Citrus Sinensis ID: 029251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MWELICLTLAATAgnnigkvlqkkgtvilpplsfKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Flexible Loop (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Low Complexity Region (SEG)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGYYFLLDKIYAKVFF
Disordered region (IsUnstruct)
*WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVF*
Disordered Region (DISOPRED)
MWELICLTLAATAGNNIGKVLQKKG****************YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE*SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Disordered Region (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Disordered Region (DISPRO)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKVFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
P55580	117	Uncharacterized protein y	yes	no	0.566	0.948	0.318	0.0004

>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234) GN=NGR_a02340 PE=4 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
           I L  AA   + IG +L K G   LPP +          +   +V G +      LL  +
Sbjct: 6   IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61

Query: 65  ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
           AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  GG
Sbjct: 62  ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
255550079	344	conserved hypothetical protein [Ricinus	0.969	0.552	0.842	3e-90
449447136	344	PREDICTED: uncharacterized protein LOC10	0.969	0.552	0.826	9e-87
224114565	359	predicted protein [Populus trichocarpa]	0.969	0.529	0.768	1e-85
356552374	343	PREDICTED: uncharacterized protein LOC10	0.969	0.553	0.810	3e-85
357437377	343	hypothetical protein MTR_1g015820 [Medic	0.969	0.553	0.827	4e-85
356564039	343	PREDICTED: uncharacterized protein LOC10	0.969	0.553	0.805	1e-84
297811313	344	hypothetical protein ARALYDRAFT_909170 [	0.969	0.552	0.821	1e-83
22326741	344	uncharacterized protein [Arabidopsis tha	0.969	0.552	0.810	1e-82
356507006	344	PREDICTED: uncharacterized protein LOC10	0.969	0.552	0.815	8e-80
356514649	338	PREDICTED: uncharacterized protein LOC10	0.969	0.562	0.805	9e-79

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/190 (84%), Positives = 178/190 (93%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK+WVIGFLMDI GA+
Sbjct: 1   MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAM 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTIGVGAGGE
Sbjct: 61  LMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIYGLESGIL
Sbjct: 121 EQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVISKM 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  325 bits (832), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 173/190 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGK+LQKKGTVILPPLSFKLKVIRAYA NK W+IGFLMDIFGA+
Sbjct: 1   MWEPICLTLAAAAGNNIGKILQKKGTVILPPLSFKLKVIRAYAFNKTWIIGFLMDIFGAV 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIYGLESGIL
Sbjct: 121 EQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVISKM 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 159/207 (76%), Positives = 178/207 (85%), Gaps = 17/207 (8%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-----------------VIRAYA 43
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLSFKLK                 VIRAYA
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKACIFYPLSFSFFSLPPLVIRAYA 60

Query: 44  VNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM 103
            NKAW+IGFL+DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+
Sbjct: 61  ANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWI 120

Query: 104 GITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMI 163
           GITLAGIGTIGVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+
Sbjct: 121 GITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMM 180

Query: 164 EFEVVEEIIYGLESGILFGYYFLLDKI 190
           ++EVVEEIIYGLESGILFG   ++ K+
Sbjct: 181 DYEVVEEIIYGLESGILFGMASVISKM 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 174/190 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE + LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFLMDI GAL
Sbjct: 1   MWESVVLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLMDILGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IYGLESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMSSVISKM 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437377|ref|XP_003588964.1| hypothetical protein MTR_1g015820 [Medicago truncatula] gi|355478012|gb|AES59215.1| hypothetical protein MTR_1g015820 [Medicago truncatula]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/191 (82%), Positives = 174/191 (91%), Gaps = 1/191 (0%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIRAYA+NK W IGFLMDIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRAYALNKTWSIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYL+EVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLQEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 E-QEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGI 179
           E QE  ++SIF +PWLAFVVSILF+LLNGWLRI K QRREQEM+E++VVEEIIYGLESGI
Sbjct: 121 EQQEMVALSIFHIPWLAFVVSILFILLNGWLRIYKRQRREQEMMEYDVVEEIIYGLESGI 180

Query: 180 LFGYYFLLDKI 190
           LFG   ++ K+
Sbjct: 181 LFGMSSVISKM 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 174/190 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFL+DIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IYG ESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMSSVISKM 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811313|ref|XP_002873540.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata] gi|297319377|gb|EFH49799.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 169/190 (88%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKVIRAYAVNK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVIRAYAVNKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVVSKM 190

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 168/190 (88%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVVSKM 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 173/190 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK WVIGFLMDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVISKM 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514649|ref|XP_003526017.1| PREDICTED: uncharacterized protein LOC100788141 [Glycine max]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 173/190 (91%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK W+IGF+MDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWLIGFVMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGYYFLLDKI 190
           FG   ++ K+
Sbjct: 181 FGMASVISKM 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	0.969	0.552	0.673	7.9e-62

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 128/190 (67%), Positives = 139/190 (73%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGYYFLLDKI 190
             FG   ++ K+
Sbjct:   181 FGMASVVSKM 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      196       166   0.00097  107 3  11 21  0.41    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.62u 0.09s 12.71t   Elapsed:  00:00:00
  Total cpu time:  12.62u 0.09s 12.71t   Elapsed:  00:00:00
  Start:  Fri May 10 12:09:39 2013   End:  Fri May 10 12:09:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_207000001 hypothetical protein (359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.002
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	0.004

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 58  GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 48  WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL 107
           W  G L  I G      A + AP +++ P+    + I ++ S F+L E +N    +G  L
Sbjct: 53  WWAGLLTMIVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVL 112

Query: 108 AGIG-TIGVGAGGEEQEPSSISIFQ--LPWLAFVVSILFVLLNGWLRICKHQRR 158
             +G T+ V    +EQE  S+           F+V ++ V+    + I   + R
Sbjct: 113 CIVGSTVIVIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPR 166

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.85
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.64
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.44
KOG2922	335	consensus Uncharacterized conserved protein [Funct	99.41
COG2510	140	Predicted membrane protein [Function unknown]	99.24
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	99.16
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	99.11
PRK09541	110	emrE multidrug efflux protein; Reviewed	99.05
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.03
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.03
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	98.9
COG2076	106	EmrE Membrane transporters of cations and cationic	98.85
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.82
PRK11431	105	multidrug efflux system protein; Provisional	98.8
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.63
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.59
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.58
PRK11689	295	aromatic amino acid exporter; Provisional	98.57
PRK15430	296	putative chloramphenical resistance permease RarD;	98.54
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.48
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.45
PRK11272	292	putative DMT superfamily transporter inner membran	98.42
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.42
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.42
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.41
PLN00411	358	nodulin MtN21 family protein; Provisional	98.38
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.32
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.3
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.28
PRK11689	295	aromatic amino acid exporter; Provisional	98.2
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.07
PRK11272	292	putative DMT superfamily transporter inner membran	98.06
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.02
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.0
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.99
PRK15430	296	putative chloramphenical resistance permease RarD;	97.92
PLN00411	358	nodulin MtN21 family protein; Provisional	97.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.75
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.71
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.68
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.37
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.29
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.29
KOG4831	125	consensus Unnamed protein [Function unknown]	97.18
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.04
KOG2765	416	consensus Predicted membrane protein [Function unk	96.78
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.76
PRK13499	345	rhamnose-proton symporter; Provisional	96.73
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.71
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.59
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.58
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	96.19
COG2962	293	RarD Predicted permeases [General function predict	95.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.23
PRK02237	109	hypothetical protein; Provisional	95.12
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.89
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	94.8
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	92.27
COG1742	109	Uncharacterized conserved protein [Function unknow	91.45
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	89.96
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	89.87
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	89.21
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	89.19
KOG2765	416	consensus Predicted membrane protein [Function unk	89.17
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	88.11
COG2962	293	RarD Predicted permeases [General function predict	87.77
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	84.73
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	84.08
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	82.43

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.85  E-value=2.8e-21  Score=167.38  Aligned_cols=183  Identities=22%  Similarity=0.358  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhh
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC   80 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~-~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~   80 (196)
                      ++|+.++++++.++++|..+||+++.+.++.+.+. .....|+++|.||.|+.++++|.++++.|+.++|.+++||+.+.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~   85 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL   85 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence            57999999999999999999999998877633221 23468999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc-CCCCCCCCcch-h---hh-HHHHHHHHHHHH-HHHHHHHHHh
Q 029251           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA-GGEEQEPSSIS-I---FQ-LPWLAFVVSILF-VLLNGWLRIC  153 (196)
Q Consensus        81 ~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~-~~~~~~~~~~~-~---~~-~~~~~~~~~~~~-~~~~~~~~~~  153 (196)
                      +++++++++.+++|||+++++|.|+.+++.|..++.. ++++++..+.+ .   +. ...........+ .+...+ ...
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~-~~~  164 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIF-FIK  164 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHH-hhc
Confidence            9999999999999999999999999999999886542 33332222221 1   11 111111111111 111111 112


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029251          154 KHQRREQEMIEFEVVEEIIYGLESGILFGYYFLLDKIYAKV  194 (196)
Q Consensus       154 ~~~r~~~~~~~~~~~~a~~~G~aaG~~fg~~av~~k~~~~~  194 (196)
                      +|.+++         +-..|...+++..+++.+++|.++..
T Consensus       165 ~r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~  196 (300)
T PF05653_consen  165 PRYGRR---------NILVYISICSLIGSFTVLSAKAISIL  196 (300)
T ss_pred             chhccc---------ceEEEEEEeccccchhhhHHHHHHHH
Confidence            111111         13557778889999999999988753

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.64  E-value=8.5e-15  Score=112.44  Aligned_cols=117  Identities=18%  Similarity=0.159  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHhccCchhHHHhhhh
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKV--IRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSG   79 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~--~~~~l~~~--~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~   79 (196)
                      ++++.+.+..+.+.||.+.|+++++.++.+.+...  ....+.||  ..+.|..++++++.+|..++++.|+|+++|+.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s   82 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS   82 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            56778889999999999999999988765432221  22234566  678999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251           80 CGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGGE  120 (196)
Q Consensus        80 ~~~v~~~~~~~~--~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~  120 (196)
                      ..++++.+.+..  ++||++|.++|+|+.++++|+++++.+++
T Consensus        83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            999999888885  89999999999999999999999986544

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=99.44  E-value=4.8e-12  Score=94.72  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHH
Q 029251            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAIL   85 (196)
Q Consensus         6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~   85 (196)
                      ..-+.+..+...||...|++++..++-..+.+    .+  .+...+..++++++.++..++++.|++++||+.+++++.+
T Consensus         4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~~~~~~----~l--~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~   77 (111)
T PRK15051          4 LTLVFASLLSVAGQLCQKQATRPVAIGKRRKH----IV--LWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV   77 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcchhhhH----HH--HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence            44567788889999999998766532110100    00  0113445789999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           86 SIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        86 ~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      .+++.+++||++|.++|+|+.+++.|+++++.
T Consensus        78 ~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         78 TLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998874

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.41  E-value=1.3e-14  Score=125.07  Aligned_cols=114  Identities=23%  Similarity=0.348  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~   82 (196)
                      +..+++.++...+.+..+||++..+.++.+.. ...-..|++.|.||.|++.+++|..+++.|+.++|.+++.|+.++++
T Consensus        22 G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsv  101 (335)
T KOG2922|consen   22 GLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSV  101 (335)
T ss_pred             eeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHH
Confidence            45677888888889999999999876642210 01123577899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        83 v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      +++++++.++++|+++..+.+|+.++++|-.++..
T Consensus       102 i~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen  102 IISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence            99999999999999999999999999999776653

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.24  E-value=9e-11  Score=89.36  Aligned_cols=115  Identities=23%  Similarity=0.357  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCC-chhHHHHHH--------HHh---------hHH-H---HHHHHHHHHHHH
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIRA--------YAV---------NKA-W---VIGFLMDIFGAL   60 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~-~~~~~~~~~--------~l~---------~~~-w---~~G~~~~~~g~~   60 (196)
                      -.+..++.+|+..++....-|.+-++.++. ..-.+....        +..         +|+ |   ..+.+.-+++..
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            356789999999999999999998876542 111111100        000         111 2   234466788889


Q ss_pred             HHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        61 ~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      +++.|++.++.|.+.|+.+++++++.++|..++|||+|..+|+|+.++++|+++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999998764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=99.16  E-value=1.6e-09  Score=82.19  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHH
Q 029251            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI   84 (196)
Q Consensus         6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~   84 (196)
                      +.-+.|..+...++...|.+....+              ..+++....++++++.++..++++.|++++||+- +.+.+.
T Consensus         5 l~L~~Ai~~Ev~~t~~LK~s~g~~~--------------~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~   70 (120)
T PRK10452          5 ILLALAIATEITGTLSMKWASVSEG--------------NGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILF   70 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC--------------cHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            3445667778888888887753221              1235678889999999999999999999999995 799999


Q ss_pred             HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        85 ~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      +.+.+.+++||++|..+++|+.+++.|++.+...+
T Consensus        71 ~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         71 ITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999886443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=99.11  E-value=3.2e-10  Score=85.02  Aligned_cols=102  Identities=21%  Similarity=0.336  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcccCCCCchh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHH
Q 029251           13 AGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIF   88 (196)
Q Consensus        13 ~~~~~g~~lqk~~~~~~~~~~~~---~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~   88 (196)
                      .+-+..+-+-||++...++...+   ......+++||.++.++.++-.|.+.++..|+..|+|++.|+. ++++++|++.
T Consensus         6 ~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~   85 (113)
T PF10639_consen    6 ILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALT   85 (113)
T ss_pred             HHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHH
Confidence            34455677888888766543322   3445568889999999999999999999999999999999997 9999999999


Q ss_pred             HHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251           89 SHFYLKEVMNAVDWMGITLAGIGTIG  114 (196)
Q Consensus        89 ~~~~l~e~l~~~~~~Gi~li~~Gv~~  114 (196)
                      +.++.+|..+++.|+|+.+++.|+.+
T Consensus        86 g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   86 GWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCcccchhHHHHHHHHHcCeee
Confidence            98888888899999999999999865

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=99.05  E-value=1.1e-08  Score=76.43  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHHH
Q 029251            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAI   84 (196)
Q Consensus         6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v~   84 (196)
                      ..-+.+..+...++...|.+..-. +             ..+.+....++++++.++..++++.|++++||+ ...+.+.
T Consensus         5 l~L~~a~~~Ev~~~~~lK~s~gf~-~-------------~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~   70 (110)
T PRK09541          5 IYLGGAILAEVIGTTLMKFSEGFT-R-------------LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL   70 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-c-------------hhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            344566778888888888774221 1             123467788999999999999999999999999 5699999


Q ss_pred             HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        85 ~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      +.+.+.+++||++|..+++|+.+++.|++.+...+
T Consensus        71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999986443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.03  E-value=1.2e-08  Score=87.03  Aligned_cols=115  Identities=17%  Similarity=0.284  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCch--h-------HHHHHHH-----Hh--hHH-H---HHHHHHHHHHHHHHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K-------LKVIRAY-----AV--NKA-W---VIGFLMDIFGALLML   63 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~--~-------~~~~~~~-----l~--~~~-w---~~G~~~~~~g~~~~~   63 (196)
                      ++.+.+.++++++..+.+.|+..++.+....  .       .+.....     .+  ++. |   ..+.........++.
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999977766443211  0       0111000     11  111 1   234445667778899


Q ss_pred             HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      .++++.|.+.++|+..++++++.+++.+++||++++++|+|+.++..|+.++..+
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999988653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.03  E-value=3.2e-09  Score=79.04  Aligned_cols=71  Identities=25%  Similarity=0.360  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCC
Q 029251           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE  121 (196)
Q Consensus        50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~  121 (196)
                      .|.+....++.+++.++++.| +.+.++..++++++.+++.+++|||+++++|.|+.++.+|++++..++.+
T Consensus        40 ~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   40 AGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            355555688999999999999 69999999999999999999999999999999999999999999876544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=98.90  E-value=1.7e-08  Score=73.09  Aligned_cols=88  Identities=20%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHH
Q 029251            7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAIL   85 (196)
Q Consensus         7 lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~   85 (196)
                      .-+.|..+...++...|+......              ..++.....++.+++.++..++++.|++++||+. +.+.+.+
T Consensus         5 ~L~~a~~~ev~~~~~lK~s~g~~~--------------~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~   70 (93)
T PF00893_consen    5 FLLLAILFEVVGTIALKASHGFTQ--------------LIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV   70 (93)
T ss_dssp             HHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc--------------hhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            334566678889998888432111              1233455668999999999999999999999996 5999999


Q ss_pred             HHHHHHHhCCcCchHHHHHHHHH
Q 029251           86 SIFSHFYLKEVMNAVDWMGITLA  108 (196)
Q Consensus        86 ~~~~~~~l~e~l~~~~~~Gi~li  108 (196)
                      .+.+.+++||++|..+|.|+.++
T Consensus        71 ~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   71 TLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHhheeeC
Confidence            99999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.2e-07  Score=70.21  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHH
Q 029251            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA   83 (196)
Q Consensus         5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v   83 (196)
                      ...-++|..+.-+++...|.+..-.+              ..+.+...+++.+++.+.-.+++..|++++|++ ...+.+
T Consensus         4 w~~L~lAi~~EV~~~~~lK~s~gf~~--------------~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v   69 (106)
T COG2076           4 WIYLLLAILLEVVGTTLLKYSDGFTR--------------LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIV   69 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            34455667777788888888753221              123456778899999999999999999999999 579999


Q ss_pred             HHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        84 ~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      .+++.+.+++||+++..+++|+.+++.|++.+-.
T Consensus        70 ~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          70 GTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999998753

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.82  E-value=2.2e-07  Score=69.41  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hh
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GC   80 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~-w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~   80 (196)
                      +....-++|..+...++...|++..-               ++|. ...-..++.+++.+.-.+++..|++++|++- ..
T Consensus         7 ~~~~~L~~Ai~~Ev~~t~~Lk~s~gf---------------~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~Gi   71 (109)
T PRK10650          7 IHAAWLALAIVLEIVANIFLKFSDGF---------------RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGF   71 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence            44555567788888888888876421               1122 2455677888999999999999999999995 69


Q ss_pred             HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (196)
Q Consensus        81 ~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l  115 (196)
                      +.+.+.+.+.+++||++|..+++|+.+++.|++.+
T Consensus        72 G~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         72 GIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=98.80  E-value=2.2e-07  Score=68.99  Aligned_cols=95  Identities=20%  Similarity=0.120  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHH
Q 029251            8 TLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (196)
Q Consensus         8 al~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~   86 (196)
                      -+.|..+...++...|++..-.              +..++.....++.+++.+.-.+++..|++++|++- ..+.+.+.
T Consensus         6 L~~Ai~~Ev~~t~~Lk~s~gf~--------------~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~   71 (105)
T PRK11431          6 LVIAGLLEVVWAVGLKYTHGFS--------------RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAA   71 (105)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCc--------------cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence            3456777788888888753211              11234566788999999999999999999999995 59999999


Q ss_pred             HHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           87 IFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        87 ~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      +.+.+++||++|..+++|+.+++.|++.+.
T Consensus        72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         72 ITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999874

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.63  E-value=1.6e-06  Score=74.52  Aligned_cols=116  Identities=15%  Similarity=0.177  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH-HH-------HHHH------hhHH-----HHHHHHHHHHHHHHHH
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-VI-------RAYA------VNKA-----WVIGFLMDIFGALLML   63 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~-~~-------~~~l------~~~~-----w~~G~~~~~~g~~~~~   63 (196)
                      .+..+.+.++++++...+..|+..++.++...... ..       ....      .++.     ...|..+.++++.+|.
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999998887665443221000 00       0000      0111     3566777788889999


Q ss_pred             HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      .++++.|-+.+.++..++++++.+++.+++||+++..+++|..+++.|++.....
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999987643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.59  E-value=1.9e-06  Score=71.85  Aligned_cols=112  Identities=16%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--hh-HHH------H--HHHHh-------hHHH----HHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LKV------I--RAYAV-------NKAW----VIGFLMDIFGA   59 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~~-~~~------~--~~~l~-------~~~w----~~G~~~~~~g~   59 (196)
                      +.++.+++.++++.+..+..+|+..++.+...  .. ...      .  .....       ...|    ..|.....+++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999887655221  10 000      0  00111       1112    24555667889


Q ss_pred             HHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (196)
Q Consensus        60 ~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~  113 (196)
                      .++..++++.|.+.+..+..++++++.+++.+++||++++.+|.|+.++..|+.
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999863

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.58  E-value=1.1e-06  Score=73.25  Aligned_cols=71  Identities=17%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      ..|.....+...+++.++++.|.+.+.++..+.++++++++.+++|||+++++|+|+.+..+|+.++..++
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~  121 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG  121 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence            46666778888999999999999999999999999999999999999999999999999999999887443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.57  E-value=2.3e-06  Score=73.59  Aligned_cols=113  Identities=9%  Similarity=0.018  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-----HHHHHH-HHh-------hHH-H----HHHHHHHHHHHHHHHH
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFK-----LKVIRA-YAV-------NKA-W----VIGFLMDIFGALLMLR   64 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-----~~~~~~-~l~-------~~~-w----~~G~~~~~~g~~~~~~   64 (196)
                      .+..+.+.++.+.+..+++.||..++.++....     .-.... ...       ++. |    ..| ...++++.+|..
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            367889999999999999999987654432210     000000 000       111 2    222 245667889999


Q ss_pred             HhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        65 aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      ++++.|.+.+.++..++++++.+++.+++||+++..+++|..++..|+.+.-
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            9999999999999999999999999999999999999999999999988764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.54  E-value=6.6e-06  Score=70.77  Aligned_cols=115  Identities=14%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-------hHHHHH-------------HHHhhHHH----HHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------KLKVIR-------------AYAVNKAW----VIGFLMDIF   57 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-------~~~~~~-------------~~l~~~~w----~~G~~~~~~   57 (196)
                      ..++...+.++.+.+.....-|.. .+.++...       +.....             +..++++.    ..+......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG   85 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            357778888888888887777764 34443221       110000             00111222    255666777


Q ss_pred             HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      ...+++.++++.|.+.+.-+..+.++++.+++.+++|||+++++|.|+.+..+|+.++..
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999998763

>TIGR00688 rarD rarD protein

Probab=98.48  E-value=1.1e-05  Score=67.60  Aligned_cols=113  Identities=14%  Similarity=0.104  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCch-------hHHHHHH-------------HHh---hHH-H---HHHHHHHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-------KLKVIRA-------------YAV---NKA-W---VIGFLMDI   56 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-------~~~~~~~-------------~l~---~~~-w---~~G~~~~~   56 (196)
                      ++...+.++.+.+......|.. .+.++.+.       +......             ..+   +.. +   .....+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            5677888888888888888873 34543321       1101000             011   111 1   12233466


Q ss_pred             HHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        57 ~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      ....+++.++++.|.+.+.-+..+.++++++++.+++|||+++++|.|+.+...|++++..
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.45  E-value=2.7e-05  Score=67.03  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCch-hHHHH------HHHHh--hHHH--H--HHHHHHHHHHHHHHHHhcc-Cch
Q 029251            6 CLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVI------RAYAV--NKAW--V--IGFLMDIFGALLMLRALSQ-APV   71 (196)
Q Consensus         6 ~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~~~~~------~~~l~--~~~w--~--~G~~~~~~g~~~~~~aL~~-~pl   71 (196)
                      ...+.++++-+......|...++.++... ..++.      ..+.+  +.+|  .  .|.......+.+++.++++ .|.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a   86 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA   86 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            44667777777777888877766665432 11211      11111  1111  1  2332233344566778887 588


Q ss_pred             hHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           72 SVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        72 svv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      +.+.-+..+.++++.+++.+++|||+++++|+|+.+..+|+.++..+
T Consensus        87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            99999999999999999999999999999999999999999988743

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.42  E-value=6.5e-06  Score=70.58  Aligned_cols=116  Identities=11%  Similarity=0.124  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--h----hHHHH--HHHH------h--hH-HH----HHHHHHHHHHHHH
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS--F----KLKVI--RAYA------V--NK-AW----VIGFLMDIFGALL   61 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~----~~~~~--~~~l------~--~~-~w----~~G~~~~~~g~~~   61 (196)
                      .+..+++.++++++..+..+|+..++.+...  +    +....  ....      .  ++ .|    ..|....++++.+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999998654322110  0    00000  0000      0  11 12    2445556678889


Q ss_pred             HHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        62 ~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      |..++++.|.+.+..+..++++++++++.+++||++|..+++|..++..|+.++..+
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988653

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.42  E-value=7.5e-07  Score=65.35  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      ..|.+....+..++..++++.|.+.+.++..++++++.+++..++||+++.++|+|+.+++.|+.++.
T Consensus        58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35555568889999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.42  E-value=1e-05  Score=69.62  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc---hh--------HHHH-HHHHh-------------hHH-H----HHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS---FK--------LKVI-RAYAV-------------NKA-W----VIG   51 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~---~~--------~~~~-~~~l~-------------~~~-w----~~G   51 (196)
                      |.+..+++.++++.+...+++|+..++.++..   ..        .+.. .....             ++. |    ..|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            46889999999999999999998754433211   00        0111 00000             111 2    345


Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        52 ~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      ....++++.+|..++++.+-+.+.++..++++++.+++.+++||+++..+|+|..+++.|+.+...+
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            5566778889999999999999999999999999999999999999999999999999999876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.41  E-value=2.1e-05  Score=69.40  Aligned_cols=67  Identities=19%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        52 ~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      .++|..+--+.+.|+++-+++-+|-+...+.++++++|.+++|||.+..+++|+.+++.|+.++..+
T Consensus        86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            4578999999999999999999999999999999999999999999999999999999999987644

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.38  E-value=8.1e-06  Score=72.61  Aligned_cols=115  Identities=11%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ch--------hHHH-HHHHHhh----HHH-------HHHH----HHHHH
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SF--------KLKV-IRAYAVN----KAW-------VIGF----LMDIF   57 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~-~~--------~~~~-~~~~l~~----~~w-------~~G~----~~~~~   57 (196)
                      ++..+.+.++++.++.+++||+..++.++. ..        .... .......    +.|       ....    +.-.+
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l  268 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence            478899999999999999999987766542 10        0000 0011111    011       1111    12234


Q ss_pred             HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      ++.+|..++++.+-+.+..+.-++++++++++..++||+++..+++|.+++..|+.+...
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            777899999999999999999999999999999999999999999999999999998764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.32  E-value=3.9e-06  Score=71.56  Aligned_cols=112  Identities=19%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCc----h-h-------HHHHHHHH---------hhHHH----HHHHHHHHHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-K-------LKVIRAYA---------VNKAW----VIGFLMDIFG   58 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~----~-~-------~~~~~~~l---------~~~~w----~~G~~~~~~g   58 (196)
                      ++...+.++++++...++.|+..++.++..    . .       .+...-..         .++.+    ..+.....++
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            455788899999999988887654443211    0 0       11110000         01111    3445556778


Q ss_pred             HHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (196)
Q Consensus        59 ~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l  115 (196)
                      +.+|..++++.|.+.+.++..++++++.+++.+++||+++..+|+|..++..|+.++
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            889999999999999999999999999999999999999999999999999998763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.30  E-value=1.8e-05  Score=65.90  Aligned_cols=74  Identities=23%  Similarity=0.270  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHH-HHhCCcCchHHHHHHHHHHHHHhhhccCCCCC
Q 029251           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ  122 (196)
Q Consensus        49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~-~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~  122 (196)
                      ..+......+..+++.++++.|.+..+++..++++++.+++. +++|||+++++|.|+.+...|++++..++..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            466777788889999999999999999999999999999997 77799999999999999999999998765543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.28  E-value=1e-05  Score=69.64  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhccCchhHHHhhhh-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHHHhhhccCC
Q 029251           54 MDIFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        54 ~~~~g~~~~~~aL~~~plsvv~pl~~-~~~v~~~~~~~~~l~e~l~~~~----~~Gi~li~~Gv~~l~~~~  119 (196)
                      +...|..+++.+.++..+++.+|+.. +.++++.+.+.+++||+.++++    .+|+.++++|+++++..+
T Consensus        68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            37888899999999999999999987 9999999999999999999999    899999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.20  E-value=0.00014  Score=62.46  Aligned_cols=114  Identities=16%  Similarity=0.030  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHH------HHHHH-----hh--HH-HHHHHHHHHHHHHHHHHHhc--
Q 029251            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKV------IRAYA-----VN--KA-WVIGFLMDIFGALLMLRALS--   67 (196)
Q Consensus         5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~~------~~~~l-----~~--~~-w~~G~~~~~~g~~~~~~aL~--   67 (196)
                      +...+.+.++-+......|.+.++.++.... .+.      .....     ++  ++ ...+.........+++.+++  
T Consensus         6 ~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~   85 (295)
T PRK11689          6 TLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYA   85 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4566677777777778888888887765421 111      10010     11  11 12333333334445555554  


Q ss_pred             --cCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           68 --QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        68 --~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                        ..|.+.+.-+..+.++++.+++.+++|||+++++|.|+.+..+|+.++..+
T Consensus        86 ~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         86 NTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             hccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence              346666777889999999999999999999999999999999999988754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.07  E-value=7.4e-05  Score=64.18  Aligned_cols=66  Identities=15%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      .|.. ......++..++++.+.+..+-+.++.++++++++.+++|||+++++|.|+.+++.|+.+.+
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            4554 57778899999999999999999999999999999999999999999999999999998764

specificities overlap.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.06  E-value=8.7e-05  Score=63.63  Aligned_cols=68  Identities=21%  Similarity=0.346  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHh-ccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        50 ~G~~~~~~g~~~~~~aL-~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      .|......++.++..+. +..|.+.+..+..+.++++.+++.+ +|||+++++|+|+.+..+|+.++..+
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            45544455667778888 9999999999999999999999975 79999999999999999999888643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.02  E-value=0.00039  Score=57.85  Aligned_cols=116  Identities=20%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-------HHHH--HHHh------hH-HH----HHHHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVIR--AYAV------NK-AW----VIGFLMDIFGALL   61 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~-------~~~~--~~l~------~~-~w----~~G~~~~~~g~~~   61 (196)
                      +.++.+.+.++.+.+..+..+|+-. +.+......       ....  ....      +. .|    ..|....+++..+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999776 322211110       0000  0000      00 01    3455555678899


Q ss_pred             HHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        62 ~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      +..+++..|.+.+.++..++++++..++..++||+++..+++|+.+++.|+.+...+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999988654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.00  E-value=0.00055  Score=57.87  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        47 ~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      +.....++|.+.-.+++.++++.|.+.-|-+..+.++++++++.+++|+|+++++|.++.+.++|+.+...+
T Consensus        19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~   90 (244)
T PF04142_consen   19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS   90 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence            346778899999999999999999999999999999999999999999999999999999999999987643

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.99  E-value=0.00015  Score=64.16  Aligned_cols=63  Identities=14%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        55 ~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      +..+......++++.|.|.+|-+.+++++++++++.+++|||++++++.++.+++.|+.+.+.
T Consensus       124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            344455566999999999999999999999999999999999999999999999999999874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.92  E-value=0.00042  Score=59.59  Aligned_cols=63  Identities=10%  Similarity=0.030  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      ...++..++..++++.|-+.+.++.-.+++++.+++.+++||+++..+++|..+++.|+.++.
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            344678899999999999999999999999999999999999999999999999988877654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.90  E-value=0.0011  Score=59.06  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHH------hCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~------l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      ...++..++++.|-+.+.-+..+.++++.+++.++      +|||+++++|+|+.+...|+.++..
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            34478899999999999999999999999999999      6999999999999999999988653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.86  E-value=0.00033  Score=60.35  Aligned_cols=113  Identities=21%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH---------H--HHHH-----Hhh-HH---HHHHHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK---------V--IRAY-----AVN-KA---WVIGFLMDIFGALL   61 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~---------~--~~~~-----l~~-~~---w~~G~~~~~~g~~~   61 (196)
                      +.++..++.++++++.-...-|+..  .++.+...+         .  ...+     ..+ +.   ...|.. ..+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            4688899999999988777766542  333221000         0  0011     001 11   134554 6888889


Q ss_pred             HHHHhc-cCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHHHhhhcc
Q 029251           62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVGA  117 (196)
Q Consensus        62 ~~~aL~-~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~----~Gi~li~~Gv~~l~~  117 (196)
                      ++.+++ +.+.+...++...+++.+.+.+.+++||+.+++++    +|..++..|+.+++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            999999 99999999999999999999999999999999999    999999999998753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.75  E-value=0.00052  Score=58.90  Aligned_cols=116  Identities=10%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCch-------hH----HHHH--H---HHh----h--------HHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSF-------KL----KVIR--A---YAV----N--------KAWVIG   51 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~--~~~~~~~-------~~----~~~~--~---~l~----~--------~~w~~G   51 (196)
                      +.+..+++.++.+.++.++..|+..+  +.++...       +.    +...  .   ...    +        ..|...
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            45788999999999999999998766  3332221       00    0000  0   000    0        001111


Q ss_pred             HH----HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           52 FL----MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        52 ~~----~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      ..    ++.....+++.++++.+-+..........+++.+++.+++||++|..+++|..++..|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            11    1111113455789999999999999999999999999999999999999999999999998764

specificities overlap.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0011  Score=56.42  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHH--------------HHHhhHHH-HHHHHHHHHH----HHHHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVI-LPPLSFKLKVIR--------------AYAVNKAW-VIGFLMDIFG----ALLML   63 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~-~~~~~~~~~~~~--------------~~l~~~~w-~~G~~~~~~g----~~~~~   63 (196)
                      ++.+++.+..|-+.=-+.-||..+. .++.+.......              .-+.+|.. ..++..-+.+    +.+..
T Consensus       149 Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEm  228 (292)
T COG5006         149 GVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEM  228 (292)
T ss_pred             HHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHH
Confidence            5677788888776555554554432 222221111111              12223333 2344333333    46889


Q ss_pred             HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      .||++.|-..-.-+++++..+.++.+..++||++|..||.|+.+++.+..-.+
T Consensus       229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999998877544

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.68  E-value=0.0012  Score=57.00  Aligned_cols=72  Identities=13%  Similarity=0.098  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      |..-..++.++..+...+|++.|.+.-+-.-+..++.+++++.+++|+|.+++||.++.++++|+.+...++
T Consensus        67 ~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~  138 (303)
T PF08449_consen   67 YAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD  138 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence            444456888899999999999999999999999999999999999999999999999999999999876543

; GO: 0055085 transmembrane transport

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.37  E-value=0.00046  Score=59.56  Aligned_cols=71  Identities=27%  Similarity=0.501  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      +....+||+.|+.++.+.|..-.-|--|.+...-++|+.++|.-+++++++.++|.|+..+++|++.+...
T Consensus        89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            34567799999999999999999999999999999999999999999999999999999999999987643

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.29  E-value=0.031  Score=47.88  Aligned_cols=109  Identities=19%  Similarity=0.178  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HH------HHHHH-------HhhHHH----HHHHHHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LK------VIRAY-------AVNKAW----VIGFLMDIFGALLML   63 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~-~~------~~~~~-------l~~~~w----~~G~~~~~~g~~~~~   63 (196)
                      +.++...+.+..+.+.+...-|.+.++.++.... .+      ....+       .++..|    ..|. +......+++
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGV-SLGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4578888899999999888999888776654321 01      11111       111122    4444 3566677889


Q ss_pred             HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        64 ~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      .++++.|.+.+.-+..+.++++++++    +|+.+  ++.++.+...|+.++..
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence            99999999999988888888888876    35543  45667777889887653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.29  E-value=0.0074  Score=51.83  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhhhccCCCCC
Q 029251           50 IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGGEEQ  122 (196)
Q Consensus        50 ~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~l~~~~~~~  122 (196)
                      .+.++..+|...|+.++++..+|...|+. ...++.+.+++.++|||.-+..+++    +++++++|+.+.+.++++.
T Consensus        50 lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~  127 (269)
T PF06800_consen   50 LSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS  127 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence            34446788999999999999999999997 7999999999999999999988875    7788899999988765443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=97.18  E-value=0.0017  Score=48.20  Aligned_cols=99  Identities=23%  Similarity=0.356  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhcccCCCCch-------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHH
Q 029251           15 NNIGKVLQKKGTVILPPLSF-------KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (196)
Q Consensus        15 ~~~g~~lqk~~~~~~~~~~~-------~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~   86 (196)
                      -..-+-+.|+++....+...       -....+.++.|+.++..+.+.--|..+++.-|+..|.|+..|+. ++++.|++
T Consensus        15 WG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta   94 (125)
T KOG4831|consen   15 WGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTA   94 (125)
T ss_pred             HccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHH
Confidence            34446677777754433221       12344566778889999999999999999999999999999997 78999999


Q ss_pred             HHHHHHhCCcCch-HHHHHHHHHHHHHhh
Q 029251           87 IFSHFYLKEVMNA-VDWMGITLAGIGTIG  114 (196)
Q Consensus        87 ~~~~~~l~e~l~~-~~~~Gi~li~~Gv~~  114 (196)
                      +++.. +||++.. +...|..++++|+.+
T Consensus        95 ~~G~~-LGE~~~g~~a~lGt~liv~Gi~L  122 (125)
T KOG4831|consen   95 IFGKA-LGEETQGGLALLGTSLIVFGIWL  122 (125)
T ss_pred             HHHHH-hccccccceeehhhhHHhhhhhh
Confidence            99975 5665554 566799999999875

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.04  E-value=0.019  Score=50.70  Aligned_cols=115  Identities=10%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCch----------h----HHHH--HHHHh-hH------------H-
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILP----PLSF----------K----LKVI--RAYAV-NK------------A-   47 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~----~~~~----------~----~~~~--~~~l~-~~------------~-   47 (196)
                      |.|..+++.++++.+..++..|+..++.+    +.+.          +    .+..  ..... .+            . 
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            57899999999999999999988775432    1110          0    0110  00000 00            0 


Q ss_pred             --HHHHHHHHHHHHHHHH----HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           48 --WVIGFLMDIFGALLML----RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        48 --w~~G~~~~~~g~~~~~----~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                        .+...++.++.+.+|.    ..+++.+-.-..-......+++.+++.+++||++|..+++|..++..|+.+.+
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence              0112233334444443    47777777777777789999999999999999999999999999999998754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.78  E-value=0.008  Score=53.71  Aligned_cols=66  Identities=17%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             HHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCCC
Q 029251           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE  123 (196)
Q Consensus        58 g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~~  123 (196)
                      .-...-.||++-+++-.+-+.++|=.|+..++..+-+||+|..+.+++.+.+.||++++.+++.+.
T Consensus       172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            334556789999999999999999999999999999999999999999999999999987766554

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.76  E-value=0.058  Score=41.13  Aligned_cols=54  Identities=13%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             HHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhh
Q 029251           61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (196)
Q Consensus        61 ~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~  114 (196)
                      ..+..+++.+-.--+-+...--+++.+++..++||++|..++.|+.+...|+..
T Consensus        97 ~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   97 SSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            334445555555555566777888999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.73  E-value=0.034  Score=49.47  Aligned_cols=114  Identities=16%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc--h------------------hHHHHHHHHh--hHH-H---HHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--F------------------KLKVIRAYAV--NKA-W---VIGFLMD   55 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~--~------------------~~~~~~~~l~--~~~-w---~~G~~~~   55 (196)
                      .+++...+++.+|++-=.+-||+-. + -+.+  +                  ..+.+..+++  ++. |   ..+.++-
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~~k-~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W   83 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKKVK-K-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW   83 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccccC-C-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4678888889998887777788833 2 2211  0                  0112222222  111 2   3445567


Q ss_pred             HHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcC---chH----HHHHHHHHHHHHhhhcc
Q 029251           56 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAV----DWMGITLAGIGTIGVGA  117 (196)
Q Consensus        56 ~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l---~~~----~~~Gi~li~~Gv~~l~~  117 (196)
                      .+|-..|..+.++.-+|+.+|+. .+.++++.++..+++||--   +..    ..+|++++++|+.+.+.
T Consensus        84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999996 7999999999999999754   433    34699999999999875

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.71  E-value=0.034  Score=49.24  Aligned_cols=119  Identities=14%  Similarity=0.060  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-h-HHHHHHH-------------HhhHHHHHHHHHH-HHHHHHHH--
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K-LKVIRAY-------------AVNKAWVIGFLMD-IFGALLML--   63 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~-~~~~~~~-------------l~~~~w~~G~~~~-~~g~~~~~--   63 (196)
                      .++=.+++.+|.++++.+++||+-.++.++..+ + .+.+...             +.+-.|-...... +...++++  
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence            356678999999999999999999887664331 1 0111000             0111121111111 11122222  


Q ss_pred             -----HHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251           64 -----RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE  120 (196)
Q Consensus        64 -----~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~  120 (196)
                           ..++..+-....-=..++-..+.+++.+++|++++...++|-+++++|+++....++
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence                 233333333333334677888999999999999999999999999999998765443

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.65  E-value=0.13  Score=45.62  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhc
Q 029251           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (196)
Q Consensus        48 w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~  116 (196)
                      +.....+|.+---+++.+++..|-+.-|...-+-+..|++++..+|+||++.++|....+...|+.++.
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            345566787777799999999999999999999999999999999999999999999999999999987

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.59  E-value=0.0036  Score=53.80  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      +-..|..++++++.+.|++=+.-+.-++++++.+++..++||+.|+.|-.|......||+++.++
T Consensus       106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            44567788999999999999999999999999999999999999999999999999999998753

>TIGR00803 nst UDP-galactose transporter

Probab=96.58  E-value=0.02  Score=46.96  Aligned_cols=112  Identities=14%  Similarity=0.062  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----hhHHH------HHHHHh---------------hHHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKLKV------IRAYAV---------------NKAWVIGFLMDI   56 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~----~~~~~------~~~~l~---------------~~~w~~G~~~~~   56 (196)
                      |.++...+.+..+.+...+.|++..++.+..-    ...+.      ......               ++..+.-..+..
T Consensus        84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  163 (222)
T TIGR00803        84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV  163 (222)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence            34555566667777888899998865432111    01110      000000               122233344566


Q ss_pred             HHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (196)
Q Consensus        57 ~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~  113 (196)
                      ++..+-...+++.+-....-...++.+++.+++.++++|+++...|.|+.++..|+.
T Consensus       164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            666777777888888888888999999999999999999999999999999988764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=96.19  E-value=0.023  Score=47.01  Aligned_cols=63  Identities=21%  Similarity=0.245  Sum_probs=58.2

Q ss_pred             HHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCC
Q 029251           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ  122 (196)
Q Consensus        60 ~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~  122 (196)
                      -.++.||+..+-|.+..+.+.+-.|+-+++..++|+|+..-+.+.+.+...|+++++..+++.
T Consensus        68 Y~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   68 YLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             cHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            467889999999999999999999999999999999999999999999999999999766554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.92  E-value=0.068  Score=46.30  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             HHHHHhhHHHHHHHHH----HHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHh
Q 029251           39 IRAYAVNKAWVIGFLM----DIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (196)
Q Consensus        39 ~~~~l~~~~w~~G~~~----~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~  113 (196)
                      .+...++|+-+....+    .......++.|-+.+-.--+ .+. -.+++++.+++..++|||+|+.||+.+.+..+||.
T Consensus        62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~lea-SLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~  140 (293)
T COG2962          62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEA-SLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVL  140 (293)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHH-HhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3445566765444333    33444455555544322111 222 46778899999999999999999999999999998


Q ss_pred             hhc
Q 029251          114 GVG  116 (196)
Q Consensus       114 ~l~  116 (196)
                      ...
T Consensus       141 ~~~  143 (293)
T COG2962         141 IQT  143 (293)
T ss_pred             HHH
Confidence            754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.23  E-value=0.75  Score=39.56  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCch---------hHHHHH--H--------------HHhhHHHHHHH----H
Q 029251            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF---------KLKVIR--A--------------YAVNKAWVIGF----L   53 (196)
Q Consensus         3 ~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~---------~~~~~~--~--------------~l~~~~w~~G~----~   53 (196)
                      .|+.+.+.+.++.+.-...|++..++-+....         +.+...  .              ....|..+.-.    .
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            37888899999999999999998876543221         111000  0              01122222111    1


Q ss_pred             HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      +...|........+.-.-....-+..+--.++.++|..+++++++..+|.|+.++..|+.+=..
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence            2222333333333333333444455666788899999999999999999999999999887543

; GO: 0055085 transmembrane transport

>PRK02237 hypothetical protein; Provisional

Probab=95.12  E-value=0.21  Score=37.11  Aligned_cols=73  Identities=14%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc-CchhHHHhhhhhHHHH-HHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           47 AWVIGFLMDIFGALLMLRALSQ-APVSVIQPVSGCGLAI-LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        47 ~w~~G~~~~~~g~~~~~~aL~~-~plsvv~pl~~~~~v~-~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      .|+.-.....+....++..++- .+..-++.--..-++. +.+-...+.|+++++.||+|..++.+|+.++-..|
T Consensus        33 ~~~~~pg~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         33 AWWLLPGALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3443333334444455555654 5577788665555544 55889999999999999999999999998775443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.89  E-value=0.075  Score=45.71  Aligned_cols=66  Identities=26%  Similarity=0.291  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhh
Q 029251           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIG  114 (196)
Q Consensus        49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~  114 (196)
                      ..+.++..+|..+++.+-+..-++..+|+.-++++++.+-+.+++||+=+++|+.    |+.+++.|.++
T Consensus       199 il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  199 ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            4555578889999999999999999999999999999999999999999999884    66777666543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=94.80  E-value=0.23  Score=36.80  Aligned_cols=73  Identities=12%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        47 ~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      .|+.-.....+....++..++-.+..-++.-- ..-.+.+.+-...+.|+++++.|++|..++.+|+.++-..|
T Consensus        32 ~~~~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   32 PWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             eeeHhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            34433333444555566667777788888654 55556677888999999999999999999999998876544

; GO: 0016020 membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=92.27  E-value=2.7  Score=35.39  Aligned_cols=105  Identities=15%  Similarity=0.043  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHH------------HHHHHHh--------------hHHHHHHHHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK------------VIRAYAV--------------NKAWVIGFLMD   55 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~------------~~~~~l~--------------~~~w~~G~~~~   55 (196)
                      ++++...++++.+.+.+.+..++..++.+. +.-.+            ......+              ++.-|.-...+
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~  191 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ  191 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence            467888999999999999888887766431 11000            0000011              22223444556


Q ss_pred             HHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHH
Q 029251           56 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL  107 (196)
Q Consensus        56 ~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~l  107 (196)
                      .+|-++--..+++.+--+=.=..+.+.+++.+++..+++.++|..-.+|..+
T Consensus       192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            6666666666777665544445678999999999999999999988887654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=91.45  E-value=1.1  Score=33.11  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCc-hhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCC
Q 029251           48 WVIGFLMDIFGALLMLRALSQAP-VSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE  120 (196)
Q Consensus        48 w~~G~~~~~~g~~~~~~aL~~~p-lsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~  120 (196)
                      |+.......+....++..+...| ..-++.-- ..-++.+..-...+.|.++++.+|+|..++.+|+.++...|.
T Consensus        33 ~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          33 LWLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HhHHHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            34333333444444555544434 55666544 445556677788889999999999999999999888765543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=89.96  E-value=0.11  Score=44.38  Aligned_cols=68  Identities=24%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHHHhCCcCchHHHH----HHHHHHHHHhhhccCC
Q 029251           52 FLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGG  119 (196)
Q Consensus        52 ~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~~l~e~l~~~~~~----Gi~li~~Gv~~l~~~~  119 (196)
                      ..+-.+|...|+.+.+...+|...|+. ...++-+.+++.+.+||.-++.+.+    +..+++.|+.+-+..+
T Consensus        66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~  138 (288)
T COG4975          66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQD  138 (288)
T ss_pred             hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeec
Confidence            345677889999999999999999997 6889999999999999999987763    6677888888887654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=89.87  E-value=2.1  Score=32.92  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCchhHHHhhh-hhHHHHHHHHHHH----HhCCcCchHHHHHHHHHHHHHhh
Q 029251           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHF----YLKEVMNAVDWMGITLAGIGTIG  114 (196)
Q Consensus        49 ~~G~~~~~~g~~~~~~aL~~~plsvv~pl~-~~~~v~~~~~~~~----~l~e~l~~~~~~Gi~li~~Gv~~  114 (196)
                      +.|..+-..-..+......+...+...-+. ...++.+.++-++    .-++++++++..|+.+++.|+++
T Consensus        68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            567666666667777777777777777665 4555666666665    46789999999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=89.21  E-value=1.4  Score=38.29  Aligned_cols=61  Identities=20%  Similarity=0.219  Sum_probs=44.5

Q ss_pred             HHHHhccCchhHHHhhhhhHH-HHHHHHHHHHhCC--cCchHHH----HHHHHHHHHHhhhccCCCCC
Q 029251           62 MLRALSQAPVSVIQPVSGCGL-AILSIFSHFYLKE--VMNAVDW----MGITLAGIGTIGVGAGGEEQ  122 (196)
Q Consensus        62 ~~~aL~~~plsvv~pl~~~~~-v~~~~~~~~~l~e--~l~~~~~----~Gi~li~~Gv~~l~~~~~~~  122 (196)
                      .-.+|+.-|-+++.|+.-..+ ..+.+-|..++||  +.+..++    .|...++.|+.+++...|.+
T Consensus       230 LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~  297 (300)
T PF05653_consen  230 LNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE  297 (300)
T ss_pred             HHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence            356889999999999986555 4555666667887  4555555    47888899999998665443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=89.19  E-value=14  Score=31.94  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCch-hHH-----HHHHHHhhHH-------HHHHHHHHHHHH----HHHHHHh
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK-----VIRAYAVNKA-------WVIGFLMDIFGA----LLMLRAL   66 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~-~~~-----~~~~~l~~~~-------w~~G~~~~~~g~----~~~~~aL   66 (196)
                      .++.-+.+......|..+-|..--..+..+. ..+     .+...+.+|+       -+.-...|+...    .+++.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666777776666555543321 111     1111111211       134445555444    3568899


Q ss_pred             ccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 029251           67 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLL  146 (196)
Q Consensus        67 ~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (196)
                      ++.|+.++..+--++.+..+.++.+      +.++.+.+.+.+.|+.++.-.++..+  +.+.    ..+......-.|+
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~~~--~lDp----~Gv~~Al~AG~~W  160 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQSVW--SLDP----VGVALALGAGACW  160 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCCcC--cCCH----HHHHHHHHHhHHH
Confidence            9999999999988888777776554      45676777888888887764333222  1222    1222233344566


Q ss_pred             HHHHHHhhh
Q 029251          147 NGWLRICKH  155 (196)
Q Consensus       147 ~~~~~~~~~  155 (196)
                      +.|-...+|
T Consensus       161 a~YIv~G~r  169 (292)
T COG5006         161 ALYIVLGQR  169 (292)
T ss_pred             HHHHHHcch
Confidence            666444443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=89.17  E-value=9.6  Score=34.52  Aligned_cols=120  Identities=11%  Similarity=-0.015  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCch----hH-HHHHH-HHhhHHH----------------------HHHH
Q 029251            2 WELICLTLAATAGNNIGKVLQKKGTVILP-PLSF----KL-KVIRA-YAVNKAW----------------------VIGF   52 (196)
Q Consensus         2 w~~i~lal~aa~~~~~g~~lqk~~~~~~~-~~~~----~~-~~~~~-~l~~~~w----------------------~~G~   52 (196)
                      .+|-++++++|+.+++=.++.||-..+.+ +.+.    |. +.+.. ++..|.|                      ..+.
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            46789999999999999999998887763 4431    11 11111 1111111                      4455


Q ss_pred             HHHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCCCC
Q 029251           53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE  121 (196)
Q Consensus        53 ~~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~~~  121 (196)
                      +-.+++-.+|..|.-.-+--+++--+++++..+++.=..+-|.+.|....+|...+.+|-+++..+.+.
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            555566678988887777777777778888888888888889999999999999999999988755443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=88.11  E-value=0.09  Score=46.23  Aligned_cols=64  Identities=16%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        54 ~~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      .+.++-.+.-.++++.|+|..|.+-+++++++.+++.++.+|+.+..-+.-...++.|+.+-+.
T Consensus        92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~  155 (316)
T KOG1441|consen   92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV  155 (316)
T ss_pred             HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence            5777888899999999999999999999999999999999999999877766667777666554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=87.77  E-value=3.2  Score=36.11  Aligned_cols=63  Identities=10%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhccCchhHHHhhhhhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhcc
Q 029251           55 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (196)
Q Consensus        55 ~~~g~~~~~~aL~~~plsvv~pl~~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~  117 (196)
                      -.+-..++..+-++.|+|..-=+.-.++....+++.+++||+++..++..-+++-+|+++.+.
T Consensus       221 TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         221 TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            445557899999999999999999999999999999999999999999999999999888763

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.73  E-value=2.5  Score=31.10  Aligned_cols=37  Identities=30%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251           79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (196)
Q Consensus        79 ~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l  115 (196)
                      ..++.+-.++|.++++|+++...+.|-.++..|+..+
T Consensus        77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi  113 (116)
T COG3169          77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI  113 (116)
T ss_pred             HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence            5667788899999999999999999999998888765

>TIGR00688 rarD rarD protein

Probab=84.08  E-value=20  Score=29.59  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCc-h-h---HHHHH-H----HHh-----hH--HH----HHHHHHHHHHHHHHHHH
Q 029251            7 LTLAATAGNNIGKVLQKKGTVILPPLS-F-K---LKVIR-A----YAV-----NK--AW----VIGFLMDIFGALLMLRA   65 (196)
Q Consensus         7 lal~aa~~~~~g~~lqk~~~~~~~~~~-~-~---~~~~~-~----~l~-----~~--~w----~~G~~~~~~g~~~~~~a   65 (196)
                      ..+.++++.+.....+|+..++..... . .   .+... .    ...     ++  .|    ..|. +..++..++..+
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~t~i~~~l~~~a  228 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGL-ITGTPLLAFVIA  228 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHH-HHHHHHHHHHHH
Confidence            467788888888888888654211100 0 0   01100 0    000     11  23    2333 356788999999


Q ss_pred             hccCchhHHHhhhhhHHHHHHHHHHHH
Q 029251           66 LSQAPVSVIQPVSGCGLAILSIFSHFY   92 (196)
Q Consensus        66 L~~~plsvv~pl~~~~~v~~~~~~~~~   92 (196)
                      +++.|.+.+.++.-++++++.+++.++
T Consensus       229 ~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       229 ANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=82.43  E-value=1.8  Score=32.07  Aligned_cols=37  Identities=19%  Similarity=0.082  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhh
Q 029251           79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (196)
Q Consensus        79 ~~~~v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l  115 (196)
                      ..++.+-.+++.+++||+++.....|-.+++.++..+
T Consensus        70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            5677778899999999999999999999998887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	99.54
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.4

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=99.54  E-value=2.2e-13  Score=100.60  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHH
Q 029251            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (196)
Q Consensus         4 ~i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~   82 (196)
                      ...+-+++.++...+|...|++.+    +.          ++++++.+..++.+++.++..++++.|++.++|+ .++++
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~~----~~----------~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~   68 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSEG----FT----------RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC----cc----------hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence            345567788999999999999742    11          2356688899999999999999999999999999 79999


Q ss_pred             HHHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccCC
Q 029251           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (196)
Q Consensus        83 v~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~~  119 (196)
                      +++++++.+++||++|+.+|+|+.+++.|++++...+
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999987644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.40  E-value=6.8e-13  Score=101.77  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCchhHHHhh-hhhHHH
Q 029251            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA   83 (196)
Q Consensus         5 i~lal~aa~~~~~g~~lqk~~~~~~~~~~~~~~~~~~~l~~~~w~~G~~~~~~g~~~~~~aL~~~plsvv~pl-~~~~~v   83 (196)
                      .++-+++.++...+|.+.|++..-              .++++++.+.+++++++.++..++++.|++.++|+ ..++++
T Consensus         4 ~l~Ll~ail~ev~~~~~lK~s~g~--------------~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv   69 (137)
T 2i68_A            4 YIYLGGAILAEVIGTTLMKFSEGF--------------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc--------------chHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence            345567888899999999987411              12356679999999999999999999999999999 899999


Q ss_pred             HHHHHHHHHhCCcCchHHHHHHHHHHHHHhhhccC
Q 029251           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (196)
Q Consensus        84 ~~~~~~~~~l~e~l~~~~~~Gi~li~~Gv~~l~~~  118 (196)
                      ++++++.+++||++|..+|+|+.+++.|++++...
T Consensus        70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00