Citrus Sinensis ID: 029197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICTY
ccccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
cccccccccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEc
mlggggcdgairraaGPELLEACyrvpevgfgircptgearitpgfklpashvihtvgpiygvtinpeaSLRSAYKNSLSLAKAnniqyiafpaiscglyWCTLFCLQMISTIFGWrrqgncclfhledvknfevgtssklMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRfskmsklhfplnfccklqicty
mlggggcdgaiRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNfccklqicty
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICTY
********GAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICT*
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQ****************HFPLNFCCKLQICTY
MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICTY
*LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICTY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYWCTLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRGILQEIGLQNAQIMSICRFSKMSKLHFPLNFCCKLQICTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q87JZ5170 Macro domain-containing p yes no 0.502 0.582 0.61 2e-26
Q8P5Z8179 Macro domain-containing p yes no 0.593 0.653 0.532 2e-26
Q8PHB6179 Macro domain-containing p yes no 0.502 0.553 0.588 1e-25
Q8Y2K1171 Macro domain-containing p yes no 0.477 0.549 0.574 8e-23
Q72M93175 Macro domain-containing p yes no 0.675 0.76 0.425 2e-22
Q8EYT0175 Macro domain-containing p yes no 0.675 0.76 0.425 2e-22
Q88SK6172 Macro domain-containing p yes no 0.477 0.546 0.564 6e-22
Q9HXU7173 Macro domain-containing p yes no 0.477 0.543 0.554 1e-21
B7LT90177 O-acetyl-ADP-ribose deace yes no 0.497 0.553 0.564 2e-21
D2TT52177 O-acetyl-ADP-ribose deace yes no 0.497 0.553 0.584 5e-21
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function desciption
 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           MLGGGG DGAI RAAGP L+ ACY V +V  GIRCP G+ARIT    L A +VIH VGPI
Sbjct: 27  MLGGGGVDGAIHRAAGPALINACYAVDDVD-GIRCPFGDARITEAGNLNARYVIHAVGPI 85

Query: 61  YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
           Y    +P+  L SAY+ SL LA AN+ Q +A PAISCG+Y
Sbjct: 86  YDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVY 125

Vibrio parahaemolyticus (taxid: 670)
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function description
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1 Back     alignment and function description
>sp|Q72M93|Y3295_LEPIC Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=LIC_13295 PE=4 SV=1 Back     alignment and function description
>sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=LA_4133 PE=4 SV=1 Back     alignment and function description
>sp|Q88SK6|Y3408_LACPL Macro domain-containing protein lp_3408 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_3408 PE=4 SV=1 Back     alignment and function description
>sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3693 PE=4 SV=1 Back     alignment and function description
>sp|B7LT90|YMDB_ESCF3 O-acetyl-ADP-ribose deacetylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ymdB PE=3 SV=2 Back     alignment and function description
>sp|D2TT52|YMDB_CITRI O-acetyl-ADP-ribose deacetylase OS=Citrobacter rodentium (strain ICC168) GN=ymdB PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
241865263139 appr-1-p processing enzyme family protei 0.573 0.812 0.773 6e-43
297736490190 unnamed protein product [Vitis vinifera] 0.720 0.747 0.616 8e-41
225448685231 PREDICTED: macro domain-containing prote 0.720 0.614 0.616 1e-40
255559685269 Protein LRP16, putative [Ricinus communi 0.507 0.371 0.78 3e-40
357436403233 Appr-1-p processing enzyme family protei 0.507 0.429 0.8 4e-40
255636888201 unknown [Glycine max] 0.507 0.497 0.78 2e-39
356552646236 PREDICTED: macro domain-containing prote 0.507 0.423 0.78 2e-39
449457407247 PREDICTED: macro domain-containing prote 0.507 0.404 0.77 3e-39
449491648247 PREDICTED: macro domain-containing prote 0.507 0.404 0.77 4e-39
307135847255 appr-1-p processing enzyme family protei 0.680 0.525 0.589 5e-39
>gi|241865263|gb|ACS68709.1| appr-1-p processing enzyme family protein [Sonneratia alba] gi|241865496|gb|ACS68780.1| appr-1-p processing enzyme family protein [Sonneratia alba] Back     alignment and taxonomy information
 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 96/115 (83%), Gaps = 2/115 (1%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           MLGGGG DGAI RAAGPELLEACY+VPEV  GIRCPTGEARITPGFKLPASHVIHTVGPI
Sbjct: 16  MLGGGGADGAIHRAAGPELLEACYKVPEVCPGIRCPTGEARITPGFKLPASHVIHTVGPI 75

Query: 61  YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGL--YWCTLFCLQMISTI 113
           Y    +PEASLRSAYKNSL++AK NNIQYIAFPAISCG+  Y      +  IST+
Sbjct: 76  YDTDKDPEASLRSAYKNSLAVAKENNIQYIAFPAISCGVFRYPYDEAAMVAISTV 130

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255636888|gb|ACU18777.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356552646|ref|XP_003544674.1| PREDICTED: macro domain-containing protein XCC3184-like [Glycine max] Back     alignment and taxonomy information
>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135847|gb|ADN33717.1| appr-1-p processing enzyme family protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.507 0.389 0.75 1.1e-37
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.472 0.537 0.539 4.3e-22
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.472 0.537 0.539 4.3e-22
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.497 0.553 0.534 1.3e-20
UNIPROTKB|Q3AEI4181 CHY_0594 "Putative uncharacter 0.497 0.541 0.524 4.4e-20
TIGR_CMR|CHY_0594181 CHY_0594 "conserved hypothetic 0.497 0.541 0.524 4.4e-20
UNIPROTKB|Q9BQ69325 MACROD1 "O-acetyl-ADP-ribose d 0.573 0.347 0.439 1.9e-19
UNIPROTKB|A1Z1Q3 448 MACROD2 "O-acetyl-ADP-ribose d 0.477 0.209 0.529 3.6e-19
ASPGD|ASPL0000035716 374 AN3153 [Emericella nidulans (t 0.477 0.251 0.466 7.5e-19
MGI|MGI:1920149 475 Macrod2 "MACRO domain containi 0.477 0.197 0.509 2e-18
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 75/100 (75%), Positives = 84/100 (84%)

Query:     1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
             MLGGGG DGAI RAAGP+L  ACY VPEV  G+RCPTGEARITPGF LPAS VIHTVGPI
Sbjct:   109 MLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARITPGFNLPASRVIHTVGPI 168

Query:    61 YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
             Y   +NP+ SL ++YKNSL +AK NNI+YIAFPAISCG+Y
Sbjct:   169 YDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIY 208
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQ69 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035716 AN3153 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 3e-51
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 2e-45
pfam01661117 pfam01661, Macro, Macro domain 1e-41
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 2e-31
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 3e-26
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 3e-26
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 1e-22
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 2e-20
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 3e-20
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 3e-20
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 7e-16
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 4e-09
cd02904186 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l 4e-05
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  162 bits (412), Expect = 3e-51
 Identities = 58/101 (57%), Positives = 70/101 (69%), Gaps = 7/101 (6%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           +LGGGG DGAI RAAGPELLE C  +        CPTGEA IT G+ LPA +VIHTVGP+
Sbjct: 25  LLGGGGVDGAIHRAAGPELLEECREL------RGCPTGEAVITSGYNLPAKYVIHTVGPV 78

Query: 61  YGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
           +    + EA  L S Y+NSL LA+ N ++ IAFPAIS G+Y
Sbjct: 79  WRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVY 119

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information
>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
PRK04143264 hypothetical protein; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 99.98
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 99.97
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.95
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 99.95
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.95
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.94
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.9
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.88
PRK13341725 recombination factor protein RarA/unknown domain f 99.88
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.73
PHA02595154 tk.4 hypothetical protein; Provisional 99.44
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 98.84
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 97.7
TIGR02452266 conserved hypothetical protein TIGR02452. Members 97.68
PF10154510 DUF2362: Uncharacterized conserved protein (DUF236 96.7
COG4295285 Uncharacterized protein conserved in bacteria [Fun 95.83
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=1.7e-39  Score=266.25  Aligned_cols=139  Identities=21%  Similarity=0.255  Sum_probs=127.5

Q ss_pred             CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197            1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS   80 (197)
Q Consensus         1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~   80 (197)
                      |.++|||++||+++||++|++||++..+. + +++++|++++|++|+||||||||+|+|.|+.+ .+++.|++||++||+
T Consensus        45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~-~-g~~~~G~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~  121 (186)
T cd02904          45 IDLKGEVGNALEKKGGKEFVEAVKELRKS-N-GPLEIAGAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLA  121 (186)
T ss_pred             cCCCCcHhHHHHHHcCHHHHHHHHHHHHh-c-CCCCCCCEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHH
Confidence            67999999999999999999999988632 3 49999999999999999999999999999764 457899999999999


Q ss_pred             HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHH
Q 029197           81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLD  153 (197)
Q Consensus        81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~  153 (197)
                      .|++++++|||||+||||++|||++++|++|  +|.+|+++     .+++++++|      +||++|+++++.|.
T Consensus       122 ~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~-----~~~~~l~~I------~fv~~~~~~~~~y~  185 (186)
T cd02904         122 AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVS-----TMSSSIKQI------YFVLFDSESIGIYV  185 (186)
T ss_pred             HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHh-----cCCCCccEE------EEEECCHHHHHHhh
Confidence            9999999999999999999999999999988  99999984     246789999      99999999999985

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information
>TIGR02452 conserved hypothetical protein TIGR02452 Back     alignment and domain information
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans Back     alignment and domain information
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 1e-20
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 1e-18
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 3e-10
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 1e-05
1vhu_A211 Crystal Structure Of A Putative Phosphoesterase Len 4e-05
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 4e-05
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 4e-05
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 7e-05
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 7e-05
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 1e-04
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 1e-04
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 1e-04
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 2e-04
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 2e-04
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 2e-04
1zr5_A214 Crystal Structure Of The Macro-Domain Of Human Core 3e-04
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           + GGGG DGAI RAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP+
Sbjct: 28  LXGGGGVDGAIHRAAGPALLDACLKVRQQQG--DCPTGHAVITLAGDLPAKAVVHTVGPV 85
Query: 61  Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
           + G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y
Sbjct: 86  WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVY 126
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase Length = 211 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
1spv_A184 Putative polyprotein/phosphatase; structural genom 4e-51
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 3e-50
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 7e-50
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 5e-49
2x47_A235 Macro domain-containing protein 1; signaling prote 6e-49
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 7e-48
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 8e-48
1vhu_A211 Hypothetical protein AF1521; structural genomics, 1e-44
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 3e-43
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 8e-43
3gqe_A168 Non-structural protein 3; macro domain, X domain, 4e-41
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 4e-41
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 5e-39
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 2e-38
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 3e-37
2vri_A174 Non-structural protein 3; RNA replication, nucleot 1e-36
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 2e-19
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 5e-07
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 1e-05
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
 Score =  161 bits (411), Expect = 4e-51
 Identities = 53/101 (52%), Positives = 66/101 (65%), Gaps = 3/101 (2%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
           ++GGGG DGAI RAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP+
Sbjct: 28  LMGGGGVDGAIHRAAGPALLDACLKVRQQQGD--CPTGHAVITLAGDLPAKAVVHTVGPV 85

Query: 61  Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
           + G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y
Sbjct: 86  WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVY 126
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 99.97
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 99.97
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 99.97
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 99.97
2vri_A174 Non-structural protein 3; RNA replication, nucleot 99.97
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 99.96
4gua_A 670 Non-structural polyprotein; viral precursor polypr 99.93
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.85
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.84
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.82
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 99.03
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.8e-39  Score=267.00  Aligned_cols=147  Identities=18%  Similarity=0.288  Sum_probs=132.9

Q ss_pred             CCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCC-cHHHHHHHHHHHHH
Q 029197            2 LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNSLS   80 (197)
Q Consensus         2 ~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~-~~~~L~~~~~~~L~   80 (197)
                      .++|||++||+++||++|++||++...   ++++++|++++|++|+|+||||||+|||.|..+.. +.+.|++||+++|+
T Consensus        66 ~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~  142 (221)
T 3q71_A           66 LSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECME  142 (221)
T ss_dssp             TTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHH
Confidence            478999999999999999999999862   45899999999999999999999999999987653 46899999999999


Q ss_pred             HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecch--hHHHHHHHHH
Q 029197           81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQ--LVYQSLDQKI  156 (197)
Q Consensus        81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~--~~~~~f~~~~  156 (197)
                      .|++++++|||||+||||++|||++++|++|  +|++|+++     ....++++|      +||++++  ++|++|.++|
T Consensus       143 ~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~-----~~~~~l~~V------~fv~f~~d~~~~~~f~~~l  211 (221)
T 3q71_A          143 ITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSK-----NQLKTLQEV------HFLLHPSDHENIQAFSDEF  211 (221)
T ss_dssp             HHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHH-----CCCSSCCEE------EEEECTTCHHHHHHHHHHH
T ss_pred             HHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHH-----cCCCCCCEE------EEEEeCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999988  99999985     235789999      9999964  6789999999


Q ss_pred             Hhhhhh
Q 029197          157 RGILQE  162 (197)
Q Consensus       157 ~~~~~~  162 (197)
                      +++++.
T Consensus       212 ~~r~~~  217 (221)
T 3q71_A          212 ARRANG  217 (221)
T ss_dssp             HHHHC-
T ss_pred             HHHccC
Confidence            998764
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 8e-22
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 5e-20
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 3e-18
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 3e-18
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 2e-14
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 5e-11
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 8e-22
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 39/196 (19%)

Query: 1   MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPG----------FKLPA 50
              GGG D A+    G +  E  +R      G     G A +              +   
Sbjct: 68  GYLGGGFDKALYNYFGGKPFETWFR--NQLGGRYHTVGSATVVDLQRCLEEKTIECRDGI 125

Query: 51  SHVIHTVGPIYGVTINP---------EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYW 101
            ++IH    +                   + +A  N+L +    +I  +  P +  G   
Sbjct: 126 RYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNAL-MHSPKDIDGLIIPGLCTGYAG 184

Query: 102 C--TLFCLQMISTIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQ---SLDQKI 156
               + C  M   +          L+   D  + E+  +  +M + Q  ++       KI
Sbjct: 185 VPPIISCKSMAFALR---------LYMAGDHISKEL-KNVLIMYYLQYPFEPFFPESCKI 234

Query: 157 RGILQEIGLQNAQIMS 172
               Q++G+    + S
Sbjct: 235 E--CQKLGIDIEMLKS 248
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 99.98
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 99.94
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.93
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.7
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-36  Score=243.76  Aligned_cols=146  Identities=23%  Similarity=0.306  Sum_probs=133.3

Q ss_pred             CCCCChHHHHHHHhhCHHHHHHHhhccccCCCCccCCCcEEEeecCCCCCCeEEEecCCccCCCCCcHHHHHHHHHHHHH
Q 029197            1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS   80 (197)
Q Consensus         1 L~~ggGva~AI~~aaG~~l~~e~~~~~~~~~g~~~~~G~vvvT~ag~L~~k~IIH~v~P~~~~~~~~~~~L~~~~~~~L~   80 (197)
                      |.++||+++||++++|++|++||++..+. + +++++|++++|++|+||||||||+|+|.|+.+ .+.+.|+++|++||+
T Consensus        39 l~~~~gv~~ai~~~~G~~l~~e~~~~~~~-~-~~~~~g~~~vT~~~~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~  115 (188)
T d1yd9a1          39 FYIGGEVGSTLEKKGGKEFVEAVLELRKK-N-GPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLA  115 (188)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHH-H-CSCCTTCEEEEECTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHh-c-cccCCCCeeecccCCCCceEEeeeccccCCCc-chHHHHHHHHHHHHH
Confidence            56899999999999999999999987643 3 38999999999999999999999999999875 457899999999999


Q ss_pred             HHHHcCCceEeecccccCCCCccHHHHHHHH--HHHHhHhhcccccccccCcceeccccceEEEecchhHHHHHHHHHHh
Q 029197           81 LAKANNIQYIAFPAISCGLYWCTLFCLQMIS--TIFGWRRQGNCCLFHLEDVKNFEVGTSSKLMSFEQLVYQSLDQKIRG  158 (197)
Q Consensus        81 ~A~~~~~~SIAfPaLgtG~~g~p~~~~A~i~--~i~~f~~~~~~~~~~~~~l~~I~~~~~~~~v~~d~~~~~~f~~~~~~  158 (197)
                      .|++++++|||||+||||++|||++++|++|  ++.+|+++     ....++++|      +||++|+++++.|.++|.+
T Consensus       116 ~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~-----~~~~~l~~V------~~v~~~~~~~~~f~~~l~k  184 (188)
T d1yd9a1         116 LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVS-----TMSSSIKTV------YFVLFDSESIGIYVQEMAK  184 (188)
T ss_dssp             HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTT-----CTTCCCCEE------EEECCSHHHHHHHHHHHTT
T ss_pred             HHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh-----cCCCCccEE------EEEeCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988  99999874     356789999      9999999999999999976


Q ss_pred             hh
Q 029197          159 IL  160 (197)
Q Consensus       159 ~~  160 (197)
                      +.
T Consensus       185 i~  186 (188)
T d1yd9a1         185 LD  186 (188)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure