYNRL-RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQD 122
           QE + +      YR     +  + + + AS+ ++        +H  A  +P +LVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 123 LREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ---NVKTVF 171
           LR   Q            T   ++           E S+K      +V+ +F
Sbjct: 121 LRSAIQV----------PTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIF 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 8e-21
 Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 13/174 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 66
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 67  DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED 126
           +++ +    YRGA   +L FS   + S+E I   W  ++      +P  LV  K DL +D
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQ 180
                       I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 122 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 9e-21
 Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 11/165 (6%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++ + VG  A GKT +L         T      F+  +    V+   ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDK 127
              L    ++     +       +       ++ +  L        ++LV   +    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
                      + + +                 + +   +    D
Sbjct: 117 MNAAEITDKLGLHSLRHRNWY-------IQATCATSGDGLYEGLD 154

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 17/182 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISK--KWIPELRHYAP-TVPIVLVGTKQDLR 124
                      AD  +  FSL  + S++ +S+    +  LR      + + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKP 184
                         +  A+   L   +    Y E  +    NV  VF    + V+   K 
Sbjct: 120 ASSPR--------VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

Query: 185 KK 186
           ++
Sbjct: 172 QQ 173

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 6e-20
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 5   ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 64
           ++  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 65  QEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDL 123
           Q++Y+          + ++L +S+ S  S+E I       L       +PI+LVG K+DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 124 REDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
             ++            +  +G+ L +   AA ++E S+K  Q    VF   I 
Sbjct: 122 HMERVI----------SYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIIL 163

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 1e-17
 Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 13/166 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++ + +G  A GKT +L         T      F+  +         V   +WD  GQ+ 
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 68

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLRED 126
              L    Y G    +       +   +   ++    +         I++          
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN------- 121

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
           KQ L +      I    G    +           + +   +     
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLT 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 16/174 (9%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K + VG    GKT +L  ++ N           +       +  +     +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES 71

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLRED 126
                   Y   +  ++      +       ++    L H       +++   KQD++E 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDA---AIKV 177
                       I+        K         C + T + +    +     +K+
Sbjct: 132 MT-------VAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMMSRLKI 177

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.1 bits (178), Expect = 6e-17
 Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K + +G G  GK+ ++            +                 ++  ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQRS 54

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENIS----------KKWIPELRHYA-PTVPIVL 116
             +     + G    +   +L                    K +     +       I+L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 117 VGTKQDLREDK-------QYLINHPGATPITTAQGEELKKLIGAAV--------YIECSS 161
              K+DL E+K            + G+     A      +                   +
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 162 KTQQNVKTVFDAAIKVVLQ 180
              +NV+ VFDA   V+++
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 72.7 bits (177), Expect = 6e-17
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 13/181 (7%)

Query: 1   MMNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           +  + + ++ + +G    GKT +L         T   PT+  N      +    + L +W
Sbjct: 11  LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVW 66

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGT 119
           D  GQ          Y      +       K      SK+    L+        +++   
Sbjct: 67  DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 126

Query: 120 KQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVL 179
           KQD                +   +             +  S+   + +    D  I V+ 
Sbjct: 127 KQDQ-PGALSASEVSKELNLVELKDRSWS-------IVASSAIKGEGITEGLDWLIDVIK 178

Query: 180 Q 180
           +
Sbjct: 179 E 179

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 71.9 bits (175), Expect = 1e-16
 Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++ + +G    GKT +L    S           F+  S           L +WD  GQ  
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGGQRK 72

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLRED 126
                   +   D+ +       +  +E   ++    L     + VP+++   KQDL   
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
                    A+ I         +         CS+ T + V+   +   K
Sbjct: 133 AP-------ASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCK 174

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 2e-16
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLW 60
           NT  + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L 
Sbjct: 1   NT--YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58

Query: 61  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPE--LRHYAPTVPIVLVG 118
           D    +  N              L    I+  +    + +   +         +PI+LVG
Sbjct: 59  DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118

Query: 119 TKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV 178
            K DL   ++  ++   A  +           +    +IE S+  Q NVK +F+  ++ V
Sbjct: 119 NKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 167

Query: 179 LQ 180
             
Sbjct: 168 RL 169

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (175), Expect = 2e-16
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           +K + +G G  GK+  +            VPT           D  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENIS----------KKWIPELRHYA-PTVPIVL 116
             R     +      +   +L         S            +   + +       ++L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 117 VGTKQDLREDK-------QYLINHPGATPITTA-------QGEELKKLIGAAVYI-ECSS 161
              K+DL E+K        Y   + G      A          +L       +Y     +
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 162 KTQQNVKTVFDAAIKVVLQ 180
              +N++ VF A    +LQ
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 18/164 (10%), Positives = 40/164 (24%), Gaps = 4/164 (2%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + +G    GKT +L    ++   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ 128
            RL    +   +  +          ++    +               ++   +    +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 129 YLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFD 172
                  A  +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 3e-15
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++   VG    GKT  +    S  F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAP-TVPIVLVGTKQDLRED 126
           +  +     RG    +       +   E    +    L       +P++++G K+D    
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD---- 115

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIK 176
              L        +         +          S K + N+       I+
Sbjct: 116 ---LPGALDEKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQ 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 68.2 bits (165), Expect = 3e-15
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
            K V +G    GKT +L     +            +      +  + +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQ 69

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWI-PELRHYAPTVPIVLVGTKQDLR-- 124
             R+        +  +               ++            VPI+++G K D    
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 125 EDKQYLINHPGATPITTAQGEELKKLIGAAV--YIECSSKTQQNVKTVFD 172
             ++ L    G    TT +G    K + A       CS   +Q     F 
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-14
 Identities = 24/187 (12%), Positives = 53/187 (28%), Gaps = 19/187 (10%)

Query: 3   NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 62
           +  R ++ + +G    GKT +L         T    T+         V    +   +WD 
Sbjct: 1   HMTREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDL 56

Query: 63  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQ 121
            G           Y   D  +       +        + +  L         +V+   KQ
Sbjct: 57  GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 116

Query: 122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQP 181
           D+ +          ++ +  + G    K        + S+     +    +  ++ +   
Sbjct: 117 DMEQAMT-------SSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL--- 165

Query: 182 PKPKKRK 188
              K R+
Sbjct: 166 ---KSRQ 169

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 5e-14
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 18/183 (9%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPT-VPIVLVGTKQDLREDK 127
             L        D +++ +S+  K S+E  S+  +   R      VPI+LVG K DL   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 128 QYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVVLQPPKPKKR 187
           +           +  +G     +     +IE S+    NV+ +F+  ++ +       +R
Sbjct: 122 EV----------SVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIR-----LRR 165

Query: 188 KRK 190
             K
Sbjct: 166 DSK 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 3e-13
 Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 15/171 (8%)

Query: 8   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 67
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 68  YNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLRED 126
                   +   D  +       +   ++  ++    L         +++   KQDL   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 127 KQYLINHPGATPITTAQGEELKKLIGAAV-YIECSSKTQQNVKTVFDAAIK 176
                           +  EL  +         CS+ T +++    D  + 
Sbjct: 119 LS---------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (139), Expect = 2e-11
 Identities = 31/202 (15%), Positives = 54/202 (26%), Gaps = 33/202 (16%)

Query: 6   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 65
           R +K + +G G  GK+  L             PT   +       +   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 66  EDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA-----------PTVPI 114
               +     +      L   S           ++                      V I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 115 VLVGTKQDLREDK-------QYLINHPGATPITTAQGEELKKLIGAA--------VYI-E 158
           +L   K DL E+K        Y +   G         + L +             +Y   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 159 CSSKTQQNVKTVFDAAIKVVLQ 180
            ++   +N++ VF      +L 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 11  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 70
           + VG    GKT + +   +  +  D   ++ D+ +   V +    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 71  LRPLSY-RGADVFLLAFSLISKASYENISKKWIPELRHYAPTV----PIVLVGTKQDL-- 123
                +   A   +      +         +++ ++   +  +     +++   KQD+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 124 ----REDKQYL---INHPGATPITTAQGEE-----------------LKKLIGAAVYIEC 159
               +  +Q L   +N    T        +                   +L     ++EC
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 182

Query: 160 SSKTQQNVKTVFD 172
           S+K  +      D
Sbjct: 183 SAKGGRGDTGSAD 195

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 18/130 (13%)

Query: 9   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 68
           + + +G G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 69  NRLRPLSYRGADVFLLAFSLISKASYENISKK----------WIPELRHYAP-TVPIVLV 117
            R     +      +   +  S         +          +     +    T+ ++L 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 118 GTKQDLREDK 127
             KQDL  +K
Sbjct: 121 LNKQDLLAEK 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.67
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.61
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.45
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.23
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.18
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.0
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.97
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.86
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.68
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.42
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.29
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.22
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.09
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.02
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.9
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.87
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.86
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.71
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.68
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.64
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.63
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.56
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.56
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.54
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.5
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.47
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.45
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.4
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.38
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.37
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.34
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.33
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.3
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.27
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.21
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.2
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.19
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.19
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.19
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.18
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.17
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.16
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.15
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.15
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.12
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.11
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.11
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.08
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.07
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.07
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.06
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.03
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.02
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.01
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.01
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.93
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.86
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.83
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.82
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.79
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.78
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.76
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.69
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.69
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.67
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.63
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.6
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.58
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.56
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.43
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.37
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.36
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.36
d1okkd2	207	GTPase domain of the signal recognition particle r	96.33
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.32
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.3
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.25
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.25
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.2
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.2
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.13
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.05
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.98
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.98
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.9
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.9
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.84
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.82
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.79
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.75
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.7
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.68
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.47
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.47
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.37
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.35
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.33
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.32
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.28
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.24
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.21
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.18
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.16
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.13
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.96
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.95
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.94
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.91
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.85
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.59
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.59
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.58
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.47
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.45
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.4
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.24
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.09
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.79
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.77
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.58
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.54
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.76
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.7
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.26
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.44
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.4
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.28
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.09
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.19
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.08
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.96
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.85
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.78
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.26
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.18
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	88.0
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.15
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.14
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.11
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.07
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	87.01
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.97
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.56
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.81
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.26
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.6
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.52
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.18
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	80.92
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.91

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=241.64  Aligned_cols=188  Identities=54%  Similarity=1.005  Sum_probs=164.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|..+.|..++.+|....+......++..+.+++||++|+++|...+..+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            46899999999999999999999999999999998888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||+++++||+.+...|...+....++.|+++|+||+|+.+.....  ......+.+..++++++++.++..+|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            999999999999667888888877899999999999998654321  223345568999999999998877999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCcccccCCCCCcccC
Q 029177          164 QQNVKTVFDAAIKVVLQPPKPKKRKRKARPCIFL  197 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~~~~~~~~k~~~c~~~  197 (197)
                      |+|++++|+.+++.++++.++    +++++|+||
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~~----k~~~~C~i~  191 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPEP----KKSRRCVLL  191 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCST----TCCCSCCCC
T ss_pred             CcCHHHHHHHHHHHHhcCcCC----CCCCCCeEC
Confidence            999999999999998877554    344457765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=235.93  Aligned_cols=181  Identities=55%  Similarity=1.002  Sum_probs=160.5

Q ss_pred             CCCC--cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCC
Q 029177            1 MMNT--ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG   78 (197)
Q Consensus         1 ~~~~--~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   78 (197)
                      |.+.  ...+||+++|++|||||||+++|..+.|...+.+|..+.+...+..++..+.+.+||++|++.+...+..++++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            4444  46899999999999999999999999999999999877777778888999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|++++|||+++++||+.....|...++...++.|+++|+||+|+.++....  ......+.++.+++.+++++++..+|
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            9999999999999999988778888888888899999999999998755332  22344567899999999999997799


Q ss_pred             EEecccCCCCHHHHHHHHHHHHcCC
Q 029177          157 IECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++|||++|+|++++|+.++++++.+
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHcCC
Confidence            9999999999999999999988653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=229.33  Aligned_cols=174  Identities=51%  Similarity=0.906  Sum_probs=154.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      ..||+|+|++|||||||+++|..+.+.+.+.+|..+.+.....+++..+.+++||++|++.+...++.+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            46999999999999999999999999999999888777777888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |+++++||+.....|...+....+++|+++|+||+|+.+.+...  ......+.+..+++++++++++..+|++|||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999998777888888887899999999999997654321  1123345688999999999999889999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|+.+++.+++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-39  Score=227.60  Aligned_cols=179  Identities=64%  Similarity=1.075  Sum_probs=159.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +++.+||+|+|++|||||||+++|..+.|...+.+|..+.+...+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999999999988777888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||+++++||+.+...|...++.+.+++|+++|+||+|+.+++...  ......+.....++..+++.++..+|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            99999999999999667888888877899999999999987654321  1223445577889999999999889999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++|+|++++|+.+++.++.++
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-39  Score=223.58  Aligned_cols=163  Identities=29%  Similarity=0.455  Sum_probs=148.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+|+|++|||||||+++|.++.+...+.+|....+...+.+++..+.+.+||++|.+.+..++..+++++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            46789999999999999999999999999888999877777888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           85 AFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      |||++++++++.+ ..|...+....  +++|+++|+||+|+...+.          ++.+++++++++++. +|+++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999999 77776665543  5799999999999977654          889999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029177          163 TQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~  179 (197)
                      +|+|++++|..+++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-39  Score=226.23  Aligned_cols=165  Identities=30%  Similarity=0.539  Sum_probs=149.3

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +.+.+||+++|++|||||||+++|..+.+...+.++..+.+...+.+++..+.+.+||++|++++...+..+++++|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            45679999999999999999999999999999999887778888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++.|++.+ ..|...+.+.  .++.|+++||||+|+.+.+.          +..+++..+++.++. +|++|||
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  150 (173)
T d2fn4a1          83 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  150 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             eecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEeC
Confidence            99999999999999 6776666543  36899999999999987654          788999999999997 8999999


Q ss_pred             cCCCCHHHHHHHHHHHHcC
Q 029177          162 KTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++|+|++++|+++++.+.+
T Consensus       151 k~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999998844

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-39  Score=223.47  Aligned_cols=161  Identities=35%  Similarity=0.548  Sum_probs=148.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      -+||+++|++|||||||+++|.++.+...+.+|.. +.+......++..+.+.+||++|++++...+..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            37999999999999999999999999988888874 56677778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ||++++++++.+ ..|++.+.+..+++|+++||||+|+.+.+.          +..++++++++++++ +++++||++|+
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999998 889999888878999999999999987654          888999999999998 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|++|++.++
T Consensus       150 ~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         150 NVSEVFKYLAEKHL  163 (164)
T ss_dssp             SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-39  Score=225.14  Aligned_cols=161  Identities=22%  Similarity=0.382  Sum_probs=131.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|.+..+. .+.++....+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            489999999999999999999987653 3445556677778889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++++++.+ ..|...+....  +++|+++||||+|+.+.+.          ++..+++++++.+++ +++++||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999999 77888776654  5789999999999987654          888999999999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|.++++.+..
T Consensus       148 ~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRL  163 (168)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999987754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.2e-38  Score=223.12  Aligned_cols=162  Identities=31%  Similarity=0.567  Sum_probs=145.4

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+|+|++|||||||+++|..+.|...+.+|....+...+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   83 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence            58999999999999999999999999999999988888888889999999999999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |++++++++.+ ..|++.+.+..  +++|+++|+||+|+.+.+.          ++.+++.++++.++. +++++||++|
T Consensus        84 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g  151 (168)
T d1u8za_          84 SITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKTR  151 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTTC
T ss_pred             eccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCCC
Confidence            99999999999 78887776543  6899999999999977554          889999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|.++++.+..
T Consensus       152 ~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         152 ANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHC
Confidence            9999999999988743

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-38  Score=219.21  Aligned_cols=163  Identities=28%  Similarity=0.580  Sum_probs=139.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.|.+.+.++.. .........++..+.+++||++|++++...+..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            468999999999999999999999999999988875 4445577778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||+++++||+.+ ..|+..+.... +..|+++++||+|+...+.          ++.+++++++++++. +++++||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999999 66666555443 6789999999999987654          899999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|.+|++.+++
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=220.99  Aligned_cols=163  Identities=27%  Similarity=0.531  Sum_probs=147.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|..+.|...+.++....+...+..++..+.+.+||++|++.+...++.+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            56999999999999999999999999999999988888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||+++++|++.+ ..|...+.+.  .+++|+++||||+|+.....          +..+++..++++++..+++++||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 6666665543  36899999999999987654          7888999999987666999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|.++++.+.
T Consensus       151 g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999998774

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-38  Score=221.64  Aligned_cols=175  Identities=38%  Similarity=0.733  Sum_probs=155.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|..+.|+..+.++..+.+.....+++..+.+++||++|++.+...++.+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988777888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhh--cCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYL--INHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |+++++||+.+...|...+....+++|+++||||+|+.......  ......+.++.+++..++++.+..+|++|||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998777888888887899999999999997643221  2334456789999999999999889999999999


Q ss_pred             C-CHHHHHHHHHHHHcCC
Q 029177          165 Q-NVKTVFDAAIKVVLQP  181 (197)
Q Consensus       165 ~-~i~~~~~~i~~~~~~~  181 (197)
                      + |++++|+.+++.++++
T Consensus       162 ~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            8 5999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=223.05  Aligned_cols=161  Identities=27%  Similarity=0.507  Sum_probs=144.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|.++.+.+.+.+|..+.+.....+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            58999999999999999999999999999999988877778888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           87 SLISKASYENISKKWIPELRHY---APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |+++++++..+ ..|...+...   .+++|+++||||+|+.+.+.          +..++++++++.++. +++++||++
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak~  149 (171)
T d2erxa1          82 SITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAKL  149 (171)
T ss_dssp             ETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             ecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            99999999999 5665555432   36899999999999977654          888999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|+.|++.+.
T Consensus       150 ~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         150 NHNVKELFQELLNLEK  165 (171)
T ss_dssp             TBSHHHHHHHHHHTCC
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-37  Score=218.51  Aligned_cols=163  Identities=29%  Similarity=0.621  Sum_probs=145.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++.. +.....+...+..+.+++||+||++.+..+++.+++++|++++
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888774 5666777888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||+++++++... ..|...+.... ++.|+++++||+|+.+...          ++.+++.++++.++. +++++||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAKD  151 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCCC
Confidence            9999999999998 55555555444 6899999999999987654          888999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|+++++.+.+
T Consensus       152 g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         152 NINVKQTFERLVDVICE  168 (169)
T ss_dssp             TBSHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-38  Score=220.15  Aligned_cols=163  Identities=31%  Similarity=0.598  Sum_probs=144.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||+||++.+...++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            46899999999999999999999999988887777 45567778889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++.+++.. ..|...+.... ...|+++|+||+|+.+...          +..++++++++.++. ++++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAkt  151 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKE  151 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccCC
Confidence            9999999999999 55655555444 6799999999999977654          888999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|.++++.++.
T Consensus       152 g~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-38  Score=219.41  Aligned_cols=162  Identities=33%  Similarity=0.552  Sum_probs=147.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|.++.+.+.+.++..+.+...+..++..+.+.+||++|++.+...++.+++++|++++||
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~   83 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY   83 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence            48999999999999999999999999989989887777888889999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |+++++||+.+ ..|...+.+..  .++|+++++||+|+.+.+.          ++.+++.++++.+++ +++++||+++
T Consensus        84 d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak~~  151 (169)
T d1x1ra1          84 SVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAKDP  151 (169)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCSSS
T ss_pred             ccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCCCC
Confidence            99999999999 77877765543  5899999999999987654          889999999999998 8999999998


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 029177          165 Q-NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~-~i~~~~~~i~~~~~~  180 (197)
                      . ||+++|..+++.+.+
T Consensus       152 ~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         152 PLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            6 999999999998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-38  Score=220.05  Aligned_cols=161  Identities=30%  Similarity=0.577  Sum_probs=146.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++..+.+.....+++..+.+++||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            56999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.++..+ ..|...+....  +++|+++||||+|+...+.          +..+++..+++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 66766665433  6899999999999987654          788899999999997 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      |+|++++|.++++.+
T Consensus       150 g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         150 KTMVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-38  Score=220.47  Aligned_cols=162  Identities=33%  Similarity=0.615  Sum_probs=142.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++..+.+...+.+++..+.+.+||++|+..+...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            44899999999999999999999999999999998888888889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHY--APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||.++++|++.+ ..|...+...  ....|+++|+||+|+...+.          +..+++.+++++++. ++++|||++
T Consensus        84 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (171)
T d2erya1          84 FSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAKI  151 (171)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             eccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCCC
Confidence            999999999999 6676655433  25799999999999976554          888999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|.++++.+.
T Consensus       152 ~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         152 RMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999999874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=215.83  Aligned_cols=161  Identities=30%  Similarity=0.592  Sum_probs=143.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+|+|++|||||||+++|.++.+...+.++.. +.......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999888887664 5556677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||+++++|+... ..|...+.... +..|+++++||+|+.....          +..+++.++++.++. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sakt  150 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKT  150 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 56666665544 6899999999999977654          788899999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      |+|++++|.++++.+
T Consensus       151 g~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         151 GENVEDAFLEAAKKI  165 (166)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-37  Score=214.41  Aligned_cols=162  Identities=24%  Similarity=0.547  Sum_probs=144.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      .+.+||+++|++|||||||+++|..+.|.+.+.++.... .......++....+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            367999999999999999999999999999988887544 4556667888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+.          +..++++++++.+++ +++++||+
T Consensus        82 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk  149 (167)
T d1z0ja1          82 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK  149 (167)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            99999999999999 66666665554 6899999999999977654          888999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029177          163 TQQNVKTVFDAAIKVV  178 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~  178 (197)
                      +|+|++++|.++++.+
T Consensus       150 ~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         150 NAININELFIEISRRI  165 (167)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999999876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-38  Score=218.71  Aligned_cols=161  Identities=27%  Similarity=0.485  Sum_probs=140.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|..+.|.+.+.||....+...+..++..+.+++||++|++.+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            389999999999999999999999999999999877778888889999999999999998764 4456788999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh--hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           87 SLISKASYENISKKWIPELRH--YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      |+++++++..+ ..|......  ..++.|+++||||+|+.+.+.          ++.+++++++++++. +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999999 555444332  236899999999999977554          899999999999997 8999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 029177          165 Q-NVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~-~i~~~~~~i~~~~~~  180 (197)
                      + ||+++|..+++.+.+
T Consensus       149 ~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         149 EGNITEIFYELCREVRR  165 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            8 599999999988753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=214.01  Aligned_cols=160  Identities=31%  Similarity=0.562  Sum_probs=142.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      |||+++|++|||||||+++|.++.+...+.++.. .........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999999988888874 555566677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |++++.+++.+ ..|...+... .++.|+++|+||+|+.+.+.          +..+++.++++.++. ++++|||++|+
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999999 5565555544 47899999999999987654          788899999999998 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029177          166 NVKTVFDAAIKVVL  179 (197)
Q Consensus       166 ~i~~~~~~i~~~~~  179 (197)
                      |++++|.+|++++.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999999875

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=216.82  Aligned_cols=168  Identities=27%  Similarity=0.545  Sum_probs=146.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+|+|++|||||||+++|.++.+...+.++.... ....+.+++..+.+.+||+||++++..++..+++++|+++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            457999999999999999999999999998888887544 4567788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRH-YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||+++++++... ..|...+.. ...+.|+++|+||+|+.+...          +..++...++...+. +++++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999999 445454544 447899999999999987654          888999999999997 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCCc
Q 029177          163 TQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +|+|++++|+++++.+......
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cCccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999887654433

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=212.28  Aligned_cols=162  Identities=30%  Similarity=0.557  Sum_probs=143.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|..+.+.+.+.++.... ........+..+.+.+||++|++.+...+..+++++|+++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            6899999999999999999999999988888887444 456667788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRH-YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||++++++++.. ..|...+.+ ..+++|+++|+||+|+.+.+.          ++.++++++++..+. +++++||++|
T Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~g  153 (170)
T d1r2qa_          86 YDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTS  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCCC
Confidence            999999999999 555555544 447899999999999987654          889999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|.+|++.+.+
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999987754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=214.14  Aligned_cols=162  Identities=36%  Similarity=0.595  Sum_probs=147.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.++.+...+.++....+...+...+..+.+.+||++|++.+...++.+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            45899999999999999999999999999888888887777888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||++++.+++.+ ..|...+.+..  +++|+++|+||+|+...           .+..+++.++++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~-~~~e~Sak~  148 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR-----------TVESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCC-----------CSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEecccccccc-----------cccHHHHHHHHHHhCC-eEEEEcCCC
Confidence            999999999999 88888877654  57999999999998653           2678899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|+++++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-38  Score=220.86  Aligned_cols=162  Identities=28%  Similarity=0.476  Sum_probs=137.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|..+.+...+.+|.. +.....+..++..+.+.+||++|+..+...+..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999888888874 55566677788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           86 FSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      ||+++++||+.+ ..|+..+....+++|+++||||+|+.....            .+++..++...+. +++++||++|+
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999999 778887777778999999999999976432            2345677888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 029177          166 NVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       166 ~i~~~~~~i~~~~~~~~  182 (197)
                      |++++|.+|++.++..+
T Consensus       149 ~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TTTHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHccCC
Confidence            99999999999887544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=213.93  Aligned_cols=163  Identities=29%  Similarity=0.533  Sum_probs=143.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+++|++|||||||+++|..+.+.+.+.++.... ....+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            46899999999999999999999999988888887444 45567778889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||.++++++..+ ..|...+.... +++|+++|+||+|+.....          ...+.+.++++.++. +++++||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  151 (174)
T d2bmea1          84 VYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSALT  151 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCCC
Confidence            9999999999999 56666555544 6899999999999876554          788888999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|.++++.+.+
T Consensus       152 ~~gi~e~f~~l~~~i~~  168 (174)
T d2bmea1         152 GENVEEAFVQCARKILN  168 (174)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=213.63  Aligned_cols=164  Identities=33%  Similarity=0.588  Sum_probs=142.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      +..+||+++|++|||||||+++|.++.+...+.++. .......+..++..+.+.+||++|++.|...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            356899999999999999999999999988877766 4555677788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||.++++|+... ..|+..+..+. +++|+++||||+|+.+.+.          ...+....+....+. +++++||+
T Consensus        82 ~v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  149 (175)
T d2f9la1          82 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  149 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecC
Confidence            99999999999999 67777776665 6799999999999987654          667777888888886 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029177          163 TQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~~  180 (197)
                      +|+|++++|+++++.+.+
T Consensus       150 ~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         150 DSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=208.70  Aligned_cols=163  Identities=33%  Similarity=0.502  Sum_probs=133.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+||+++|++|||||||+++|.++.+...+.+++  .+.....+..++..+.+++|||||++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            46899999999999999999999998866654443  3555667788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      +|||+++++++......|........+..|+++|+||+|+.+...          +..+++.++++.++. +++++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  153 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKT  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999995555444454446889999999999977654          888999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029177          164 QQNVKTVFDAAIKVVL  179 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~  179 (197)
                      |+|++++|+++++.+.
T Consensus       154 g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         154 GLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHcC
Confidence            9999999999998774

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=211.15  Aligned_cols=163  Identities=29%  Similarity=0.588  Sum_probs=140.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      ..+||+|+|++|||||||+++|.++.+...+.++. ...+.......+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            35899999999999999999999999988877766 44555666778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||++++++++.+ ..|...+.+.. +++|+++|+||+|+...+.          +..+++..+++.++. +++++||++
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~t  149 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKT  149 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 56666565554 6899999999999977654          788899999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029177          164 QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~  180 (197)
                      |+|++++|.++++.+.+
T Consensus       150 g~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-36  Score=211.92  Aligned_cols=163  Identities=29%  Similarity=0.598  Sum_probs=114.9

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   83 (197)
                      ++.+||+++|++|||||||+++|.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...++.+++.+|+++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            3569999999999999999999999988877777764 555677888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEeccc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSK  162 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  162 (197)
                      +|||++++.+++.+ ..|...+.... ++.|+++|+||.|+.....          ...+++..++...+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999999 56666665444 7899999999999977554          777888999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029177          163 TQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       163 ~~~~i~~~~~~i~~~~~  179 (197)
                      +|+|++++|+++++.+.
T Consensus       152 ~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         152 ANINVENAFFTLARDIK  168 (173)
T ss_dssp             --CCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999999773

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-36  Score=211.80  Aligned_cols=165  Identities=33%  Similarity=0.569  Sum_probs=128.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeE-EEE-ECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+||+++|++|||||||+++|.++.+...+.++....... ... .+.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            6899999999999999999999999988887776443333 222 24455788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEe
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIEC  159 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (197)
                      +||++++.|++.+ ..|++.+....     +++|+++++||+|+.+.+.         .++.++++++++.++..+++++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e~  151 (175)
T d1ky3a_          82 VYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLT  151 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEEE
T ss_pred             Eeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEEE
Confidence            9999999999998 78887775432     4789999999999976543         3678899999999987799999


Q ss_pred             cccCCCCHHHHHHHHHHHHcCC
Q 029177          160 SSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ||++|+|++++|+++++.++++
T Consensus       152 SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         152 SAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999987643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-35  Score=206.33  Aligned_cols=163  Identities=32%  Similarity=0.581  Sum_probs=143.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee-eeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|.++.+.+.+.++... .....+..++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            489999999999999999999999999998888754 4466788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRH-YAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||++++.+++.+ ..|...... .....|+++++||+|+.+..       ..+.+..+++.++++..++ +++++||++|
T Consensus        83 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~-------~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g  153 (170)
T d1ek0a_          83 YDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKTG  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTTC
T ss_pred             EeCCcccchhhh-hhhhhhhccccccccceeeeeccccccccc-------chhhhhHHHHHHHHHHcCC-EEEEecCCCC
Confidence            999999999999 555554444 44678999999999986542       2345899999999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029177          165 QNVKTVFDAAIKVV  178 (197)
Q Consensus       165 ~~i~~~~~~i~~~~  178 (197)
                      +|++++|..|++.+
T Consensus       154 ~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         154 ENVNDVFLGIGEKI  167 (170)
T ss_dssp             TTHHHHHHHHHTTS
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=207.09  Aligned_cols=165  Identities=35%  Similarity=0.626  Sum_probs=141.5

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ++..+||+|+|++|||||||+++|..+.+...+.++.. .........++..+.+.+||++|+..+...+...+..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999999988888774 44466677889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +++||.+++.|++.+ ..|...+....     +++|+++|+||+|+.+.           .+..+++++++++++..+++
T Consensus        83 i~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-----------~v~~~~~~~~~~~~~~~~~~  150 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-----------QVSTEEAQAWCRDNGDYPYF  150 (174)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-----------SSCHHHHHHHHHHTTCCCEE
T ss_pred             EEEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhc-----------cCcHHHHHHHHHHcCCCeEE
Confidence            999999999999998 77877665432     47899999999999652           38889999999998766999


Q ss_pred             EecccCCCCHHHHHHHHHHHHcC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ++||++|+|++++|+++++.++.
T Consensus       151 e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         151 ETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEcCCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=207.75  Aligned_cols=162  Identities=24%  Similarity=0.451  Sum_probs=135.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCce-eeeeeEEEEECCeEEEEEEEecCC---CcCcccccccCcCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAG---QEDYNRLRPLSYRGAD   80 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~~   80 (197)
                      ..+||+++|++|||||||+++|.+..+... +.+++ .+.+...+.+++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            479999999999999999999998765433 23333 566777888999999999999765   4444  4567889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           81 VFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++++|||++++++++.+ ..|...+....  +++|+++|+||+|+.+.+.          ++.+++++++..+++ ++++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999999 67777666543  6899999999999987654          888999999999998 8999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCC
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +||++|+|++++|.++++.+..+
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999987543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-35  Score=205.19  Aligned_cols=163  Identities=29%  Similarity=0.604  Sum_probs=145.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|.++.+...+.++.. ......+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888877764 44456678899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           86 FSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      ||+++++++... ..|+..+.+..  ...|+++++||.|....           .+..+++.++++.++. +++++||++
T Consensus        87 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~-----------~v~~~~~~~~~~~~~~-~~~e~Sa~t  153 (177)
T d1x3sa1          87 YDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-----------EVDRNEGLKFARKHSM-LFIEASAKT  153 (177)
T ss_dssp             EETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-----------CSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EECCCccccccc-hhhhhhhcccccccceeeEEEeeccccccc-----------cccHHHHHHHHHHCCC-EEEEEeCCC
Confidence            999999999998 77888877654  46899999999997653           3788899999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029177          164 QQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~~~~~  182 (197)
                      |+|++++|+++++.+++.+
T Consensus       154 g~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         154 CDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTSG
T ss_pred             CCCHHHHHHHHHHHHccCc
Confidence            9999999999999988664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-35  Score=205.60  Aligned_cols=161  Identities=32%  Similarity=0.638  Sum_probs=136.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+++|++|||||||+++|.++.+.+.+.++.. +.....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999988888885 44567788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      ||.+++++++.+ ..|........ ...|++++++|.|+....           ...+++.+++.+++. +++++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999998 55544444444 678899999999986643           678899999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|+++++.+.+
T Consensus       149 ~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988743

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=212.36  Aligned_cols=162  Identities=36%  Similarity=0.607  Sum_probs=139.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEEC----------CeEEEEEEEecCCCcCccccccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~   74 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++.... ....+.++          ...+.+++||++|++.|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            46899999999999999999999999988777776433 34444433          23478999999999999999999


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcC
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|++++|||++++.+++.+ ..|...+..+.  +..|+++|+||+|+.+.+.          ++.+++.+++++++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHcC
Confidence            99999999999999999999999 77877666543  5789999999999987654          89999999999999


Q ss_pred             CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          153 AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       153 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      . +++++||++|+|++++|+++++.+.
T Consensus       153 ~-~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         153 I-PYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             C-CEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             C-EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7 8999999999999999999999885

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-34  Score=205.82  Aligned_cols=165  Identities=30%  Similarity=0.548  Sum_probs=143.2

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      .+||+|+|.+|||||||+++|.++.+...+.+|. .+.........+..+.+.+||++|+..+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            4899999999999999999999999999988887 445566777788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHYA-----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                      ||.+++.++..+ ..|+..+....     .++|+++|+||+|+.+..           +..++...++...+..++++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999998 78887665542     368999999999986532           6777778887776666999999


Q ss_pred             ccCCCCHHHHHHHHHHHHcCCCC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQPPK  183 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~~~~  183 (197)
                      |++|+|++++|+++++.+.+.+.
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhccc
Confidence            99999999999999998876544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-34  Score=200.78  Aligned_cols=158  Identities=28%  Similarity=0.546  Sum_probs=137.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEEEEECCeEEEEEEEecCCCcCccc-ccccCcCCCcEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFL   83 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i   83 (197)
                      +.+||+++|++|||||||+++|..+.+...+.++.... ......+......+.+||++|...+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            46999999999999999999999999988888877544 356677888899999999999877654 4667889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           84 LAFSLISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      +|||++++++++.+ ..|+..+.++.  +++|+++||||+|+.+.+.          ++.+++.+++++++. +++++||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 77877776654  5899999999999987654          899999999999998 8999999


Q ss_pred             cC---CCCHHHHHHHHH
Q 029177          162 KT---QQNVKTVFDAAI  175 (197)
Q Consensus       162 ~~---~~~i~~~~~~i~  175 (197)
                      ++   ++||+++|.+|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   569999998873

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=201.38  Aligned_cols=162  Identities=20%  Similarity=0.310  Sum_probs=136.6

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      ..+||+++|++|||||||+++|.++.+.. +.++....+...+.+++..+.+++||++|+..+.     +++.+|++++|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            46999999999999999999999998854 4566667777788899999999999999987653     67889999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecc
Q 029177           86 FSLISKASYENISKKWIPELRHYA----PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSS  161 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (197)
                      ||+++++||+.+ ..|...+....    +++|+++|+||.|+....        .+.+..+++..++.+....+|++|||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999998 77877765443    578999999999986532        24578889999987776669999999


Q ss_pred             cCCCCHHHHHHHHHHHHcCCC
Q 029177          162 KTQQNVKTVFDAAIKVVLQPP  182 (197)
Q Consensus       162 ~~~~~i~~~~~~i~~~~~~~~  182 (197)
                      ++|.|++++|..+++.+...+
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhh
Confidence            999999999999999886544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=6.4e-33  Score=193.00  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=124.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   86 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   86 (197)
                      .+||+++|++|||||||+++|.++.+...+.+|....+ ..+..++  +.+.+||+||++.+...+..++..++++++||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   78 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   78 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee-eeeeeee--EEEEEeeccccccccccccccccccchhhccc
Confidence            58999999999999999999999999888888764333 2344555  78889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCC
Q 029177           87 SLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQ  165 (197)
Q Consensus        87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  165 (197)
                      |+++++++......|...+.... +++|+++|+||+|+.+....       +.+.......++...+ .+++++||++|+
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-------~~i~~~~~~~~~~~~~-~~~~e~Sa~~g~  150 (164)
T d1zd9a1          79 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-------KELIEKMNLSAIQDRE-ICCYSISCKEKD  150 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSC-EEEEECCTTTCT
T ss_pred             ccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH-------HHHHHHHHHHHHHhCC-CEEEEEeCcCCc
Confidence            99999999998544444544433 68999999999998653210       0011111112222334 479999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029177          166 NVKTVFDAAIKVV  178 (197)
Q Consensus       166 ~i~~~~~~i~~~~  178 (197)
                      |++++|++|++.+
T Consensus       151 gv~e~~~~l~~~~  163 (164)
T d1zd9a1         151 NIDITLQWLIQHS  163 (164)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcc
Confidence            9999999999854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.4e-31  Score=186.23  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=123.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|.+..+ ..+.+|... ....+..++  +.+.+||+||++.++..+..+++.+++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGF-NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSE-EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEee-eeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            458999999999999999999988765 344455432 233344555  7888999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH--HH--cCCcEEEEec
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK--KL--IGAAVYIECS  160 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S  160 (197)
                      ||+++..++......|...+.... .+.|+++|+||+|+.+..            ..++.....  ..  ....++++||
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc------------CHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            999999999998666666655433 689999999999997542            222222221  11  1234789999


Q ss_pred             ccCCCCHHHHHHHHHHHHcC
Q 029177          161 SKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       161 a~~~~~i~~~~~~i~~~~~~  180 (197)
                      |++|+|++++|++|++.+.+
T Consensus       145 a~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHc
Confidence            99999999999999998754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=3.1e-31  Score=186.32  Aligned_cols=158  Identities=19%  Similarity=0.262  Sum_probs=118.8

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEE
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   82 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   82 (197)
                      ++++.+||+++|++|||||||+++|.++.+...+ ++.. .....+...+  +.+.+||++|++.++..+..+++.+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~-~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee-eeEEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            4467899999999999999999999998774222 1111 1123344444  7889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-----HHHHcCCcEE
Q 029177           83 LLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-----LKKLIGAAVY  156 (197)
Q Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  156 (197)
                      ++|||++++.++......|........ .++|+++++||+|+.+..            ......+     .+.. ...++
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~  154 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRD-RVWQI  154 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCS-SCEEE
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc------------cHHHHHHHHHHHHHHh-cCCEE
Confidence            999999999999998444444333322 589999999999997642            2222221     1222 23479


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++||++|+|++++|+|+++.
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHhc
Confidence            999999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=3e-31  Score=187.40  Aligned_cols=161  Identities=16%  Similarity=0.194  Sum_probs=117.8

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcE
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   81 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   81 (197)
                      ....+.+||+++|++|||||||+++|..+.+.. ..+|... ........+  +.+.+||++|++.++..+..++..+|+
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGF-NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTC-CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccce-EEEEEeeCC--EEEEEEecccccccchhHHhhhcccee
Confidence            356778999999999999999999998876532 2233221 122334454  788899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHH-----HHHHcCCcE
Q 029177           82 FLLAFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEE-----LKKLIGAAV  155 (197)
Q Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  155 (197)
                      +++|||++++.++......|...+.... .+.|+++|+||+|+.+.            ...++..+     .+...+ .+
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~  154 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRS-WS  154 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSC-EE
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc------------cCHHHHHHHHHHHHHhhCC-CE
Confidence            9999999999999988444444444333 57999999999999653            22222222     222333 47


Q ss_pred             EEEecccCCCCHHHHHHHHHHHHc
Q 029177          156 YIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +++|||++|+|++++|++|++.+.
T Consensus       155 ~~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         155 IVASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             EEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998873

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.8e-31  Score=186.13  Aligned_cols=162  Identities=16%  Similarity=0.186  Sum_probs=118.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+++|++|||||||+++|..+.+... .+|... .........  +.+.+||+||+..++..+..+++.++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~-~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGF-NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTE-EEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeee-eEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            5679999999999999999999998765332 122211 122233334  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccC
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKT  163 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (197)
                      |||+++.+++..+...|...+.... .+.|+++++||+|+.+....       ..+....+.+.+...+ .+++++||++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~-~~~~e~SA~t  157 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HEIQEKLGLTRIRDRN-WYVQPSCATS  157 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSC-EEEEECBTTT
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH-------HHHHHHHHHHHHHhCC-CEEEEeeCCC
Confidence            9999999999998555555554433 68999999999999753210       0011111112222234 3789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029177          164 QQNVKTVFDAAIKVV  178 (197)
Q Consensus       164 ~~~i~~~~~~i~~~~  178 (197)
                      |+|++|+|++|.+.+
T Consensus       158 g~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         158 GDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHhc
Confidence            999999999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=5.1e-30  Score=176.93  Aligned_cols=159  Identities=16%  Similarity=0.202  Sum_probs=119.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   87 (197)
                      +||+++|++|||||||+++|.++.+...+.....    .....+...+.+.+||++|...+...+..++..+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            5999999999999999999999887655443332    122334455889999999999998889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCC
Q 029177           88 LISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQN  166 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  166 (197)
                      .+++.++......+.+.+.... ...|+++++||.|+.+...       .+.+.......++...+. +++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SAktg~g  148 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGDG  148 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTBT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCCC-EEEEeECCCCCC
Confidence            9999999998444444444333 5789999999999876421       000222222233444454 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 029177          167 VKTVFDAAIKVV  178 (197)
Q Consensus       167 i~~~~~~i~~~~  178 (197)
                      ++++|++|.+.+
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=5.1e-27  Score=164.93  Aligned_cols=155  Identities=16%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc--------ccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~   77 (197)
                      -.|+|+|.+|||||||+|+|++....  .....++...........+  ..+.+||+||........        ...+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            36999999999999999999987542  2233333343344445566  577899999986543332        23467


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|++++|+|++++.+...  ..|...++....+.|+++|+||+|+...             ..+....+.+..+...++
T Consensus        84 ~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~  148 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-------------PEEAMKAYHELLPEAEPR  148 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-------------HHHHHHHHHHTSTTSEEE
T ss_pred             cccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-------------HHHHHHHHHhhcccCceE
Confidence            8999999999998766544  4667777776678999999999999653             224445666667777899


Q ss_pred             EecccCCCCHHHHHHHHHHHHc
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ++||++|+|+++++++|.+.+.
T Consensus       149 ~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         149 MLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCC
T ss_pred             EEecCCCCCHHHHHHHHHHhCC
Confidence            9999999999999999998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=161.53  Aligned_cols=158  Identities=16%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+.+||+|+|.+|||||||++++.++.+.......  ..........+  +.+.+||+++++.....+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI--GSNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS--CSSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc--ceeEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            45699999999999999999999998774322111  12223334455  788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH----HcCCcEEEEe
Q 029177           85 AFSLISKASYENISKKWIPELRHY-APTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK----LIGAAVYIEC  159 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  159 (197)
                      ++|.++..++......+....... ..+.|+++|+||+|+....            ...+......    .....+++++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  156 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQWHIQAC  156 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCEEEEEC
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC------------cHHHHHHHHHHHhhHhcCCEEEEE
Confidence            999999999988733333333222 2689999999999986542            2222222221    1123489999


Q ss_pred             cccCCCCHHHHHHHHHHHH
Q 029177          160 SSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       160 Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ||++|+|++++|++|.+++
T Consensus       157 Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         157 CALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             BTTTTBTHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=159.13  Aligned_cols=163  Identities=14%  Similarity=0.194  Sum_probs=121.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|.+|||||||+++|.++.+...+ ++.. ........++  +.+.+||.+|...+...+...+..+++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG-FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS-EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc-eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            4599999999999999999999999875432 3322 2222334455  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCC
Q 029177           86 FSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQ  164 (197)
Q Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (197)
                      +|+.+..++......+...+.... ...|+++++||.|+.....       ...+....+..++...+ .+++++||++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-------~~~i~~~~~~~~~~~~~-~~~~~~SA~~g  151 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRK-WQIFKTSATKG  151 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSC-EEEEECCTTTC
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-------HHHHHHHHHHHHHhcCC-CEEEEEeCCCC
Confidence            999999988888555555444433 6789999999999976431       00011122223333444 48999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029177          165 QNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       165 ~~i~~~~~~i~~~~~~  180 (197)
                      +|++++|++|++.+.+
T Consensus       152 ~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         152 TGLDEAMEWLVETLKS  167 (169)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999997743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.7e-26  Score=164.04  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|+.|||||||++||..+.++..+.+      ...+....  +.+++||++|++.++..+..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------EEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            468999999999999999999988766433211      22334444  7889999999999999999999999999999


Q ss_pred             EECCChhhH----------HHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhc-----CCCCCCCccHHHHHH---
Q 029177           86 FSLISKASY----------ENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLI-----NHPGATPITTAQGEE---  146 (197)
Q Consensus        86 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~-----~~~~~~~~~~~~~~~---  146 (197)
                      +|+++..++          ......|...+.... .+.|+++++||+|+........     .+.........++..   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999998765          223256666666544 6889999999999865432110     001111122222221   


Q ss_pred             --HHHH-----cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          147 --LKKL-----IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       147 --~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                        +...     .+..++++|||++++|++++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              1111     123467789999999999999999887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.6e-26  Score=162.41  Aligned_cols=169  Identities=18%  Similarity=0.122  Sum_probs=125.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||++||..+.+  .+.||.+..+ .  .+....+.+++||++|++.++..|..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~-~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE-Y--PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEE-E--EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEE-E--EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            468999999999999999999998876  3567764332 2  2333447888999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhh------cCCCCCCCccHHHHHHH
Q 029177           86 FSLISKA-----------SYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYL------INHPGATPITTAQGEEL  147 (197)
Q Consensus        86 ~d~~~~~-----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~  147 (197)
                      ||.++..           .++.. ..|...+.... ++.|+++++||+|+.+.....      ..+..........+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHH-HHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            9998864           23444 78888887665 789999999999987544211      11222222333433433


Q ss_pred             HHH---------cCCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          148 KKL---------IGAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       148 ~~~---------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      ...         ...+.++++||++|+|++++|+.+.+.+++
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            221         123457899999999999999999887763

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=150.34  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=112.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEEC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   88 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   88 (197)
                      ||+++|++|||||||+++|.++.+. ...++.... .......+  ..+.+||++|...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEe-EEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            8999999999999999999998774 344444222 22223333  6778999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHH-----------HHcCCcE
Q 029177           89 ISKASYENISKKWIPELRHYA--PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELK-----------KLIGAAV  155 (197)
Q Consensus        89 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  155 (197)
                      ++..++..... |........  .+.|+++++||.|+...            ....+..+..           ......+
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~  144 (166)
T d2qtvb1          78 ADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQRPVE  144 (166)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSC------------CCHHHHHHHHTCSSCCC---CCSSCCEE
T ss_pred             cchhhhhhhhH-HHHhhhhhhccCCceEEEEecccccccc------------CCHHHHHHHhhhhhhhHHHhhcccCCCE
Confidence            99999888844 444443333  58899999999998653            2222222111           1122347


Q ss_pred             EEEecccCCCCHHHHHHHHHH
Q 029177          156 YIECSSKTQQNVKTVFDAAIK  176 (197)
Q Consensus       156 ~~~~Sa~~~~~i~~~~~~i~~  176 (197)
                      +++|||++|+|++|+|++|.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            999999999999999999875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=9.5e-25  Score=153.54  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=112.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   84 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   84 (197)
                      .+..||+++|++|||||||+++|.++.+...+ ++... ....+..++  ..+.+||+.++..+...+.......+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHP-TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC-SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccc-ceeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            56789999999999999999999998775432 33222 123455666  566799999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH-------------
Q 029177           85 AFSLISKASYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL-------------  150 (197)
Q Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  150 (197)
                      ++|.++...+......+........ .+.|+++++||.|+...            ....+..+....             
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  154 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSLK  154 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc------------CCHHHHHHHHhhcccchhhhhhhHH
Confidence            9999999998887555544444333 68999999999998653            223332322221             


Q ss_pred             ---cCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          151 ---IGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       151 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                         ....++++|||++|+|++|+|+||.+++
T Consensus       155 ~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         155 ELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence               1124789999999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.3e-26  Score=160.21  Aligned_cols=149  Identities=20%  Similarity=0.267  Sum_probs=111.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc--------cccCcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   77 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~   77 (197)
                      +||+++|.+|||||||+|+|++....  .....++.......+...+  ..+.+||+||..+....        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999986543  2222333444444555666  56779999997654322        223467


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .+|++++++|.++..++... ..|...+.....+.|+++|+||+|+.+...          .        ..+.+..+++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~----------~--------~~~~~~~~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETL----------G--------MSEVNGHALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------E--------EEEETTEEEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHH----------H--------HHHhCCCcEE
Confidence            89999999999999887776 566666666666899999999999876432          0        1123445899


Q ss_pred             EecccCCCCHHHHHHHHHHH
Q 029177          158 ECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      ++||++|+|+++++++|.+.
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.5e-25  Score=156.91  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=112.1

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||++||.   +...+.||.+.. ...+...+  +.+++||++|++.++..+..+++.+++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~-~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIH-EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEE-EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeE-EEEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   455667776432 23344555  7888999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhh------cCCCCCCCccHHHHHHHH
Q 029177           86 FSLISKAS----------YENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYL------INHPGATPITTAQGEELK  148 (197)
Q Consensus        86 ~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~  148 (197)
                      ||.++..+          ++.....|...+.... .++|+++++||+|+.+.....      ..+.....-..+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99998643          3444344555555443 689999999999987543211      011111222334444433


Q ss_pred             HHc----------CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          149 KLI----------GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       149 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ...          ..+.++++||++++|++++|+.+.+.++
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            321          1234668999999999999999887764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=5e-25  Score=154.89  Aligned_cols=161  Identities=18%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-------ccCcCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~~   80 (197)
                      .|+++|.+|||||||+|+|++...... ...++.. .............+++||+||........       ...+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS-PNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSC-CEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCcee-eeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999987543222 2222221 12222233333567899999964322111       12357889


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           81 VFLLAFSLISKA--SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        81 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++++++|.....  +.... ..|+........+.|+++|+||+|+.....            .++..+.....+. +++.
T Consensus        82 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~------------~~~~~~~~~~~~~-~~~~  147 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA------------VKALADALAREGL-AVLP  147 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH------------HHHHHHHHHTTTS-CEEE
T ss_pred             hhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH------------HHHHHHHHHhcCC-eEEE
Confidence            999999986643  22222 233333222224689999999999976532            2333444444554 8999


Q ss_pred             ecccCCCCHHHHHHHHHHHHcCCCCc
Q 029177          159 CSSKTQQNVKTVFDAAIKVVLQPPKP  184 (197)
Q Consensus       159 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  184 (197)
                      +||++|+|++++++.|.+.+...+.+
T Consensus       148 iSA~tg~gid~L~~~i~~~l~~~~~~  173 (180)
T d1udxa2         148 VSALTGAGLPALKEALHALVRSTPPP  173 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTSCCC
T ss_pred             EEcCCCCCHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999888655443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.9e-23  Score=145.54  Aligned_cols=154  Identities=23%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc---------ccccCcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLSYR   77 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~   77 (197)
                      .|+++|++|||||||+++|++....  .....++.......+....  ..+.+||++|......         .....+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999975432  2333333333344444455  6778999999543321         1222357


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEE
Q 029177           78 GADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYI  157 (197)
Q Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .+|+++++.|.++......  ..+...+...  +.|+++|+||+|+.....            .+...++. ..+..+++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~~------------~~~~~~~~-~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREFE------------REVKPELY-SLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHHH------------HHTHHHHG-GGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhhh------------hHHHHHHH-hcCCCCeE
Confidence            8999999999887766555  4566666665  789999999999975322            12222332 33444789


Q ss_pred             EecccCCCCHHHHHHHHHHHHcCC
Q 029177          158 ECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       158 ~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      ++||++|.|+++++++|.+.+..+
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999987544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1e-22  Score=143.48  Aligned_cols=157  Identities=21%  Similarity=0.186  Sum_probs=103.9

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccc-----------
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   72 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------   72 (197)
                      ..+||+++|++|||||||+|+|++...  ...+..++.......+..++  ..+.++|+||.......+           
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            359999999999999999999998643  23334444444445566777  456799999975433221           


Q ss_pred             -ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH----
Q 029177           73 -PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL----  147 (197)
Q Consensus        73 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----  147 (197)
                       ...++.+|++++++|++.......  ..+...+...  +.|+++|+||+|+.....          ...++..+.    
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~~  150 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  150 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchh----------hhhhhHHHHHHHH
Confidence             112467899999999987655444  3455555554  789999999999875443          222222222    


Q ss_pred             HHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          148 KKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       148 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ....+..+++++||++|.|++++++.|.+.+
T Consensus       151 ~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         151 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2223456899999999999999999997654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=1.4e-23  Score=147.28  Aligned_cols=162  Identities=18%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------eeeeeEEEEECCeEEEEEEEecCCCcCcccccccCc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY   76 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~   76 (197)
                      .+.++|+++|++|+|||||+|+|++.........+.        .......+...+  ..+.++|+||+.+|.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            356899999999999999999999643221111111        111112233444  5677999999999888888888


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH---cCC
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL---IGA  153 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  153 (197)
                      ..+|++++++|+++....... ..+ ..+...  ++|+++|+||+|+.......        ...+....+...   ...
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~-~~~-~~~~~~--~~p~iiv~NKiD~~~~~~~~--------~~~~~~~~~~~~~~~~~~  148 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG-EHM-LILDHF--NIPIIVVITKSDNAGTEEIK--------RTEMIMKSILQSTHNLKN  148 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCBCEEEECTTSSCHHHHH--------HHHHHHHHHHHHSSSGGG
T ss_pred             hhccccccccccccccchhhh-hhh-hhhhhc--CCcceeccccccccCHHHHH--------HHHHHHHHHHHHhhcCCC
Confidence            999999999999987554443 222 333333  78999999999997653200        011122222222   223


Q ss_pred             cEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          154 AVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                      .+++++||++|+|++++++.|.+.+..
T Consensus       149 ~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         149 SSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            489999999999999999999987643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=8.2e-23  Score=140.63  Aligned_cols=148  Identities=20%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc--c-------cccCc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--L-------RPLSY   76 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~-------~~~~~   76 (197)
                      +||+++|.+|||||||+|+|++...  ......++.......+...+  ..+.+||+||......  .       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999997543  22233333444455566677  5677999999532211  1       11124


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEE
Q 029177           77 RGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY  156 (197)
Q Consensus        77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ..+|++++|+|++++.+.+.. . +...+    ...|+++++||.|+.+.            ...++.....  ....++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~-~-~~~~~----~~~~~i~~~~k~d~~~~------------~~~~~~~~~~--~~~~~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR-K-ILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKL--GTDRHM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-H-HHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHH--TCSTTE
T ss_pred             HhCCEEEEEEeCCCCcchhhh-h-hhhhc----ccccceeeeeeccccch------------hhhHHHHHHh--CCCCcE
Confidence            679999999999998876654 2 22222    35789999999999764            2223322221  123479


Q ss_pred             EEecccCCCCHHHHHHHHHHH
Q 029177          157 IECSSKTQQNVKTVFDAAIKV  177 (197)
Q Consensus       157 ~~~Sa~~~~~i~~~~~~i~~~  177 (197)
                      +++||++|+|+++++++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.88  E-value=1.2e-22  Score=147.68  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=104.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeee-eeEE----------------EEECCeEEEEEEEecCCCcCccccc
Q 029177           10 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSAN----------------VVVDGSTVNLGLWDTAGQEDYNRLR   72 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~D~~g~~~~~~~~   72 (197)
                      |+|+|++++|||||+++|++........+..... ....                ..++.....+.++|||||.+|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998742211111111000 0000                0112223567799999999999988


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC-----CCCc-----cHH
Q 029177           73 PLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG-----ATPI-----TTA  142 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~-----~~~~-----~~~  142 (197)
                      ...+..+|++++|+|+.+.-.....  ..+..+...  ++|+++++||+|+............     ....     ...
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            8899999999999999886555443  344555544  7899999999998764321100000     0000     001


Q ss_pred             HHHHHHHH-----------------cCCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          143 QGEELKKL-----------------IGAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       143 ~~~~~~~~-----------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ...+....                 .+..+++.+||.+|+|++++++.+...+.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111111                 12347899999999999999999887663

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.7e-22  Score=145.20  Aligned_cols=168  Identities=15%  Similarity=0.178  Sum_probs=117.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccCcCCCcEEEEE
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   85 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   85 (197)
                      +.+||+++|++|||||||+++|..+.+.    ||.+ .....+.+++  +.+++||++|++.++..|..+++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG-~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV----LTSG-IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCS-CEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCC-eEEEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            4689999999999999999999876543    4443 2233455666  7889999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccchhhhc---------------CCCC----
Q 029177           86 FSLISKA----------SYENISKKWIPELRHYA-PTVPIVLVGTKQDLREDKQYLI---------------NHPG----  135 (197)
Q Consensus        86 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~---------------~~~~----  135 (197)
                      +|.++..          ...+....|...+.... .++|++|++||+|+.+......               ....    
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9998753          34444366777776554 6899999999999876532110               0000    


Q ss_pred             -CCCccHHHHHHHH-----HHc-------CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          136 -ATPITTAQGEELK-----KLI-------GAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       136 -~~~~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                       ........+..+.     +..       .....+++||.+..+++.+|+.+.+.+++
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence             0011123332221     111       12235689999999999999887776653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.9e-22  Score=141.59  Aligned_cols=117  Identities=15%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc-cccccCcCCCcEEEEEEE
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFLLAFS   87 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~v~d   87 (197)
                      +|+++|++|||||||+++|.++.+...+ ++...........++..+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998876544 33333322222224455789999999998875 456777899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccc
Q 029177           88 LISKASY-ENISKKWIPELRHY---APTVPIVLVGTKQDLRED  126 (197)
Q Consensus        88 ~~~~~s~-~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~  126 (197)
                      +++..++ ......+...+...   ..++|++|++||+|+...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998764 44423333433322   246899999999999753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=2e-21  Score=136.53  Aligned_cols=150  Identities=16%  Similarity=0.149  Sum_probs=95.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEecCCCcCccc---------------cc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------------LR   72 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------------~~   72 (197)
                      .|+++|.+|||||||+|+|++.....+..+ ++...  ..+...+    +++||+||......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998665433333 33222  2223333    46899999532211               12


Q ss_pred             ccCcCCCcEEEEEEECCChhhHHHHH---------HHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH
Q 029177           73 PLSYRGADVFLLAFSLISKASYENIS---------KKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ  143 (197)
Q Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~---------~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      ...++.+|++++++|.+.+.......         ..+.+.+...  +.|+++|+||+|+.++..             +.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-------------~~  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-------------EV  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-------------HH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-------------HH
Confidence            22356789999999987654322220         1233334433  789999999999865432             11


Q ss_pred             HHHHHHHcC------CcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          144 GEELKKLIG------AAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       144 ~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      ...+.....      ...++++||++|+|+++++++|.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            122222221      124789999999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=3.6e-22  Score=140.64  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=98.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc----ccc---CcCCCc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL----RPL---SYRGAD   80 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----~~~---~~~~~~   80 (197)
                      +|+++|.+|||||||+|+|++... ..++.+++.........+.+. ..+++||+||.......    ...   .+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            589999999999999999987543 223334443332223333322 35779999996322111    111   234678


Q ss_pred             EEEEEEECCChhhHHHHH--HHHHHHHh---hhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-CCc
Q 029177           81 VFLLAFSLISKASYENIS--KKWIPELR---HYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-GAA  154 (197)
Q Consensus        81 ~~i~v~d~~~~~s~~~~~--~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (197)
                      .++++++....+......  ..+.....   ....++|+++|+||+|+.+..              +....+...+ ...
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~  147 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDDY  147 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSCC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccCC
Confidence            888888776554322210  11111111   112478999999999996532              2223344433 234


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHcCC
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVLQP  181 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  181 (197)
                      +++.+||++|+|++++++.|.+.+...
T Consensus       148 ~v~~iSA~~g~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         148 PVFPISAVTREGLRELLFEVANQLENT  174 (185)
T ss_dssp             CBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence            789999999999999999999987543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=9e-21  Score=134.48  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCcc-------------cccc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYN-------------RLRP   73 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------~~~~   73 (197)
                      -+|+|+|.+|||||||+|+|++........... .+..........   .+.+.|++|.....             ....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            389999999999999999999754321111111 111111112222   23356666532211             1112


Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH---H
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK---L  150 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  150 (197)
                      .....+|++++++|++++..-..  ..+++.+...  ++|+++|+||+|+.....          . .+....+.+   .
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~----------~-~~~~~~~~~~l~~  165 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK----------W-DKHAKVVRQTLNI  165 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG----------H-HHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH----------H-HHHHHHHHHHhcc
Confidence            23457899999999987655444  3555666654  789999999999865432          1 122222222   2


Q ss_pred             cCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          151 IGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       151 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      .+..+++.+||++|+|+++++++|.+.+
T Consensus       166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         166 DPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3455899999999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=2e-21  Score=137.99  Aligned_cols=165  Identities=16%  Similarity=0.075  Sum_probs=105.9

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcCCCCCCC---C-C-ceeeee-eEEEE-------------------ECCeEEEEE
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDY---V-P-TVFDNF-SANVV-------------------VDGSTVNLG   58 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~---~-~-~~~~~~-~~~~~-------------------~~~~~~~~~   58 (197)
                      +...++|+++|+.++|||||+++|++.......   . . +....+ .....                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            345689999999999999999999863221100   0 0 000000 00000                   011235688


Q ss_pred             EEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCC
Q 029177           59 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATP  138 (197)
Q Consensus        59 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  138 (197)
                      ++|+|||.+|.......+..+|++++++|+.+....... ...+..+... ...+++++.||+|+.+....        .
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~--------~  151 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEKA--------L  151 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------H
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHHH--------H
Confidence            999999999988888888999999999999886422222 2222333333 12457888999999765420        0


Q ss_pred             ccHHHHHHHHHHcC--CcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          139 ITTAQGEELKKLIG--AAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       139 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ...+...++....+  .++++++||++|+|++++++.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         152 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            11233334443332  35799999999999999999998765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=6.8e-21  Score=136.18  Aligned_cols=163  Identities=15%  Similarity=0.093  Sum_probs=103.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCC---CCCC--ce-eeeeeEEEEE------------------------CCeEEE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVP--TV-FDNFSANVVV------------------------DGSTVN   56 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~---~~~~--~~-~~~~~~~~~~------------------------~~~~~~   56 (197)
                      .++|+++|+.++|||||+++|++..-..   ....  +. ..........                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            4899999999999999999998632110   0000  00 0000000000                        112346


Q ss_pred             EEEEecCCCcCcccccccCcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCC
Q 029177           57 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPG  135 (197)
Q Consensus        57 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  135 (197)
                      +.+.|+|||.+|....-..+..+|++++|+|+.+.- ..... ..| ..+... .-.|+|++.||+|+.+.....     
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~-e~~-~~~~~~-~i~~iIV~vNK~Dl~~~~~~~-----  159 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHF-VALGII-GVKNLIIVQNKVDVVSKEEAL-----  159 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHH-HHH-HHHHHT-TCCCEEEEEECGGGSCHHHHH-----
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHH-HHH-HHHHHc-CCceeeeccccCCCccchHHH-----
Confidence            889999999999887777888999999999998863 22221 222 233322 134889999999997654300     


Q ss_pred             CCCccHHHHHHHHHHc--CCcEEEEecccCCCCHHHHHHHHHHHHcC
Q 029177          136 ATPITTAQGEELKKLI--GAAVYIECSSKTQQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  180 (197)
                         ........+....  ...|++.+||++|.|++++++.|..++..
T Consensus       160 ---~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         160 ---SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             ---HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ---HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence               1112222232222  23579999999999999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=6.2e-21  Score=135.03  Aligned_cols=162  Identities=18%  Similarity=0.160  Sum_probs=107.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-------CC---------CCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN-------TF---------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR   70 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   70 (197)
                      .++|+++|+.++|||||+++|++.       .+         ..+.... .+.......+......+.++|+||+.+|..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rg-iTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG-ITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT-EEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCC-ccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            489999999999999999999741       00         0010000 111122223333336777999999999988


Q ss_pred             ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH
Q 029177           71 LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL  150 (197)
Q Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .....+..+|++++|+|+.+...-+..  ..+..+... ...|+|++.||+|+..+....       .....+...+...
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~-------~~i~~~i~~~l~~  151 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSEMV-------ELVELEIRELLTE  151 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHHHH-------HHHHHHHHHHHHH
Confidence            888888999999999999987654443  222333332 235799999999997543200       0122345555555


Q ss_pred             cCC----cEEEEecccCC----------CCHHHHHHHHHHHHc
Q 029177          151 IGA----AVYIECSSKTQ----------QNVKTVFDAAIKVVL  179 (197)
Q Consensus       151 ~~~----~~~~~~Sa~~~----------~~i~~~~~~i~~~~~  179 (197)
                      ++.    .|++.+||++|          +++.++++.+...+.
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            553    57999999998          588999988877653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1e-19  Score=127.05  Aligned_cols=157  Identities=17%  Similarity=0.095  Sum_probs=105.8

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCce-eeeeeEEEEECCeEEEEEEEecCCCcCc---------cccccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~   74 (197)
                      ..=.|+++|.+|||||||+|+|++.... .+..+.+ ..........+.  ..+.+||++|....         ......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            3446899999999999999999986432 2222333 233333334444  35557888885321         222333


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCc
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAA  154 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ....+++++++.|.++......   .+...+..  ...|.++++||.|...+..          ........+..+++..
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~~  146 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFL  146 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCS
T ss_pred             chhhcceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCCC
Confidence            4566788888888776443322   22233333  3678999999999877643          3345566777788888


Q ss_pred             EEEEecccCCCCHHHHHHHHHHHHc
Q 029177          155 VYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       155 ~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      +++++||++|+|++++++.|.+.+.
T Consensus       147 ~~~~vSA~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         147 DIVPISAETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             EEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             CEEEEeCcCCCCHHHHHHHHHHhCC
Confidence            9999999999999999999988763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=2.7e-19  Score=127.47  Aligned_cols=144  Identities=17%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC-----C---CCC----CCC------CceeeeeeEEEEECCeEEEEEEEecCCCcCc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN-----T---FPT----DYV------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY   68 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~-----~---~~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   68 (197)
                      .++|+++|++++|||||+++|+..     .   ...    ++.      ..+.+.....+..++  ..+.|+|||||.+|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            489999999999999999999731     0   000    000      111112222344555  56679999999999


Q ss_pred             ccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH
Q 029177           69 NRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQYLINHPGATPITTAQGEEL  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      .......+..+|++++|+|+.+....... ..| ..+...  ++| ++++.||+|+.+....       .....++...+
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~-~~~~~~--gi~~iiv~iNK~D~~~~~~~-------~~~~~~~i~~~  149 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTR-EHI-LLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEVRDL  149 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHH-HHHHHc--CCCeEEEEEEecccCCCHHH-------HHHHHHHHHHH
Confidence            98888888999999999999988776664 333 444433  666 7788999998653210       00112334444


Q ss_pred             HHHcC----CcEEEEecccC
Q 029177          148 KKLIG----AAVYIECSSKT  163 (197)
Q Consensus       148 ~~~~~----~~~~~~~Sa~~  163 (197)
                      ...++    ..+++..|+..
T Consensus       150 l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         150 LNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHTTSCTTTSCEEECCHHH
T ss_pred             HHhcCCCcccceeeeeechh
Confidence            44443    25688888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=9.9e-18  Score=120.55  Aligned_cols=152  Identities=15%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc--CCCCCC------------------------------CCCcee--eeeeEEEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------------YVPTVF--DNFSANVVV   50 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~--~~~~~~------------------------------~~~~~~--~~~~~~~~~   50 (197)
                      ...+||+++|+.++|||||+.+|+.  +.....                              +.....  ..-......
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            4578999999999999999999974  221110                              000000  000111222


Q ss_pred             CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccchhh
Q 029177           51 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVP-IVLVGTKQDLREDKQY  129 (197)
Q Consensus        51 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~  129 (197)
                      ++  ..+.++|+|||.+|.......+..+|++++|+|+.+...-... .. +..+...  ++| ++++.||+|+.+..+.
T Consensus        87 ~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~-~~~~~~~--gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          87 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RH-SYIASLL--GIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HH-HHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             cc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HH-HHHHHHc--CCCEEEEEEEccccccccce
Confidence            33  5677999999999988887788999999999999887555543 22 2333333  555 7889999999863320


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHH
Q 029177          130 LINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVK  168 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  168 (197)
                            .......+...+....+.    ++++++||.+|+|+.
T Consensus       161 ------~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 ------VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ------HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ------ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                  000112334455555533    578999999999884

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.5e-17  Score=114.48  Aligned_cols=163  Identities=13%  Similarity=0.014  Sum_probs=87.9

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeeeeEEEEECCeEEEEEEEecCCCcCcccc---------
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------   71 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------   71 (197)
                      ..+..++|+++|.+|||||||+|+|++........  +++...........+ ...+..++.++.......         
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhh
Confidence            34567999999999999999999998865432222  222222122222233 222222222221111110         


Q ss_pred             -cccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHH-
Q 029177           72 -RPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKK-  149 (197)
Q Consensus        72 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (197)
                       .......++.++.+.+..........  .+...+...  ..++++++||.|+.+.....        ...+...+... 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~--------~~~~~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARK--------AQLNMVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHH--------HHHHHHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHHH--------HHHHHHHHHHHh
Confidence             11112344566666676665544443  444444443  67899999999987654300        11122222222 


Q ss_pred             HcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          150 LIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       150 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      ..+..+++.+||++|+|++++++.|.+.+
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            23456889999999999999999987653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.2e-16  Score=117.80  Aligned_cols=115  Identities=16%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCC------CceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYV------PTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      +.=+|+++|+.++|||||+.+++.  +....           ++.      ..+.......+.+++  ..++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            334699999999999999999974  21110           000      000111123344566  677899999999


Q ss_pred             CcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           67 DYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      +|.......++-+|++|+|+|+.+.-..... ..|. ....+  ++|.++++||+|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~-~a~~~--~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEKY--KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHH-HHHTT--TCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHH-HHHHc--CCCEEEEEeccccccc
Confidence            9999999999999999999999998777775 5554 44444  8999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6.9e-18  Score=120.37  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=76.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccccC----cCCCcEEE
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS----YRGADVFL   83 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~~~~i   83 (197)
                      -+|+++|++|||||||+|+|.++.+.+.   ++......  .+......+.+||+||++.+...+..+    ...++.++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            3799999999999999999999865422   11122222  233334667899999998776554444    34568889


Q ss_pred             EEEECCC-hhhHHHHHHHHH----HHHhhhC-CCCCEEEEeeCCCcccc
Q 029177           84 LAFSLIS-KASYENISKKWI----PELRHYA-PTVPIVLVGTKQDLRED  126 (197)
Q Consensus        84 ~v~d~~~-~~s~~~~~~~~~----~~~~~~~-~~~p~iiv~nK~D~~~~  126 (197)
                      +++|+.+ ..+++.. ..|+    ..+.... .++|+++|+||+|+.+.
T Consensus        79 ~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             eEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            9998765 4555554 3333    2333323 58999999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.70  E-value=2.3e-16  Score=115.93  Aligned_cols=110  Identities=23%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc--CCCCC-----------CCC------CceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS--NTFPT-----------DYV------PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~--~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      +|+++|+.++|||||+.+++.  +....           ++.      ..+...-...+.+++  ..+.++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            599999999999999999964  11110           000      001111122345566  567799999999999


Q ss_pred             cccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           70 RLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      ......++.+|++++|+|+.+.-..... ..|. .+...  ++|.+++.||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~-~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTE-RAWT-VAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhH-HHHH-hhhhc--cccccccccccccc
Confidence            9888899999999999999988776665 4454 44443  79999999999975

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=3e-16  Score=114.42  Aligned_cols=158  Identities=17%  Similarity=0.101  Sum_probs=82.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------C-CCCceeeeeeEEEEECCe
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------------------------D-YVPTVFDNFSANVVVDGS   53 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~--~~~~~-----------------------------~-~~~~~~~~~~~~~~~~~~   53 (197)
                      ..++|+++|+.++|||||+.+|+.  +....                             + ....+.......+..++ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            367999999999999999999953  11100                             0 00000000111122233 


Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHH------HHHHHHHHHHhhhCCCC-CEEEEeeCCCcccc
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE------NISKKWIPELRHYAPTV-PIVLVGTKQDLRED  126 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~  126 (197)
                       ..+.+.|+|||.+|..........+|++++|+|+.+...-.      .. ...+..+...  ++ +++++.||+|+...
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~~--~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTSTTC
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHHc--CCCeEEEEEEcCCCCcc
Confidence             56789999999999998888899999999999998742110      01 1111222222  44 47889999998642


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHc-C-----CcEEEEecccCCCCHHHHHH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLI-G-----AAVYIECSSKTQQNVKTVFD  172 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~~  172 (197)
                      ...    ........++...+.... +     .++++++||++|+|+.++++
T Consensus       178 ~~~----e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chh----HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            210    000000112222222222 1     24799999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.9e-16  Score=115.04  Aligned_cols=151  Identities=13%  Similarity=0.031  Sum_probs=95.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc--CCCCC------------------C------------CCCceeeeeeEEEEECCeE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------D------------YVPTVFDNFSANVVVDGST   54 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~--~~~~~------------------~------------~~~~~~~~~~~~~~~~~~~   54 (197)
                      .++|+++|+.++|||||+.+|+.  +....                  .            ....+.+.-...+..++  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            58999999999999999999863  21110                  0            01111111123344455  


Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS-------YENISKKWIPELRHYAPTVP-IVLVGTKQDLRED  126 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~  126 (197)
                      ..+.+.|+|||.+|.......+..+|++++|+|+.+...       .... ..| ......  ++| +|++.||+|+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~-eh~-~~~~~~--gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHA-LLAFTL--GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHH-HHHHHT--TCCEEEEEEECGGGGTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH-HHH-HHHHHc--CCCeEEEEEECCCCCCC
Confidence            678899999999999888888999999999999986521       1121 222 222222  565 7889999998763


Q ss_pred             hhhhcCCCCCCCccHHHHHHHHHHcCC----cEEEEecccCCCCHHH
Q 029177          127 KQYLINHPGATPITTAQGEELKKLIGA----AVYIECSSKTQQNVKT  169 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  169 (197)
                      ...      ......++...+....+.    ++++.+|+.+|+|+-+
T Consensus       160 d~~------~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHH------HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            320      000112334445544443    5689999999988643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=5.4e-16  Score=117.58  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=84.6

Q ss_pred             CCCCcceEE-EEEECCCCCCHHHHHHHHhc--CCCCC--------------CC-CCceeeeeeEEEEE------------
Q 029177            1 MMNTARFIK-CVTVGDGAVGKTCMLISYTS--NTFPT--------------DY-VPTVFDNFSANVVV------------   50 (197)
Q Consensus         1 ~~~~~~~~k-i~vvG~~~~GKstli~~l~~--~~~~~--------------~~-~~~~~~~~~~~~~~------------   50 (197)
                      ||+....+| |+|+|+.++|||||+.+|+.  +....              +. ...+.......+..            
T Consensus        10 lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~   89 (341)
T d1n0ua2          10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ   89 (341)
T ss_dssp             HHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS
T ss_pred             HhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhc
Confidence            344555675 99999999999999999973  11110              00 00000000111111            


Q ss_pred             --CCeEEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           51 --DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        51 --~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                        ++..+.+.++|||||.+|.......++-+|++++|+|+.+.-..... ..|......   ++|+++++||+|...
T Consensus        90 ~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~---~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          90 KTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRAL  162 (341)
T ss_dssp             CCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHHH
T ss_pred             cccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc---CCCeEEEEECccccc
Confidence              34568899999999999999998999999999999999998777775 445444433   799999999999764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.5e-15  Score=109.40  Aligned_cols=156  Identities=12%  Similarity=0.091  Sum_probs=92.6

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc--CCCC------------------------------CCCCCceeeeeeEEEEECCeE
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS--NTFP------------------------------TDYVPTVFDNFSANVVVDGST   54 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (197)
                      .++|+++|+.++|||||+.+|+.  +...                              +.....+.......+..++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            58999999999999999998863  1110                              0001111111112223333  


Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHH-----HHHHHHHHhhhCCCCCEEEEeeCCCcccchhh
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI-----SKKWIPELRHYAPTVPIVLVGTKQDLREDKQY  129 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  129 (197)
                      +.+.+.|+|||.+|.......+.-+|++++|+|+.+...-...     ....+..... ....++|++.||+|+......
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSSSTTC
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCCCceEEEEEcccCCCcccc
Confidence            6788999999999999988899999999999999985321110     0111111111 123468889999998753210


Q ss_pred             hcCCCCCCCccHHHHHHHHHHcC----CcEEEEecccCCCCHHH
Q 029177          130 LINHPGATPITTAQGEELKKLIG----AAVYIECSSKTQQNVKT  169 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  169 (197)
                      .    ........+...+...++    ..+++++||.+|.|+.+
T Consensus       160 ~----~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 E----KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             H----HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             H----HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0    000011123444444443    34789999999998853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=8.1e-15  Score=113.97  Aligned_cols=163  Identities=12%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCceeeeeeEEEEECCeEEEEEEEecCCCcCcccc-----ccc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----RPL   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~   74 (197)
                      .+++|+|+|.+|||||||+|+|.+.......      .+++.+.  ......+ .-.+.+|||||.......     ...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccC-CCeEEEEeCCCcccccccHHHHHHHh
Confidence            4699999999999999999999985432211      1122111  1122222 124669999996543211     222


Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHH----HH----H
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQ----GE----E  146 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~----~  146 (197)
                      .+..+|+++++.|..  -+-.+  ..+...+...  +.|+++|.||+|.........   .......+.    .+    .
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~---~~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADG---EPQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTT---CCTTCCHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCC--CCHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhhc---ccccccHHHHHHHHHHHHHH
Confidence            356788888877643  22223  2444555554  789999999999764322110   011112211    11    1


Q ss_pred             HHHH--cCCcEEEEecccC--CCCHHHHHHHHHHHHcC
Q 029177          147 LKKL--IGAAVYIECSSKT--QQNVKTVFDAAIKVVLQ  180 (197)
Q Consensus       147 ~~~~--~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~  180 (197)
                      ....  ...+++|.+|..+  ..++.++.+.+.+.+..
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            1111  2345688888875  45899999988877644

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.51  E-value=2.5e-13  Score=99.57  Aligned_cols=118  Identities=15%  Similarity=0.125  Sum_probs=74.7

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCcccccc---------c
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------L   74 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~   74 (197)
                      ..++|+++|.+|||||||+|.+++....  ....+++..........++  ..+.++||||..+......         .
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            5699999999999999999999986432  2223444444445556677  5678999999643221100         1


Q ss_pred             CcCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCCcccch
Q 029177           75 SYRGADVFLLAFSLISKA-SYENISKKWIPELRHYA-P--TVPIVLVGTKQDLREDK  127 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~-~--~~p~iiv~nK~D~~~~~  127 (197)
                      .....|++++|++++... +...  ...+..+...+ +  -.++++|.||.|...+.
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            124568889998886542 2222  22233333222 1  24789999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=3e-14  Score=103.39  Aligned_cols=122  Identities=11%  Similarity=-0.020  Sum_probs=68.6

Q ss_pred             EEEEEEecCCCcCcccccccC-----cCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLS-----YRGADVFLLAFSLIS---KASYENISKKWIPELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      ..+.+.|+||+..+.......     ....+.+++++|+..   +.........-.......  ..|.++|.||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence            346789999997653221111     124568889998754   333332211111111122  6899999999998864


Q ss_pred             hhhhc-----------------CCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          127 KQYLI-----------------NHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       127 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                      .....                 .....+..............+.++++++||++|+|+++++..|.+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            32110                 00000000111111222334567899999999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.25  E-value=1.3e-11  Score=92.81  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCC
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHP  134 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~  134 (197)
                      +.+.|++|.|.-.-..   ....-+|..++|..+...+.......-   .+     .++=++|.||+|+.+...      
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~g---il-----E~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhh---Hh-----hhhheeeEeccccccchH------
Confidence            4566778877533211   123458999999998876554443111   11     134588899999876432      


Q ss_pred             CCCCccHHHHHHHHHHc---------CCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          135 GATPITTAQGEELKKLI---------GAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                          .......++....         +.++++.+||++++|+++++++|.+..
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence                2222222222221         345799999999999999999998754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.5e-11  Score=92.65  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHH-----
Q 029177           76 YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKL-----  150 (197)
Q Consensus        76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  150 (197)
                      ...+|.+++|.++...+.......-.    .+    ++=++|+||+|+......        .....+.....+.     
T Consensus       165 ~~~aD~~l~v~~P~~Gd~iq~~k~gi----~e----~aDi~VvNKaD~~~~~~~--------~~~~~~~~~al~~~~~~~  228 (327)
T d2p67a1         165 ARMVDCFISLQIAGGGDDLQGIKKGL----ME----VADLIVINKDDGDNHTNV--------AIARHMYESALHILRRKY  228 (327)
T ss_dssp             HTTCSEEEEEECC------CCCCHHH----HH----HCSEEEECCCCTTCHHHH--------HHHHHHHHHHHHHSCCSB
T ss_pred             hhccceEEEEecCCCchhhhhhchhh----hc----cccEEEEEeecccchHHH--------HHHHHHHHHHhhhcccCC
Confidence            45689999998776554443331111    11    244788899998764320        0111222222221     


Q ss_pred             -cCCcEEEEecccCCCCHHHHHHHHHHHH
Q 029177          151 -IGAAVYIECSSKTQQNVKTVFDAAIKVV  178 (197)
Q Consensus       151 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  178 (197)
                       ...+|++.+||.+|+|++++++.|.+..
T Consensus       229 ~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         229 DEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             TTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             CCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence             1235899999999999999999998754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.18  E-value=2.3e-10  Score=84.44  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEEECCe-------------E--EEEEEEecCCCcCcc--
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS-------------T--VNLGLWDTAGQEDYN--   69 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~D~~g~~~~~--   69 (197)
                      +||.+||.|+||||||+++++.... ...|..++.+.....+.+.+.             .  ..+++.|+||.-.-.  
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            6999999999999999999998543 345555654443334444332             1  258899999964322  


Q ss_pred             --ccccc---CcCCCcEEEEEEECC
Q 029177           70 --RLRPL---SYRGADVFLLAFSLI   89 (197)
Q Consensus        70 --~~~~~---~~~~~~~~i~v~d~~   89 (197)
                        .+...   .++++|+++.|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence              22333   367999999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=2.6e-10  Score=85.71  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=45.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeE-EEE---------------------ECCeEEEEEEEecCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSA-NVV---------------------VDGSTVNLGLWDTAG   64 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~~~D~~g   64 (197)
                      ++|+++|.||||||||+|+|++... ..+|+.||.+.... ...                     .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998543 33454444322111 110                     011236789999999


Q ss_pred             CcCc-------ccccccCcCCCcEEEEEEECCC
Q 029177           65 QEDY-------NRLRPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        65 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~   90 (197)
                      .-.-       ....-..++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321       1122234678999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=6.3e-10  Score=82.75  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCceeeeeeEEEEECCe---------------EEEEEEEecCCCcCc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   68 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~   68 (197)
                      ..+||.+||.|+||||||++++++..  -..+|+.||.+.....+.+.+.               ...+++.|+||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            45899999999999999999999753  3567777775554445555442               246889999986432


Q ss_pred             ccc-------cccCcCCCcEEEEEEECCC
Q 029177           69 NRL-------RPLSYRGADVFLLAFSLIS   90 (197)
Q Consensus        69 ~~~-------~~~~~~~~~~~i~v~d~~~   90 (197)
                      .+.       .-..++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            221       2223589999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=6.8e-09  Score=77.07  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeeeeEEEE--------E---CC------------------------
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV--------V---DG------------------------   52 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~--------~---~~------------------------   52 (197)
                      +|+|+|..++|||||+|+|++..+ +....+++.........        .   .+                        
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN  107 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSST
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCC
Confidence            799999999999999999999775 44444443111111100        0   00                        


Q ss_pred             -----e----------EEEEEEEecCCCcCcc-------------cccccCcCCCc-EEEEEEECCChhhHHHHHHHHHH
Q 029177           53 -----S----------TVNLGLWDTAGQEDYN-------------RLRPLSYRGAD-VFLLAFSLISKASYENISKKWIP  103 (197)
Q Consensus        53 -----~----------~~~~~~~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~  103 (197)
                           .          ...+.++|+||.....             .+...++...+ ++++|.+++...+-... ..+..
T Consensus       108 ~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~~~  186 (299)
T d2akab1         108 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAK  186 (299)
T ss_dssp             TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHHH
T ss_pred             cCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHHHH
Confidence                 0          0136799999964321             11223345555 55566677665554444 45555


Q ss_pred             HHhhhCCCCCEEEEeeCCCcccc
Q 029177          104 ELRHYAPTVPIVLVGTKQDLRED  126 (197)
Q Consensus       104 ~~~~~~~~~p~iiv~nK~D~~~~  126 (197)
                      .+...  ..++++|.||+|...+
T Consensus       187 ~~~~~--~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         187 EVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHCTT--CSSEEEEEECGGGSCT
T ss_pred             HhCcC--CCceeeEEeccccccc
Confidence            55443  4689999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.86  E-value=2e-09  Score=80.30  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      +|+|+|..++|||||+|+|++..+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            799999999999999999999775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=9.6e-09  Score=75.35  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=35.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCceeeeeeEEEEECCeEEEEEEEecCCCc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFP-T-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   66 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   66 (197)
                      ...++|+|+|.||||||||+|+|.+.... . ...++|..  ...+..+.   .+.++||||--
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~--~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCccccccc--ceEEECCC---CeEEecCCCcc
Confidence            35789999999999999999999985432 1 22222221  12223333   36799999963

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=6.6e-08  Score=68.27  Aligned_cols=58  Identities=16%  Similarity=0.023  Sum_probs=35.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC-------CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ..+++|.+|||||||+|+|....-...       ..+..++....-+.+++.   -.++||||.+.+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            578999999999999999987532111       111112333333444432   2489999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=6.7e-07  Score=63.00  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             CcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc-CC
Q 029177           75 SYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI-GA  153 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  153 (197)
                      ...+.|.+++|+++.+|+.-....++|+-.....  ++|.+||.||+|+.++..            .+...++...+ ..
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~------------~~~~~~~~~~~~~~   72 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD------------LRKVRELEEIYSGL   72 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH------------HHHHHHHHHHHTTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH------------HHHHHHhhcccccc
Confidence            3568899999999988754333337777666655  899999999999965322            12223333332 33


Q ss_pred             cEEEEecccCCCCHHHHHHHHH
Q 029177          154 AVYIECSSKTQQNVKTVFDAAI  175 (197)
Q Consensus       154 ~~~~~~Sa~~~~~i~~~~~~i~  175 (197)
                      .+++.+|+++++|++++...+.
T Consensus        73 ~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          73 YPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHS
T ss_pred             eeEEEeccccchhHhhHHHHhc
Confidence            5789999999999999887663

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=1.4e-07  Score=66.76  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC------C-CCCceeeeeeEEEEECCeEEEEEEEecCCCcCcc
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTFPT------D-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   69 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   69 (197)
                      ..+++|.+|||||||+|+|....-..      . ..+..++....-+..++.    .++||||.+.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            46799999999999999999752211      1 111112222222334553    278999987764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.22  E-value=1.9e-06  Score=62.74  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             cCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHc--
Q 029177           74 LSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLI--  151 (197)
Q Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (197)
                      ..++.+|++++|+|+.++.+..+-  .+...+    .+.|.++|+||+|+.+.               +....|...+  
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~---------------~~~~~w~~~f~~   69 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADA---------------AVTQQWKEHFEN   69 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCH---------------HHHHHHHHHHHT
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCch---------------HHHHHHHHHHHh
Confidence            357889999999999998765542  222222    36899999999999653               3333343322  


Q ss_pred             CCcEEEEecccCCCCHHHHHHHHHHHHc
Q 029177          152 GAAVYIECSSKTQQNVKTVFDAAIKVVL  179 (197)
Q Consensus       152 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  179 (197)
                      .....+.+|+.++.+..++...+.+.+.
T Consensus        70 ~~~~~i~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          70 QGIRSLSINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cCCccceeecccCCCccccchhhhhhhh
Confidence            2237889999999999888877766543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1.1e-06  Score=62.06  Aligned_cols=85  Identities=20%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CcCCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHH---HHH
Q 029177           75 SYRGADVFLLAFSLISKAS-YENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEEL---KKL  150 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  150 (197)
                      ...+.|.+++|+++.+|+- ...+ ++++-.....  ++|.+||.||+|+.++..           ..+....+   ...
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~   72 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRN   72 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEecccccccHH-----------HHHHHHHHHHHHhh
Confidence            3468899999999988753 4444 6776665554  899999999999976432           12222333   334


Q ss_pred             cCCcEEEEecccCCCCHHHHHHHH
Q 029177          151 IGAAVYIECSSKTQQNVKTVFDAA  174 (197)
Q Consensus       151 ~~~~~~~~~Sa~~~~~i~~~~~~i  174 (197)
                      .+. +++.+|+++++|++++...+
T Consensus        73 ~g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          73 IGY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HTC-CEEECCHHHHTTCTTTGGGG
T ss_pred             ccc-cceeeecCChhHHHHHHHhh
Confidence            465 89999999999998876554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.02  E-value=1.7e-06  Score=59.62  Aligned_cols=28  Identities=14%  Similarity=0.147  Sum_probs=25.1

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      |++.++..|+|+|+|||||||+.++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            6677888999999999999999998875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.98  E-value=1.7e-06  Score=58.48  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999886

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.90  E-value=3.3e-06  Score=56.73  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=23.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +++.++|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46778999999999999999988865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=3.1e-06  Score=57.33  Aligned_cols=22  Identities=14%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +|+|.|++|||||||+++|...
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.86  E-value=4.1e-06  Score=56.11  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+|+++|+|||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=7.9e-06  Score=56.09  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +.+.+||+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            346789999999999999999998763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.2e-06  Score=54.44  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            388999999999999999975

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=2.4e-05  Score=54.98  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      .+|.|--|||||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            577899999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=9.3e-06  Score=55.00  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988855

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.68  E-value=1.2e-05  Score=55.04  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +-+||+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988865

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.65  E-value=8.4e-06  Score=55.79  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=21.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ++++|+++|+|||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.64  E-value=1.4e-05  Score=52.41  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|+|||||||++++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.5e-05  Score=54.12  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.63  E-value=1.4e-05  Score=54.21  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ++|+++|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=1.7e-05  Score=53.63  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+++|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.1e-05  Score=53.26  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +||+++|+|||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.54  E-value=2.1e-05  Score=52.37  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |++.|+|||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.2e-05  Score=52.90  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.5

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +..|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.3e-05  Score=51.67  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=3.1e-05  Score=51.65  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999998875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=4.8e-05  Score=51.20  Aligned_cols=120  Identities=14%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCC-cCcccccccCcCCCcEEE
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ-EDYNRLRPLSYRGADVFL   83 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i   83 (197)
                      ..+.=|+++|.|||||||+..++....   .+         ..+..          |.-+. ..........+.  .+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~---~~---------~~i~~----------D~~~~~~~~~~~~~~~l~--~g~~   67 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA---GY---------VHVNR----------DTLGSWQRCVSSCQAALR--QGKR   67 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG---TC---------EEEEH----------HHHCSHHHHHHHHHHHHH--TTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc---CC---------EEEch----------HHHHHHHHHHHHHHHHHH--CCCC
Confidence            456679999999999999999986421   00         00000          00000 001111111121  1224


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh----hhcCCCCCCCccHHHHHHHHHHcC
Q 029177           84 LAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ----YLINHPGATPITTAQGEELKKLIG  152 (197)
Q Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++|.++...-..  ..|++..+.+  +.++.++.-..+......    +.........++......+.+.+.
T Consensus        68 vIiD~t~~~~~~R--~~~~~~a~~~--~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe  136 (172)
T d1yj5a2          68 VVIDNTNPDVPSR--ARYIQCAKDA--GVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFE  136 (172)
T ss_dssp             EEEESCCCSHHHH--HHHHHHHHHH--TCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCC
T ss_pred             ceeeCcCCCHHHH--HHHHHHHHhc--CCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCC
Confidence            5678887654333  5677777766  677777766666543211    111122223455555556665553

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=4e-05  Score=52.91  Aligned_cols=22  Identities=36%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=3.3e-05  Score=51.54  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      ||+++|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=5.8e-05  Score=51.35  Aligned_cols=27  Identities=22%  Similarity=0.103  Sum_probs=22.9

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ++..++-|+|-|++|||||||.++|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345577899999999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=4.8e-05  Score=51.82  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.9e-05  Score=51.00  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999988875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.35  E-value=4.7e-05  Score=50.62  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+++|++||||||+...|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.34  E-value=5.5e-05  Score=50.91  Aligned_cols=20  Identities=25%  Similarity=0.140  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=5.8e-05  Score=51.14  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.7e-05  Score=53.26  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +++|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999888764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.30  E-value=9.1e-05  Score=49.45  Aligned_cols=24  Identities=13%  Similarity=0.050  Sum_probs=20.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +-+-|.++|.|||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999987764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.2e-05  Score=49.74  Aligned_cols=21  Identities=19%  Similarity=0.234  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      =+++.|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=7.6e-05  Score=50.50  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+++||+||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999863

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.24  E-value=7.7e-05  Score=49.73  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999888653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00012  Score=49.97  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ++.=.|+++|+|||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3334588999999999999998876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=8.6e-05  Score=50.72  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.21  E-value=9.8e-05  Score=51.40  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +.++|+|-|+|||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00027  Score=51.16  Aligned_cols=61  Identities=18%  Similarity=0.089  Sum_probs=38.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeeeeEEEEE-CCeEEEEEEEecCCCcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANVVV-DGSTVNLGLWDTAGQED   67 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~   67 (197)
                      ..-|.|+|+.++|||+|+|+|++..+.-..    .+.+.........+ ++....+.++||.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            456899999999999999999986532221    12221111111111 33445678999999654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.7e-05  Score=51.15  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.19  E-value=0.00011  Score=52.18  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999888653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.19  E-value=0.0001  Score=49.06  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            666799999999999988763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0001  Score=51.83  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988663

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.18  E-value=0.00011  Score=50.15  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             CCCcceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            2 MNTARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         2 ~~~~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ....+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999988753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00012  Score=50.05  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      =++++||+||||||++++.|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            47999999999999999877653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00012  Score=52.32  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999887653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00011  Score=51.71  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999877653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.16  E-value=0.00011  Score=52.62  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +++|+|++|+|||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            699999999999999988865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.00012  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.15  E-value=0.00012  Score=48.95  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999988854

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.12  E-value=0.00011  Score=50.19  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|+++|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0022  Score=45.05  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999887653

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.11  E-value=0.00014  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3578999999999999888774

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00014  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999988764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00018  Score=49.82  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ++-|+|-|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999998865

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.07  E-value=0.00016  Score=51.63  Aligned_cols=25  Identities=16%  Similarity=0.100  Sum_probs=21.4

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+--|++.|+||+|||||+..+.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4456999999999999999988763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=8.8e-05  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -.-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999988865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00014  Score=52.71  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00017  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      =++++||+||||||++++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4799999999999999987765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.03  E-value=0.00011  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.02  E-value=0.00019  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999888764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.01  E-value=0.00016  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=17.4

Q ss_pred             EE-EEECCCCCCHHHHHHHHhc
Q 029177            9 KC-VTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki-~vvG~~~~GKstli~~l~~   29 (197)
                      || ++.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            55 4579999999999988854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00016  Score=51.19  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999888663

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.96  E-value=0.00013  Score=52.10  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +++|+|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999976654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.96  E-value=0.00022  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999775

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00017  Score=50.83  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999887

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00039  Score=48.23  Aligned_cols=26  Identities=19%  Similarity=0.097  Sum_probs=21.2

Q ss_pred             CCcceEEEEEECCCCCCHHHHHHHHh
Q 029177            3 NTARFIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         3 ~~~~~~ki~vvG~~~~GKstli~~l~   28 (197)
                      +..++.-|+++|++||||||.+-+|-
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            44578899999999999999875543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00024  Score=50.05  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=20.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00027  Score=49.93  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0003  Score=50.30  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999988753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.00032  Score=49.30  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.||||+||||+++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999988875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.82  E-value=0.00016  Score=51.16  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999888774

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.79  E-value=0.00035  Score=49.86  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++++|+.|+|||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            3789999999999999998875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.78  E-value=0.00033  Score=48.44  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHhc
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..+..-|.+.|.||||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999988864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00058  Score=47.20  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHh
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~   28 (197)
                      ...+.-|+++|++||||||.+-+|-
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456779999999999999996654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00068  Score=45.89  Aligned_cols=26  Identities=19%  Similarity=0.042  Sum_probs=22.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      .++-|+|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            36789999999999999999886543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.69  E-value=0.0005  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999888764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.00032  Score=51.84  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -+|+|.|++||||||+++.|..-.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            369999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.67  E-value=0.0005  Score=48.00  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999988865

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.65  E-value=0.0006  Score=47.16  Aligned_cols=91  Identities=16%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             EEEEEEecCCCcCcccc------cccC--cCCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 029177           55 VNLGLWDTAGQEDYNRL------RPLS--YRGADVFLLAFSLISKAS-YENISKKWIPELRHYAPTVPIVLVGTKQDLRE  125 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~------~~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  125 (197)
                      +.+.++||+|...+...      ...+  .-..+-+++|.|++.... .+.. ..+   ....  + +--++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~~---~~~~--~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKF---NQAS--K-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHH---HHHC--T-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH-hhh---hccc--C-cceEEEecccCCC
Confidence            46779999997544321      0111  123567788888876543 3222 222   1211  1 2346689999865


Q ss_pred             chhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHHH
Q 029177          126 DKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVKT  169 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  169 (197)
                                    ..-.+..++...+. |+..++  +|+++++
T Consensus       168 --------------~~G~~l~~~~~~~l-Pi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 --------------KGGGALSAVAATGA-TIKFIG--TGEKIDE  194 (211)
T ss_dssp             --------------CHHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             --------------cccHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence                          33456677888887 665555  4666643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00056  Score=47.24  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      =|+|.|+|||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999987765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00056  Score=50.22  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++||||+|||.|.+.+..
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.60  E-value=0.00058  Score=48.46  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      .-.|++.|+||+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00066  Score=47.92  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|+||+||||+++.+...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.56  E-value=0.00053  Score=48.76  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999998865

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.49  E-value=0.00061  Score=48.64  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999888753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00087  Score=45.85  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.00055  Score=51.82  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=18.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      =++++||+||||||++++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3689999999999999965543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0011  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.057  Sum_probs=21.6

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..++-|+|.|++||||||+.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4578999999999999999987754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.001  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|+||+|||++++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.33  E-value=0.0012  Score=45.50  Aligned_cols=90  Identities=13%  Similarity=0.034  Sum_probs=49.8

Q ss_pred             EEEEEEecCCCcCccccc----ccC--------cCCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 029177           55 VNLGLWDTAGQEDYNRLR----PLS--------YRGADVFLLAFSLISKAS-YENISKKWIPELRHYAPTVPIVLVGTKQ  121 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~----~~~--------~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~  121 (197)
                      +.+.++||+|...+....    ..+        ....+-.++|.|++.... ...+ ..+...+.      +--++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~~------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAVG------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHHC------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhccC------CceEEEecc
Confidence            467899999975543221    111        124467888888876543 3333 23333222      224567999


Q ss_pred             CcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEEecccCCCCHH
Q 029177          122 DLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIECSSKTQQNVK  168 (197)
Q Consensus       122 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  168 (197)
                      |....-              -.+..++...+. |+..++  +|++.+
T Consensus       162 Det~~~--------------G~~l~~~~~~~~-Pi~~i~--~Gq~p~  191 (207)
T d1okkd2         162 DGTAKG--------------GVLIPIVRTLKV-PIKFVG--VGEGPD  191 (207)
T ss_dssp             TSSCCC--------------TTHHHHHHHHCC-CEEEEE--CSSSTT
T ss_pred             CCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCChH
Confidence            976432              234566777776 555544  344443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0011  Score=46.25  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            488999999999999988865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0009  Score=51.53  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +|+++||+|||||-|+++|-.
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0012  Score=45.85  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999987754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.25  E-value=0.0013  Score=45.34  Aligned_cols=85  Identities=19%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             EEEEEEecCCCcCccccccc----C--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchh
Q 029177           55 VNLGLWDTAGQEDYNRLRPL----S--YRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQ  128 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~  128 (197)
                      +.+.++||+|........-.    +  ..+.+-+++|.|.+....-......+.+.+.      +-=++.||.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcccc--
Confidence            46779999997654321111    1  2356788999998776443332132222221      12366799997542  


Q ss_pred             hhcCCCCCCCccHHHHHHHHHHcCCcEEEEec
Q 029177          129 YLINHPGATPITTAQGEELKKLIGAAVYIECS  160 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (197)
                                  .-.+..++...+. |+..++
T Consensus       165 ------------~G~~l~~~~~~~~-Pi~~i~  183 (207)
T d1ls1a2         165 ------------GGAALSARHVTGK-PIYFAG  183 (207)
T ss_dssp             ------------CHHHHHHHHHHCC-CEEEEC
T ss_pred             ------------chHHHHHHHHHCC-CEEEEe
Confidence                        2445677777886 555443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0012  Score=45.79  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999988763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0013  Score=46.93  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|+||+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            589999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0014  Score=46.75  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.+++.|+||+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            36999999999999999988764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0013  Score=45.24  Aligned_cols=20  Identities=25%  Similarity=0.109  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |++-|.+||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0021  Score=46.38  Aligned_cols=24  Identities=17%  Similarity=0.040  Sum_probs=20.5

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHh
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~   28 (197)
                      .+++=|.|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            457889999999999999997653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.13  E-value=0.0021  Score=43.01  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      -|++.|++|+||||+.-.|....+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            589999999999999999887654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0027  Score=43.56  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      +-|+|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4588999999999999998865443

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0014  Score=45.80  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887663

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0021  Score=43.71  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      =+.|.|+||+|||+|+..|....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36789999999999999887654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.002  Score=46.08  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35999999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.002  Score=44.36  Aligned_cols=20  Identities=20%  Similarity=0.135  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998877654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.87  E-value=0.0027  Score=42.42  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      -|++.|++|+||||+...|....+
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            589999999999999999987643

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0042  Score=42.43  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +-|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999988764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.82  E-value=0.0012  Score=48.68  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.79  E-value=0.0026  Score=45.70  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=19.8

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .-|+|.|.+|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0024  Score=44.38  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -++|.|+||+|||+|+..|....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37889999999999999987654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.70  E-value=0.0027  Score=44.48  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      =++|.|+||+|||+|..+|....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37889999999999999887644

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.68  E-value=0.0035  Score=41.56  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSNTF   32 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~~~   32 (197)
                      .-|++.|++|+||||+.-.|..+.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999988887654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.019  Score=37.41  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Q 029177            8 IKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      .-|++-|+=|+|||||++.+...
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            45889999999999999998874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.47  E-value=0.0039  Score=46.56  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -+++.||||+|||++...+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0051  Score=45.01  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             cceE-EEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFI-KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~-ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++. .++++|++|||||.|...+..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            3444 589999999999999988764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.46  E-value=0.0031  Score=46.54  Aligned_cols=26  Identities=15%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +..++|.|=|..||||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.00082  Score=45.42  Aligned_cols=18  Identities=17%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 029177           11 VTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        11 ~vvG~~~~GKstli~~l~   28 (197)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            468999999999998875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.37  E-value=0.0043  Score=43.23  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      -++|.|+||+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788999999999999888765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.35  E-value=0.002  Score=46.58  Aligned_cols=21  Identities=10%  Similarity=0.251  Sum_probs=15.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      =|+|.|.+||||||+.+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0043  Score=43.22  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|++=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588899999999999998876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.28  E-value=0.0044  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      -+++++||+|||||-|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4599999999999999998864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.24  E-value=0.0071  Score=44.58  Aligned_cols=25  Identities=16%  Similarity=0.111  Sum_probs=22.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      ..++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999988763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.005  Score=42.41  Aligned_cols=21  Identities=19%  Similarity=0.066  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788999999999999887653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.16  E-value=0.0053  Score=42.60  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      =++|.|+||+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37889999999999999887643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0063  Score=42.42  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSNT   31 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~~   31 (197)
                      -++|.|+||+|||+|..+|....
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.96  E-value=0.0077  Score=44.08  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      +++.|+||+|||.|.+.+-.
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.0078  Score=41.15  Aligned_cols=21  Identities=5%  Similarity=0.156  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.94  E-value=0.0043  Score=44.84  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=15.6

Q ss_pred             EEECCCCCCHHHHHHHH
Q 029177           11 VTVGDGAVGKTCMLISY   27 (197)
Q Consensus        11 ~vvG~~~~GKstli~~l   27 (197)
                      +++|+.|+||||++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68999999999999877

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0078  Score=42.04  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999987754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.85  E-value=0.0094  Score=43.79  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            357899999999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.009  Score=44.91  Aligned_cols=19  Identities=21%  Similarity=0.379  Sum_probs=16.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999873

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.59  E-value=0.0097  Score=45.01  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      |++.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999998874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.58  E-value=0.0093  Score=40.98  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=17.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      -++|.|+||+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999997664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.47  E-value=0.0088  Score=40.62  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=20.2

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      +.=-+++.|++++|||+|+..+..-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3345889999999999999887653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.45  E-value=0.0078  Score=43.26  Aligned_cols=15  Identities=27%  Similarity=0.671  Sum_probs=13.1

Q ss_pred             EEEECCCCCCHHHHH
Q 029177           10 CVTVGDGAVGKTCML   24 (197)
Q Consensus        10 i~vvG~~~~GKstli   24 (197)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.40  E-value=0.012  Score=41.72  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      +++.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67899999999999977764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.25  E-value=0.014  Score=40.52  Aligned_cols=21  Identities=19%  Similarity=-0.039  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.24  E-value=0.014  Score=40.05  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      +.+.|++|+|||-|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999888764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.09  E-value=0.01  Score=42.94  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=13.2

Q ss_pred             EEEECCCCCCHHHHH
Q 029177           10 CVTVGDGAVGKTCML   24 (197)
Q Consensus        10 i~vvG~~~~GKstli   24 (197)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999765

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.79  E-value=0.019  Score=41.86  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             cceE-EEEEECCCCCCHHHHHHHHhc
Q 029177            5 ARFI-KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         5 ~~~~-ki~vvG~~~~GKstli~~l~~   29 (197)
                      .++. .++++|++|+|||.+.+.+..
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHH
Confidence            4444 578889999999999987654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.016  Score=40.95  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      .+|.|++|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999997764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.016  Score=43.89  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q 029177            9 KCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~   29 (197)
                      +++|+|.+|+|||+++..+..
T Consensus        52 H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999877664

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.022  Score=40.91  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999887653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.034  Score=41.24  Aligned_cols=18  Identities=28%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             EEEECCCCCCHHHHHHHH
Q 029177           10 CVTVGDGAVGKTCMLISY   27 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l   27 (197)
                      .+|.|+||+||||++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            678899999999987543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.70  E-value=0.036  Score=39.37  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.0

Q ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Q 029177            6 RFIKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         6 ~~~ki~vvG~~~~GKstli~~l~~   29 (197)
                      +.-=+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            444578899999999999988765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=0.058  Score=33.24  Aligned_cols=24  Identities=17%  Similarity=0.029  Sum_probs=21.1

Q ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Q 029177            7 FIKCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         7 ~~ki~vvG~~~~GKstli~~l~~~   30 (197)
                      =|-|.+-|.+|+|||||.+.|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999999999988653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.063  Score=37.93  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      +.+.|++++|||||+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578899999999999777654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.40  E-value=0.059  Score=37.87  Aligned_cols=69  Identities=12%  Similarity=0.148  Sum_probs=39.3

Q ss_pred             EEEEEEecCCCcCccc-ccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCCccc
Q 029177           55 VNLGLWDTAGQEDYNR-LRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYA--PTVPI-VLVGTKQDLRE  125 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~D~~~  125 (197)
                      +.+.+.|+|+...... .......-+|.++++.+. +..++... ..+...+....  .+.++ -++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCC
Confidence            5677899987543222 112223457887777765 56666665 45555554432  23333 37789887654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.28  E-value=0.065  Score=37.44  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHhc
Q 029177            8 IKCVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus         8 ~ki~vvG~~~~GKstli~~l~~   29 (197)
                      ..|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999988765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.09  E-value=0.07  Score=37.93  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      |++++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999888654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.12  Score=34.73  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=16.3

Q ss_pred             EEEEECCC-CCCHHHHHHHHh
Q 029177            9 KCVTVGDG-AVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~-~~GKstli~~l~   28 (197)
                      |+.|.|.. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            68899995 999999985443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.12  Score=36.44  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=24.3

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCC
Q 029177           80 DVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQ  121 (197)
Q Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~  121 (197)
                      +.+++|-.. ++.+..+. .+..+.+...  ++|+ -+|+|+.
T Consensus       199 t~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            345555554 45566666 6667777766  6676 4777996

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.96  E-value=0.08  Score=35.11  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      ++|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.85  E-value=0.13  Score=36.51  Aligned_cols=68  Identities=10%  Similarity=0.097  Sum_probs=35.1

Q ss_pred             EEEEEEecCCCcCcccccccC-cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh--CCCCCEE-EEeeCCCcc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLS-YRGADVFLLAFSLISKASYENISKKWIPELRHY--APTVPIV-LVGTKQDLR  124 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~i-iv~nK~D~~  124 (197)
                      +.+.++|+|+........... ...++.++++.. .+..++..+ ....+.+...  ..+.++. +|.|+.+..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcch
Confidence            566788988754322221111 234566665544 455555555 3444444332  2345553 778987653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.13  Score=36.03  Aligned_cols=18  Identities=39%  Similarity=0.610  Sum_probs=13.9

Q ss_pred             EEEECCCCCCHHHHHHHH
Q 029177           10 CVTVGDGAVGKTCMLISY   27 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l   27 (197)
                      |++-|..||||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455699999999986443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.11  Score=37.55  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=13.1

Q ss_pred             EEECCCCCCHHHHH
Q 029177           11 VTVGDGAVGKTCML   24 (197)
Q Consensus        11 ~vvG~~~~GKstli   24 (197)
                      ++.|.+|+|||||.
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999987

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.00  E-value=1.1  Score=28.93  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccchhhhcCCCCCCCccHHHHHHHHHHcCCcEEEE
Q 029177           88 LISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVYIE  158 (197)
Q Consensus        88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      .+|+.+++.......+.+...  ..|+|++|......+              ..+++.+|++..++ |++.
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~t   55 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVAT   55 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEE
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEe
Confidence            367778877777777777665  789999999887644              45778999999998 6664

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.15  E-value=0.12  Score=37.45  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.6

Q ss_pred             EEEECCCCCCHHHHH
Q 029177           10 CVTVGDGAVGKTCML   24 (197)
Q Consensus        10 i~vvG~~~~GKstli   24 (197)
                      -++.|.+|+|||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            478999999999987

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.14  E-value=0.14  Score=31.74  Aligned_cols=20  Identities=10%  Similarity=-0.042  Sum_probs=15.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029177            9 KCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~   28 (197)
                      ..+|.++.|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35779999999999885544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.11  E-value=0.12  Score=31.79  Aligned_cols=16  Identities=25%  Similarity=0.073  Sum_probs=13.0

Q ss_pred             EEEEECCCCCCHHHHH
Q 029177            9 KCVTVGDGAVGKTCML   24 (197)
Q Consensus         9 ki~vvG~~~~GKstli   24 (197)
                      ++++.+++|+|||...
T Consensus         9 ~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             EEEECCCTTSSTTTTH
T ss_pred             cEEEEcCCCCChhHHH
Confidence            6788899999999433

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.07  E-value=0.14  Score=37.06  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHHH
Q 029177           10 CVTVGDGAVGKTCML   24 (197)
Q Consensus        10 i~vvG~~~~GKstli   24 (197)
                      -++.|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            368999999999998

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.21  Score=34.40  Aligned_cols=19  Identities=16%  Similarity=0.233  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      ++|.|+..+||||+++.+-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6789999999999998764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.97  E-value=0.13  Score=36.71  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998766543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.56  E-value=0.23  Score=35.05  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q 029177           10 CVTVGDGAVGKTCMLISYTS   29 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~   29 (197)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56889999999999977664

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.46  E-value=0.24  Score=33.92  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029177           10 CVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~   28 (197)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.81  E-value=0.29  Score=32.76  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             cceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEecCCCcCccccccc----CcCC
Q 029177            5 ARFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL----SYRG   78 (197)
Q Consensus         5 ~~~~ki~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~----~~~~   78 (197)
                      .....+++.|++|+|||++...+...  .+... .+.   .+.  +.-++..+        |-+.-+.....    .+. 
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~-h~D---~~~--i~~~~~~I--------~Id~IR~i~~~~~~~~~~-   77 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPK-ASD---VLE--IDPEGENI--------GIDDIRTIKDFLNYSPEL-   77 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC-TTT---EEE--ECCSSSCB--------CHHHHHHHHHHHTSCCSS-
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccC-CCC---EEE--EeCCcCCC--------CHHHHHHHHHHHhhCccc-
Confidence            34678999999999999999887752  21111 111   111  00011110        11111111111    111 


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 029177           79 ADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLR  124 (197)
Q Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  124 (197)
                      ...=++++|-.+.-+.... ..++..+.+..++.-++++.+..+..
T Consensus        78 ~~~KviIId~ad~l~~~aq-NaLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          78 YTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             SSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CCCEEEEEeCccccchhhh-hHHHHHHhCCCCCceeeeccCChhhC
Confidence            1222555665555555555 66778888765666777777666543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.26  E-value=0.25  Score=34.79  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHhcC
Q 029177           10 CVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus        10 i~vvG~~~~GKstli~~l~~~   30 (197)
                      +.+.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            567899999999999777654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.60  E-value=0.22  Score=35.33  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC
Q 029177            9 KCVTVGDGAVGKTCMLISYTSN   30 (197)
Q Consensus         9 ki~vvG~~~~GKstli~~l~~~   30 (197)
                      |+.++|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            7889999999999999765544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.52  E-value=2.1  Score=28.48  Aligned_cols=66  Identities=12%  Similarity=0.005  Sum_probs=44.0

Q ss_pred             EEEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCccc
Q 029177           54 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIV-LVGTKQDLRE  125 (197)
Q Consensus        54 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~  125 (197)
                      .+.+.++|+++....  .....+..+|.++++...+ ..++... .+....+.+.  +.|++ +|.|+.+...
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDT-MKVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHH-HHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchh-hHHHHHHhhh--hhhhhhhhhccccccc
Confidence            356778999876432  2233456799999988864 5566666 5555666554  67775 7889987654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.18  E-value=0.4  Score=30.09  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=13.3

Q ss_pred             EEECCCCCCHHH-HHHHH
Q 029177           11 VTVGDGAVGKTC-MLISY   27 (197)
Q Consensus        11 ~vvG~~~~GKst-li~~l   27 (197)
                      +++|+=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            468999999999 55544

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.74  E-value=0.49  Score=31.83  Aligned_cols=63  Identities=13%  Similarity=0.014  Sum_probs=37.7

Q ss_pred             EEEEEEecCCCcCcccccccCcCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCc
Q 029177           55 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPI-VLVGTKQDL  123 (197)
Q Consensus        55 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~  123 (197)
                      +.+.++|+|+....  .....+..+|.++++...+ ..++... .+....+...  +.++ -+|.|+.+-
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~iv~N~~~~  173 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDG-LKTKIVAERL--GTKVLGVVVNRITT  173 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHH-HHHHHHHHHH--TCEEEEEEEEEECT
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhh-hhhhhhhhhc--cccccccccccccc
Confidence            44678898886432  2223455689988888864 4455554 3344444444  3444 377898764

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.96  E-value=0.51  Score=31.03  Aligned_cols=16  Identities=31%  Similarity=0.524  Sum_probs=13.3

Q ss_pred             EEEEECCCCCCHHHHH
Q 029177            9 KCVTVGDGAVGKTCML   24 (197)
Q Consensus         9 ki~vvG~~~~GKstli   24 (197)
                      +++++++.|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4788999999999743

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=80.92  E-value=1.7  Score=28.20  Aligned_cols=49  Identities=16%  Similarity=0.110  Sum_probs=28.1

Q ss_pred             CcCCCcEEEEEEECCChh--hHHHH-------HHHHHHHHhhhCC-CCCEEEEeeCCCc
Q 029177           75 SYRGADVFLLAFSLISKA--SYENI-------SKKWIPELRHYAP-TVPIVLVGTKQDL  123 (197)
Q Consensus        75 ~~~~~~~~i~v~d~~~~~--s~~~~-------~~~~~~~~~~~~~-~~p~iiv~nK~D~  123 (197)
                      .+.++|+++++-......  +-.++       .+.+.+.+.++.+ +.-+++++|=.|.
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence            367899999887554322  11111       1344556666654 5556677776663

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.91  E-value=3.9  Score=27.29  Aligned_cols=25  Identities=16%  Similarity=0.017  Sum_probs=16.2

Q ss_pred             CcceEEEEEECCCCCCHHHHHHHHh
Q 029177            4 TARFIKCVTVGDGAVGKTCMLISYT   28 (197)
Q Consensus         4 ~~~~~ki~vvG~~~~GKstli~~l~   28 (197)
                      ...+.-|+++|++||||||.+-+|-
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456779999999999999986654