Citrus Sinensis ID: 029209

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
cEEEEcccccHHHHHHHHHccccccEEEccccEEEcccccccccEEEEEEEcccccEEEcccccccccccEEEEEEEcccccccEEEEEcccccccccccccEEEccccccccEEEEEcccEEEcEEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHccccccccEEcccHHHHHHHHHHHHccccccccc
cEEEEcccccHHHHHHHHHcccEEEEEEcccEEEEccccccccEEEEEEEEccccEEEEcccccHcccccccEEEEEEccccccEEEEEEcccccccccccEEEEEcccccEEEEEEccccHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccc
msitasndlnEETLDALNKqghevdafgIGTYLVTCYAQAALGCVFKLVeinkqpriklsedvskvsipckkrsyrlygkegyplvdimtgenepppkvgerilcrhpfneskrayvvPQKVEELLKcywpgssdkrredlptlKDTRERCIKQLEQMrpdhmrrlnptpykvsvSAKLYDFIHFLwlneapvgelq
msitasndlnEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKqpriklsedvskvsipckkrsyrlygkegypLVDIMTGENEPPPKVGERILCrhpfneskrayvvpqkvEELLkcywpgssdkrredlptlkdTRERCIKQleqmrpdhmrrlnptPYKVSVSAKLYDFIHFLWLNEAPVGELQ
MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
********************GHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTG*******VGERILCRHPFNESKRAYVVPQKVEELLKCYWP**************************************PYKVSVSAKLYDFIHFLWLNE*******
MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSED**KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPV****
MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAP*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q9VQX4555 Nicotinate phosphoribosyl no no 0.984 0.349 0.596 4e-67
Q95XX1562 Nicotinate phosphoribosyl yes no 0.989 0.346 0.540 2e-58
Q55G10589 Nicotinate phosphoribosyl yes no 0.989 0.331 0.504 5e-57
Q6XQN6538 Nicotinate phosphoribosyl yes no 0.944 0.345 0.366 2e-28
Q8CC86538 Nicotinate phosphoribosyl yes no 0.918 0.336 0.375 2e-26
Q6P3H4546 Nicotinate phosphoribosyl yes no 0.908 0.327 0.346 3e-26
Q6XQN1538 Nicotinate phosphoribosyl yes no 0.913 0.334 0.372 6e-26
A5PK51538 Nicotinate phosphoribosyl yes no 0.903 0.330 0.375 4e-24
O32090490 Nicotinate phosphoribosyl yes no 0.380 0.153 0.430 3e-11
O53770463 Nicotinate phosphoribosyl yes no 0.751 0.319 0.278 0.0002
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2 Back     alignment and function desciption
 Score =  254 bits (648), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 150/196 (76%), Gaps = 2/196 (1%)

Query: 1   MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 60
           ++I ASND+NE+T+ +LN+QGH++D FGIGT+LVTC  Q ALGCV+KLVEIN QPRIKLS
Sbjct: 361 LTIVASNDINEDTILSLNEQGHKIDCFGIGTHLVTCQRQPALGCVYKLVEINGQPRIKLS 420

Query: 61  EDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQ 120
           +DV KV++P  K +YRLY  +G+ L+D++   +EPPP VG+++LCRHPF ESKRAYV+P 
Sbjct: 421 QDVEKVTMPGNKNAYRLYSADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYVIPS 480

Query: 121 KVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLY 180
            VE L K YW   S K  + LPTL+  RE+    L+ +R DH R LNPTPYKV+VS  LY
Sbjct: 481 HVESLYKVYW--KSGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYKVAVSDNLY 538

Query: 181 DFIHFLWLNEAPVGEL 196
           +FIH LWL  AP+GEL
Sbjct: 539 NFIHDLWLQNAPIGEL 554
Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3 Back     alignment and function description
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1 Back     alignment and function description
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2 Back     alignment and function description
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2 Back     alignment and function description
>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1 Back     alignment and function description
>sp|O53770|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium tuberculosis GN=pncB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
224081698 559 predicted protein [Populus trichocarpa] 1.0 0.352 0.949 1e-108
224094304 559 predicted protein [Populus trichocarpa] 1.0 0.352 0.934 1e-107
255565240 561 nicotinate phosphoribosyltransferase, pu 0.994 0.349 0.943 1e-106
297821601 563 nicotinate phosphoribosyltransferase fam 1.0 0.349 0.908 1e-105
30682074 557 nicotinate phosphoribosyltransferase [Ar 1.0 0.353 0.908 1e-104
3242705 574 unknown protein [Arabidopsis thaliana] 1.0 0.343 0.908 1e-104
356511877 557 PREDICTED: nicotinate phosphoribosyltran 1.0 0.353 0.903 1e-103
296082406 524 unnamed protein product [Vitis vinifera] 1.0 0.375 0.908 1e-103
343172726 559 nicotinate phosphoribosyltransferase, pa 1.0 0.352 0.898 1e-103
225438748 561 PREDICTED: nicotinate phosphoribosyltran 1.0 0.351 0.908 1e-103
>gi|224081698|ref|XP_002306477.1| predicted protein [Populus trichocarpa] gi|222855926|gb|EEE93473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/197 (94%), Positives = 191/197 (96%)

Query: 1   MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 60
           MSITASNDLNEETLDALNKQGHEVDA+GIGTYLVTCYAQAALGCVFKLVEIN QPRIKLS
Sbjct: 363 MSITASNDLNEETLDALNKQGHEVDAYGIGTYLVTCYAQAALGCVFKLVEINNQPRIKLS 422

Query: 61  EDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQ 120
           EDVSKVSIPCKKRSYRLYG+EGYPLVDIMTGENEP PKVGERILCRHPFNESKRAYVVPQ
Sbjct: 423 EDVSKVSIPCKKRSYRLYGREGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQ 482

Query: 121 KVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLY 180
           +VEELLKCYWPGSSDK REDLP LKD R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLY
Sbjct: 483 QVEELLKCYWPGSSDKPREDLPPLKDIRDRCIKQLEIMRPDHMRRLNPTPYKVSVSAKLY 542

Query: 181 DFIHFLWLNEAPVGELQ 197
           DFIHFLWLNEAPVGELQ
Sbjct: 543 DFIHFLWLNEAPVGELQ 559

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224094304|ref|XP_002310133.1| predicted protein [Populus trichocarpa] gi|222853036|gb|EEE90583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565240|ref|XP_002523612.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] gi|223537174|gb|EEF38807.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297821601|ref|XP_002878683.1| nicotinate phosphoribosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324522|gb|EFH54942.1| nicotinate phosphoribosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30682074|ref|NP_179923.2| nicotinate phosphoribosyltransferase [Arabidopsis thaliana] gi|25054896|gb|AAN71931.1| unknown protein [Arabidopsis thaliana] gi|330252359|gb|AEC07453.1| nicotinate phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3242705|gb|AAC23757.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511877|ref|XP_003524648.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|296082406|emb|CBI21411.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|343172726|gb|AEL99066.1| nicotinate phosphoribosyltransferase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|225438748|ref|XP_002282786.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2046872557 NAPRT2 "nicotinate phosphoribo 1.0 0.353 0.908 1.5e-97
TAIR|locus:2115095559 NAPRT1 "nicotinate phosphoribo 0.994 0.350 0.887 1.1e-94
FB|FBgn0031589555 CG3714 [Drosophila melanogaste 0.984 0.349 0.596 3e-62
WB|WBGene00021882562 Y54G2A.17 [Caenorhabditis eleg 0.989 0.346 0.540 2.3e-55
UNIPROTKB|Q95XX1562 Y54G2A.17 "Nicotinate phosphor 0.989 0.346 0.540 2.3e-55
DICTYBASE|DDB_G0268472589 naprt "nicotinate phosphoribos 0.984 0.329 0.507 8e-53
UNIPROTKB|F1NA80383 NAPRT1 "Uncharacterized protei 0.893 0.459 0.370 4.4e-29
UNIPROTKB|F1NY99539 NAPRT1 "Uncharacterized protei 0.893 0.326 0.370 1.3e-28
UNIPROTKB|Q6XQN6538 NAPRT1 "Nicotinate phosphoribo 0.944 0.345 0.366 4.7e-27
MGI|MGI:2442664538 Naprt1 "nicotinate phosphoribo 0.883 0.323 0.384 4.7e-27
TAIR|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 179/197 (90%), Positives = 189/197 (95%)

Query:     1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 60
             M +TASNDLNEET+DALNKQGHEVDAFGIGTYLVTCY+QAALGCVFKLVEIN QPRIKLS
Sbjct:   361 MVVTASNDLNEETIDALNKQGHEVDAFGIGTYLVTCYSQAALGCVFKLVEINNQPRIKLS 420

Query:    61 EDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQ 120
             EDV+KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGER+LCRHPFNESKRAYVVPQ
Sbjct:   421 EDVTKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQ 480

Query:   121 KVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLY 180
             +VEELLKCYW GS+D+ RE LP LK+ R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLY
Sbjct:   481 RVEELLKCYWRGSADEAREVLPPLKEIRDRCIKQLENMRPDHMRRLNPTPYKVSVSAKLY 540

Query:   181 DFIHFLWLNEAPVGELQ 197
             DFIHFLWLNEAPVGELQ
Sbjct:   541 DFIHFLWLNEAPVGELQ 557
GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0009435 "NAD biosynthetic process" evidence=IEA
GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TAIR|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA80 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY99 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6XQN6 NAPRT1 "Nicotinate phosphoribosyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442664 Naprt1 "nicotinate phosphoribosyltransferase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
PLN02885545 PLN02885, PLN02885, nicotinate phosphoribosyltrans 1e-161
PRK09243464 PRK09243, PRK09243, nicotinate phosphoribosyltrans 2e-46
TIGR01513443 TIGR01513, NAPRTase_put, putative nicotinate phosp 3e-40
cd01570327 cd01570, NAPRTase_A, Nicotinate phosphoribosyltran 2e-23
PRK12484443 PRK12484, PRK12484, nicotinate phosphoribosyltrans 4e-20
pfam04095245 pfam04095, NAPRTase, Nicotinate phosphoribosyltran 2e-17
COG1488405 COG1488, PncB, Nicotinic acid phosphoribosyltransf 2e-14
cd01567343 cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt 3e-11
cd00516281 cd00516, PRTase_typeII, Phosphoribosyltransferase 3e-07
PRK05321400 PRK05321, PRK05321, nicotinate phosphoribosyltrans 7e-04
cd01401377 cd01401, PncB_like, Nicotinate phosphoribosyltrans 0.003
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase Back     alignment and domain information 
 Score =  455 bits (1173), Expect = e-161
 Identities = 177/197 (89%), Positives = 189/197 (95%)

Query: 1   MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 60
           MSITASND+NEETLDALNKQGHE+DAFGIGT+LVTCYAQ ALGCV+KLVEIN QPRIKLS
Sbjct: 349 MSITASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLS 408

Query: 61  EDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQ 120
           EDV KV+IPCKKR YRLYGKEGYPLVD+MTGENEPPPKVGERILCRHPFNESKRAYVVPQ
Sbjct: 409 EDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQ 468

Query: 121 KVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLY 180
           +VEELLKCYW GSS K RE+LP+LK+ RERC+KQLE+MRPDHMRRLNPTPYKVSVSAKLY
Sbjct: 469 RVEELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVSAKLY 528

Query: 181 DFIHFLWLNEAPVGELQ 197
           DFIHFLWLNEAPVGELQ
Sbjct: 529 DFIHFLWLNEAPVGELQ 545

Length = 545
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
PLN02885545 nicotinate phosphoribosyltransferase 100.0
PRK09243464 nicotinate phosphoribosyltransferase; Validated 100.0
TIGR01513443 NAPRTase_put putative nicotinate phosphoribosyltra 100.0
PRK12484443 nicotinate phosphoribosyltransferase; Provisional 100.0
PRK09198463 putative nicotinate phosphoribosyltransferase; Pro 99.88
COG1488405 PncB Nicotinic acid phosphoribosyltransferase [Coe 99.87
PHA02594470 nadV nicotinamide phosphoribosyl transferase; Prov 99.85
cd01401377 PncB_like Nicotinate phosphoribosyltransferase (NA 99.84
PRK05321400 nicotinate phosphoribosyltransferase; Provisional 99.83
KOG2511420 consensus Nicotinic acid phosphoribosyltransferase 99.83
TIGR01514394 NAPRTase nicotinate phosphoribosyltransferase. Thi 99.82
PF04095245 NAPRTase: Nicotinate phosphoribosyltransferase (NA 99.7
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 99.51
cd01569407 PBEF_like pre-B-cell colony-enhancing factor (PBEF 99.26
PRK08662343 nicotinate phosphoribosyltransferase; Reviewed 99.25
cd01571302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 90.66
>PLN02885 nicotinate phosphoribosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-56  Score=420.53  Aligned_cols=197  Identities=90%  Similarity=1.458  Sum_probs=185.7

Q ss_pred             CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcCcceeeccCCCCccCCCCceeEEEeecC
Q 029209            1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK   80 (197)
Q Consensus         1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~KqVyR~~d~   80 (197)
                      +||+|||||||++|.+|.++|++||+|||||+|+||.++|+||||||||+++|+|++|+|++++|.|+||+|||||+||+
T Consensus       349 ~kIv~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~  428 (545)
T PLN02885        349 MSITASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGK  428 (545)
T ss_pred             eEEEEeCCCCHHHHHHHHHcCCCccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHHHhcCCh
Q 029209           81 EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRP  160 (197)
Q Consensus        81 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~l~~L~~  160 (197)
                      +|++.+|+|++.+|+++..++++.|+||.++|++..+.++++++||+++|++|+...++++|+|++||+|+++||++|||
T Consensus       429 ~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~  508 (545)
T PLN02885        429 EGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRP  508 (545)
T ss_pred             CCCEEEEEEecCCCCCCCCCCceEEeCCccchheeeeccccHHhhhHHHeECCCCcCcCCCCCHHHHHHHHHHHHhhCCH
Confidence            89999999999999766678899999999999999999999999999999994432236899999999999999999999


Q ss_pred             hhhhccCCcccccccCHHHHHHHHHHHHccCCCCCCC
Q 029209          161 DHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ  197 (197)
Q Consensus       161 ~~~rl~~P~~Y~V~lS~~L~~l~~~L~~~~~~~~~~~  197 (197)
                      +++|+.||++|+|++|++|++++++||.++++++|++
T Consensus       509 ~~~r~~~p~~y~V~~s~~l~~~~~~l~~~~~~~~~~~  545 (545)
T PLN02885        509 DHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ  545 (545)
T ss_pred             HHHhccCCccceeccCHHHHHHHHHHHHhcCccccCC
Confidence            9999999999999999999999999999988877753

>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>PRK12484 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional Back     alignment and domain information
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information
>PRK05321 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase Back     alignment and domain information
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2 Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
2f7f_A494 Crystal Structure Of Enterococcus Faecalis Putative 5e-19
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 3   ITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRI 57
           I ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +       I
Sbjct: 289 IYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTI 348
Query: 58  KLSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNES 112
           KLS +  KV+ P KK+ +R+  K     EG    D +T  NE  P+  E I   HP +  
Sbjct: 349 KLSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTF 403
Query: 113 KRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYK 172
              YV   +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y 
Sbjct: 404 INKYVRDFEARPVLQDIFV--EGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYP 461
Query: 173 VSVSAKLYD 181
           V +S   ++
Sbjct: 462 VDLSTDCWN 470

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 8e-75
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 2e-42
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 1e-33
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 5e-23
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 4e-22
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 3e-21
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 1e-20
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 1e-17
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 6e-14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494 Back     alignment and structure
 Score =  232 bits (593), Expect = 8e-75
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 1   MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-----KQP 55
             I ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I       + 
Sbjct: 287 AKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKD 346

Query: 56  RIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRA 115
            IKLS +  KV+ P KK+ +R+  K                P+  E I   HP +     
Sbjct: 347 TIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINK 406

Query: 116 YVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSV 175
           YV   +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +
Sbjct: 407 YVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDL 464

Query: 176 SAKLYDFIHFLWL 188
           S   ++    L  
Sbjct: 465 STDCWNHKMNLLE 477
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398 Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407 Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441 Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408 Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394 Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 100.0
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 99.95
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 99.95
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 99.94
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 99.86
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 99.86
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 99.85
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 99.8
4hl7_A446 Naprtase, nicotinate phosphoribosyltransferase; st 99.79
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 99.79
2jbm_A299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 86.39
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 85.26
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
Probab=100.00  E-value=1.9e-47  Score=355.73  Aligned_cols=186  Identities=34%  Similarity=0.472  Sum_probs=176.7

Q ss_pred             CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEE---cCc--ceeeccCCCCccCCCCceeEE
Q 029209            1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI---NKQ--PRIKLSEDVSKVSIPCKKRSY   75 (197)
Q Consensus         1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~---~g~--p~~K~S~~~~K~t~PG~KqVy   75 (197)
                      ++|+||||||++.|.+|.++|+++|+|||||+|+++.++|++|+|||||++   ||+  |++|+|++++|.|+||+|+||
T Consensus       287 ~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~~~~~~~ld~v~Klv~~~~~~G~~~pv~K~s~~~~K~s~pG~k~v~  366 (494)
T 2f7f_A          287 AKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVW  366 (494)
T ss_dssp             CEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHcCCCEEEEecCcccccCCCCCcccEEEEEEEEEcCCCcCccccccCCCCCCcCCCCceEEE
Confidence            589999999999999999999999999999999999999999999999999   998  999999999999999999999


Q ss_pred             Eeec-CCCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHH
Q 029209           76 RLYG-KEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ  154 (197)
Q Consensus        76 R~~d-~~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~  154 (197)
                      |+|+ .+|++.+|+|++.+|+++ .++++.|+||.++|++.+++++.+++||+++|++|+++  .+.|++++||+|++++
T Consensus       367 R~~~~~~g~~~~d~i~~~~e~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~v~~~G~~~--~~~~~l~eir~~~~~~  443 (494)
T 2f7f_A          367 RITRKSDKKSEGDYVTLWNEDPR-QEEEIYMFHPVHTFINKYVRDFEARPVLQDIFVEGKRV--YELPTLDEIKQYAKEN  443 (494)
T ss_dssp             EEEETTTCCEEEEEEEETTCCGG-GCSEEEEECSSSTTSEEEEESEEEEECCEEEEETTEEC--CCCCCHHHHHHHHHHH
T ss_pred             EEeecCCCeEEEEEEEecCCCCc-cccceeeeCcchhhhhccccCccchhhhhhhhcCCEEc--CCCCCHHHHHHHHHHH
Confidence            9998 579999999999998633 46678999999999999999999999999999999987  5789999999999999


Q ss_pred             HhcCChhhhhccCCcccccccCHHHHHHHHHHHHc
Q 029209          155 LEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLN  189 (197)
Q Consensus       155 l~~L~~~~~rl~~P~~Y~V~lS~~L~~l~~~L~~~  189 (197)
                      |++||++++|+.|||+|+|++|++|++++++|+.+
T Consensus       444 l~~l~~~~~r~~~p~~y~v~~s~~l~~~~~~~~~~  478 (494)
T 2f7f_A          444 LDSLHEEYKRDLNPQKYPVDLSTDCWNHKMNLLEK  478 (494)
T ss_dssp             HHHSCHHHHCSSSCCCCCEEECHHHHHHHHHHHHH
T ss_pred             HHhCCHHHhcccCCcCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999974
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Back     alignment and structure
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae} Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d2f7fa1345 c.1.17.1 (A:141-485) Putative nicotinate phosphori 3e-60
d1ytda1270 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltran 1e-27
d2i14a1279 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho 3e-23
d1yira1255 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltran 3e-20
d1ybea1266 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltran 3e-20
d1vlpa2266 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltran 4e-18
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score =  189 bits (481), Expect = 3e-60
 Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 7/189 (3%)

Query: 1   MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----P 55
             I ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +      
Sbjct: 147 AKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKD 206

Query: 56  RIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRA 115
            IKLS +  KV+ P KK+ +R+  K                P+  E I   HP +     
Sbjct: 207 TIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINK 266

Query: 116 YVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSV 175
           YV   +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +
Sbjct: 267 YVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDL 324

Query: 176 SAKLYDFIH 184
           S   ++   
Sbjct: 325 STDCWNHKM 333
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270 Back     information, alignment and structure
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279 Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 255 Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 266 Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d2f7fa1345 Putative nicotinate phosphoribosyltransferase EF26 100.0
d1ytda1270 Nicotinate phosphoribosyltransferase Ta1145 {Therm 99.97
d2i14a1279 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 99.97
d1ybea1266 Nicotinate phosphoribosyltransferase, C-terminal d 99.87
d1yira1255 Nicotinate phosphoribosyltransferase, C-terminal d 99.85
d1vlpa2266 Nicotinate phosphoribosyltransferase, C-terminal d 99.83
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=2.4e-51  Score=365.29  Aligned_cols=186  Identities=34%  Similarity=0.480  Sum_probs=176.4

Q ss_pred             CEEEEeCCCCHHHHHHHHhCCCcccEEeecCcccccCCCCccceEEEEEEEcC-----cceeeccCCCCccCCCCceeEE
Q 029209            1 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINK-----QPRIKLSEDVSKVSIPCKKRSY   75 (197)
Q Consensus         1 vkI~~S~~Lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g-----~p~~K~S~~~~K~t~PG~KqVy   75 (197)
                      ++|++||||||++|.+|.++|++||+|||||+|+|+.+.|++|||||||+++|     .|++|+|++++|.|+||+|+||
T Consensus       147 v~Ii~Sdglde~~I~~l~~~~~~id~FGvGt~L~~~~~~p~l~~v~Klv~i~g~~g~~~p~~K~s~~~~K~t~pG~K~v~  226 (345)
T d2f7fa1         147 AKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVW  226 (345)
T ss_dssp             CEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEE
T ss_pred             eEEEEeCCCCHHHHHHHHHcCCceeEeecCcceeecCCCCcccchhcceeecCCCCceeeeeeecCCCCCcCCCCCeeEE
Confidence            68999999999999999999999999999999999999999999999999987     4999999999999999999999


Q ss_pred             EeecC-CCceeEEEEecCCCCCCCCCcceeecCCCCccceeeecCCccccceeehccCCccccCCCCCCHHHHHHHHHHH
Q 029209           76 RLYGK-EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ  154 (197)
Q Consensus        76 R~~d~-~g~~~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~LL~~v~~~G~~~~~~~~psl~eiR~~~~~~  154 (197)
                      |+|+. +|.+..|+|++.+|. +..+..+.++||.++++++.++++..++||++||++|+++  ..+||+++||+|+++|
T Consensus       227 R~~~~~~~~~~~D~i~l~~e~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~Gk~v--~~~~sl~eiR~r~~~~  303 (345)
T d2f7fa1         227 RITRKSDKKSEGDYVTLWNED-PRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIFVEGKRV--YELPTLDEIKQYAKEN  303 (345)
T ss_dssp             EEEETTTCCEEEEEEEETTCC-GGGCSEEEEECSSSTTSEEEEESEEEEECCEEEEETTEEC--CCCCCHHHHHHHHHHH
T ss_pred             EEecCCCCeeEeEEEeecCCC-CCcCcceeeecCccchhheeccCcchhhhhhHHhcCCEEe--CCCCCHHHHHHHHHHH
Confidence            99985 478999999999995 4467788999999999999999999999999999999987  4689999999999999


Q ss_pred             HhcCChhhhhccCCcccccccCHHHHHHHHHHHHc
Q 029209          155 LEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLN  189 (197)
Q Consensus       155 l~~L~~~~~rl~~P~~Y~V~lS~~L~~l~~~L~~~  189 (197)
                      |++||++++|+.|||+|+|++|++|++++++|+++
T Consensus       304 l~~l~~~~~rl~nP~~Y~V~ls~~L~~~~~~l~~~  338 (345)
T d2f7fa1         304 LDSLHEEYKRDLNPQKYPVDLSTDCWNHKMNLLEK  338 (345)
T ss_dssp             HHHSCHHHHCSSSCCCCCEEECHHHHHHHHHHHHH
T ss_pred             HHhCCHHHhcccCCcCCeeccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999974
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure