Citrus Sinensis ID: 029178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESRA
Secondary Structure (PSIPRED)
cEEEEEcccHHHHHHHcccccccHHHHHHHHccccccccccccHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHHHcccHHHHHHccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEHHHcccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHccHHHHHHccHHHHHHccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIFTLMMNQTLQVwidcepgtknccYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLsgtmnsqpvnsdppkpkLEAAKLARKSVaveapepeskriavpaskkkdqqkaeTSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDlkalgipmgprKKILLALESRA
Flexible Loop (DISEMBL)
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQKKslqqvsqsgkghlsgVRDLREKLSgtmnsqpvnsdppkPKLEAAKLARKsvaveapepeskriavpaskkkdqqkaetsvdgflrslgLEKYSITFQAEEVDMTALLHMTDEDlkalgipmgpRKKILLALESRA
Low Complexity Region (SEG)
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRlklqkkslqqvsqsGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESRA
Disordered region (IsUnstruct)
*IFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKL************************************************************************************GFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMG***KIL*******
Disordered Region (DISOPRED)
MIFTL**NQTLQVWIDCEPGTKNCCYSWMQLISSLI******************************************************************************************************ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES**
Disordered Region (DISEMBL)
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQ*****************VRDLREKLSG*************PKLE*************************************VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESRA
Disordered Region (DISPRO)
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQK******************************************************************************TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFTLMMNQTLQVWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
Q6NZC7	998	SEC23-interacting protein	yes	no	0.248	0.049	0.510	1e-06
Q9Y6Y8	1000	SEC23-interacting protein	yes	no	0.248	0.049	0.510	2e-06
Q68DC2	871	Ankyrin repeat and SAM do	no	no	0.279	0.063	0.5	4e-06
Q5U4T7	970	Protein bicaudal C homolo	N/A	no	0.248	0.050	0.48	9e-06
P0C0T2	885	Ankyrin repeat and SAM do	no	no	0.279	0.062	0.482	9e-06
Q99MQ1	977	Protein bicaudal C homolo	no	no	0.248	0.050	0.48	9e-06
Q495M9	461	Usher syndrome type-1G pr	no	no	0.294	0.125	0.423	9e-06
Q9IA00	963	Protein bicaudal C homolo	N/A	no	0.248	0.050	0.48	9e-06
Q9H694	974	Protein bicaudal C homolo	no	no	0.228	0.046	0.521	9e-06
Q6GQX6	883	Ankyrin repeat and SAM do	no	no	0.279	0.062	0.482	9e-06

>sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus GN=Sec23ip PE=1 SV=2

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKI 189
           ++ G L +L L  Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI
Sbjct: 644 TLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKI 692

Plays a role in the organization of endoplasmic reticulum exit sites.
Mus musculus (taxid: 10090)

>sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein OS=Homo sapiens GN=SEC23IP PE=1 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALE 194
           L +L L +Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI   +E
Sbjct: 653 LEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIANFVE 701

Plays a role in the organization of endoplasmic reticulum exit sites.

Homo sapiens (taxid: 9606)

>sp|Q68DC2|ANKS6_HUMAN Ankyrin repeat and SAM domain-containing protein 6 OS=Homo sapiens GN=ANKS6 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLAL 193
           E  + G L+ L LEKY   F+ +EVDM A L +TD DLK LGI   G R++IL A+
Sbjct: 775 EDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGSRQQILAAI 830

Required for renal function.

Homo sapiens (taxid: 9606)

>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLAL 193
               LGL KY+  FQ +E+D+   L +TD+DLK LGI   G R+K+LLA+
Sbjct: 877 LFSKLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAI 926

Putative RNA-binding protein. May be involved in regulating gene expression during embryonic development. Seems to be involved in endoderm formation. Ectopic expression results in endoderm formation in the absence of mesoderm induction.

Xenopus laevis (taxid: 8355)

>sp|P0C0T2|ANKS6_RAT Ankyrin repeat and SAM domain-containing protein 6 OS=Rattus norvegicus GN=Anks6 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLAL 193
           E  + G L+ L LEKY   F+ +EVDM A L +TD DL+ LGI   G R++IL A+
Sbjct: 775 EDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLQELGIKTDGSRQQILAAI 830

Required for renal function.

Rattus norvegicus (taxid: 10116)

>sp|Q99MQ1|BICC1_MOUSE Protein bicaudal C homolog 1 OS=Mus musculus GN=Bicc1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLAL 193
               LGL KY+  FQ +E+D+   L +TD+DLK LGI   G R+K+LLA+
Sbjct: 883 LFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAI 932

Putative RNA-binding protein. May be involved in regulating gene expression during embryonic development.

Mus musculus (taxid: 10090)

>sp|Q495M9|USH1G_HUMAN Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 139 ETS-VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           ETS ++ FL SL +E ++   + E++D+ AL+  +D DL+++ +P+GPRKKIL A+  R
Sbjct: 388 ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPRKKILGAVRRR 446

Required for normal development and maintenance of cochlear hair cell bundles. Anchoring/scaffolding protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.

Homo sapiens (taxid: 9606)

>sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A OS=Xenopus laevis GN=bicc1-a PE=2 SV=1

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLAL 193
               LGL KY+  FQ +E+D+   L +TD+DLK LGI   G R+K+LLA+
Sbjct: 870 LFSKLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGISTFGARRKMLLAI 919

Putative RNA-binding protein. May be involved in regulating gene expression during embryonic development. Seems to be involved in endoderm formation. Ectopic expression results in endoderm formation in the absence of mesoderm induction.

Xenopus laevis (taxid: 8355)

>sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1 OS=Homo sapiens GN=BICC1 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 149 LGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLAL 193
           LGL KY+  FQ +E+D+   L +TD+DLK LGI   G R+K+LLA+
Sbjct: 885 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAI 930

Putative RNA-binding protein. Acts as a negative regulator of Wnt signaling. May be involved in regulating gene expression during embryonic development.

Homo sapiens (taxid: 9606)

>sp|Q6GQX6|ANKS6_MOUSE Ankyrin repeat and SAM domain-containing protein 6 OS=Mus musculus GN=Anks6 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLAL 193
           E  + G L+ L LEKY   F+ +EVDM A L +TD DL+ LGI   G R++IL A+
Sbjct: 773 EDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLQELGIKTDGSRQQILAAI 828

Required for renal function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
225463868	211	PREDICTED: uncharacterized protein LOC10	0.766	0.715	0.753	3e-55
224065393	193	predicted protein [Populus trichocarpa]	0.680	0.694	0.716	2e-49
449443732	205	PREDICTED: uncharacterized protein LOC10	0.756	0.726	0.686	3e-49
255560107	207	transferase, transferring glycosyl group	0.695	0.661	0.729	2e-48
147863987	247	hypothetical protein VITISV_011025 [Viti	0.822	0.655	0.632	5e-48
388517741	206	unknown [Lotus japonicus]	0.796	0.762	0.635	1e-43
297829266	203	sterile alpha motif domain-containing pr	0.730	0.709	0.66	2e-43
388500468	206	unknown [Lotus japonicus]	0.796	0.762	0.628	2e-43
388516157	206	unknown [Medicago truncatula]	0.736	0.703	0.666	9e-43
351723645	205	uncharacterized protein LOC100527300 [Gl	0.756	0.726	0.635	9e-43

>gi|225463868|ref|XP_002267796.1| PREDICTED: uncharacterized protein LOC100246803 [Vitis vinifera] gi|296081056|emb|CBI18337.3| unnamed protein product [Vitis vinifera]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 130/154 (84%), Gaps = 3/154 (1%)

Query: 47  DRIVGVRDLRLKLQKKSLQQVSQSGKGHLSG-VRDLREKLSGTMNSQPVNSDPPK--PKL 103
           +R VG RDLRLKLQKK  QQV  SGKG LSG VRDLREKLSGTM+SQPVN+DPPK  P +
Sbjct: 58  NRKVGARDLRLKLQKKVGQQVPLSGKGSLSGGVRDLREKLSGTMHSQPVNNDPPKAKPAM 117

Query: 104 EAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEV 163
           EA K  RK+VAVEAP   +K++A    + K QQKA+TSVDGFL+SLGLEKY ITFQAEEV
Sbjct: 118 EAGKPTRKNVAVEAPVSGTKKVASQVPRNKTQQKADTSVDGFLQSLGLEKYLITFQAEEV 177

Query: 164 DMTALLHMTDEDLKALGIPMGPRKKILLALESRA 197
           DMTAL+HMTDEDLKA+GIPMGPRKKILLALES+A
Sbjct: 178 DMTALIHMTDEDLKAMGIPMGPRKKILLALESKA 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065393|ref|XP_002301795.1| predicted protein [Populus trichocarpa] gi|222843521|gb|EEE81068.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 115/148 (77%), Gaps = 14/148 (9%)

Query: 50  VGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLA 109
           +  RDLRLKLQ+KS QQ S       SGVRDLREKLSGTMNSQP N DPPKPK+  AK A
Sbjct: 60  IDARDLRLKLQRKSFQQASPR-----SGVRDLREKLSGTMNSQPANVDPPKPKIAVAKPA 114

Query: 110 RKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALL 169
           R+SVAVEAPEPE K+ A            ++SVDGFL+SLGLEKY ITFQAEEVDMTAL+
Sbjct: 115 RRSVAVEAPEPEIKKTA---------NVTDSSVDGFLQSLGLEKYLITFQAEEVDMTALV 165

Query: 170 HMTDEDLKALGIPMGPRKKILLALESRA 197
           HM DEDLKALGIPMGPRKKILLALESR 
Sbjct: 166 HMNDEDLKALGIPMGPRKKILLALESRG 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443732|ref|XP_004139631.1| PREDICTED: uncharacterized protein LOC101202907 [Cucumis sativus] gi|449475399|ref|XP_004154441.1| PREDICTED: uncharacterized LOC101202907 [Cucumis sativus]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 121/153 (79%), Gaps = 4/153 (2%)

Query: 45  CEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLE 104
             +R VG RDLRLKLQKKS QQ   SG    SGVRDLREKLSGTM  Q  N+DPPKPKLE
Sbjct: 55  TSNRRVGARDLRLKLQKKSQQQ---SGNAPFSGVRDLREKLSGTMKPQAANNDPPKPKLE 111

Query: 105 AAKLARKSVAVEAPEPESKR-IAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEV 163
             K  RK+ A+EA    +++ +A  A++KK  QK++TSVD FL+SLGLEKYSITFQAEEV
Sbjct: 112 VTKAPRKNDAIEAHTSSTQKAVAKSATRKKAAQKSDTSVDDFLQSLGLEKYSITFQAEEV 171

Query: 164 DMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           DMTAL+HM D+DLKALG+PMGPRKKILLALESR
Sbjct: 172 DMTALVHMGDDDLKALGVPMGPRKKILLALESR 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560107|ref|XP_002521071.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223539640|gb|EEF41222.1| transferase, transferring glycosyl groups, putative [Ricinus communis]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 116/137 (84%)

Query: 47  DRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAA 106
           +R V  +DLRLKLQKKS  Q SQS KG +SG+RDLREKLSGTMNSQP+N DPPK KLEAA
Sbjct: 57  NRKVSGQDLRLKLQKKSHPQASQSIKGTVSGMRDLREKLSGTMNSQPLNVDPPKRKLEAA 116

Query: 107 KLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMT 166
           K AR+S AVE PEPE K++A  AS++K QQK +TS++GFL+SLGLEKY ITFQ EEVDMT
Sbjct: 117 KPARRSAAVEVPEPEIKKVAAMASRRKSQQKGDTSLEGFLQSLGLEKYLITFQVEEVDMT 176

Query: 167 ALLHMTDEDLKALGIPM 183
           AL+HM+DEDLK LGIPM
Sbjct: 177 ALVHMSDEDLKVLGIPM 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863987|emb|CAN78377.1| hypothetical protein VITISV_011025 [Vitis vinifera]

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 126/174 (72%), Gaps = 12/174 (6%)

Query: 13  VWIDCEPGTKNCCYSWMQLISSLIGFDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGK 72
           ++ D E    N     +    S +    VLMACEDR VG RDLRLKLQKK  QQV  SGK
Sbjct: 75  LYEDGETQISNIAVFILHETRSPLYVFNVLMACEDRKVGARDLRLKLQKKVGQQVPLSGK 134

Query: 73  GHLSG-VRDLREKLSGTMNSQPVNSDPPK--PKLEAAKLARKSVAVEAPEPESKRIAVPA 129
           G LSG VRDLREKLSGTM+SQPVN+DPPK  P +EA K  RK+VAVEAP   +K++A   
Sbjct: 135 GSLSGGVRDLREKLSGTMHSQPVNNDPPKAKPAMEAGKPTRKNVAVEAPVSGTKKVA--- 191

Query: 130 SKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM 183
                  +A+TSVDGFL+SLGLEKY ITFQAEEVDMTAL+HMTDEDLKA+GIPM
Sbjct: 192 ------SQADTSVDGFLQSLGLEKYLITFQAEEVDMTALIHMTDEDLKAMGIPM 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517741|gb|AFK46932.1| unknown [Lotus japonicus]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 38  FDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSD 97
           +D       +R V  +DLR KLQKK LQ  + SGK  +  +RDLRE+LSGTM +QP NSD
Sbjct: 49  YDNDEPRITNRKVTAQDLRHKLQKKGLQPAAPSGKSSVPNMRDLRERLSGTMTAQPKNSD 108

Query: 98  PPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSIT 157
           PPK K+   K + KSV VEAP  + KR   PA K    +KAETSVD FL+SLGLEKY I+
Sbjct: 109 PPKSKV-MGKPSNKSVGVEAPAAKIKRSTNPAPKTL-ARKAETSVDEFLQSLGLEKYLIS 166

Query: 158 FQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           FQAEEVDMTAL HMTDEDLKA+GIPMGPRKKILLALES+
Sbjct: 167 FQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESK 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829266|ref|XP_002882515.1| sterile alpha motif domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328355|gb|EFH58774.1| sterile alpha motif domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/150 (66%), Positives = 117/150 (78%), Gaps = 6/150 (4%)

Query: 47  DRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAA 106
           +R V  RDLRLKLQK+    VSQSG+   SGVRDLREKLSGTMN QP NSD PKPK+EAA
Sbjct: 59  NRRVDPRDLRLKLQKR--HHVSQSGREAGSGVRDLREKLSGTMNLQPKNSDAPKPKVEAA 116

Query: 107 KLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMT 166
           + + KSVA E    E+++ +  A++KK QQ A++SVD FL SLGLEKYS  FQ EEVDM 
Sbjct: 117 RPSMKSVATET---ETRKTSTQATRKKSQQ-ADSSVDSFLESLGLEKYSTAFQVEEVDMD 172

Query: 167 ALLHMTDEDLKALGIPMGPRKKILLALESR 196
           AL+HMTD+DLKA+ IPMGPRKKILLAL S+
Sbjct: 173 ALMHMTDDDLKAMLIPMGPRKKILLALGSK 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500468|gb|AFK38300.1| unknown [Lotus japonicus]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 38  FDCVLMACEDRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSD 97
           +D       +R V  +DLR KLQKK LQ  + SGK  +  +RDLRE+LSGTM +QP NSD
Sbjct: 49  YDNDEPRITNRKVTAQDLRHKLQKKGLQPAAPSGKSSVPNMRDLRERLSGTMTAQPKNSD 108

Query: 98  PPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSIT 157
           PPK K+   K + KSV VEAP  + +R   PA K    +KAETSVD FL+SLGLEKY I+
Sbjct: 109 PPKSKV-MGKPSNKSVGVEAPAAKIRRSTNPAPKTL-ARKAETSVDEFLQSLGLEKYLIS 166

Query: 158 FQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           FQAEEVDMTAL HMTDEDLKA+GIPMGPRKKILLALES+
Sbjct: 167 FQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESK 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516157|gb|AFK46140.1| unknown [Medicago truncatula]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/150 (66%), Positives = 114/150 (76%), Gaps = 5/150 (3%)

Query: 47  DRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAA 106
           +R V  +DLR+KLQKK LQ  ++SGK      RDLRE+LSGTMN+QP NSDPPK K+  A
Sbjct: 61  NRKVTGQDLRVKLQKKGLQPATRSGKSSTPSTRDLRERLSGTMNTQPKNSDPPKSKV-IA 119

Query: 107 KLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMT 166
           K + KSV  EAP    KR A PA KK   +KA T+VD FL +LGLEKY ITFQAEEVDMT
Sbjct: 120 KPSSKSVGAEAPA--VKRPANPAPKK--ARKAGTTVDEFLLTLGLEKYFITFQAEEVDMT 175

Query: 167 ALLHMTDEDLKALGIPMGPRKKILLALESR 196
           AL HMTDEDLK +GIPMGPRKKILLALES+
Sbjct: 176 ALKHMTDEDLKVMGIPMGPRKKILLALESK 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723645|ref|NP_001237798.1| uncharacterized protein LOC100527300 [Glycine max] gi|255632037|gb|ACU16371.1| unknown [Glycine max]

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 47  DRIVGVRDLRLKLQKKSLQQVSQSGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAA 106
           +R V  +DLRLKLQ+K L    Q+GK  + G RDLRE+LSGTM  QP N DPPKPK+ AA
Sbjct: 57  NRKVTAQDLRLKLQRKGLHPGGQTGKSSVHGERDLRERLSGTMTQQPKNYDPPKPKV-AA 115

Query: 107 KLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMT 166
           K + KS+ VE P     R A P  KK   +KA+ S+D FL+SLGLEKY ++FQAEEVDMT
Sbjct: 116 KPSSKSIHVETPAVHINRSANPTPKKL-SRKADASLDDFLQSLGLEKYLLSFQAEEVDMT 174

Query: 167 ALLHMTDEDLKALGIPMGPRKKILLALESRA 197
           AL HMTDEDLKA+GIPMGPRKKILLALES+ 
Sbjct: 175 ALNHMTDEDLKAMGIPMGPRKKILLALESKG 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2098550	203	AT3G07170 [Arabidopsis thalian	0.730	0.709	0.586	3.5e-36
TAIR|locus:2152521	206	AT5G48680 "AT5G48680" [Arabido	0.553	0.529	0.612	5.2e-26
TAIR|locus:2020643	460	AT1G70180 [Arabidopsis thalian	0.279	0.119	0.654	5.1e-15
ZFIN|ZDB-GENE-040704-29	422	anks4b "ankyrin repeat and ste	0.319	0.149	0.468	4.3e-10
UNIPROTKB|F1PQ80	1005	SEC23IP "Uncharacterized prote	0.619	0.121	0.338	6e-09
UNIPROTKB|F5H0L8	789	SEC23IP "SEC23-interacting pro	0.619	0.154	0.338	7.2e-09
ZFIN|ZDB-GENE-030131-5259	977	sec23ip "SEC23 interacting pro	0.588	0.118	0.313	7.4e-09
UNIPROTKB|F1S409	798	SEC23IP "Uncharacterized prote	0.619	0.152	0.338	9.4e-09
UNIPROTKB|Q9Y6Y8	1000	SEC23IP "SEC23-interacting pro	0.619	0.122	0.338	9.8e-09
UNIPROTKB|E1BKW5	1004	SEC23IP "Uncharacterized prote	0.619	0.121	0.330	9.8e-09

TAIR|locus:2098550 AT3G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 88/150 (58%), Positives = 105/150 (70%)

Query:    47 DRIVGVRDLRXXXXXXXXXXXXXXGKGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAA 106
             +R V  RDLR                G  SGVRDLR++LSGTMN QP NSDPPK K EAA
Sbjct:    59 NRRVDPRDLRLKLQKRHHGSQSGREAG--SGVRDLRDQLSGTMNQQPKNSDPPKSKAEAA 116

Query:   107 KLARKSVAVEAPEPESKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMT 166
             + + KSVA E    E+++ +  A++KK QQ A++SVD FL SLGLEKYS  FQ EEVDM 
Sbjct:   117 RPSMKSVATET---ETRKTSSQATRKKSQQ-ADSSVDSFLESLGLEKYSTAFQVEEVDMD 172

Query:   167 ALLHMTDEDLKALGIPMGPRKKILLALESR 196
             AL+HMTD+DLKA+ IPMGPRKKILLAL S+
Sbjct:   173 ALMHMTDDDLKAMLIPMGPRKKILLALGSK 202

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2152521 AT5G48680 "AT5G48680" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 71/116 (61%), Positives = 81/116 (69%)

Query:    78 VRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKKKDQQK 137
             V DLR+KLS T+N Q  NS     K EA + A K V+V   +PE+ R A   + KKD Q+
Sbjct:    93 VADLRDKLSRTVNPQTKNS-----KREAVRPAIKKVSV-GTKPET-RAAPNRATKKDPQQ 145

Query:   138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLAL 193
              + SVD FL SLGLEKYS  FQ EEVDM AL HMTD+DLKAL IPMGPRKKILLAL
Sbjct:   146 NDASVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKALLIPMGPRKKILLAL 201

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020643 AT1G70180 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query:   141 SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES 195
             SVDGFL S+GL KYS+ F+ EEVDMT +  M + DLK L IPMGPRKKIL A+ S
Sbjct:   402 SVDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPMGPRKKILQAIAS 456

GO:0005634 "nucleus" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

ZFIN|ZDB-GENE-040704-29 anks4b "ankyrin repeat and sterile alpha motif domain containing 4B" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query:   134 DQQKAETS-VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLA 192
             ++++ ETS +D FL S+GL  +   F  E +D+ AL+  TDEDLK + I +GPRKKIL A
Sbjct:   344 NEEEEETSHLDSFLASIGLMDFGPVFTREHLDLEALMLCTDEDLKGIRIQLGPRKKILEA 403

Query:   193 LESR 196
                R
Sbjct:   404 SSRR 407

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PQ80 SEC23IP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVN-SDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
             GH  G   L + LS   N + +N S  P P   A  + ++    E   PE  ++ +  S 
Sbjct:   584 GHSLGSLILFDILS---NQKDLNLSKSPGPFAVANGVVKQPHFQEKQIPEEPKLTLDESC 640

Query:   132 KKDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
               D +  E  S+   L +L L +Y   F+ E++DM +LL  T +DLK +GIP+GPRKKI 
Sbjct:   641 DLDIENEEVLSLQETLEALSLSEYVSIFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIA 700

Query:   191 LALESRA 197
               ++ +A
Sbjct:   701 NFVKQKA 707

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F5H0L8 SEC23IP "SEC23-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVN-SDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
             GH  G   L + LS   N + +N S  P P   A  + ++    E   PE  ++ +  S 
Sbjct:   370 GHSLGSLILFDILS---NQKDLNLSKCPGPLAVANGVVKQLHFQEKQMPEEPKLTLDESY 426

Query:   132 KKDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
                 +  E  ++   L +L L +Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI 
Sbjct:   427 DLVVENKEVLTLQETLEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIA 486

Query:   191 LALESRA 197
               +E +A
Sbjct:   487 NFVEHKA 493

GO:0046872 "metal ion binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-030131-5259 sec23ip "SEC23 interacting protein" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 37/118 (31%), Positives = 63/118 (53%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASKK 132
             GH  G   L + LS      P+++ P      A  + + + A E    E   +A    + 
Sbjct:   562 GHSLGSLILFDLLSNQKIGSPISA-PIFNGNSAPNVKQVNSAPEVQAAEVPPVAAVEEEA 620

Query:   133 KDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKI 189
             K++++ ET S+   L ++GL +Y   F+ E++D+ +LL  T +DLK + IP+GPRKK+
Sbjct:   621 KEEEEEETGSLSSVLEAIGLSEYLSIFENEKIDVESLLMCTVDDLKEMSIPLGPRKKL 678

GO:0046872 "metal ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S409 SEC23IP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVN-SDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
             GH  G   L + LS   N + +N S+ P P   A  + ++    E   PE  +  +  S 
Sbjct:   585 GHSLGSLILFDILS---NQKDLNLSNSPGPFAVANGVVKQPHYQEKQIPEEPKPMLDESC 641

Query:   132 KKDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
               D +  E  ++   L +L L  Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI 
Sbjct:   642 DLDVENEEVLTLQETLEALSLSDYVSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIA 701

Query:   191 LALESRA 197
               ++ +A
Sbjct:   702 NFVKHKA 708

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q9Y6Y8 SEC23IP "SEC23-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 43/127 (33%), Positives = 66/127 (51%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVN-SDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
             GH  G   L + LS   N + +N S  P P   A  + ++    E   PE  ++ +  S 
Sbjct:   581 GHSLGSLILFDILS---NQKDLNLSKCPGPLAVANGVVKQLHFQEKQMPEEPKLTLDESY 637

Query:   132 KKDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
                 +  E  ++   L +L L +Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI 
Sbjct:   638 DLVVENKEVLTLQETLEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIA 697

Query:   191 LALESRA 197
               +E +A
Sbjct:   698 NFVEHKA 704

GO:0046872 "metal ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007030 "Golgi organization" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BKW5 SEC23IP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 9.8e-09, P = 9.8e-09
 Identities = 42/127 (33%), Positives = 67/127 (52%)

Query:    73 GHLSGVRDLREKLSGTMNSQPVN-SDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
             GH  G   L + LS   N + ++ S  P P   A  + ++    E   PE  ++ +  S 
Sbjct:   585 GHSLGSLILFDILS---NQKDLSLSKSPVPFAVANGVVKQPHFQEKQIPEEPKLTLDESC 641

Query:   132 KKDQQKAET-SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
               D +  E  ++   L +L L +Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI 
Sbjct:   642 DLDVENEEVLTLQETLEALSLSEYVSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIA 701

Query:   191 LALESRA 197
               ++ +A
Sbjct:   702 NFVKHKA 708

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd09487	56	cd09487, SAM_superfamily, SAM (Sterile alpha motif	6e-17
pfam00536	62	pfam00536, SAM_1, SAM domain (Sterile alpha motif)	4e-15
cd09516	69	cd09516, SAM_sec23ip-like, SAM domain of sec23ip-l	7e-14
cd09517	66	cd09517, SAM_USH1G_HARP, SAM domain of USH1G_HARP	8e-13
cd09520	65	cd09520, SAM_BICC1, SAM domain of BICC1 (bicaudal)	5e-12
cd09584	69	cd09584, SAM_sec23ip, SAM domain of sec23ip	2e-11
cd09585	69	cd09585, SAM_DDHD2, SAM domain of DDHD2	9e-11
cd09518	65	cd09518, SAM_ANKS6, SAM domain of ANKS6 (or SamCys	3e-10
smart00454	68	smart00454, SAM, Sterile alpha motif	4e-10
cd09587	67	cd09587, SAM_HARP, SAM domain of HARP subfamily	4e-10
cd09586	66	cd09586, SAM_USH1G, SAM domain of USH1G	7e-10
cd09524	66	cd09524, SAM_tankyrase1,2, SAM domain of tankyrase	2e-08
pfam07647	66	pfam07647, SAM_2, SAM domain (Sterile alpha motif)	7e-08
cd09519	64	cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily	8e-07
cd09497	66	cd09497, SAM_caskin1,2_repeat1, SAM domain of cask	2e-06
cd09533	58	cd09533, SAM_Ste50-like_fungal, SAM domain of Ste5	2e-06
cd09521	64	cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily	1e-05
cd09505	72	cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins	1e-05
cd09490	63	cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (a	3e-05
cd09534	62	cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fun	3e-05
cd09488	61	cd09488, SAM_EPH-R, SAM domain of EPH family of ty	3e-05
cd09509	64	cd09509, SAM_Polycomb, SAM domain of Polycomb grou	2e-04
cd09503	65	cd09503, SAM_tumor-p63,p73, SAM domain of tumor-p6	3e-04
cd09583	69	cd09583, SAM_Atherin-like, SAM domain of Atherin/A	4e-04
cd09557	63	cd09557, SAM_Smaug, SAM domain of Smaug subfamily	0.001
cd09523	65	cd09523, SAM_TAL, SAM domain of TAL subfamily	0.002
cd09512	70	cd09512, SAM_Neurabin-like, SAM domain of SAM_Neur	0.002
cd09556	69	cd09556, SAM_VTS1_fungal, SAM domain of VTS1 RNA-b	0.003
cd09506	66	cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3	0.004
cd09582	66	cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-l	0.004

>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif )

 Score = 70.7 bits (174), Expect = 6e-17
 Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            V  +L SLGLE+Y+  F+  E+D  ALL +TDEDLK LGI   G RKKIL A++
Sbjct: 1   DVAEWLESLGLEQYADLFRKNEIDGDALLLLTDEDLKELGITSPGHRKKILRAIQ 55

SAM (Sterile Alpha Motif) domain is a module consisting of approximately 70 amino acids. This domain is found in the Fungi/Metazoa group and in a restricted number of bacteria. Proteins with SAM domains are represented by a wide variety of domain architectures and have different intracellular localization, including nucleus, cytoplasm and membranes. SAM domains have diverse functions. They can interact with proteins, RNAs and membrane lipids, contain site of phosphorylation and/or kinase docking site, and play a role in protein homo and hetero dimerization/oligomerization in processes ranging from signal transduction to regulation of transcription. Mutations in SAM domains have been linked to several diseases. Length = 56

>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif)

 Score = 66.5 bits (163), Expect = 4e-15
 Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            V  +L S+GL +Y+  F+A  +D  ALL +T+EDL  LG+   G RKKIL +++
Sbjct: 5   DVGEWLESIGLGQYADNFRAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQ 59

It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains. Length = 62

>gnl|CDD|188915 cd09516, SAM_sec23ip-like, SAM domain of sec23ip-like subfamily

 Score = 63.2 bits (154), Expect = 7e-14
 Identities = 27/64 (42%), Positives = 44/64 (68%)

Query: 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLAL 193
           ++Q+   +++  L  LGL +Y  TF+ E++DM +LL  ++ DLK +GIPMGPRKK+L  L
Sbjct: 4   EEQEEPLTLEEDLEKLGLSEYFDTFEKEKIDMESLLLCSESDLKEMGIPMGPRKKLLGFL 63

Query: 194 ESRA 197
           + + 
Sbjct: 64  KDQK 67

SAM (sterile alpha motif) domain of Sec23ip-like (Sec23 interacting protein) subfamily is a potential protein-protein interaction domain. This group of proteins includes Sec23ip and DDHD2 proteins. All of them contain at least two domains: a SAM domain and a predicted metal-binding domain. For mammalian DDHD2 members of this group, phospholipase activity has been demonstrated. Sec23ip proteins of this group interact with Sec23 proteins via an N-terminal proline-rich region. Members of this subfamily are involved in organization of ER/Golgi intermediate compartment. Length = 69

>gnl|CDD|188916 cd09517, SAM_USH1G_HARP, SAM domain of USH1G_HARP family

 Score = 60.4 bits (147), Expect = 8e-13
 Identities = 25/52 (48%), Positives = 39/52 (75%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           FL S  LE+Y   F+ E++D+ AL+ +TDEDL++L +P+GPR+K+L A+  R
Sbjct: 8   FLTSNHLEEYLPVFEREKIDLEALMLLTDEDLQSLKLPLGPRRKLLNAIAKR 59

SAM (sterile alpha motif) domain of USH1G/HARP (Usher syndrome type-1G/ Harmonin-interacting Ankyrin Repeat-containing protein) family is a protein-protein interaction domain. Members of this family have an N-terminal ankyrin repeat region and a C-terminal SAM domain. In mammals these proteins can interact via the SAM domain with the PDZ domain of harmonin to form a scaffolding complex that facilitates signal transduction in epithelial and inner ear sensory cells. It was suggested that USH1G and HARP can be tissue specific partners of harmonin. Mutations in ush1g genes lead to Usher syndrome type 1G. This syndrome is the cause of deaf-blindness in humans. Length = 66

>gnl|CDD|188919 cd09520, SAM_BICC1, SAM domain of BICC1 (bicaudal) subfamily

 Score = 58.5 bits (142), Expect = 5e-12
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLAL 193
           L  LGLEKY   F  +E+D+   L +TD+DLK LGI   G R+K+LLA+
Sbjct: 11  LAKLGLEKYIDLFAQQEIDLQTFLTLTDQDLKELGITAFGARRKMLLAI 59

SAM (sterile alpha motif) domain of BICC1 (bicaudal) subfamily is a protein-protein interaction domain. Proteins of this group have N-terminal K homology RNA-binding vigilin-like repeats and a C-terminal SAM domain. BICC1 is involved in the regulation of embryonic differentiation. It plays a role in the regulation of Dvl (Dishevelled) signaling, particularly in the correct cilia orientation and nodal flow generation. In Drosophila, disruption of BICC1 can disturb the normal migration direction of the anterior follicle cell of oocytes; the specific function of SAM is to recruit whole protein to the periphery of P-bodies. In mammals, mutations in this gene are associated with polycystic kidney disease and it was suggested that the BICC1 protein can indirectly interact with ANKS6 protein (ANKS6 is also associated with polycystic kidney disease) through some protein and RNA intermediates. Length = 65

>gnl|CDD|188983 cd09584, SAM_sec23ip, SAM domain of sec23ip

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 26/66 (39%), Positives = 43/66 (65%)

Query: 132 KKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILL 191
             ++++   S+   L +L L +Y  TF+ E++DM +LL  T +DLK +GIP+GPRKKI  
Sbjct: 2   LNEEEEDVPSLQSVLEALSLSEYKSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKIAN 61

Query: 192 ALESRA 197
            ++ +A
Sbjct: 62  FVKEKA 67

SAM (sterile alpha motif) domain of Sec23ip (Sec23 interacting protein) group is a potential protein-protein interaction domain. Sec23ip proteins (also known as p125) contain an N-terminal proline-rich region, a central region containing a SAM domain and a C-terminal region with a predicted metal-binding domain. Sec23ip interacts with Sec23p/Sec24p part of COPII-coated vesicles complex involved in protein transport from the ER to the Golgi apparatus. The proline-rich region plays an essential role in this interaction. Overexpression of Sec23ip leads to disorganization of ER/Golgi intermediate compartment. Length = 69

>gnl|CDD|188984 cd09585, SAM_DDHD2, SAM domain of DDHD2

 Score = 55.1 bits (133), Expect = 9e-11
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 133 KDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLA 192
           K Q    T ++  L+ LGL +Y   F+ E++D+ AL    + DLK LGIP+GPRKKIL  
Sbjct: 4   KSQGDTPT-LEETLKKLGLSEYCDVFEKEKIDLEALALCQERDLKDLGIPLGPRKKILNY 62

Query: 193 LESR 196
           +  R
Sbjct: 63  IRRR 66

SAM (sterile alpha motif) domain of DDHD2 group is a potential protein-protein interaction domain. DDHD2 proteins contain at least two domains:a SAM domain and a predicted metal-binding domain. Phospholipase A1 activity was demonstrated for the mammalian DDHD2 protein. Mutation of the putative catalytic serine resulted in elimination of activity. Unlike SEC23IP, DDHD2 proteins do not have an N-terminal proline-rich region and correspondingly they are not able to interact with Sec23p/Sec24p complex. Overexpression of DDHD2 is the cause of dispersion of ER/Golgi intermediate compartment and dispersion of tethering proteins located in the Golgi region, leading to aggregation in the endoplasmic reticulum. Length = 69

>gnl|CDD|188917 cd09518, SAM_ANKS6, SAM domain of ANKS6 (or SamCystin) subfamily

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLAL 193
           E  + G LR L LEKY   F+ +EVDM A L +TD DLK LGI   GPR++IL A+
Sbjct: 5   EDELSGILRKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGPRQQILAAI 60

SAM (sterile alpha motif) domain of ANKS6 (or SamCystin) subfamily is a potential protein-protein interaction domain. Proteins of this subfamily have N-terminal ankyrin repeats and a C-terminal SAM domain. They are able to form self-associated complexes and both (SAM and ANK) domains play a role in such interactions. Mutations in Anks6 gene are associated with polycystic kidney disease. They cause formation of renal cysts in rodent models. It was suggested that the ANKS6 protein can interact indirectly (through RNA and protein intermediates) with BICC1, another polycystic kidney disease-associated protein. Length = 65

>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTD-EDLKALGI-PMGPRKKILLALE 194
             SV  +L S+GLE+Y+  F+   +D   LL +T  EDLK LGI  +G RKKIL A++
Sbjct: 6   PESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQ 63

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation. Length = 68

>gnl|CDD|188986 cd09587, SAM_HARP, SAM domain of HARP subfamily

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           T ++ FL S  LE++   F  E++D+ AL+  +DEDL+ + + +GPRKKIL A+  R
Sbjct: 3   TPLEVFLSSQHLEEFLPIFMREQIDLEALMLCSDEDLQNIQMQLGPRKKILSAVARR 59

SAM (sterile alpha motif) domain of HARP (Harmonin-interacting Ankyrin Repeat-containing) proteins, also known as ANKS4B, is a protein-protein interaction domain. Proteins of this subfamily have an N-terminal ankyrin repeat region and C-terminal SAM. In mouse epithelial tissues, HARP protein interacts with the PDZ domain of harmonin. This scaffolding complex facilitates signal transduction in epithelia. HARP was found co-expressed with harmonin in a number of epithelial cells including pancreatic ductal epithelium, embryonic epithelia of the lung, kidney, salivary glands, and cochlea. Length = 67

>gnl|CDD|188985 cd09586, SAM_USH1G, SAM domain of USH1G

 Score = 52.9 bits (127), Expect = 7e-10
 Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 139 ETS-VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           +TS ++ FL SL +E++    + E++D+ ALL  +D DLK++ IP+GPRKKIL A + R
Sbjct: 1   DTSPLEVFLASLSMEEFIAILKREKIDLDALLLCSDNDLKSIHIPLGPRKKILDACQRR 59

SAM (sterile alpha motif) domain of USH1G (Usher syndrome type-1G protein) proteins (also known as SANS) is a putative protein-protein interaction domain. Members of this group have an N-terminal ankyrin repeat region and C-terminal SAM domain. USH1G is expressed in the hair bundles of the inner ear sensory cells. It can form a functional network with USH1B (myosin VIIa), USH1C (harmonin b), USH1F (protocadherin-related 15), and USH1D (cadherin 23). The SAM domain of the USH1G protein is involved in synergetic interactions with the PDZ domain of harmonin. Such interactions contribute to the stability of harmonin. The network is required for the correct cohesion of the hair bundle. Mutations in the ush1g gene lead to Usher syndrome type 1G. This syndrome is the cause of deaf-blindness in humans. Length = 66

>gnl|CDD|188923 cd09524, SAM_tankyrase1,2, SAM domain of tankyrase1,2 subfamily

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           + S+  FL SLGLE     F+ E++ +  L  M  E+LK +GI   G R K++  +E
Sbjct: 5   DFSISQFLSSLGLEHLREIFEREQITLDVLAEMGHEELKEIGINAYGHRHKLIKGVE 61

SAM (sterile alpha motif) domain of Tankyrase1,2 subfamily is a protein-protein interaction domain. In addition to the SAM domain, proteins of this group have ankyrin repeats and a ADP- ribosyltransferase (poly-(ADP-ribose) synthase) domain. Tankyrases can polymerize through their SAM domains forming homoligomers and these complexes are disrupted by autoribosylation. Tankyrases apparently act as master scaffolding proteins and thus may interact simultaneously with multiple proteins, in particular with TRF1, NuMA, IRAP and Grb14 (ankyrin repeats are involved in these interactions). Tankyrases participate in a variety of cell signaling pathways as effector molecules. Their functions are different depending on the intracellular location: at telomeres they play a role in the regulation of telomere length via control of telomerase access to telomeres, at centrosomes they promote spindle assembly/disassembly, in Golgi vesicles they participate in the regulation of vesicle trafficking and Golgi dynamics. Tankyrase 1 may be of interest as new potential target for telomerase-directed cancer therapy. Length = 66

>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif)

 Score = 47.3 bits (113), Expect = 7e-08
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES 195
            V  +LRS+GL +Y+  F+ + +     LL +T+EDLKALGI  +G RKKIL  ++ 
Sbjct: 8   DVAEWLRSIGLPQYADNFRDQGITGGELLLRLTEEDLKALGITSVGHRKKILKKIQR 64

Length = 66

>gnl|CDD|188918 cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLAL 193
            L  +G  KY   F+ +++D+   L +T+ DLK +GI   GP++K+  A+
Sbjct: 10  LLEQIGCSKYLPIFEEQDIDLRIFLTLTESDLKEIGITLFGPKRKMTSAI 59

SAM (sterile alpha motif) domain of ANKS3 subfamily is a potential protein-protein interaction domain. Proteins of this subfamily have N-terminal ankyrin repeats and a C-terminal SAM domain. SAM is a widespread domain in signaling proteins. In many cases it mediates homo-dimerization/oligomerization. Length = 64

>gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein repeat 1

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGP--RKKIL 190
           LR  GLE+Y+  F     D+  +  MT EDL A+GI   P  RKK+ 
Sbjct: 11  LREFGLEEYTPNFIKAGYDLPTISRMTPEDLTAIGI-TKPGHRKKLK 56

SAM (sterile alpha motif) domain repeat 1 of caskin1,2 proteins is a protein-protein interaction domain. Caskin has two tandem SAM domains. Caskin protein is known to interact with membrane-associated guanylate kinase CASK, and apparently may play a role in neural development, synaptic protein targeting, and regulation of gene expression. Length = 66

>gnl|CDD|188932 cd09533, SAM_Ste50-like_fungal, SAM domain of Ste50_like (ubc2) subfamily

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLA 192
           V  +L SLGL +Y   F    +    L+ +  EDLK +GI  +G R  IL A
Sbjct: 2   VADWLSSLGLPQYEDQFIENGITGDVLVALDHEDLKEMGITSVGHRLTILKA 53

SAM (sterile alpha motif) domain of Ste50-like (or Ubc2 for Ustilago bypass of cyclase) subfamily is a putative protein-protein interaction domain. This group includes only fungal proteins. Basidiomycetes have an N-terminal SAM domain, central UBQ domain, and C-terminal SH3 domain, while Ascomycetes lack the SH3 domain. Ubc2 of Ustilago maydis is a major virulence and maize pathogenicity factor. It is required for filamentous growth (the budding haploid form of Ustilago maydis is a saprophyte, while filamentous dikaryotic form is a pathogen). Also the Ubc2 protein is involved in the pheromone-responsive morphogenesis via the MAP kinase cascade. The SAM domain is necessary for ubc2 function; deletion of SAM eliminates this function. A Lys-to-Glu mutation in the SAM domain of ubc2 gene induces temperature sensitivity. Length = 58

>gnl|CDD|188920 cd09521, SAM_ASZ1, SAM domain of ASZ1 subfamily

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194
           FL  L L   +  F+  +V  + LL MT+EDL+ +GI   G +KKIL A++
Sbjct: 11  FLHGLELGHLTPLFKEHDVTFSQLLKMTEEDLEKIGITQPGDQKKILDAIK 61

SAM (sterile alpha motif) domain of ASZ1 (Ankyrin, SAM, leucine Zipper) also known as GASZ (Germ cell-specific Ankyrin, SAM, leucine Zipper) subfamily is a potential protein-protein interaction domain. Proteins of this group are involved in the repression of transposable elements during spermatogenesis, oogenesis, and preimplantation embryogenesis. They support synthesis of PIWI-interacting RNA via association with some PIWI proteins, such as MILI and MIWI. This association is required for initiation and maintenance of retrotransposon repression during the meiosis. In mice lacking ASZ1, DNA damage and delayed germ cell maturation was observed due to retrotransposons releasing from their repressed state. Length = 64

>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDL-KALGI-PMGPRKKILLALE 194
           LRS+GLE+Y   F+A  +D   LL++T E L K L I  +G R KIL  +E
Sbjct: 14  LRSIGLEQYVEVFRANNIDGKELLNLTKESLSKDLKIESLGHRNKILRKIE 64

SAM (sterile alpha motif) domain of WDSUB1 subfamily proteins is a putative protein-protein interaction domain. Proteins of this group contain multiple domains: SAM, one or more WD40 repeats and U-box (derived version of the RING-finger domain). Apparently the WDSUB1 subfamily proteins participate in protein degradation through ubiquitination, since U-box domain are known as a member of E3 ubiquitin ligase family, while SAM and WD40 domains most probably are responsible for an E2 ubiquitin-conjugating enzyme binding and a target protein binding. Length = 72

>gnl|CDD|188889 cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           A+  +  +L S+ LE+Y   F +   V  T    + D  LK +GI P G R++IL  L 
Sbjct: 2   ADLDIAEWLASIHLEQYLDLFREHGYVTATDCQGINDSRLKQIGISPTGHRRRILKQLP 60

SAM (sterile alpha motif) domain of Arap1,2,3 subfamily proteins (angiotensin receptor-associated) is a protein-protein interaction domain. Arap1,2,3 proteins are phosphatidylinositol-3,4,5-trisphosphate-dependent GTPase-activating proteins. They are involved in phosphatidylinositol-3 kinase (PI3K) signaling pathways. In addition to SAM domain, Arap1,2,3 proteins contain ArfGap, PH-like, RhoGAP and UBQ domains. SAM domain of Arap3 protein was shown to interact with SAM domain of Ship2 phosphatidylinositol-trisphosphate phosphatase proteins. Such interaction apparently plays a role in inhibition of PI3K regulated pathways since Ship2 converts PI(3,4,5)P3 into PI(3,4)P2. Proteins of this subfamily participate in regulation of signaling and trafficking associated with a number of different receptors (including EGFR, TRAIL-R1/DR4, TRAIL-R2/DR5) in normal and cancer cells; they are involved in regulation of actin cytoskeleton remodeling, cell spreading and formation of lamellipodia. Length = 63

>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM-GPRKKILLALES 195
           E  V+ +L  L   +Y   F+   +    LL +  E LK LGI   G R ++L A++S
Sbjct: 3   EEFVEEWLNELNCGQYLDIFEKNLITGDLLLELDKEALKELGITKVGDRIRLLRAIKS 60

SAM (sterile alpha motif) domain of Ste11 subfamily is a protein-protein interaction domain. Proteins of this subfamily have SAM domain at the N-terminus and protein kinase domain at the C-terminus. They participate in regulation of mating pheromone response, invasive growth and high osmolarity growth response. MAP triple kinase Ste11 from S.cerevisia is known to interact with Ste20 kinase and Ste50 regulator. These kinases are able to form homodimers interacting through their SAM domains as well as heterodimers or heterogenous complexes when either SAM domain of monomeric or homodimeric form of Ste11 interacts with Ste50 regulator. Length = 62

>gnl|CDD|188887 cd09488, SAM_EPH-R, SAM domain of EPH family of tyrosine kinase receptors

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 140 TSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGIPM-GPRKKIL 190
            SV  +L S+ + +Y   F  A    + A+  MT EDL  LG+ + G +KKIL
Sbjct: 3   RSVGEWLESIKMGRYKENFTAAGYTSLDAVAQMTAEDLTRLGVTLVGHQKKIL 55

SAM (sterile alpha motif) domain of EPH (erythropoietin-producing hepatocyte) family of receptor tyrosine kinases is a C-terminal signal transduction module located in the cytoplasmic region of these receptors. SAM appears to mediate cell-cell initiated signal transduction via binding proteins to a conserved tyrosine that is phosphorylated. In some cases the SAM domain mediates homodimerization/oligomerization and plays a role in the clustering process necessary for signaling. EPH kinases are the largest family of receptor tyrosine kinases. They are classified into two groups based on their abilities to bind ephrin-A and ephrin-B ligands. The EPH receptors are involved in regulation of cell movement, shape, and attachment during embryonic development; they control cell-cell interactions in the vascular, nervous, epithelial, and immune systems, and in many tumors. They are potential molecular markers for cancer diagnostics and potential targets for cancer therapy. Length = 61

>gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 145 FLRSL-GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKI 189
           F++SL G  +Y+  F+ +E+D  ALL +T++DL K +G+ +GP  KI
Sbjct: 12  FIKSLDGCAEYAEVFREQEIDGQALLLLTEDDLLKGMGLKLGPALKI 58

SAM (sterile alpha motif) domain of Polycomb group is a protein-protein interaction domain. The Polycomb group includes transcriptional repressors which are involved in the regulation of some key regulatory genes during development in many organisms. They are best known for silencing Hox (Homeobox) genes. Polycomb proteins work together in large multimeric and chromatin-associated complexes. They organize chromatin of the target genes and maintain repressed states during many cell divisions. Polycomb proteins are classified based on their common function, but not on conserved domains and/or motifs; however many Polycomb proteins (members of PRC1 class complex) contain SAM domains which are more similar to each other inside of the Polycomb group than to SAM domains outside of it. Most information about structure and function of Polycomb SAM domains comes from studies of Ph (Polyhomeotic) and Scm (Sex comb on midleg) proteins. Polycomb SAM domains usually can be found at the C-terminus of the proteins. Some members of this group contain, in addition to the SAM domain, MTB repeats, Zn finger, and/or DUF3588 domains. Polycomb SAM domains can form homo- and/or heterooligomers through ML and EH surfaces. SAM/SAM oligomers apparently play a role in transcriptional repression through polymerization along the chromosome. Polycomb proteins are known to be highly expressed in some cells years before their cancer pathology; thus they are attractive markers for early cancer therapy. Length = 64

>gnl|CDD|188902 cd09503, SAM_tumor-p63,p73, SAM domain of tumor-p63,p73 proteins

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPMGPRKKI 189
            + SV  +L  LG   Y   F  + +  +  L   T EDL A+ IP   R KI
Sbjct: 3   TDNSVASWLTKLGCSNYIDNFHQQGLLSIFQLDEFTLEDLAAMKIPEQHRNKI 55

SAM (sterile alpha motif) domain of p63, p73 transcriptional factors is a putative protein-protein interaction domain and lipid-binding domain. p63 and p73 are homologs to the tumor suppressor p53. They have a C-terminal SAM domain in their longest spliced alpha forms, while p53 doesn't have it. p63 or p73 knockout mice show significant developmental abnormalities but no increased cancer susceptibility, suggesting that p63 and p73 play a role in regulation of normal development. It was shown that SAM domain of p73 is able to bind some membrane lipids. The structural rearrangements in SAM are necessary to accomplish the binding. No evidence for homooligomerization through SAM domains was found for p63/p73 subfamily. It was suggested that the partner proteins should be either more distantly related SAM-containing domain proteins or proteins without the SAM domain. Length = 65

>gnl|CDD|188982 cd09583, SAM_Atherin-like, SAM domain of Atherin/Atherin-like subfamily

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDED-LKALGIPMGPRKKI 189
           V  + ++ G  + +  F+ +E+D  +LL +T  D L  L + +GP  KI
Sbjct: 9   VVQYFKTAGFPEEANAFKEQEIDGKSLLLLTRSDVLTGLSLKLGPALKI 57

SAM (sterile alpha motif) domain of SAM_Atherin and Atherin-like subfamily proteins is a putative protein-protein and/or protein-lipid interaction domain. In addition to the C-terminal SAM domain, the majority of proteins belonging to this group also have PHD (or Zn finger) domain. As potential members of the polycomb group, these proteins may be involved in regulation of some key regulatory genes during development. Atherin can be recruited by Ruk/CIN85 kinase-binding proteins via its SH3 domains thus participating in the signal transferring kinase cascades. Also, atherin was found associated with low density lipids (LDL) in atherosclerotic lesions in human. It was suggested that atherin plays an essential role in atherogenesis via immobilization of LDL in the arterial wall. SAM domains of atherins are predicted to form polymers. Inhibition of polymer formation could be a potential antiatherosclerotic therapy. Length = 69

>gnl|CDD|188956 cd09557, SAM_Smaug, SAM domain of Smaug subfamily

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMT--ALLHMTDEDLKALGIPMGPRKKILLALE 194
             V  +L+SL L KY+  F      MT   +L++T+E L+A G+  G R KI L+++
Sbjct: 7   KDVPAWLKSLRLHKYASLFS----QMTYEEMLNLTEEQLEAQGVTKGARHKIALSIQ 59

SAM (sterile alpha motif) domain of Smaug proteins is an RNA recognition domain. It binds a specific RNA motif known as Smaug recognition element (SRE). Among members of this group are invertebrate Smaug (Smg) proteins and vertebrate Smaug1 and Smaug2 proteins. They are involved in post-transcriptional control during early embryogenesis in animals. In Drosophila, Smaug protein is a translational repressor of mRNA of Nanos (Nos) protein. Gradient of Nanos is required for proper abdominal segmentation. SAM domain interacts specifically with the Nanos mRNA regulatory regions. Moreover, Smaug protein is involved in regulation of specific maternal transcripts degradation in Drosophila early embryo via recruitment of the CCR4/POP2/NOT deadenylase. Length = 63

>gnl|CDD|188922 cd09523, SAM_TAL, SAM domain of TAL subfamily

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALESRA 197
           L  L  E Y   F    + M  L  MTDEDLK +GI  +G RK+IL A +   
Sbjct: 12  LNELSAEHYLPVFARHRITMETLSTMTDEDLKKIGIHEIGLRKEILRAAQELL 64

SAM (sterile alpha motif) domain of TAL (Tsg101-associated ligase) proteins, also known as LRSAM1 (Leucine-rich repeat and sterile alpha motif-containing) proteins, is a putative protein-protein interaction domain. Proteins of this subfamily participate in the regulation of retrovirus budding and receptor endocytosis. They show E3 ubiquitin ligase activity. Human TAL protein interacts with Tsg101 and TAL's C-terminal ring finger domain is essential for the multiple monoubiquitylation of Tsg101. Length = 65

>gnl|CDD|188911 cd09512, SAM_Neurabin-like, SAM domain of SAM_Neurabin-like subfamily

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKIL 190
           L  LGLE+Y   F A  +D   LL +    LKALGI     + +L
Sbjct: 16  LMGLGLEQYIPEFTANNIDGQQLLQLDSSKLKALGITSSSDRSLL 60

SAM (sterile alpha motif) domain of Neurabin-like (Neural actin-binding) subfamily is a putative protein-protein interaction domain. This group currently includes the SAM domains of neurobin-I, SAMD14 and neurobin-I/SAMD14-like proteins. Most are multidomain proteins and in addition to SAM domain they contain other protein-binding domains such as PDZ and actin-binding domains. Members of this subfamily participate in signal transduction. Neurabin-I is involved in the regulation of Ca signaling intensity in alpha-adrenergic receptors; it forms a functional pair of opposing regulators with neurabin-II. Neurabins are expressed almost exclusively in neuronal cells. They are known to interact with protein phosphatase 1 and inhibit its activity; they also can bind actin filaments; however, the exact role of the SAM domain is unclear, since SAM doesn't participate in these interactions. Length = 70

>gnl|CDD|188955 cd09556, SAM_VTS1_fungal, SAM domain of VTS1 RNA-binding proteins

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 146 LRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           LRSL L KY+     +++    L+ + DEDL+  G+  +G R+K+L A E
Sbjct: 13  LRSLRLHKYTDNL--KDLSWKELIELDDEDLEDKGVSALGARRKLLKAFE 60

SAM (sterile alpha motif) domain of VTS1 subfamily proteins is RNA binding domain located in the C-terminal region. SAM interacts with stem-loop structures of mRNA. Proteins of this subfamily participate in regulation of transcript stability and degradation, and also may be involved in vacuolar protein transport regulation. VTS1 protein of S.cerevisiae induces mRNA degradation via the major deadenylation-dependent mRNA decay pathway; VTS1 recruits CCR4/POP2/NOT deadenylase complex to target mRNA. The recruitment is the initial step resulting in poly(A) tail removal transcripts. Potentially SAM domain may be responsible not only for RNA binding but also for deadenylase binding. Length = 69

>gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family proteins

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195
           V  +L SL L ++   F   E+D + L ++  EDL  LG+  +G R  I  AL+ 
Sbjct: 10  VGDWLESLNLGEHRERFMDNEIDGSHLPNLDKEDLTELGVTRVGHRMNIERALKK 64

SAM (sterile alpha motif) domain of Shank1,2,3 family proteins is a protein-protein interaction domain. Shank1,2,3 proteins are scaffold proteins that are known to interact with a variety of cytoplasmic and membrane proteins. SAM domains of the Shank1,2,3 family are prone to homooligomerization. They are highly enriched in the postsynaptic density, acting as scaffolds to organize assembly of postsynaptic proteins. SAM domains of Shank3 proteins can form large sheets of helical fibers. Shank genes show distinct patterns of expression, in rat Shank1 mRNA is found almost exclusively in brain, Shank2 in brain, kidney and liver, and Shank3 in heart, brain and spleen. Length = 66

>gnl|CDD|188981 cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 142 VDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKI 189
           V  F++SL G E+++  F+ E++D  A L +T  DL K LGI +GP  KI
Sbjct: 9   VAEFVQSLPGCEEHAKVFRDEQIDGEAFLLLTQSDLVKILGIKLGPALKI 58

SAM (sterile alpha motif) domain of Scm-like-3MBT3,4 (Sex comb on midleg, Malignant brain tumor) subfamily proteins (also known as L3mbtl3,4 proteins) is a putative protein-protein interaction domain. Proteins of this subfamily are predicted transcriptional regulators belonging to Polycomb group. The majority of them are multidomain proteins: in addition to the C-terminal SAM domain, they contain three MBT repeats and Zn finger domain. Murine L3mbtl3 protein of this subfamily is essential for maturation of myeloid progenitor cells during differentiation. Human L3mbtl4 is a potential tumor suppressor gene in breast cancer, while deregulation of L3MBTL3 is associated with neuroblastoma. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG4374	216	consensus RNA-binding protein Bicaudal-C [RNA proc	99.64
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	99.63
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	99.57
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	99.54
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	99.46
KOG4375	272	consensus Scaffold protein Shank and related SAM d	98.88
KOG4384	361	consensus Uncharacterized SAM domain protein [Gene	98.73
KOG1170	1099	consensus Diacylglycerol kinase [Lipid transport a	98.52
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	98.48
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.4
PF09597	57	IGR: IGR protein motif; InterPro: IPR019083 This e	97.48
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	97.4
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	96.69
KOG4374	216	consensus RNA-binding protein Bicaudal-C [RNA proc	95.31
KOG1738	638	consensus Membrane-associated guanylate kinase-int	94.8
KOG3930	389	consensus Uncharacterized conserved protein [Funct	94.41
PF09235	75	Ste50p-SAM: Ste50p, sterile alpha motif; InterPro:	94.09
KOG3791	569	consensus Predicted RNA-binding protein involved i	93.35
cd08532	76	SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointe	92.03
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	91.86
cd08203	66	SAM_PNT Sterile alpha motif (SAM)/Pointed domain.	91.12
cd08538	78	SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Point	90.09
cd08531	75	SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointe	90.08
cd08541	91	SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed do	89.63
cd08535	68	SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed	89.57
cd08757	68	SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed doma	89.54
cd08533	71	SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed	89.35
cd08540	75	SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed doma	89.07
smart00251	82	SAM_PNT SAM / Pointed domain. A subfamily of the S	88.94
cd08534	89	SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Point	88.21
cd08536	66	SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed doma	87.03
PF02198	84	SAM_PNT: Sterile alpha motif (SAM)/Pointed domain;	87.0
KOG0249	916	consensus LAR-interacting protein and related prot	85.55
cd08543	89	SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed do	85.48
cd08542	88	SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed do	84.81
cd08539	74	SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Point	83.37
PF13543	129	KSR1-SAM: SAM like domain present in kinase suppre	82.7
cd08537	78	SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Point	80.25

>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]

Probab=99.64  E-value=1.1e-16  Score=137.95  Aligned_cols=137  Identities=34%  Similarity=0.339  Sum_probs=99.7

Q ss_pred             CcccCcchhhhhhhhccccccCCCC-CCCCCCccchhhhhcCCCCCCCCCCCCCCchhHhhhhccccccccCCCCccccC
Q 029178           47 DRIVGVRDLRLKLQKKSLQQVSQSG-KGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRI  125 (197)
Q Consensus        47 ~~~~~~~dlr~klq~~~~~~~~~~~-~~~~~~~~DLrekLsg~~~~q~~~~~~pk~~~~~~~~~~~~~~~~ap~~~~~~~  125 (197)
                      .+++|+.|||.|+++.+.-  ++.| .....+|+++++.|||+++++++|+.    ......+...+...+    .....
T Consensus        62 ~~r~~~k~lr~~l~~~~~g--~~~gs~~~~~~v~~s~~~ls~~~~~~~~n~~----~r~f~~pd~~~~~~~----~~~l~  131 (216)
T KOG4374|consen   62 LRRKDPKDLRTRLTNNRSG--FQSGSWRVKKSVRESSDWLSGLTDADPKNSG----FRSFKRPDIQSLLTS----RLGLE  131 (216)
T ss_pred             ccccCchhhcccccccCCC--CCCCcccccchhhhHHHHHhcccCCCccccc----chhhcCCchhhHHHH----hhccc
Confidence            3478899999998877544  4432 44446899999999999999999996    222222222221111    00111


Q ss_pred             CCCCCCcccCCC--------CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          126 AVPASKKKDQQK--------AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       126 ~~~~~rk~~~~W--------~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..-....  .+|        ..+.|..||..+||++|...|..++||++.|.+||++||++|||. .|+|+||++||..
T Consensus       132 s~~~~~~--~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~  208 (216)
T KOG4374|consen  132 SYIKEFN--LQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGK  208 (216)
T ss_pred             ccchhhh--cchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhc
Confidence            1111111  122        368899999999999999999999999999999999999999997 9999999999964

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.63  E-value=4.4e-16  Score=107.37  Aligned_cols=60  Identities=43%  Similarity=0.702  Sum_probs=56.9

Q ss_pred             CCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          136 QKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       136 ~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      .|+..+|.+||+++||++|.+.|.++.||++.|+.||++||++|||+ +|||+||+.+|+.
T Consensus         2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~   62 (64)
T PF00536_consen    2 EWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQK   62 (64)
T ss_dssp             GTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999 7999999999975

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.57  E-value=5.1e-15  Score=102.42  Aligned_cols=61  Identities=41%  Similarity=0.702  Sum_probs=58.7

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCH-HHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDM-TALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDg-daLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|+..+|.+||.++||.+|.+.|.+++||+ +.|..|+++||+++||+ .|||++|+++|++
T Consensus         2 ~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~   64 (66)
T PF07647_consen    2 STWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQE   64 (66)
T ss_dssp             GGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999 99999999999999998 9999999999975

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>cd00166 SAM Sterile alpha motif

Probab=99.54  E-value=1.2e-14  Score=97.78  Aligned_cols=60  Identities=43%  Similarity=0.638  Sum_probs=57.8

Q ss_pred             CCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          136 QKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       136 ~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      .|+..+|.+||+++|+++|.+.|.+++||++.|+.|+++||++|||+ +|||++|+.+|++
T Consensus         1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~   61 (63)
T cd00166           1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK   61 (63)
T ss_pred             CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999 7999999999975

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>smart00454 SAM Sterile alpha motif

Probab=99.46  E-value=1.1e-13  Score=93.52  Aligned_cols=61  Identities=46%  Similarity=0.700  Sum_probs=58.2

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCC-HHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMT-DEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LT-eeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|+..+|.+||..+|+++|.+.|.+++|++..|+.++ ++||++|||. +|||++|+.+|+.
T Consensus         2 ~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~   64 (68)
T smart00454        2 SQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQK   64 (68)
T ss_pred             CCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999 9999999997 9999999999875

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]

Probab=98.88  E-value=3.2e-09  Score=94.38  Aligned_cols=74  Identities=28%  Similarity=0.341  Sum_probs=66.8

Q ss_pred             cccCCCCCCCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          122 SKRIAVPASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       122 ~~~~~~~~~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..-+.+|-.-|..+-|+..+|..||++++|++|.+.|..++||+..|..|+.+|+.++|++ .|||..|-+|++.
T Consensus       195 s~~s~~pF~~Kpl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr~  269 (272)
T KOG4375|consen  195 NNLTYNPFLCKPLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQ  269 (272)
T ss_pred             CCCCCCcccccccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHHH
Confidence            3334455566778999999999999999999999999999999999999999999999999 9999999999874

>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]

Probab=98.73  E-value=1.1e-08  Score=94.02  Aligned_cols=58  Identities=40%  Similarity=0.591  Sum_probs=55.1

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....|++||+.|||++|...|-++++| ++.+..++++||.++||. ++||+|||.+|+.
T Consensus       214 ~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~  273 (361)
T KOG4384|consen  214 HPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVEL  273 (361)
T ss_pred             CchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            667999999999999999999999887 999999999999999998 9999999999874

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]

Probab=98.52  E-value=6e-08  Score=97.03  Aligned_cols=68  Identities=31%  Similarity=0.473  Sum_probs=63.8

Q ss_pred             CCCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHhc
Q 029178          129 ASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALESR  196 (197)
Q Consensus       129 ~~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~~  196 (197)
                      -++.....|+.++|+.||+.++|++|.+.|.+|.|.+..|++|...|||++||. .||-|+|+.+|.+.
T Consensus       990 ~~~a~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl 1058 (1099)
T KOG1170|consen  990 FAFANIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDL 1058 (1099)
T ss_pred             cccccCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHH
Confidence            356677899999999999999999999999999999999999999999999999 99999999999763

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=98.48  E-value=2.1e-07  Score=93.36  Aligned_cols=65  Identities=28%  Similarity=0.457  Sum_probs=58.3

Q ss_pred             CcccCCCCcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          131 KKKDQQKAETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +..+..-...+|.+||++++|++|.++|.+.++ +++.+..|+.+||..+||+ .||+|||+.+|+.
T Consensus       915 ~~~~~~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~  981 (996)
T KOG0196|consen  915 RSGSDFTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA  981 (996)
T ss_pred             CCCCCCcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence            444555577899999999999999999998765 5999999999999999999 9999999999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.40  E-value=2.3e-07  Score=89.59  Aligned_cols=62  Identities=31%  Similarity=0.497  Sum_probs=57.4

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCCcc-hHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIPMG-PRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~lG-pRKKIL~aIq~  195 (197)
                      ...|...+|..|++.+|+++|++.|.++.+|+|.|+.|||+||+ ++|...| |||+.++.++.
T Consensus       462 VPgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqt  525 (832)
T KOG3678|consen  462 VPGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQT  525 (832)
T ss_pred             CCCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            35699999999999999999999999999999999999999999 9999865 99999988764

>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif

Probab=97.48  E-value=0.00013  Score=51.70  Aligned_cols=51  Identities=35%  Similarity=0.567  Sum_probs=45.5

Q ss_pred             HHHHHHhCC--ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          142 VDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       142 V~~wLksLG--L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      |..||..+|  +++|.+.|..   +.+.|...+-.+||++||++-+|+-||.+.+.
T Consensus         1 V~tFL~~IGR~~~~~~~kf~~---~w~~lf~~~s~~LK~~GIp~r~RryiL~~~ek   53 (57)
T PF09597_consen    1 VETFLKLIGRGCEEHAEKFES---DWEKLFTTSSKQLKELGIPVRQRRYILRWREK   53 (57)
T ss_pred             CHHHHHHHcccHHHHHHHHHH---HHHHHHhcCHHHHHHCCCCHHHHHHHHHHHHH
Confidence            578999998  8999999965   56999999999999999999999999988753

Its function is unknown.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=97.40  E-value=0.00027  Score=70.06  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+|..+.|+.||..+||++|.....+.--.+..|+.++..|+. ++||. +=|||||.-++++
T Consensus       547 fa~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~a  610 (861)
T KOG1899|consen  547 FADWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRA  610 (861)
T ss_pred             hhhccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Confidence            68899999999999999999998766655568999999999987 99999 9999999988764

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=96.69  E-value=0.0012  Score=65.58  Aligned_cols=61  Identities=23%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE  194 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq  194 (197)
                      ...|++.-|-.||+.+||-+|.+.|.++.||+-.|..||-+||-+|-|. .-|-.-|-.+|+
T Consensus       620 a~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkVvs~lHhaSlkraIq  681 (861)
T KOG1899|consen  620 ANKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKVVSALHHASLKRAIQ  681 (861)
T ss_pred             ccchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999997 555555555554

>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]

Probab=95.31  E-value=0.0078  Score=52.71  Aligned_cols=60  Identities=32%  Similarity=0.507  Sum_probs=54.3

Q ss_pred             CCCCcchHHHHHHh-CCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178          135 QQKAETSVDGFLRS-LGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE  194 (197)
Q Consensus       135 ~~W~~~~V~~wLks-LGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq  194 (197)
                      .....++..+++.+ ++|+.|...|..++|++..+.++++++|+.+|+. +|.+.+++.+++
T Consensus       113 r~f~~pd~~~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~e  174 (216)
T KOG4374|consen  113 RSFKRPDIQSLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIE  174 (216)
T ss_pred             hhhcCCchhhHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHH
Confidence            44456778888888 9999999999999999999999999999999998 999999998875

>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]

Probab=94.80  E-value=0.022  Score=56.42  Aligned_cols=61  Identities=25%  Similarity=0.442  Sum_probs=57.4

Q ss_pred             cCCCCcchHHHHHHhCC--ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178          134 DQQKAETSVDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE  194 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLG--L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq  194 (197)
                      ...|+...|+.|++.++  |..|...|.++.+.+..|+.++..+|..||+. .||+..|+.+..
T Consensus         4 v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~rrig~qeli~~av~   67 (638)
T KOG1738|consen    4 VETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVRRIGHQELILEAVE   67 (638)
T ss_pred             ccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhhhhhhHHHHHHHHH
Confidence            57899999999999998  89999999999999999999999999999999 999999987764

>KOG3930 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.032  Score=51.90  Aligned_cols=42  Identities=29%  Similarity=0.532  Sum_probs=40.1

Q ss_pred             hhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHH
Q 029178          153 KYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE  194 (197)
Q Consensus       153 kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq  194 (197)
                      .|.-.|..|.|.-+.|+.|+.+-|.||||+ +|+...||+.++
T Consensus        20 ~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K   62 (389)
T KOG3930|consen   20 KYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIK   62 (389)
T ss_pred             hHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHH
Confidence            699999999999999999999999999999 999999998775

>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold

Probab=94.09  E-value=0.017  Score=43.29  Aligned_cols=49  Identities=20%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             cCCCCcchHHHHH-HhCCChh---hHHHHhhcCcCHHHhcCCCHHHHhcCCCC
Q 029178          134 DQQKAETSVDGFL-RSLGLEK---YSITFQAEEVDMTALLHMTDEDLKALGIP  182 (197)
Q Consensus       134 ~~~W~~~~V~~wL-ksLGL~k---Y~~~F~~eeIDgdaLl~LTeeDLKeLGI~  182 (197)
                      ..+|+..+|..|+ .+|++.+   ++..|.+|.|+|+.|..||-+|=|++==.
T Consensus         3 ~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~~   55 (75)
T PF09235_consen    3 FSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCKELCDN   55 (75)
T ss_dssp             TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS
T ss_pred             cccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHHHHcCc
Confidence            4689999999999 5678764   78889999999999999999999986443

It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.

>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=93.35  E-value=0.072  Score=52.39  Aligned_cols=57  Identities=28%  Similarity=0.528  Sum_probs=50.6

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHH
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLAL  193 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aI  193 (197)
                      ..-...++..||+.++|-+|.+.|..  .++++++.+++.+|...||. .|-|+++|++-
T Consensus       471 ~~~~~~~ip~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~g~~~~~L~~~  528 (569)
T KOG3791|consen  471 KNPLRIEIPEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLALGARRKLLKAF  528 (569)
T ss_pred             CccccccchHHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhhhHHHhhhccc
Confidence            33355788899999999999999987  99999999999999999998 99999998753

>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor

Probab=92.03  E-value=0.17  Score=37.51  Aligned_cols=47  Identities=17%  Similarity=0.199  Sum_probs=37.6

Q ss_pred             CCcccCCCCcchHHHHH----HhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcC
Q 029178          130 SKKKDQQKAETSVDGFL----RSLGLEKYSITFQAEEVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeL  179 (197)
                      -+.++..|+...|..||    ++.+|..   .+..=.+||.+|+.||.+|+...
T Consensus         6 ip~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r   56 (76)
T cd08532           6 ISPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRR   56 (76)
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHH
Confidence            35678999999999999    4556766   44444899999999999997753

SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=91.86  E-value=0.14  Score=49.64  Aligned_cols=56  Identities=29%  Similarity=0.410  Sum_probs=48.7

Q ss_pred             CCCCcchHHHHH-HhCCChhhHHHHhhcCcCHHHhcCC--CHHH--HhcCCCC-cchHHHHH
Q 029178          135 QQKAETSVDGFL-RSLGLEKYSITFQAEEVDMTALLHM--TDED--LKALGIP-MGPRKKIL  190 (197)
Q Consensus       135 ~~W~~~~V~~wL-ksLGL~kY~~~F~~eeIDgdaLl~L--TeeD--LKeLGI~-lGpRKKIL  190 (197)
                      -.|+.+.+.+|| ....|.+|.+.|..+.|+|.+|..+  +..|  -+.+||. ..||.||-
T Consensus       133 ~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKlq  194 (575)
T KOG4403|consen  133 HNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKLQ  194 (575)
T ss_pred             hcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhhh
Confidence            579999999999 6779999999999999999999987  4555  3499999 99999974

>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain

Probab=91.12  E-value=0.2  Score=35.71  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=33.9

Q ss_pred             ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      ++..|+...|..||.-    .+|..  ..+..-.+||..|+.||.+|+.+
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~   48 (66)
T cd08203           1 DPRLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLR   48 (66)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHH
Confidence            4678999999999954    45654  23333489999999999999775

Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti

>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators

Probab=90.09  E-value=0.35  Score=36.32  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             CcccCCCCcchHHHHH----HhCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFL----RSLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      .+++..|+...|..||    +.-+|..-...|..=.|||..|+.|+.+|+.+
T Consensus         4 ~~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~   55 (78)
T cd08538           4 SVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIE   55 (78)
T ss_pred             CCCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHH
Confidence            5788999999999999    45566543345555589999999999999765

SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors

Probab=90.08  E-value=0.3  Score=36.10  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=35.9

Q ss_pred             CcccCCCCcchHHHHH----HhCCChhhHHHHhh-cCcCHHHhcCCCHHHHhcC
Q 029178          131 KKKDQQKAETSVDGFL----RSLGLEKYSITFQA-EEVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       131 rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKeL  179 (197)
                      +.++..|+...|..||    ++.+|.. . .+.. ..+||.+|+.||.+|+...
T Consensus         2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~-i-~~~~F~~m~Gk~LC~lt~edF~~~   53 (75)
T cd08531           2 PADPTLWTREHVRQWLEWAVKEYGLQD-V-DVSRFQNIDGKELCKMTKEDFLRL   53 (75)
T ss_pred             CCChhhcCHHHHHHHHHHHHHHcCCCC-C-ChhhccCCChHHHHcCCHHHHHHH
Confidence            4678899999999999    4556633 1 2333 3799999999999998764

SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator

Probab=89.63  E-value=0.34  Score=37.33  Aligned_cols=54  Identities=19%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             CCcccCCCCcchHHHHH----HhCCChhhHHHHhh-cCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178          130 SKKKDQQKAETSVDGFL----RSLGLEKYSITFQA-EEVDMTALLHMTDEDLKALGIP-MGP  185 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKeLGI~-lGp  185 (197)
                      -++++..|+...|..||    +..+|..  ..+.. +.++|.+|+.|+.+|+.++.-+ .|+
T Consensus        13 IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~--vd~~~F~~m~Gk~LC~LskedF~~~~p~~~gd   72 (91)
T cd08541          13 VPADPTLWTQEHVRQWLEWAIKEYGLME--IDTSFFQNMDGKELCKMNKEDFLRATSLYNTE   72 (91)
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHcCCCC--CChhhccCCCHHHHHhCCHHHHHHHcCCCccH
Confidence            35678899999999999    4556642  22222 2699999999999998765433 453

SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.

>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein

Probab=89.57  E-value=0.39  Score=34.87  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=35.9

Q ss_pred             ccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178          133 KDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP  185 (197)
Q Consensus       133 ~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp  185 (197)
                      ++..|+...|..||.    +.+|..  ..+..=.+||.+|+.|+.+|+... ++ .|+
T Consensus         2 DP~~Wt~~~V~~WL~wa~~ef~L~~--i~~~~F~mnGk~LC~ls~edF~~r-~p~~Gd   56 (68)
T cd08535           2 QPRYWSRDDVLQWLRWAENEFSLPP--IDSNTFEMNGKALCLLTKEDFRYR-SPHSGD   56 (68)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCC--CChhccCCCHHHHhcCCHHHHhhh-CCCchH
Confidence            578899999999995    444533  123333799999999999997743 44 554

SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.

>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators

Probab=89.54  E-value=0.26  Score=35.48  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      ++..|+...|..||.-    .+|..-...|..=.+||.+|+.||.+|+.+
T Consensus         1 dP~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~   50 (68)
T cd08757           1 HPQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFRE   50 (68)
T ss_pred             CHhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHH
Confidence            4678999999999962    334331122333389999999999999775

SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.

>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family

Probab=89.35  E-value=0.27  Score=36.13  Aligned_cols=46  Identities=24%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             CcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      ++++..|+...|..||+    +.+|..  ..+..=.++|.+|+.||.+|...
T Consensus         1 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~--v~~~~F~m~Gk~LC~ls~edF~~   50 (71)
T cd08533           1 PKDPRLWTETHVRQWLLWAVNEFSLEG--VNFQKFCMSGRDLCALGKERFLE   50 (71)
T ss_pred             CcChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCCHHHHHcCCHHHHHH
Confidence            46788999999999994    445542  12333379999999999999765

SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.

>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor

Probab=89.07  E-value=0.31  Score=36.14  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             CcccCCCCcchHHHHHH----hCCChhhHHHHhh-cCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFLR----SLGLEKYSITFQA-EEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKe  178 (197)
                      ++++..|+...|.+||+    ..+|..- + +.. ..++|.+|+.||.+|+.+
T Consensus         2 P~DP~~Wt~~~V~~WL~Wa~~ef~L~~~-~-~~~F~~m~Gk~LC~LskedF~~   52 (75)
T cd08540           2 PADPTLWSTDHVRQWLEWAVKEYGLPDV-D-VLLFQNIDGKELCKMTKDDFQR   52 (75)
T ss_pred             CCChhhcCHHHHHHHHHHHHHHhCCCCC-C-cccccCCCHHHHHhCCHHHHHH
Confidence            56789999999999994    5556442 2 333 359999999999999765

SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po

>smart00251 SAM_PNT SAM / Pointed domain

Probab=88.94  E-value=0.3  Score=36.40  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             CcccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      ++++..|+...|..||.-    .+|..-  .|..-.++|.+|+.|+.+|+..
T Consensus        14 p~dP~~Wt~~~V~~Wl~w~~~ef~L~~~--~~~~f~m~G~~Lc~ls~edF~~   63 (82)
T smart00251       14 PADPQLWTEDHVLEWLEWAVKEFSLSPI--DFSKFDMSGKELCSMSKEEFLE   63 (82)
T ss_pred             CCChhhCCHHHHHHHHHHHHHhcCCCCC--CcccCCCCHHHHHcCCHHHHHH
Confidence            457899999999999954    344321  1333379999999999999774

A subfamily of the SAM domain

>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain

Probab=88.21  E-value=0.5  Score=36.14  Aligned_cols=47  Identities=13%  Similarity=0.114  Sum_probs=35.9

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -+.++..|+...|..||.    ..+|..-  .+..=.++|.+|+.||.+|+..
T Consensus        15 IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~edF~~   65 (89)
T cd08534          15 IPYDPMEWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQEEFFQ   65 (89)
T ss_pred             CCCChHHcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCHHHHHH
Confidence            356788999999999994    4556432  2333478999999999999764

SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.

>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog

Probab=87.03  E-value=0.69  Score=33.38  Aligned_cols=50  Identities=20%  Similarity=0.172  Sum_probs=35.5

Q ss_pred             ccCCCCcchHHHHHHh----CCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178          133 KDQQKAETSVDGFLRS----LGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP  185 (197)
Q Consensus       133 ~~~~W~~~~V~~wLks----LGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp  185 (197)
                      ++..|+...|..||.-    -+|..-  .+..=.++|.+|+.|+.+|.... +| .|+
T Consensus         1 DP~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~edF~~r-~P~~Gd   55 (66)
T cd08536           1 DPRSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSLEGFLYR-VPVGGK   55 (66)
T ss_pred             CcccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCHHHHHhh-cCCccH
Confidence            4678999999999954    455441  22333689999999999997653 44 453

Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.

>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=87.00  E-value=0.17  Score=37.32  Aligned_cols=49  Identities=22%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCC
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKALG  180 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLG  180 (197)
                      -++++..|+..+|..||.    ..++..  ..|..=.+||..|+.||.+|+.+..
T Consensus        13 ~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~--~~~~~f~~~G~~Lc~lt~e~F~~~~   65 (84)
T PF02198_consen   13 LPKDPRLWTKEDVLQWLRWVVREFDLPA--IDFSRFNMNGRELCSLTKEDFRRRF   65 (84)
T ss_dssp             SCSSGGG--HHHHHHHHHHHHHHTT-SS--CHGGGGTS-HHHHHHSHHHHHHHHS
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCc--CchhccCCCHHHHHHcCHHHHHHHc
Confidence            356889999999999995    333322  2244447999999999999988643

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=85.55  E-value=0.34  Score=49.42  Aligned_cols=51  Identities=29%  Similarity=0.422  Sum_probs=44.2

Q ss_pred             HHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHH
Q 029178          143 DGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLAL  193 (197)
Q Consensus       143 ~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aI  193 (197)
                      -+||.+|||.+|...|.+--+|.-.|-||+..||+ .+++. -=||--|...|
T Consensus       679 neWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~~LkmvdsFHr~Sl~yGI  731 (916)
T KOG0249|consen  679 NEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDSFHRTSLQYGI  731 (916)
T ss_pred             cccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46999999999999999999999999999999998 77776 56777666555

>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2

Probab=85.48  E-value=0.65  Score=35.66  Aligned_cols=47  Identities=19%  Similarity=0.182  Sum_probs=34.9

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||.    ..+|..  ..|..=.++|.+|+.|+.+|+..
T Consensus        15 Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~--i~~~~F~m~Gk~LC~Ls~edF~~   65 (89)
T cd08543          15 IPKNPWLWTEQQVCQWLLWATNEFSLVN--VNFQQFGMNGQELCNLGKERFLE   65 (89)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCChHHHHcCCHHHHHh
Confidence            456788999999999995    444543  12222369999999999999764

SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.

>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1

Probab=84.81  E-value=0.79  Score=35.11  Aligned_cols=47  Identities=23%  Similarity=0.216  Sum_probs=34.8

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -+.++..|+...|..||.    ..+|..-  .|..=.++|.+|+.|+.+|...
T Consensus        15 Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~edF~~   65 (88)
T cd08542          15 IPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGKECFLE   65 (88)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHHHHHh
Confidence            456788999999999994    4455422  2222259999999999999765

SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.

>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators

Probab=83.37  E-value=1.1  Score=33.42  Aligned_cols=53  Identities=21%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             cccCCCCcchHHHHHHhC----CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cch
Q 029178          132 KKDQQKAETSVDGFLRSL----GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGP  185 (197)
Q Consensus       132 k~~~~W~~~~V~~wLksL----GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGp  185 (197)
                      -+++.|+...|.+||.-.    .++--...|.+=.++|.+|+.|+.+++. .-.+ .|+
T Consensus         3 ~~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~-~~~p~~Gd   60 (74)
T cd08539           3 IHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFT-RAAGTAGQ   60 (74)
T ss_pred             CChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHh-hcCCchHH
Confidence            457899999999999655    4444444677778999999999999977 3344 554

SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.

>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1

Probab=82.70  E-value=3.3  Score=33.76  Aligned_cols=58  Identities=28%  Similarity=0.393  Sum_probs=47.1

Q ss_pred             CcchHHHHHHhCCChh-hHHHHhhcCcCHHHhcCCCHHHHh----cCCCCcchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEK-YSITFQAEEVDMTALLHMTDEDLK----ALGIPMGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~k-Y~~~F~~eeIDgdaLl~LTeeDLK----eLGI~lGpRKKIL~aIq~  195 (197)
                      ..+.+..||+-.|+.. .....-....++++|+.|+|++++    +.|..-+...++..|+..
T Consensus        65 ~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~  127 (129)
T PF13543_consen   65 SYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSN  127 (129)
T ss_pred             cCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            4589999999999965 556555678899999999999977    557777788888888753

>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators

Probab=80.25  E-value=1.4  Score=33.32  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=40.2

Q ss_pred             CcccCCCCcchHHHHHHhCC----ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcch
Q 029178          131 KKKDQQKAETSVDGFLRSLG----LEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGP  185 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksLG----L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGp  185 (197)
                      ..+++.|+...|.+||.-.=    ++--...|.+=.+||.+|+.|+.+++.++-.+.|+
T Consensus         7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p~Gd   65 (78)
T cd08537           7 GEEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGPLGD   65 (78)
T ss_pred             CCCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCChHH
Confidence            45689999999999996431    22223345556899999999999998765555665

SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
3k1r_B	74	Structure Of Harmonin Npdz1 In Complex With The Sam		2e-06

>pdb|3K1R|B Chain B, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 74

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 139 ETS-VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
           ETS ++ FL SL +E ++   + E++D+ AL+  +D DL+++ +P+GPR+KIL A+  R
Sbjct: 1   ETSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRR 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	2e-23
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	1e-14
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	6e-14
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	7e-14
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	1e-13
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	2e-13
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	2e-13
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	2e-13
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	3e-13
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	3e-13
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	3e-13
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	5e-13
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	5e-13
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	5e-13
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	3e-12
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	5e-12
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	5e-12
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	6e-12
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	7e-12
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	2e-11
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	3e-11
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	5e-11
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	5e-11
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	2e-05
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	9e-11
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	3e-10
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	7e-10
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	2e-09
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	3e-09
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	8e-09
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	1e-08
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	3e-08
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	4e-08
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	5e-08
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	9e-08
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	5e-07
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	2e-06
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	3e-06
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	2e-05
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	3e-05
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	4e-05
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	5e-05
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	3e-04

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} Length = 74

 Score = 87.9 bits (218), Expect = 2e-23
 Identities = 21/58 (36%), Positives = 40/58 (68%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR 196
            + ++ FL SL +E ++   + E++D+ AL+  +D DL+++ +P+GPR+KIL A+  R
Sbjct: 2   TSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRR 59

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALE 194
             +  +  +L ++ LE+Y+ TF+   +    A   +  E+LK LGI   G RK+IL  L+
Sbjct: 24  PQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQ 83

Query: 195 S 195
           +
Sbjct: 84  T 84

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A Length = 76

 Score = 63.2 bits (154), Expect = 6e-14
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  +L S+ L ++   F+  E++   L  +T ED   LG+  +G R+ I  AL 
Sbjct: 10  VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALR 63

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} Length = 90

 Score = 63.3 bits (154), Expect = 7e-14
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALES 195
              SV  +L+++ +E+Y   F  A    + ++  MT ED+ +LGI  +G +KKI+ ++++
Sbjct: 24  TFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQT 83

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A Length = 82

 Score = 62.9 bits (153), Expect = 1e-13
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
             +V  +L S+ +++Y + F +  +D M  +L +T EDL  +GI   G +K+IL +++ 
Sbjct: 23  YRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 81

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
            +V  +L S+ + +Y   F A     +  +L M  +D++ALGI  MG +KKIL ++++
Sbjct: 8   LTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQT 65

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALES 195
           T+VD +L ++ + +Y  +F  A    +  +  MT EDL  +GI   G +KKIL ++ S
Sbjct: 23  TTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHS 80

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens} Length = 81

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  +L  L L +Y   F   ++  + LLH+   DLK LG+  +G  K+IL  ++
Sbjct: 15  VAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIK 68

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} Length = 83

 Score = 61.7 bits (150), Expect = 3e-13
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
            SV  +LR++ + +Y  +F A        +  ++ EDL  +G+   G +KKIL +++ 
Sbjct: 16  GSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQH 73

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALE 194
               +V  +L S+ +++Y+  F A     +  ++ MT++D+K +G+   G +K+I  +L 
Sbjct: 10  VPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLL 69

Query: 195 S 195
            
Sbjct: 70  G 70

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 135 QQKAETSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLA 192
           Q     +V  +L S+ +++Y+  F  A    +  ++ MT++D+K +G+   G +K+I  +
Sbjct: 17  QGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYS 76

Query: 193 LES 195
           L  
Sbjct: 77  LLG 79

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
           +  +V  +L S+ +++Y+  F A     +  ++ MT++D+K +G+   G +K+I  +L  
Sbjct: 15  SHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG 74

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B Length = 86

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 139 ETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           E  +  +LR++GLE+Y         D +  L  +T+EDL+  G+     ++ +L  L+
Sbjct: 26  EAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQ 83

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
            SV  +L+++ +++Y   F A     + A++HM+ +DL  +GI  +  + KIL ++++
Sbjct: 27  VSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA 84

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82

 Score = 59.0 bits (143), Expect = 3e-12
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
            +VD +L ++ + +Y  +F          +  M  ED+  +G+   G +KKIL +++ 
Sbjct: 12  NTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQV 69

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus} Length = 74

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALE 194
           V  +L  L L++Y   F A+ +    LL +    LKALG+     R  +   L+
Sbjct: 12  VSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLK 65

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 137 KAETSVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           +    +  FL S+ LE+Y + F ++    +     + D  L+ +GI P G R++IL  L+
Sbjct: 13  EVNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQ 72

Query: 195 S 195
            
Sbjct: 73  I 73

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 128 PASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVD---MTALLHMTDEDLKALGI-PM 183
             S+    +    +V  +L S+GL +Y     A   D         M D+DL  +GI   
Sbjct: 11  AGSEMNGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNS 70

Query: 184 GPRKKILLALES 195
           G R++IL A++ 
Sbjct: 71  GHRQRILQAIQL 82

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 57.8 bits (140), Expect = 7e-12
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 142 VDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  +++ L   L++Y   F+ E++    LL +T ++L+ LG+  +G ++ IL A++
Sbjct: 16  VVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVD 71

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 139 ETSVDGFLRSLGLEKYSITFQA---EEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
             +V  +L S+GL +Y     A   + V       M D+DL  +GI   G R++IL A++
Sbjct: 12  VQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQ 71

Query: 195 S 195
            
Sbjct: 72  L 72

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae} Length = 119

 Score = 57.4 bits (138), Expect = 3e-11
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            ++  +L+SL L KYS            L+++ DE L+  G+  +G R+K+L A  
Sbjct: 50  KNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFG 103

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens} Length = 101

 Score = 56.1 bits (135), Expect = 5e-11
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 139 ETSVDGFLRSLGLEKYSITFQA---EEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           E SV  +L S+GL++Y         ++V       M ++DL+ +GI     R+K+L A  
Sbjct: 29  EQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAAR 88

Query: 195 S 195
           S
Sbjct: 89  S 89

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 57.4 bits (138), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           ++  +L  +GL +Y         + +  +  +T EDL+ +GI  +G +KK++LA+ 
Sbjct: 81  NLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVR 136

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMG 184
           +V  +L +  L+ Y+  F +   D+  +  MT EDL A+G+   
Sbjct: 12  AVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKP 55

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens} Length = 80

 Score = 55.1 bits (133), Expect = 9e-11
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 142 VDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  +++ L   L++Y   F+ E++    LL +T ++L+ LG+  +G ++ IL A++
Sbjct: 12  VVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVD 67

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A Length = 88

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            ++  +L+SL L KYS            L+++ DE L+  G+  +G R+K+L A  
Sbjct: 19  KNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFG 72

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A Length = 101

 Score = 53.1 bits (127), Expect = 7e-10
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            ++  +L+SL L KYS            L+++ DE L+  G+  +G R+K+L A  
Sbjct: 32  KNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFG 85

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A Length = 89

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 142 VDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALES 195
           V  F+R L G + Y   F  +E+D  ALL + ++ L  A+G+ +GP  KI+  +ES
Sbjct: 22  VSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVES 77

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2 Length = 78

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 129 ASKKKDQQKAETSVDGFLRSLGLEKYSITFQAEE-VDMTALLHMTDEDLKALGI-PMGPR 186
           +S    +++   ++  FL  + L++Y+ T        +  L  + +  L  L I     R
Sbjct: 2   SSGSSGRRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDR 61

Query: 187 KKILLALES 195
            ++L A ES
Sbjct: 62  ARLLSAAES 70

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 50.2 bits (120), Expect = 8e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 142 VDGFLRSLGLE--KYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  FLR  G E        +  E+    L  + +   + LG+  +G RKK+L  ++
Sbjct: 35  VCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQ 90

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 145 FLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           +LR L        F+  ++    LL +  + L+AL +  +G ++ IL  +E
Sbjct: 22  WLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVE 72

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A Length = 85

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 134 DQQKAETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGI-PMGPRKKILL 191
           ++      V  FL  +G  +Y  +F    +     + ++  + L ALG+  +G R KIL 
Sbjct: 10  EKTNDLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILR 69

Query: 192 AL 193
             
Sbjct: 70  KS 71

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A Length = 89

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 142 VDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALES 195
           V  ++ S    L  +   F+  E+D  ALL +  E + K +G+ +GP  KI   +  
Sbjct: 22  VIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNK 78

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus} Length = 265

 Score = 50.6 bits (120), Expect = 5e-08
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDL-KALGI-PMGPRKKILLALESR 196
           V  +L   GL  Y  + +   +    LL  + +DL K LGI     RKK+ LAL++ 
Sbjct: 23  VCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQAL 79

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13 Length = 173

 Score = 48.9 bits (116), Expect = 9e-08
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALE 194
           + +  +L+SL L KY   F  + +    +L +T++ L+++G+  G   K+ L ++
Sbjct: 8   SGIGLWLKSLRLHKYIELF--KNMTYEEMLLITEDFLQSVGVTKGASHKLALCID 60

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLAL 193
           +SV  +L S+GL  Y+ T        ++ +  ++   L+  GI      +K+L A 
Sbjct: 24  SSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAA 79

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster} Length = 78

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 148 SLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
                +Y   F   ++   ALL +TD  L+ +G+     R+ I   + 
Sbjct: 19  CGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIV 66

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster} Length = 106

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 148 SLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
                +Y   F   ++   ALL +TD  L+ +G+     R+ I   + 
Sbjct: 39  CGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIV 86

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 145 FLRSLGLEKYSITFQAEEV-DMTALLHMTDEDL-KALGI-PMGPRKKILLALESR 196
           +L S+ L  Y+  F       M  L  + + +L   L I  +G RK+IL +L  R
Sbjct: 94  WLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGDR 148

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 91

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 142 VDGFLRSLG--LEKYSITFQAEEVDMTALLHMTDEDLK--ALGI-PMGPRKKILLALE 194
           V  +L  LG     Y   F +E V+   LL +T+E+       I     R+ IL  LE
Sbjct: 25  VVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELE 82

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A Length = 69

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPMGPRKKI 189
            + S+  FL  LG       F  + +  +  + H + +DL +L IP   R  I
Sbjct: 3   TDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAI 55

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A Length = 334

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 5/128 (3%)

Query: 72  KGHLSGVRDLREKLSGTMNSQPVNSDPPKPKLEAAKLARKSVAVEAPEPESKRIAVPASK 131
                 ++++    S +                       + A      E      P   
Sbjct: 93  LKLRLAIQEMVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAQAKTKESEEGSWAQCPVFL 152

Query: 132 KKDQQK---AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGI-PMGPR 186
           +         E   + +L SLGL +Y   F    VD   L H+T +DL+  L +     R
Sbjct: 153 QTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHR 212

Query: 187 KKILLALE 194
             +   + 
Sbjct: 213 TSLQYGIM 220

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens} Length = 82

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 135 QQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPMGPRKKILLAL 193
               + S+  FL  LG       F  + +  +  + H + +DL +L IP   R  I   +
Sbjct: 2   SYPTDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGI 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	99.69
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	99.68
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	99.68
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	99.68
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	99.66
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	99.65
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	99.64
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	99.64
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	99.61
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	99.61
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	99.6
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	99.6
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	99.6
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	99.59
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	99.59
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	99.58
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	99.58
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	99.58
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	99.57
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	99.57
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	99.57
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	99.57
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	99.56
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	99.55
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	99.53
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	99.52
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	99.52
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	99.52
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	99.5
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	99.49
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	99.46
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	99.44
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.39
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.36
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	99.34
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	99.33
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	99.31
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	99.3
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	99.28
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	99.26
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	99.21
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	99.2
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	99.13
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	98.99
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	98.91
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	98.87
1uqv_A	85	STE50 protein; SAM, sterIle alpha motif, helical,	98.69
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.65
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	98.34
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	98.27
1dxs_A	80	P53-like transcription factor; P73 SAM-like domain	98.2
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	98.18
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	98.16
3idw_A	72	Actin cytoskeleton-regulatory complex protein SLA;	97.76
2qar_B	93	Telsam domain; polymer, crystallization modules, s	95.77
1sv0_C	82	Modulator of the activity of ETS CG15085-PA; alpha	95.67
1ji7_A	89	ETS-related protein TEL1; helical polymer, transcr	95.38
1wwu_A	99	Hypothetical protein FLJ21935; structural genomics	93.55
2e8m_A	99	Epidermal growth factor receptor kinase substrate	93.04
1x66_A	98	Friend leukemia integration 1 transcription factor	91.57
1sv0_A	85	ETS DNA-binding protein pokkuri; alpha-helix, 3(10	89.73
2e8p_A	92	ELF3 protein; cell-free protein synthesis, protein	89.18
2dkx_A	96	SAM pointed domain-containing ETS transcription fa	87.92
1sxd_A	91	GA repeat binding protein, alpha; alpha helical, t	86.1
1sxe_A	97	Transcriptional regulator ERG; alpha helical, sign	84.57
2jv3_A	110	ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, M	81.56

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=99.69  E-value=3.1e-17  Score=116.12  Aligned_cols=63  Identities=25%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             ccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          133 KDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       133 ~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +...|+..+|++||.++||++|.+.|.+|+||++.|+.||++||++|||+ +|||++|+++|+.
T Consensus         3 ~v~~Ws~~~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~   66 (74)
T 2gle_A            3 MVHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKE   66 (74)
T ss_dssp             CGGGCCSGGGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHS
T ss_pred             CcccCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999 9999999999875

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=99.68  E-value=4e-17  Score=118.24  Aligned_cols=65  Identities=28%  Similarity=0.477  Sum_probs=61.4

Q ss_pred             CcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          131 KKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +++...|+..+|.+||+++||++|.+.|.+++||+..|+.||++||++|||+ +|||+||+.+|+.
T Consensus         4 ~~~v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~   69 (81)
T 3bq7_A            4 TRPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKE   69 (81)
T ss_dssp             -CCGGGCCHHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CCChhhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999998 9999999999975

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=99.68  E-value=4.1e-17  Score=117.68  Aligned_cols=58  Identities=36%  Similarity=0.718  Sum_probs=55.4

Q ss_pred             cchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHhc
Q 029178          139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR  196 (197)
Q Consensus       139 ~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~~  196 (197)
                      .++|.+||+++||++|.+.|.+++||++.|.+||++||++|||++|||+||+++|+++
T Consensus         2 ~~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~~   59 (74)
T 3k1r_B            2 TSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRR   59 (74)
T ss_dssp             CCHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999864

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=99.68  E-value=4.3e-17  Score=116.82  Aligned_cols=61  Identities=30%  Similarity=0.410  Sum_probs=59.2

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|+..+|.+||+++||++|.+.|.+++||++.|+.||++||++|||+ +|||+||+++|+.
T Consensus         3 ~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~   64 (76)
T 2f3n_A            3 QLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQ   64 (76)
T ss_dssp             GGCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred             hhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999 9999999999975

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=8.2e-17  Score=121.62  Aligned_cols=68  Identities=22%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             CCCCcccCCCCcchHHHHHHhCCChh--hHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          128 PASKKKDQQKAETSVDGFLRSLGLEK--YSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       128 ~~~rk~~~~W~~~~V~~wLksLGL~k--Y~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....++...|+..+|++||+.+||++  |++.|.+|+||++.|+.|+++||++|||. .|||++|+++|+.
T Consensus        21 ~~~~~~v~~Ws~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~   91 (103)
T 2e8o_A           21 LELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQR   91 (103)
T ss_dssp             CCCCSCGGGCHHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cccccChhhCCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            44567789999999999999999999  99999999999999999999999999998 9999999999975

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=9.8e-17  Score=116.13  Aligned_cols=66  Identities=24%  Similarity=0.454  Sum_probs=62.2

Q ss_pred             CCcccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +.++...|+..+|++||+.+  ||++|.+.|.+|+||++.|+.||++||++|||+ +|||++|+++|+.
T Consensus         4 ~~~~v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~   72 (83)
T 2ean_A            4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDL   72 (83)
T ss_dssp             SCCSGGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred             CCCccccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            55678899999999999999  599999999999999999999999999999998 9999999999874

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=114.03  Aligned_cols=64  Identities=25%  Similarity=0.473  Sum_probs=60.2

Q ss_pred             cccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          132 KKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       132 k~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ++...|+..+|+.||+++  ||++|.+.|.+|+||++.|+.||++||++|||+ +|||++|+.+|+.
T Consensus         2 ~~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~   68 (80)
T 3bs5_B            2 EPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDL   68 (80)
T ss_dssp             CCGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            346789999999999999  599999999999999999999999999999998 9999999999875

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=99.64  E-value=2e-16  Score=117.59  Aligned_cols=69  Identities=30%  Similarity=0.509  Sum_probs=63.5

Q ss_pred             CCCCcccCCCCcchHHHHHHhC-CChhhHHHHhhcCcCHHHhcCCCHHHH-hcCCCCcchHHHHHHHHHhc
Q 029178          128 PASKKKDQQKAETSVDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALESR  196 (197)
Q Consensus       128 ~~~rk~~~~W~~~~V~~wLksL-GL~kY~~~F~~eeIDgdaLl~LTeeDL-KeLGI~lGpRKKIL~aIq~~  196 (197)
                      ..++.+...|+..+|++||+++ ||++|.+.|.+++|||++|+.||++|| ++|||++|||+||+++|+..
T Consensus         8 ~~~~~~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L   78 (89)
T 1kw4_A            8 GTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESI   78 (89)
T ss_dssp             --CCCCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3456678999999999999999 999999999999999999999999999 89999999999999999763

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=99.61  E-value=3.4e-16  Score=111.72  Aligned_cols=64  Identities=22%  Similarity=0.290  Sum_probs=60.5

Q ss_pred             cccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          132 KKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       132 k~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      |+...|+..+|+.||+.+  |+++|.+.|.+|+||++.|+.||++||++|||+ .|||++|+.+|+.
T Consensus         1 k~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~   67 (78)
T 3bs7_A            1 KAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVK   67 (78)
T ss_dssp             CCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999997  999999999999999999999999999999999 9999999999874

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=9.8e-16  Score=112.79  Aligned_cols=59  Identities=25%  Similarity=0.481  Sum_probs=55.7

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....+|.+||.++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+++|+.
T Consensus        10 ~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~   70 (88)
T 2e8n_A           10 VPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLG   70 (88)
T ss_dssp             CSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence            3467999999999999999999999999 999999999999999999 8999999999875

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=99.60  E-value=6e-16  Score=113.23  Aligned_cols=62  Identities=24%  Similarity=0.483  Sum_probs=53.5

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +..|...+|.+||.++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+.+|+.
T Consensus        11 ~~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~   74 (82)
T 2kso_A           11 VPRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG   74 (82)
T ss_dssp             -------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence            4557889999999999999999999999999 999999999999999999 8999999999875

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=99.60  E-value=1.5e-15  Score=110.05  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=54.9

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.+++| |++.|..||++||++|||+ +|||+||+.+|+.
T Consensus        10 ~~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~   69 (82)
T 1b4f_A           10 SFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQV   69 (82)
T ss_dssp             CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999999 7999999999999999999 8999999999875

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=99.60  E-value=5.7e-16  Score=118.26  Aligned_cols=69  Identities=20%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             CCCCCcccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          127 VPASKKKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       127 ~~~~rk~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      .....++...|+..+|+.||+.+  ||++|.+.|.+|+||++.|+.|+++||++|||+ .|||++|+.+|+.
T Consensus        16 ~~~~~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~   87 (106)
T 3bs5_A           16 KTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVK   87 (106)
T ss_dssp             ----CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            33456678899999999999999  999999999999999999999999999999999 9999999999875

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=110.97  Aligned_cols=58  Identities=29%  Similarity=0.492  Sum_probs=55.2

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcC-cCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEE-VDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~ee-IDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.+++ +|++.|..||++||++|||+ +|||+||+++|+.
T Consensus        14 ~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~   73 (83)
T 2qkq_A           14 AFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQH   73 (83)
T ss_dssp             CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999999998 89999999999999999999 9999999999975

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.59  E-value=1.3e-15  Score=110.54  Aligned_cols=58  Identities=33%  Similarity=0.569  Sum_probs=55.0

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+.+|+.
T Consensus         6 ~~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~   65 (81)
T 1ucv_A            6 SGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQT   65 (81)
T ss_dssp             CCSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHH
Confidence            457899999999999999999999999 999999999999999999 8999999999875

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.58  E-value=5.6e-16  Score=114.73  Aligned_cols=67  Identities=28%  Similarity=0.334  Sum_probs=62.9

Q ss_pred             CCCcccCCCCcchHHHHHHhCCC--hhhHHHHhhcCcCHHHhcCCCHHHHhc--CCCC-cchHHHHHHHHHh
Q 029178          129 ASKKKDQQKAETSVDGFLRSLGL--EKYSITFQAEEVDMTALLHMTDEDLKA--LGIP-MGPRKKILLALES  195 (197)
Q Consensus       129 ~~rk~~~~W~~~~V~~wLksLGL--~kY~~~F~~eeIDgdaLl~LTeeDLKe--LGI~-lGpRKKIL~aIq~  195 (197)
                      ...++...|+..+|+.||+.+|+  ++|.+.|.+|+||++.|+.||++||++  |||. .|||++|+.+|+.
T Consensus        12 ~~~~~v~~Wt~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~   83 (91)
T 1v85_A           12 LVHKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELER   83 (91)
T ss_dssp             HHHSCGGGCCHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence            44567889999999999999999  999999999999999999999999998  9999 9999999999975

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.6e-15  Score=112.08  Aligned_cols=62  Identities=29%  Similarity=0.503  Sum_probs=58.3

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +.-+...+|.+||+++||++|.+.|.+++|| ++.|..|+++||++|||+ +|||+||+.+|+.
T Consensus        20 ~~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~   83 (90)
T 3h8m_A           20 PDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQT   83 (90)
T ss_dssp             CCCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CCCcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            4556789999999999999999999999998 999999999999999999 8999999999975

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.2e-15  Score=112.32  Aligned_cols=59  Identities=34%  Similarity=0.520  Sum_probs=55.9

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....+|.+||+++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+.+|+.
T Consensus        20 ~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~   80 (99)
T 2eao_A           20 TAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHS   80 (99)
T ss_dssp             TSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence            3568999999999999999999999999 999999999999999999 8999999999975

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=99.57  E-value=2.5e-15  Score=111.93  Aligned_cols=59  Identities=29%  Similarity=0.573  Sum_probs=55.6

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....+|.+||+++||++|.+.|.+++| |++.|.+||++||++|||+ +|||+||+.+|+.
T Consensus        24 ~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~   84 (94)
T 1b0x_A           24 SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA   84 (94)
T ss_dssp             CSSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence            356899999999999999999999999 8999999999999999999 8999999999875

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=99.57  E-value=3.3e-15  Score=109.81  Aligned_cols=59  Identities=31%  Similarity=0.603  Sum_probs=56.1

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....+|.+||+++||++|.+.|.+++|| ++.|..|+++||++|||+ +|||+||+.+|+.
T Consensus        21 ~~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~   81 (82)
T 3hil_A           21 IPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG   81 (82)
T ss_dssp             CCCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHh
Confidence            3668999999999999999999999998 999999999999999999 8999999999985

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=114.12  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      .|++...|...+|.+||..+||++|.+.|.++++| ++.|.+|+++||++|||+ +|||+||+++|+.
T Consensus        14 ~~~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~   81 (97)
T 2dl0_A           14 CRKPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARL   81 (97)
T ss_dssp             CCCCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred             ccCCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            56667778999999999999999999999999998 799999999999999999 9999999999975

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=99.57  E-value=2.6e-15  Score=113.92  Aligned_cols=62  Identities=31%  Similarity=0.460  Sum_probs=58.1

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+...+|.+||.++||++|.+.|.+++|| ++.|..||++||++|||+ .|||+||+++|+.
T Consensus        21 m~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~   84 (100)
T 2kg5_A           21 MAAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQT   84 (100)
T ss_dssp             CSCCTTCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred             cCCCCcChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHH
Confidence            4455778999999999999999999999999 999999999999999999 9999999999975

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=99.56  E-value=3.4e-15  Score=110.83  Aligned_cols=62  Identities=26%  Similarity=0.434  Sum_probs=57.5

Q ss_pred             cCCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          134 DQQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       134 ~~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...|...+|.+||.++||++|.+.|.++++| ++.|..||++||++|||+ +|||+||+.+|+.
T Consensus        21 ~~~~~~~~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~   84 (86)
T 2k4p_A           21 MSGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL   84 (86)
T ss_dssp             -CCCCSCSSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            3557889999999999999999999999985 899999999999999999 9999999999975

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.55  E-value=9.7e-15  Score=105.77  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             CcccCCCCcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          131 KKKDQQKAETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ++.+......+|.+||..+||++|.+.|..+++ +++.+..||++||++|||+ +|||+||+.+|+.
T Consensus         4 ~~~~~~~~~~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~   70 (78)
T 1v38_A            4 GSSGRRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES   70 (78)
T ss_dssp             SCCCCCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            333455588899999999999999999999998 5999999999999999999 9999999999874

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=99.53  E-value=9.7e-15  Score=108.14  Aligned_cols=58  Identities=26%  Similarity=0.505  Sum_probs=53.3

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.+++|| ++.|..|+++||++|||+ +|||+||+.+|+.
T Consensus        20 ~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~   79 (86)
T 3kka_C           20 PFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG   79 (86)
T ss_dssp             ---CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            567999999999999999999999998 999999999999999999 8999999999975

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.52  E-value=9.3e-15  Score=110.60  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhc--CCCC-cchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKA--LGIP-MGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe--LGI~-lGpRKKIL~aIq~  195 (197)
                      ..++...|+.++|+.||+++||++|++.| +| ||++.|+.||++||++  |||. .|+|+||+.+|+.
T Consensus        13 ~~~~v~~Ws~edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~   79 (97)
T 2d8c_A           13 TMKEVVYWSPKKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIET   79 (97)
T ss_dssp             CCSCCSSCCTTHHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHH
T ss_pred             CCCchhhCCHHHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence            45667899999999999999999999999 67 9999999999999999  9998 9999999999975

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.6e-15  Score=106.34  Aligned_cols=59  Identities=32%  Similarity=0.478  Sum_probs=53.9

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcCHHHh---cCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVDMTAL---LHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaL---l~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +...+|.+||+++||++|.+.|.+++||...+   ..||++||++|||+ +|||+||+.+|+.
T Consensus        10 ~~~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~   72 (80)
T 2eam_A           10 CPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQL   72 (80)
T ss_dssp             CCCCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            36679999999999999999999999986654   59999999999999 9999999999975

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.52  E-value=1.4e-14  Score=107.68  Aligned_cols=58  Identities=28%  Similarity=0.519  Sum_probs=54.5

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.++++ +++.|.+||++||++|||+ +|||+||+.+|+.
T Consensus        14 ~~~~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~   73 (91)
T 1x40_A           14 VNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQI   73 (91)
T ss_dssp             TCCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHH
Confidence            56789999999999999999999998 5999999999999999999 9999999999874

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.50  E-value=9.6e-15  Score=109.29  Aligned_cols=66  Identities=24%  Similarity=0.394  Sum_probs=60.6

Q ss_pred             CCCCcccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          128 PASKKKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       128 ~~~rk~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ....++...|+..+|+.||+.+  ++.+|  .|.+|+|+++.|+.||++||++|||. .|||++|+.+|+.
T Consensus         5 ~~~~~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~   73 (91)
T 1wwv_A            5 SSGMEPVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQ   73 (91)
T ss_dssp             SCSCCCTTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHH
Confidence            3455678899999999999977  79999  89999999999999999999999999 9999999999974

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=99.49  E-value=1.2e-14  Score=109.97  Aligned_cols=61  Identities=31%  Similarity=0.470  Sum_probs=52.9

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHh---cCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTAL---LHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaL---l~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|...+|.+||.++||++|.+.|.+++||+..+   ..||++||++|||+ +|||+||+.+|+.
T Consensus        18 ~~w~~~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~   82 (103)
T 2ke7_A           18 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQL   82 (103)
T ss_dssp             -----CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             cCCCHhHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999999997765   59999999999999 9999999999975

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=99.46  E-value=4.8e-14  Score=105.08  Aligned_cols=66  Identities=24%  Similarity=0.332  Sum_probs=60.9

Q ss_pred             CCcccCCCCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHH-hcCCCCcchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDL-KeLGI~lGpRKKIL~aIq~  195 (197)
                      .+.++..|+..+|++||+++  |+++|.+.|.+++|||++|+.||++|| +.|||.+||+.||..+|+.
T Consensus        10 ~~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~   78 (89)
T 1pk1_B           10 LRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNK   78 (89)
T ss_dssp             -CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHH
Confidence            45667899999999999999  799999999999999999999999997 5799999999999999975

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=99.44  E-value=7.2e-14  Score=106.50  Aligned_cols=58  Identities=34%  Similarity=0.516  Sum_probs=53.3

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhc--CCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALL--HMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl--~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.+++|| ++.|.  .||++||++|||+ +|||+||+.+|+.
T Consensus        28 ~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~   89 (101)
T 2lmr_A           28 LEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARS   89 (101)
T ss_dssp             SSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998 67787  8999999999999 9999999999975

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.39  E-value=3.4e-13  Score=107.90  Aligned_cols=58  Identities=31%  Similarity=0.527  Sum_probs=55.5

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +..+|.+||+++||++|.+.|.++++|++.|..||++||++|||+ +|||+||+.+|+.
T Consensus         9 ~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~   67 (149)
T 3sei_A            9 SSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISG   67 (149)
T ss_dssp             HHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999999 9999999999975

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.36  E-value=9.5e-13  Score=105.32  Aligned_cols=57  Identities=26%  Similarity=0.501  Sum_probs=54.3

Q ss_pred             cchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          139 ETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       139 ~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+|.+||+++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+.+|+.
T Consensus        79 p~~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~  137 (149)
T 3sei_A           79 PANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRK  137 (149)
T ss_dssp             CSCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999998 999999999999999999 9999999999974

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=99.34  E-value=4.6e-13  Score=100.24  Aligned_cols=58  Identities=28%  Similarity=0.335  Sum_probs=53.7

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcCH-HHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVDM-TALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeIDg-daLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +...|++||.++||++|.+.|.+++|++ +.|..|..++|++|||+ +|||.+|+.+++.
T Consensus        14 ~~~~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~   73 (85)
T 1ow5_A           14 DLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKS   73 (85)
T ss_dssp             --CHHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHH
Confidence            3448999999999999999999999999 99999999999999999 9999999999864

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=99.33  E-value=1.9e-12  Score=92.90  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=54.1

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      .+.+|.+||+.+++++|.+.|.+.++ +++.+..||.+||..|||+.|||+||+.+|+.
T Consensus         3 ~d~sv~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~   61 (69)
T 2y9u_A            3 TDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD   61 (69)
T ss_dssp             CCCBHHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHH
Confidence            56799999999999999999998765 69999999999999999999999999999975

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=102.14  Aligned_cols=59  Identities=34%  Similarity=0.511  Sum_probs=54.9

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHH-hcCCCC-cchHHHHHHHHHhc
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDL-KALGIP-MGPRKKILLALESR  196 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDL-KeLGI~-lGpRKKIL~aIq~~  196 (197)
                      ...+|.+||.++||++|.+.|.+++++ ++.|..||++|| ++|||+ +|||+||+.+|+++
T Consensus        87 ~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~~  148 (148)
T 2kiv_A           87 HPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGDR  148 (148)
T ss_dssp             CCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTCC
T ss_pred             CcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhhC
Confidence            457899999999999999999999995 799999999997 999998 99999999999875

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=99.30  E-value=3e-12  Score=96.21  Aligned_cols=55  Identities=31%  Similarity=0.486  Sum_probs=51.3

Q ss_pred             cchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       139 ~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+|..||++|+|++|.+.|..  ++++.+..||++||+++||+ .|+|+||+.+|+.
T Consensus        18 ~~~V~~WL~sLrLhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~   73 (88)
T 2d3d_A           18 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI   73 (88)
T ss_dssp             HTCHHHHHHHTTCGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcccchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence            4589999999999999999974  79999999999999999999 9999999999874

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=102.74  Aligned_cols=58  Identities=34%  Similarity=0.519  Sum_probs=52.7

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcCH-HHhc--CCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVDM-TALL--HMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeIDg-daLl--~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+++||++|.+.|.++++|+ +.+.  .||++||++|||+ +|||+||+.+|+.
T Consensus        13 ~~~~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~   74 (148)
T 2kiv_A           13 SVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQL   74 (148)
T ss_dssp             -CCBHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHH
T ss_pred             CcchHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence            5578999999999999999999999997 5555  9999999999999 9999999999975

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=99.26  E-value=5.1e-12  Score=93.52  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=54.0

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      .+.+|.+||+.+++++|.+.|.+.++ +++.+..||.+||..|||+.|||+||+.+|+.
T Consensus         5 ~~~SV~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~   63 (82)
T 2y9t_A            5 TDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD   63 (82)
T ss_dssp             CSSBHHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHH
Confidence            56799999999999999999998765 69999999999999999999999999999875

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=8.5e-12  Score=98.27  Aligned_cols=56  Identities=30%  Similarity=0.462  Sum_probs=51.6

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ...+|.+||+.|+|++|.+.|  +.++++.|..||++||+++||+ .|+|+||+.+|+.
T Consensus        48 ~~~dV~~WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~  104 (119)
T 2b6g_A           48 LLKNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGI  104 (119)
T ss_dssp             HHHCHHHHHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHCCChhHHHHH--ccCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHH
Confidence            456889999999999999999  4689999999999999999999 9999999998864

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=99.20  E-value=1.1e-11  Score=95.24  Aligned_cols=55  Identities=31%  Similarity=0.486  Sum_probs=51.3

Q ss_pred             cchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          139 ETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       139 ~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+|..||++|+|.+|.+.|..  ++++.+..||++||+++||+ .|+|+||+.+|+.
T Consensus        31 ~~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~   86 (101)
T 2es6_A           31 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI   86 (101)
T ss_dssp             HTCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence            3589999999999999999965  79999999999999999999 9999999999874

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=99.13  E-value=2.6e-11  Score=106.08  Aligned_cols=66  Identities=27%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~  195 (197)
                      +.++...|..++|+.||+.+||++|.+.|.++.+|+..|+.||++||+ ++||. ++||+||+.+|++
T Consensus        11 ~~~p~~~W~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~e   78 (265)
T 3tad_C           11 LDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQA   78 (265)
T ss_dssp             ---CGGGSCHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred             CCCChhhCChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445688999999999999999999999999999999999999999996 99999 9999999999975

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=98.99  E-value=3.4e-10  Score=94.11  Aligned_cols=56  Identities=25%  Similarity=0.498  Sum_probs=51.7

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      ...+|..||++|+|.+|.+.|..  ++++.+..||++||+++||+.|+|+||+.+|+.
T Consensus         6 ~~~dV~~WLksLrLhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~   61 (173)
T 1oxj_A            6 GMSGIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDK   61 (173)
T ss_dssp             TCTTHHHHHHHTTCGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHcccchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHH
Confidence            34699999999999999999974  789999999999999999999999999999864

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=98.91  E-value=9.8e-10  Score=96.16  Aligned_cols=61  Identities=26%  Similarity=0.292  Sum_probs=56.8

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..++...|.+||.++||.+|...|.++.||+..|.+||++||+++||+ .+||++|+.+|+.
T Consensus        88 ~~~d~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~  149 (265)
T 3tad_C           88 GKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQV  149 (265)
T ss_dssp             GGCCHHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999 9999999999875

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.6e-09  Score=79.74  Aligned_cols=66  Identities=23%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCCcccCCCCcchHHHHHHhCCChh-hHHHHhhcCcCHHHhcCCCHHHHh-cCCCCcchHHHHHHHHH
Q 029178          129 ASKKKDQQKAETSVDGFLRSLGLEK-YSITFQAEEVDMTALLHMTDEDLK-ALGIPMGPRKKILLALE  194 (197)
Q Consensus       129 ~~rk~~~~W~~~~V~~wLksLGL~k-Y~~~F~~eeIDgdaLl~LTeeDLK-eLGI~lGpRKKIL~aIq  194 (197)
                      .++++...|+..+|+.||+.+||++ |.+.|++|.||++.|+.|++++|. ++|++.=+.+||+.+|+
T Consensus        10 ~pP~dLs~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~   77 (84)
T 2dkz_A           10 QPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN   77 (84)
T ss_dssp             CCCSCCSSCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CCchhhhhcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence            4577889999999999999999997 579999999999999999999996 69999889999999985

>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A

Probab=98.69  E-value=8.6e-09  Score=77.13  Aligned_cols=64  Identities=13%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             cccCCCCcchHHHHH-HhCCChh---hHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          132 KKDQQKAETSVDGFL-RSLGLEK---YSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       132 k~~~~W~~~~V~~wL-ksLGL~k---Y~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      .....|+...|+.|+ ..+|+..   .++.|.+|.|+|+.|+.|+.+|||+|+|. .|.|.++...|+.
T Consensus         7 ~~v~~Wt~~~V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~   75 (85)
T 1uqv_A            7 EDFSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINK   75 (85)
T ss_dssp             CCTTTCCHHHHHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHH
Confidence            346789999999999 8889876   78999999999999999999999999999 9999999998874

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.65  E-value=2.7e-08  Score=89.65  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             ccCCCCcchHHHHHHh-CCChh-hHHHHhhcCcCHHHhcCCCHHHHh-cCCCC-cchHHHHHHHHHhc
Q 029178          133 KDQQKAETSVDGFLRS-LGLEK-YSITFQAEEVDMTALLHMTDEDLK-ALGIP-MGPRKKILLALESR  196 (197)
Q Consensus       133 ~~~~W~~~~V~~wLks-LGL~k-Y~~~F~~eeIDgdaLl~LTeeDLK-eLGI~-lGpRKKIL~aIq~~  196 (197)
                      +...|...+|+.||+. +||.. |...|.++.+++..|+.||++||. ++||. +.||+||..+|++.
T Consensus        35 Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel  102 (334)
T 3tac_B           35 PFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM  102 (334)
T ss_dssp             CGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3788999999999999 89987 999999999999999999999996 99999 99999999999863

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=76.90  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             cCCCCcchHHHHHHh-CCChhhHHHHhhcCcCHHHhcCCCHHH----HhcCCCC-cchHHHHH
Q 029178          134 DQQKAETSVDGFLRS-LGLEKYSITFQAEEVDMTALLHMTDED----LKALGIP-MGPRKKIL  190 (197)
Q Consensus       134 ~~~W~~~~V~~wLks-LGL~kY~~~F~~eeIDgdaLl~LTeeD----LKeLGI~-lGpRKKIL  190 (197)
                      ...|+..+|..||.. +||.+|.+.|.++.|||..|+.|+..+    +.+|||. .+||.||.
T Consensus        78 V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~  140 (150)
T 2l5y_A           78 VHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ  140 (150)
T ss_dssp             HHHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred             chhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence            457999999999988 599999999999999999999999876    4599998 99999997

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=98.27  E-value=2e-07  Score=75.89  Aligned_cols=57  Identities=18%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             cCCCCcchHHHHHHhC-CChhhHHHHhhcCcCHHHhcCCCHHH--H--hcCCCC-cchHHHHH
Q 029178          134 DQQKAETSVDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDED--L--KALGIP-MGPRKKIL  190 (197)
Q Consensus       134 ~~~W~~~~V~~wLksL-GL~kY~~~F~~eeIDgdaLl~LTeeD--L--KeLGI~-lGpRKKIL  190 (197)
                      ...|+..+|..||... +|.+|.+.|.++.|||.+|+.|+.++  +  .+|||. .+||.||-
T Consensus        78 V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~  140 (150)
T 2k60_A           78 VYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQ  140 (150)
T ss_dssp             HHHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHH
Confidence            4579999999999554 99999999999999999999999986  4  799999 99999987

>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A

Probab=98.20  E-value=2.7e-06  Score=63.02  Aligned_cols=59  Identities=32%  Similarity=0.383  Sum_probs=52.1

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCCcchHHHHHHHHHhc
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIPMGPRKKILLALESR  196 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~~  196 (197)
                      .+.+|+.||..|||..|.+.|.++++ ++..|-.++-+||..|.|+-.+|.||..++.+.
T Consensus         5 ~D~Sv~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~e~   64 (80)
T 1dxs_A            5 ADPSLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDL   64 (80)
T ss_dssp             ---CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred             CCccHHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhHHHh
Confidence            57899999999999999999998765 699999999999999999999999999988653

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=98.18  E-value=1.9e-06  Score=77.80  Aligned_cols=58  Identities=28%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             CcchHH-HHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHH-hcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVD-GFLRSLGLEKYSITFQAEEVDMTALLHMTDEDL-KALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~-~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDL-KeLGI~-lGpRKKIL~aIq~  195 (197)
                      +..-|. .||.++||.+|...|..+.||+..|-+||.+|| ..+||+ ..||++|+.+|+.
T Consensus       161 dh~WV~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~  221 (334)
T 3tac_B          161 NHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMC  221 (334)
T ss_dssp             CHHHHHHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             ccCcchhhhccccChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHH
Confidence            344556 899999999999999999999999999999999 699999 9999999999864

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=3.5e-06  Score=63.61  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             CCCcccCCCCcchHHHHHHhCCChhhHHHHh-hcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          129 ASKKKDQQKAETSVDGFLRSLGLEKYSITFQ-AEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       129 ~~rk~~~~W~~~~V~~wLksLGL~kY~~~F~-~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +.+++...|+..+|++||+.+|+.+ ++.|. +|+|||.+|+.|||+||+..--. .---.||-..|+.
T Consensus        14 ps~seV~~Wsp~~VadWLkk~g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk~Pkl~~p~~~k~~q~in~   81 (90)
T 2eap_A           14 PFRSEVLGWDPDSLADYFKKLNYKD-CEKAVKKYHIDGARFLNLTENDIQKFPKLRVPILSKLSQEINK   81 (90)
T ss_dssp             CCHHHHTTCCTTTHHHHHHHTTCHH-HHHHHHHTTCCHHHHHTCCHHHHTTSCTTTHHHHHHHHHHHHT
T ss_pred             ccCccccccCHHHHHHHHHHcCCch-HHHHHHHhccCchhhhcccHHHhccCCccccHHHHHHHHHHhc
Confidence            3567778999999999999999999 88886 78899999999999999972221 3334455555543

>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}

Probab=97.76  E-value=2.8e-05  Score=56.54  Aligned_cols=53  Identities=21%  Similarity=0.495  Sum_probs=47.8

Q ss_pred             HHHHhCC-----ChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHhc
Q 029178          144 GFLRSLG-----LEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALESR  196 (197)
Q Consensus       144 ~wLksLG-----L~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~~  196 (197)
                      +|+-..|     +++|...|.++.|+-+.|..|+.+-|++|||..|+..+|++++..+
T Consensus         7 ~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~l~~k   64 (72)
T 3idw_A            7 EFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDKK   64 (72)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHHHHHH
Confidence            5666777     4689999999999999999999999999999999999999998754

>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}

Probab=95.77  E-value=0.0047  Score=46.05  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhH---HHHhhcCcCHHHhcCCCHHHHhc-CCCCcch
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYS---ITFQAEEVDMTALLHMTDEDLKA-LGIPMGP  185 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~---~~F~~eeIDgdaLl~LTeeDLKe-LGI~lGp  185 (197)
                      -++++..|+..+|..||.-.+ .+|.   ..|....+||..|+.||.+|+.. ++. .|+
T Consensus         8 l~~DP~~WS~~~V~~WL~w~~-~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~-~Gd   65 (93)
T 2qar_B            8 LRLQPIYWSRDDVAQWLKWAE-NEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH-SGD   65 (93)
T ss_dssp             GCSCGGGCCHHHHHHHHHHHH-HHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT-THH
T ss_pred             CCCChhhCCHHHHHHHHHHHH-HhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc-chH
Confidence            367889999999999997665 4554   23556789999999999999886 443 454

>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1

Probab=95.67  E-value=0.0027  Score=46.02  Aligned_cols=54  Identities=13%  Similarity=-0.068  Sum_probs=40.4

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhh-HH----HHhhcCcCHHHhcCCCHHHHhc-CCCCcch
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKY-SI----TFQAEEVDMTALLHMTDEDLKA-LGIPMGP  185 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY-~~----~F~~eeIDgdaLl~LTeeDLKe-LGI~lGp  185 (197)
                      -++++..|+...|..||.-. ..+| .+    .|....+||.+|+.||.+|+.+ .+ ..|+
T Consensus         7 i~~dP~~Ws~~~V~~WL~w~-~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~Gd   66 (82)
T 1sv0_C            7 LPLDPRDWTRADVWKWLINM-AVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP-VGGK   66 (82)
T ss_dssp             SBSSGGGCCHHHHHHHHHHH-HHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT-TTHH
T ss_pred             CCCChhhCCHHHHHHHHHHH-HHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC-CchH
Confidence            46788999999999999644 3333 21    2566679999999999999886 44 3454

>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A

Probab=95.38  E-value=0.0046  Score=45.81  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=37.5

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhH---HHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYS---ITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~---~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||.-. ..+|.   ..|...++||.+|+.||.+|+..
T Consensus         8 l~~DP~~WS~~~V~~WL~w~-~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~   58 (89)
T 1ji7_A            8 LRLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRY   58 (89)
T ss_dssp             GCSCGGGCCHHHHHHHHHHH-HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHH-HHhcCCCCCchhcCCCCHHHHHcCCHHHHHh
Confidence            46788999999999999655 33343   23455679999999999999874

>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}

Probab=93.55  E-value=0.064  Score=40.91  Aligned_cols=41  Identities=15%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             CCcchHHHHHHhCCChhh-HHHHhhcCcCHHHhcCCCHHHHhcC
Q 029178          137 KAETSVDGFLRSLGLEKY-SITFQAEEVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY-~~~F~~eeIDgdaLl~LTeeDLKeL  179 (197)
                      -...+|..||+.-|++.| ++.|.  .+++..|+.|+.+||+.+
T Consensus        24 Ssp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLf~Ltk~eL~~v   65 (99)
T 1wwu_A           24 SGPDEVRAWLEAKAFSPRIVENLG--ILTGPQLFSLNKEELKKV   65 (99)
T ss_dssp             CCHHHHHHHHHHHTCCTTHHHHTT--SSCHHHHHTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHH
Confidence            367899999999999998 88887  889999999999999963

>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.04  E-value=0.15  Score=38.92  Aligned_cols=40  Identities=15%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             CcchHHHHHHhCCChhh-HHHHhhcCcCHHHhcCCCHHHHhcC
Q 029178          138 AETSVDGFLRSLGLEKY-SITFQAEEVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY-~~~F~~eeIDgdaLl~LTeeDLKeL  179 (197)
                      ..++|..||+.-|++.| ++.|.  .+++..|+.|+.+||+.+
T Consensus        35 sp~EV~~WL~~kgFS~~tv~~Lg--~ltGaqLl~Ltk~eL~~v   75 (99)
T 2e8m_A           35 TPEDVKTWLQSKGFNPVTVNSLG--VLNGAQLFSLNKDELRTV   75 (99)
T ss_dssp             CTTHHHHHHHHHTCCHHHHHHTS--SSCHHHHHHCCHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHc--CCCHHHHHcCCHHHHHHH
Confidence            66899999999999998 88886  889999999999999973

>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.57  E-value=0.3  Score=36.56  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=36.8

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhc-CcCHHHhcCCCHHHHhcC
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAE-EVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~e-eIDgdaLl~LTeeDLKeL  179 (197)
                      -++++..|+...|..||.    +.+|...  .+..- .+||.+|+.|+.+|+.++
T Consensus        20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~F~~m~G~~LC~ls~edF~~~   72 (98)
T 1x66_A           20 VPADPTLWTQEHVRQWLEWAIKEYSLMEI--DTSFFQNMDGKELCKMNKEDFLRA   72 (98)
T ss_dssp             CCSSGGGCCTTHHHHHHHHHHHHTTCCSC--CGGGGTTCCHHHHHHCCHHHHHTT
T ss_pred             CCCChhhcCHHHHHHHHHHHHHhcCCCCC--ChhhCCCCCHHHHHcCCHHHHHHH
Confidence            356889999999999994    4555332  23443 699999999999998765

>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A

Probab=89.73  E-value=0.22  Score=36.49  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=35.3

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||.    +.+|..-  .|..-.+||.+|+.||.+|+..
T Consensus         6 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~m~G~~LC~ls~edF~~   56 (85)
T 1sv0_A            6 LPSDPRLWSREDVLVFLRFCVREFDLPKL--DFDLFQMNGKRLCLLTRADFGH   56 (85)
T ss_dssp             SCSSGGGCCHHHHHHHHHHHHHHTTCCCC--CGGGGCSCHHHHTTCCHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHH
Confidence            367789999999999995    4455331  1233369999999999999774

>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.18  E-value=0.23  Score=37.08  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=35.7

Q ss_pred             CcccCCCCcchHHHHHHhC----CChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFLRSL----GLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksL----GL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      +.++..|+...|..||.-.    +++--...|..-.+||.+|+.|+.+|+..
T Consensus        21 ~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~   72 (92)
T 2e8p_A           21 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRL   72 (92)
T ss_dssp             SSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHH
T ss_pred             CCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHH
Confidence            6789999999999999533    23211223444579999999999999775

>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.92  E-value=0.37  Score=35.89  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             CCcccCCCCcchHHHHH----HhCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFL----RSLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wL----ksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -+.++..|+...|..||    ++.+|...-  +..-.+||.+|+.||.+|+..
T Consensus        20 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~--~~~f~m~G~~LC~lskedF~~   70 (96)
T 2dkx_A           20 ITADPMDWSPSNVQKWLLWTEHQYRLPPMG--KAFQELAGKELCAMSEEQFRQ   70 (96)
T ss_dssp             CCSCGGGCCSSTHHHHHHHHHHHTTCCCCH--HHHSSCCHHHHHHSCHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHhCCHHHHHH
Confidence            46678899999999999    455665432  334469999999999999775

>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1

Probab=86.10  E-value=0.25  Score=36.59  Aligned_cols=47  Identities=9%  Similarity=0.092  Sum_probs=35.5

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||.    +.+|...  .|..-.+||..|+.||.+|+..
T Consensus        19 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~f~m~G~~LC~ls~edF~~   69 (91)
T 1sxd_A           19 IPYDPIHWSTDQVLHWVVWVMKEFSMTDI--DLTTLNISGRELCSLNQEDFFQ   69 (91)
T ss_dssp             CCSSGGGCCHHHHHHHHHHHHHHTTCCCS--CSGGGCSCHHHHHHSCHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHH
Confidence            356788999999999994    4455422  2334479999999999999775

>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1

Probab=84.57  E-value=1.3  Score=33.06  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhc-CcCHHHhcCCCHHHHhcC
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAE-EVDMTALLHMTDEDLKAL  179 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~e-eIDgdaLl~LTeeDLKeL  179 (197)
                      -++++..|+...|..||.    +.+|...  .+..- .+||.+|+.||.+|+...
T Consensus        23 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~~m~G~~LC~lt~edF~~~   75 (97)
T 1sxe_A           23 VPADPTLWSTDHVRQWLEWAVKEYGLPDV--NILLFQNIDGKELCKMTKDDFQRL   75 (97)
T ss_dssp             SCSSTTSCCHHHHHHHHHHHHHHHTCSSC--CGGGSTTCCHHHHTTCCHHHHTTT
T ss_pred             CCcchhccCHHHHHHHHHHHHHhcCCCCC--CHHhcCCCCHHHHHhCCHHHHHHH
Confidence            356789999999999994    4455322  23444 699999999999998764

>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*

Probab=81.56  E-value=0.48  Score=36.21  Aligned_cols=47  Identities=23%  Similarity=0.204  Sum_probs=34.8

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||.    +.+|...  .|..-.+||..|+.|+.+|+..
T Consensus        37 ip~DP~~WS~~~V~~WL~W~~~ef~L~~v--~~~~F~m~G~~LC~ls~edF~~   87 (110)
T 2jv3_A           37 IPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMSGAALCALGKECFLE   87 (110)
T ss_dssp             CCSSSTTCCHHHHHHHHHHHHHHHTCCCC--CTTTTCCCHHHHHHTHHHHHHH
T ss_pred             CCCChHhCCHHHHHHHHHHHHHhcCCCCC--ChhcCCCCHHHHHhCCHHHHHH
Confidence            356788999999999994    4444321  2233369999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2f3na1	64	a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat	8e-14
d1ucva_	81	a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal	3e-12
d1dxsa_	57	a.60.1.2 (A:) C-terminal domain of p73 {Human (Hom	4e-12
d1oxja1	62	a.60.1.2 (A:594-655) RNA-binding protein Smaug {Dr	4e-12
d1b0xa_	72	a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou	5e-12
d1x40a1	78	a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human	5e-10
d1kw4a_	70	a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaste	6e-10
d1pk3a1	63	a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly	4e-09
d1b4fa_	74	a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)	5e-09
d1v38a_	78	a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M	5e-09
d1ow5a_	60	a.60.1.2 (A:) Serine/threonine-protein kinase ste1	2e-07
d1wwva1	78	a.60.1.2 (A:8-85) Connector enhancer of kinase sup	3e-07
d2d8ca1	85	a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {	1e-05

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

 Score = 61.4 bits (149), Expect = 8e-14
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALE 194
           V  +L S+ L ++   F+  E++   L  +T ED   LG+  +G R+ I  AL 
Sbjct: 9   VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALR 62

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 3e-12
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
           +  +V  +L S+ + +Y   F A     +  +L M  +D++ALGI  MG +KKIL ++++
Sbjct: 6   SGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQT 65

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPMGPRKKILLALES 195
           S+  FL  LG       F ++ +  +  L ++T EDL AL IP   R  I   L+ 
Sbjct: 1   SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQD 56

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Length = 62

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALE 194
           + +  +L+SL L KY   F  + +    +L +T++ L+++G+  G   K+ L ++
Sbjct: 6   SGIGLWLKSLRLHKYIELF--KNMTYEEMLLITEDFLQSVGVTKGASHKLALCID 58

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 5e-12
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVDMT-ALLHMTDEDLKALGI-PMGPRKKILLALES 195
            SV  +L+++ +++Y   F A       A++HM+ +DL  +GI  +  + KIL ++++
Sbjct: 5   VSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA 62

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 5e-10
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 136 QKAETSVDGFLRSLGLEKYSITFQAEE-VDMTALLHMTDEDLKALGI-PMGPRKKILLAL 193
            +    +  FL S+ LE+Y + F       +     + D  L+ +GI P G R++IL  L
Sbjct: 5   SEVNVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQL 64

Query: 194 E 194
           +
Sbjct: 65  Q 65

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

 Score = 51.4 bits (123), Expect = 6e-10
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 142 VDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDLKA-LGIPMGPRKKILLALE 194
           V  F+R L G + Y   F  +E+D  ALL + ++ L   +G+ +GP  KI+  +E
Sbjct: 13  VSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVE 67

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 63

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.8 bits (116), Expect = 4e-09
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 142 VDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDL-KALGIPMGPRKKILLALE 194
           V  ++ S    L  +   F+  E+D  ALL +  E + K +G+ +GP  KI   + 
Sbjct: 6   VIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVN 61

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 5e-09
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 140 TSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALE 194
            +VD +L ++ + +Y  +F          +  M  ED+  +G+   G +KKIL +++
Sbjct: 7   NTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQ 63

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 5e-09
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGI-PMGPRKKILLALES 195
           ++  FL  + L++Y+ T      + +  L  + +  L  L I     R ++L A ES
Sbjct: 14  TIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES 70

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (103), Expect = 2e-07
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 141 SVDGFLRSLGLEKYSITF-QAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALES 195
            V  FL  +G  +Y  +F Q   V    + ++  + L ALG+  +G R KIL   +S
Sbjct: 2   FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKS 58

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES 195
           V  +LR L        F+  ++    LL +  + L+AL +  +G ++ IL  +E 
Sbjct: 12  VATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQ 66

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 142 VDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPM---GPRKKILLALE 194
           V  +L    + +Y      E      L+++T ED K   +        +++L  +E
Sbjct: 19  VADWLLENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIE 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	99.66
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	99.63
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	99.6
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	99.58
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	99.58
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	99.57
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	99.56
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	99.56
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	99.55
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	99.55
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	99.55
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	99.5
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	99.49
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	98.37
d1z1va1	70	Ste50p, N-terminal domain {Baker's yeast (Saccharo	94.8
d1sv0c_	82	Modulator of the activity of Ets (MAE, CG15085-PA)	90.96
d1ji7a_	77	Etv6 transcription factor pointed domain (Tel SAM)	87.05
d1sv0a_	77	Ets DNA-binding protein pokkuri (Yan) {Fruit fly (	87.01
d1sxda_	91	GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 1	86.74
d1sxea_	97	Transcriptional regulator ERG {Human (Homo sapiens	80.1

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.6e-17  Score=111.20  Aligned_cols=61  Identities=30%  Similarity=0.410  Sum_probs=58.9

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|+..+|+.||.++||++|.+.|.+++||++.|+.||++||++|||. +|||++|+.+|+.
T Consensus         2 ~~Ws~~~V~~wL~~~gl~~y~~~F~~~~i~g~~L~~l~~~dL~~lGi~~~g~r~~il~~i~~   63 (64)
T d2f3na1           2 QLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQ   63 (64)
T ss_dssp             GGCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHCCCHHHHHHHHHCCCcHHHhhcCCHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999999999999999998 9999999999975

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=107.85  Aligned_cols=55  Identities=33%  Similarity=0.395  Sum_probs=52.5

Q ss_pred             hHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          141 SVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       141 ~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      +|.+||+++||++|.+.|.+++++ ++.+..||++||++|||+.|||+||+++|+.
T Consensus         1 Sv~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~~~hr~kilk~i~~   56 (57)
T d1dxsa_           1 SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQD   56 (57)
T ss_dssp             CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred             CHHHHHHHCCcHHHHHHHHHccCCcHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHh
Confidence            588999999999999999999986 9999999999999999999999999999975

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.9e-16  Score=107.53  Aligned_cols=56  Identities=30%  Similarity=0.384  Sum_probs=52.8

Q ss_pred             chHHHHHHhCCChhhHHHHhhcC-cCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          140 TSVDGFLRSLGLEKYSITFQAEE-VDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       140 ~~V~~wLksLGL~kY~~~F~~ee-IDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +.|.+||.++||++|.+.|.+++ +|++.|..||++||++|||+ +|||+||+++|+.
T Consensus         1 p~V~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril~~i~~   58 (60)
T d1ow5a_           1 PFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKS   58 (60)
T ss_dssp             CHHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999865 89999999999999999998 9999999999975

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-16  Score=110.90  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=60.8

Q ss_pred             cccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          132 KKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       132 k~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ++...|+..+|+.||+.+|+++|.+.|.+|+|||+.|+.||++||++|||. .|||++|+++|+.
T Consensus         2 epv~~Wt~~~V~~WL~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lgI~~~ghr~~il~~i~~   66 (78)
T d1wwva1           2 EPVETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQ   66 (78)
T ss_dssp             CCTTTCCTTTHHHHHHHHCHHHHTSCHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHcchHHHHHHHHHcCCCcHHHHHhhHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999 9999999999864

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.5e-15  Score=107.56  Aligned_cols=61  Identities=23%  Similarity=0.414  Sum_probs=56.7

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|...+|.+||+++||++|.+.|.+++|+ ++.|..|+++||++|||+ +|||+||+.+|+.
T Consensus         8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~~hr~kil~ai~~   70 (78)
T d1v38a_           8 RRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES   70 (78)
T ss_dssp             CCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHcCccchHHHccCCHHHHhHcCCCCHHHHHHHHHHHHH
Confidence            347889999999999999999999999997 688999999999999998 9999999999975

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.57  E-value=1.5e-15  Score=104.94  Aligned_cols=65  Identities=29%  Similarity=0.411  Sum_probs=60.7

Q ss_pred             CcccCCCCcchHHHHHHhC-CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          131 KKKDQQKAETSVDGFLRSL-GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksL-GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      |.+...|+..+|+.||+++ |+++|.+.|.+|+|||++|+.||++||+++|+. .|||++|+.+|+.
T Consensus         2 ~~pv~~Ws~~dV~~wL~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~~~L~~~~~~~~g~r~~i~~~I~~   68 (70)
T d1kw4a_           2 RPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVES   68 (70)
T ss_dssp             CCCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             CCchhcCCHHHHHHHHHhCCCcHHHHHHHHHcCccHHHHHHccHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567889999999999998 699999999999999999999999999998887 9999999999975

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=105.60  Aligned_cols=61  Identities=23%  Similarity=0.412  Sum_probs=56.1

Q ss_pred             CCCCcchHHHHHHhCCChhhHHHHhhcCcCH-HHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          135 QQKAETSVDGFLRSLGLEKYSITFQAEEVDM-TALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       135 ~~W~~~~V~~wLksLGL~kY~~~F~~eeIDg-daLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..|...+|.+||+++||++|.+.|.+++||+ +.|..++++||++|||+ +|||+||+++|+.
T Consensus         2 d~~~~~~V~~WL~~lgL~~Y~~~F~~~~idg~~~l~~l~~~~L~~lGI~~~ghr~ril~~i~~   64 (74)
T d1b4fa_           2 DYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQV   64 (74)
T ss_dssp             CCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHcCCCChhHHHHHHHHHHH
Confidence            3456788999999999999999999999995 89999999999999998 9999999999864

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.8e-15  Score=105.72  Aligned_cols=58  Identities=29%  Similarity=0.582  Sum_probs=54.5

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      +..+|.+||+++||++|.+.|.+++|| ++.|..|+++||++|||+ +|||+||+.+|+.
T Consensus         3 ~v~sV~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l~~~dL~~lGI~~~ghr~ki~~ai~~   62 (72)
T d1b0xa_           3 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA   62 (72)
T ss_dssp             SSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHCCcHHHHHHHHHcCCCcHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            568999999999999999999999997 689999999999999998 9999999999864

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.55  E-value=1.4e-15  Score=104.96  Aligned_cols=57  Identities=25%  Similarity=0.453  Sum_probs=52.4

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      |...+|.+||+++||++|.+.|.++.+  +.|..||++||++|||+.|||+||+.+|+.
T Consensus         3 ~g~~~v~~WL~~l~L~~Y~~~F~~~~~--d~l~~lt~~dL~~lGI~~GhRkkil~~I~~   59 (62)
T d1oxja1           3 VGMSGIGLWLKSLRLHKYIELFKNMTY--EEMLLITEDFLQSVGVTKGASHKLALCIDK   59 (62)
T ss_dssp             TTCTTHHHHHHHTTCGGGGGGGTTCCH--HHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHCCcHHHHHHHHhCCH--HHHHhCCHHHHHHcCCCHHHHHHHHHHHHH
Confidence            677899999999999999999976555  689999999999999999999999999975

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-15  Score=107.06  Aligned_cols=59  Identities=32%  Similarity=0.560  Sum_probs=55.2

Q ss_pred             CCcchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+.+|.+||+++||++|.+.|.+++|| ++.|..||++||++|||+ +|||+||+++|+.
T Consensus         5 ~~~~sV~~WL~~lgL~qY~~~F~~~gi~~~~~L~~lt~~dL~~lGI~~~ghr~kIl~~i~~   65 (81)
T d1ucva_           5 SSGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQT   65 (81)
T ss_dssp             CCCSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHCccHHHHHHHHHcCCchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3677999999999999999999999997 699999999999999998 9999999999874

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=1.3e-15  Score=103.67  Aligned_cols=59  Identities=24%  Similarity=0.224  Sum_probs=55.3

Q ss_pred             CCcchHHHHHHhC--CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCC-CcchHHHHHHHHHh
Q 029178          137 KAETSVDGFLRSL--GLEKYSITFQAEEVDMTALLHMTDEDLKALGI-PMGPRKKILLALES  195 (197)
Q Consensus       137 W~~~~V~~wLksL--GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI-~lGpRKKIL~aIq~  195 (197)
                      |+..+|++||+++  |+++|.+.|.+|+|||++|+.||++||+++|+ +.|||+||+++|++
T Consensus         1 Ws~~dV~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~edL~~~~~~~~G~r~ki~~~I~~   62 (63)
T d1pk3a1           1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNK   62 (63)
T ss_dssp             CCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccccHHHHHHHHHHhCcCHHHHHhcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence            8999999999998  79999999999999999999999999998655 59999999999985

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.4e-15  Score=106.69  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             CCcccCCCCcchHHHHHHhCCChhhHHHHhhcCcCHHHhcCCCHHHHhc--CCCC-cchHHHHHHHHHh
Q 029178          130 SKKKDQQKAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKA--LGIP-MGPRKKILLALES  195 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe--LGI~-lGpRKKIL~aIq~  195 (197)
                      +.++...|+..+|+.||+.+||++|.+.|  ++|||+.|+.||++||++  |||. .|||++|+.+|+.
T Consensus         7 ~~~~V~~Ws~~dV~~WL~~~gl~~Y~~~F--~~IdG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~   73 (85)
T d2d8ca1           7 TMKEVVYWSPKKVADWLLENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIET   73 (85)
T ss_dssp             CCSCCSSCCTTHHHHHHHHTTCTTTTTTT--TTCCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHHCcHHHHHHHH--HhccHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHH
Confidence            34567899999999999999999999999  679999999999999997  9998 9999999999974

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-14  Score=103.64  Aligned_cols=57  Identities=28%  Similarity=0.528  Sum_probs=53.1

Q ss_pred             cchHHHHHHhCCChhhHHHHhhcCcC-HHHhcCCCHHHHhcCCCC-cchHHHHHHHHHh
Q 029178          139 ETSVDGFLRSLGLEKYSITFQAEEVD-MTALLHMTDEDLKALGIP-MGPRKKILLALES  195 (197)
Q Consensus       139 ~~~V~~wLksLGL~kY~~~F~~eeID-gdaLl~LTeeDLKeLGI~-lGpRKKIL~aIq~  195 (197)
                      ..+|.+||+++||++|.+.|.+++++ ++.|..|+++||++|||+ +|||+||+++|+.
T Consensus         8 ~~dV~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~ghr~kil~~i~~   66 (78)
T d1x40a1           8 NVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQI   66 (78)
T ss_dssp             CCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHCchHHHHHHHHHcCCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            44799999999999999999999875 899999999999999998 9999999999875

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.1e-07  Score=64.29  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=53.4

Q ss_pred             CcchHHHHHHhCCChhhHHHHhhcCc-CHHHhcCCCHHHHhcCCCCcchHHHHHHHHHh
Q 029178          138 AETSVDGFLRSLGLEKYSITFQAEEV-DMTALLHMTDEDLKALGIPMGPRKKILLALES  195 (197)
Q Consensus       138 ~~~~V~~wLksLGL~kY~~~F~~eeI-DgdaLl~LTeeDLKeLGI~lGpRKKIL~aIq~  195 (197)
                      .+.+|++||.+|||+.|.+.|.+..+ ++..|-.++-|||.+|-|+-.+|.+|.++|.+
T Consensus         2 tD~Si~sfLt~LGc~~~id~F~~q~l~~v~qLe~~sleDL~~mkIp~~~r~~IWK~l~e   60 (67)
T d1rg6a_           2 TDCSIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD   60 (67)
T ss_dssp             CCCSHHHHHHHTTCCSSHHHHHHHTCCSGGGGSSCCHHHHHTTTCCTHHHHHHHHHHHH
T ss_pred             CcchHHHHHHhcChHHHHHHHHHccchhHHHHhhcCHHHHHcCcCcHHHHHHHHHHHHH
Confidence            46889999999999999999988765 69999999999999999999999999998864

>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ste50p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.011  Score=40.95  Aligned_cols=55  Identities=18%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             CCCcchHHHHH-HhCCChh---hHHHHhhcCcCHHHhcCCCHHHHhcCCCC---cchHHHHH
Q 029178          136 QKAETSVDGFL-RSLGLEK---YSITFQAEEVDMTALLHMTDEDLKALGIP---MGPRKKIL  190 (197)
Q Consensus       136 ~W~~~~V~~wL-ksLGL~k---Y~~~F~~eeIDgdaLl~LTeeDLKeLGI~---lGpRKKIL  190 (197)
                      +|+..+|..|+ .+||+.+   .++.|.+|.|+++.|..||-+|=|++==.   .+-|-||+
T Consensus         2 ~Ws~deVv~wc~~~L~l~~~d~l~~~lr~n~I~Gd~L~eLtL~DCKeLc~~d~~~aikfKi~   63 (70)
T d1z1va1           2 QWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKIL   63 (70)
T ss_dssp             CCCHHHHHHHHHHHHCCCTTSHHHHHHHHTTCCTTTGGGCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCCCChHHHHHHHcCCchhhhhHhhHHHHHHHcCchHHHHHHHHHH
Confidence            69999999998 5678765   78888999999999999999999885443   34555543

>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE, CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Modulator of the activity of Ets (MAE, CG15085-PA)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.96  E-value=0.079  Score=36.72  Aligned_cols=47  Identities=15%  Similarity=-0.021  Sum_probs=36.4

Q ss_pred             CCcccCCCCcchHHHHHH------hCCChhhHHHHhhcCcCHHHhcCCCHHHHhc
Q 029178          130 SKKKDQQKAETSVDGFLR------SLGLEKYSITFQAEEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk------sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKe  178 (197)
                      -++++..|+...|..||+      +++|..-  .+..=.+||..|+.||.+|...
T Consensus         7 ip~DP~~Wt~~~V~~WL~~~w~~~ef~l~~~--~~~~F~m~G~~LC~ls~edF~~   59 (82)
T d1sv0c_           7 LPLDPRDWTRADVWKWLINMAVSEGLEVTAE--LPQKFPMNGKALCLMSLDMYLC   59 (82)
T ss_dssp             SBSSGGGCCHHHHHHHHHHHHHHHTCCCCTH--HHHTCCSCHHHHHHCCHHHHHH
T ss_pred             CCcChHhCCHHHHHHHHHHHHHHcCCCCCCC--ChhhcCCCHHHHHcCCHHHHHh
Confidence            478899999999999995      4455432  2444469999999999999764

>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel SAM) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Etv6 transcription factor pointed domain (Tel SAM)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.05  E-value=0.16  Score=34.72  Aligned_cols=52  Identities=23%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             CcccCCCCcchHHHHHHhCCChhhHH---HHhhcCcCHHHhcCCCHHHHhcCCCC-cc
Q 029178          131 KKKDQQKAETSVDGFLRSLGLEKYSI---TFQAEEVDMTALLHMTDEDLKALGIP-MG  184 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLksLGL~kY~~---~F~~eeIDgdaLl~LTeeDLKeLGI~-lG  184 (197)
                      +.++..|+...|..||.-. ..+|.=   .+..=.+||..|+.||.+|+... .+ .|
T Consensus         9 ~~DP~~Wt~~~V~~WL~w~-~~ef~L~~i~~~~F~m~G~~LC~lt~~dF~~r-~p~~G   64 (77)
T d1ji7a_           9 RLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYR-SPHSG   64 (77)
T ss_dssp             CSCGGGCCHHHHHHHHHHH-HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHH-CTTTH
T ss_pred             CCChhhcCHHHHHHHHHHH-HHHcCCCCCChhccCCCHHHHHcCCHHHHHhH-CCCcH
Confidence            5678999999999999644 222220   12222589999999999998753 45 45

>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Ets DNA-binding protein pokkuri (Yan)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.01  E-value=0.11  Score=35.50  Aligned_cols=52  Identities=23%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             CCcccCCCCcchHHHHHHhC----CChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCC-cc
Q 029178          130 SKKKDQQKAETSVDGFLRSL----GLEKYSITFQAEEVDMTALLHMTDEDLKALGIP-MG  184 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLksL----GL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~-lG  184 (197)
                      -++++..|+...|..||.-.    +|...  .+..=.+||..|+.||.+|+.+. .+ .|
T Consensus         5 ip~DP~~Wt~~~V~~Wl~w~~~ef~L~~i--~~~~F~m~G~~LC~ls~~dF~~r-~p~~G   61 (77)
T d1sv0a_           5 LPSDPRLWSREDVLVFLRFCVREFDLPKL--DFDLFQMNGKRLCLLTRADFGHR-CPGAG   61 (77)
T ss_dssp             SCSSGGGCCHHHHHHHHHHHHHHTTCCCC--CGGGGCSCHHHHTTCCHHHHHHH-STTTH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHhcCCCCC--CccccCCCHHHHHcCCHHHHHhH-CCCcH
Confidence            36788999999999999543    44221  02222589999999999998753 34 44

>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: GABP-alpha subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.74  E-value=0.13  Score=36.49  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=38.1

Q ss_pred             CCcccCCCCcchHHHHHH----hCCChhhHHHHhhcCcCHHHhcCCCHHHHhcCCCCcch
Q 029178          130 SKKKDQQKAETSVDGFLR----SLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMGP  185 (197)
Q Consensus       130 ~rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~eeIDgdaLl~LTeeDLKeLGI~lGp  185 (197)
                      -++++..|+...|..||.    +.+|.. .+ |..=.+||..|+.||.+|+... .+.|+
T Consensus        19 iP~DP~~WT~~~V~~WL~W~~~ef~L~~-v~-~~~F~m~G~~LC~Lt~edF~~r-~p~Gd   75 (91)
T d1sxda_          19 IPYDPIHWSTDQVLHWVVWVMKEFSMTD-ID-LTTLNISGRELCSLNQEDFFQR-VPRGE   75 (91)
T ss_dssp             CCSSGGGCCHHHHHHHHHHHHHHTTCCC-SC-SGGGCSCHHHHHHSCHHHHHHH-CTTCH
T ss_pred             CCCChhhcCHHHHHHHHHHHHHHhCCCC-CC-hhhcCCCHHHHHhCCHHHHHHH-CCChh
Confidence            356789999999999996    445532 11 3333689999999999997754 34564

>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: Pointed domain
domain: Transcriptional regulator ERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=1.6  Score=30.72  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             CcccCCCCcchHHHHHH----hCCChhhHHHHhh-cCcCHHHhcCCCHHHHhc
Q 029178          131 KKKDQQKAETSVDGFLR----SLGLEKYSITFQA-EEVDMTALLHMTDEDLKA  178 (197)
Q Consensus       131 rk~~~~W~~~~V~~wLk----sLGL~kY~~~F~~-eeIDgdaLl~LTeeDLKe  178 (197)
                      ++++..|+...|..||.    +.+|.. . .+.. ..+||..|+.||.+|+.+
T Consensus        24 P~DP~~Wt~~~V~~WL~W~~~ef~L~~-i-~~~~F~~m~G~~LC~lt~edF~~   74 (97)
T d1sxea_          24 PADPTLWSTDHVRQWLEWAVKEYGLPD-V-NILLFQNIDGKELCKMTKDDFQR   74 (97)
T ss_dssp             CSSTTSCCHHHHHHHHHHHHHHHTCSS-C-CGGGSTTCCHHHHTTCCHHHHTT
T ss_pred             CCChhhcCHHHHHHHHHHHHHHcCCCC-C-ChhhcCCCCHHHHHhcCHHHHHH
Confidence            46789999999999995    334422 1 1222 258999999999999875